Citrus Sinensis ID: 009833
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AZ2 | 526 | Sugar transport protein 1 | yes | no | 0.992 | 0.988 | 0.824 | 0.0 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.961 | 0.982 | 0.589 | 0.0 | |
| Q10710 | 522 | Sugar carrier protein A O | N/A | no | 0.956 | 0.959 | 0.574 | 1e-167 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.958 | 0.959 | 0.576 | 1e-167 | |
| Q9SBA7 | 507 | Sugar transport protein 8 | no | no | 0.944 | 0.976 | 0.595 | 1e-166 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.965 | 0.984 | 0.550 | 1e-165 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.980 | 0.984 | 0.560 | 1e-165 | |
| Q9SFG0 | 507 | Sugar transport protein 6 | no | no | 0.944 | 0.976 | 0.593 | 1e-165 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.954 | 0.967 | 0.560 | 1e-164 | |
| Q8GW61 | 504 | Sugar transport protein 1 | no | no | 0.919 | 0.956 | 0.583 | 1e-164 |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function desciption |
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Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/530 (82%), Positives = 473/530 (89%), Gaps = 10/530 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGGF+ S GVEFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FL+KFF
Sbjct: 1 MTGGGFATSAN--GVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFF 58
Query: 61 PVVYRRTQQG--DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118
PVVYR+ G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR LGRRLTMLIAG
Sbjct: 59 PVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAG 118
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN
Sbjct: 119 VFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
VTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNSL+ERGR +E
Sbjct: 179 VTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDE 238
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
GKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAVALQIFQQCT
Sbjct: 239 GKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCT 298
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR+LLLEAG+Q
Sbjct: 299 GINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQ 358
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
MF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGWLIPSETFPL
Sbjct: 359 MFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPL 418
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV FLLPETKN
Sbjct: 419 ETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKN 478
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDDE----PKKNGHRNGFDPVSQL 524
+PIEEMTERVWK+HW W FM D +D E K NG NGFDP ++L
Sbjct: 479 IPIEEMTERVWKKHWFWARFM--DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/517 (58%), Positives = 392/517 (75%), Gaps = 13/517 (2%)
Query: 1 MPGGGFSASVPPAGV------EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPH 54
M GG F P GV +++ K+T VI++C++AA GG +FGYD+G+SGGVT+M
Sbjct: 1 MAGGSFG----PTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDE 56
Query: 55 FLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM 114
FL++FF VY + +Q +SNYCKYDNQGL FTSSLYLAGL +T AS TR GRR ++
Sbjct: 57 FLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASI 116
Query: 115 LIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNIL 174
+ GI F+ G N A NLAML+ GRI+LG G+GF NQAVPL+LSE+APT +RGGLN++
Sbjct: 117 VCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMM 176
Query: 175 FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 234
FQL TIGI AN+VNYGT +K WGWR+SLGLA PA L+T+G + +TPNSL+ERG
Sbjct: 177 FQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERG 235
Query: 235 RFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIF 294
E G+ VL K+RGT+ + E ++V+AS +A +KHPFRN+L++R+RPQLV+A+ + +F
Sbjct: 236 LTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMF 295
Query: 295 QQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE 354
Q TGIN+I+FYAPVLF+T+GFGG+ASLYS+ +TGAV VLST +SI VD++GRR LL+
Sbjct: 296 QILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLIT 355
Query: 355 AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSE 414
GIQM + Q ++A+ILG+K D+ E L G++V+VVI IC F+ AF WSWGPLGW IPSE
Sbjct: 356 GGIQMIICQVIVAVILGVKFGDNQE-LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSE 414
Query: 415 TFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474
FPLETRSAGQS+TV VNLLFTF+IAQAFL +LC FKFGIFLFF+GWV +M+ FV+FLLP
Sbjct: 415 IFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLP 474
Query: 475 ETKNVPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKK 511
ETK VPIEEMT +W +HW WK + D +DE K
Sbjct: 475 ETKGVPIEEMT-LLWSKHWFWKKVLPDATNLEDESKN 510
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10710|STA_RICCO Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/519 (57%), Positives = 387/519 (74%), Gaps = 18/519 (3%)
Query: 1 MPGGGFSASVPPAGV------EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPH 54
M GG S+ PAGV +++ K+T V V+C++AA GG +FGYD+G+SGGV +M
Sbjct: 1 MAGG----SLAPAGVAKERAEQYQGKVTFAVFVACMVAAVGGSIFGYDIGISGGVISMDA 56
Query: 55 FLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM 114
FL+KFF VY + + ++NYCKYD+Q L FTSSLYLAGL A+ A TR GRR ++
Sbjct: 57 FLEKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASI 116
Query: 115 LIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNIL 174
+ GI F+ G A N A NLAML++GRI+LG G+GF NQAVPL+LSE+APT +RGGLNI+
Sbjct: 117 ISGGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIM 176
Query: 175 FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 234
FQL T GI AN+VNYGT ++S WGWR+SLGLA PA L+T+G LL+ +TPNSLIE+G
Sbjct: 177 FQLATTSGIFTANMVNYGTHKLES-WGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQG 235
Query: 235 RFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIF 294
E+G+ VL KIRGT ++ EF ++++AS +A +KHPFRN+L++RNRPQLV+A+ + F
Sbjct: 236 LHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFMPTF 295
Query: 295 QQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE 354
Q TGIN I+FYAP LF+++GFGG+A+LYS+ +TGAV ST +SI +VD++GRR LL+
Sbjct: 296 QILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLIS 355
Query: 355 AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSE 414
GIQM Q ++AIILG+K D+ + L F+VLVVIMIC F+ AF WSWGPLGW +PSE
Sbjct: 356 GGIQMITCQVIVAIILGVKFGDN-QQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSE 414
Query: 415 TFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474
FPLETRSAGQS+TV VNL FTFVIAQ+F S+LC FKFGIFLFF+GWV +M+ FV+ LP
Sbjct: 415 IFPLETRSAGQSITVAVNLFFTFVIAQSFPSLLCAFKFGIFLFFAGWVTVMTAFVYIFLP 474
Query: 475 ETKNVPIEEMTERVWKQHWLWKNFM-----VDDGFDDDE 508
ETK VPIEEM +W++HW WK + VDD + E
Sbjct: 475 ETKGVPIEEMI-FLWRKHWFWKKIVPGQPEVDDSRESME 512
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Ricinus communis (taxid: 3988) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/512 (57%), Positives = 384/512 (75%), Gaps = 10/512 (1%)
Query: 1 MPGGGFSASVPPAGVE---FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLK 57
MP G +PP+G + +T V V+C++AA GGL+FGYD+G+SGGVT+M FLK
Sbjct: 1 MPAVG---GIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLK 57
Query: 58 KFFPVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI 116
KFFP VYR+ + + SN YC+YD+Q L +FTSSLYLA L A+ AS TR+ GR+L+ML
Sbjct: 58 KFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLF 117
Query: 117 AGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176
G+ F AG N AA+ + MLI+GRILLG G+GFANQ+VPL+LSE+AP + RG LNI FQ
Sbjct: 118 GGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQ 177
Query: 177 LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRF 236
L++TIGIL AN++NY + IK WGWR+SLG A +PA ++TVGSL++ DTPNS+IERG+
Sbjct: 178 LSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQH 237
Query: 237 EEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQ 296
EE +A L+++RG + ++ EF +LV AS +K+V+HP+RNLL+R+ RP L +A+A+ FQQ
Sbjct: 238 EEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQ 297
Query: 297 CTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAG 356
TGIN IMFYAPVLF T+GFG A+L S VITG VNV +T+VSIY VDK GRR L LE G
Sbjct: 298 LTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGG 357
Query: 357 IQMFLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSE 414
+QM + Q ++A +G K V DL +AV+VV+ IC ++S FAWSWGPLGWL+PSE
Sbjct: 358 VQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSE 417
Query: 415 TFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474
FPLE RSA QSV V VN+ FTFV+AQ FL MLCH KFG+F+FFS +VLIMS FV++ LP
Sbjct: 418 IFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLP 477
Query: 475 ETKNVPIEEMTERVWKQHWLWKNFMVDDGFDD 506
ETK +PIEEM + VWKQHW W ++VD+ + +
Sbjct: 478 ETKGIPIEEMGQ-VWKQHWYWSRYVVDEDYPN 508
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Ricinus communis (taxid: 3988) |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/497 (59%), Positives = 367/497 (73%), Gaps = 2/497 (0%)
Query: 16 EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNY 75
F+AK+T V + I+AA GGL+FGYD+G+SGGVTAM FLK+FFP VY R + ++NY
Sbjct: 13 SFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNY 72
Query: 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA 135
CKYDNQ LQLFTSSLYLA L A+FFAS T +LGRR TM +A IFF+ GV A N+
Sbjct: 73 CKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIY 132
Query: 136 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195
MLI+GRILLG GVGF NQAVPLFLSEIAP R+RGGLNI+FQL VTIGIL AN+VNY TS
Sbjct: 133 MLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFTSS 192
Query: 196 IKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE 255
I +GWRI+LG AGIPA +L GSLL+ +TP SLIER + +EGK L+KIRG + ++ E
Sbjct: 193 IHP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVDEE 251
Query: 256 FLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG 315
+ +V A IA++VK P+ L+K +RP VI + LQ FQQ TGINAIMFYAPVLF+T+G
Sbjct: 252 YESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQTVG 311
Query: 316 FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVK 375
FG A+L S V+TG +NVLST V I+ VDK GRR LLL++ + M + Q VI IIL K
Sbjct: 312 FGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILA-KDL 370
Query: 376 DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 435
D + L A++VVI +C ++ FAWSWGPLGWLIPSETFPLETR+ G ++ V N+ F
Sbjct: 371 DVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNMFF 430
Query: 436 TFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLW 495
TFVIAQAFLSMLC K GIF FFSGW+++M F F +PETK V I++M + VWK HW W
Sbjct: 431 TFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHWYW 490
Query: 496 KNFMVDDGFDDDEPKKN 512
K FM+++ D E + +
Sbjct: 491 KRFMLEEDEHDVEKRTD 507
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/514 (55%), Positives = 378/514 (73%), Gaps = 8/514 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GG F + G +E +T VI++CI+AA GGL+FGYD+G+SGGVT+M FL KFF
Sbjct: 1 MAGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFF 60
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P V + ++ D+ YCK+DNQ LQLFTSSLYLA L A+F AS TR+ GR+++M I G+
Sbjct: 61 PQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGL 120
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F+ G FN A N++MLI+GR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +
Sbjct: 121 AFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL ANL+NYGTS + +Q GWR+SLGLA +PA ++ +GS ++ DTPNS++ERG+ EE
Sbjct: 181 TIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
K +L+KIRG D ++ EF +L++A AK+V++P++N+++ + RP L+ A+ FQQ TG
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITG 299
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
IN IMFYAPVLFKTLGFG A+L S VITG VN+LST VSIY+VD+ GRR+L LE GIQM
Sbjct: 300 INVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQM 359
Query: 360 FLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
F+ Q ++ +G + + L A ++ IC +++ FAWSWGPLGWL+PSE PL
Sbjct: 360 FICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPL 419
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
E R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF+ V IM+ F++FLLPETK
Sbjct: 420 EIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKG 479
Query: 479 VPIEEMTERVWKQHWLWKNFMVDD----GFDDDE 508
VPIEEM RVWKQHW WK ++ +D G DD+
Sbjct: 480 VPIEEMG-RVWKQHWFWKKYIPEDAIIGGHDDNN 512
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/521 (56%), Positives = 382/521 (73%), Gaps = 7/521 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGF V + K+TP V+ +C++AA GGL+FGYD+G+SGGVT+MP FLK+FF
Sbjct: 1 MPAGGFV--VGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58
Query: 61 PVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P VYR+ Q+ +N YC+YD+ L +FTSSLYLA L ++ AS TR+ GRRL+ML GI
Sbjct: 59 PSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGI 118
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F AG N A+++ MLIVGRILLG G+GFANQAVPL+LSE+AP + RG LNI FQL++
Sbjct: 119 LFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSI 178
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL A ++NY + IK WGWR+SLG A +PA ++T+GSL++ DTPNS+IERG+ EE
Sbjct: 179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEA 238
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
K LR+IRG D + EF +LV AS+ ++ ++HP+RNLL+R+ RP L +AV + FQQ TG
Sbjct: 239 KTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTG 298
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
IN IMFYAPVLF T+GF ASL S V+TG+VNV +TLVSIY VD+ GRR L LE G QM
Sbjct: 299 INVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQM 358
Query: 360 FLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417
+ Q V+A +G K V +L +A++VV IC +++ FAWSWGPLGWL+PSE FP
Sbjct: 359 LICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFP 418
Query: 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETK 477
LE RSA QS+TV VN++FTF+IAQ FL+MLCH KFG+FL F+ +V++MS FV+ LPETK
Sbjct: 419 LEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETK 478
Query: 478 NVPIEEMTERVWKQHWLWKNFMVDDGFDDD-EPKKNGHRNG 517
+PIEEM + VW+ HW W F+ D + + E KN ++ G
Sbjct: 479 GIPIEEMGQ-VWRSHWYWSRFVEDGEYGNALEMGKNSNQAG 518
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFG0|STP6_ARATH Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/497 (59%), Positives = 365/497 (73%), Gaps = 2/497 (0%)
Query: 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYC 76
FEAK+T V + ++AA GGL+FGYD+G+SGGV+AM FLK+FFP V+ R + ++NYC
Sbjct: 13 FEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYC 72
Query: 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAM 136
KYDNQ LQLFTSSLYLA L A+F AS T +LGRR TM A IFF+ GV A NL M
Sbjct: 73 KYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVM 132
Query: 137 LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI 196
LI+GR+ LG GVGF NQAVPLFLSEIAP ++RGGLNI+FQL VTIGIL AN+VNY T+ +
Sbjct: 133 LIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYFTATV 192
Query: 197 KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEF 256
+GWRI+LG AGIPA +L GSLL+ +TP SLIER + EEGK LRKIRG D I E+
Sbjct: 193 HP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDINDEY 251
Query: 257 LELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGF 316
+V A IA +VK P+R LLK +RP +I + LQ+FQQ TGINAIMFYAPVLF+T+GF
Sbjct: 252 ESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVLFQTVGF 311
Query: 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376
G A+L S VITG++NVL+T V IY VD+ GRR LLL++ + M + Q +I IIL K
Sbjct: 312 GSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILA-KDLG 370
Query: 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT 436
+ L A++VVI +C ++ FAWSWGPLGWLIPSETFPLETRSAG +V V N+ FT
Sbjct: 371 VTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNMFFT 430
Query: 437 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWK 496
FVIAQAFLSMLC + GIF FFSGW+++M F FF +PETK + I++M E VWK HW WK
Sbjct: 431 FVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHWFWK 490
Query: 497 NFMVDDGFDDDEPKKNG 513
+M+ + D K+N
Sbjct: 491 RYMLPEDDHHDIEKRNA 507
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/505 (56%), Positives = 373/505 (73%), Gaps = 5/505 (0%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GG F + G +E +T VI++CI+AA GGL+FGYD+G+SGGVT+M FL KFF
Sbjct: 1 MAGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFF 60
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P V ++ + ++ YCK+DNQ LQLFTSSLYLA L ++F AS TR+ GR+++M + G+
Sbjct: 61 PEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGV 120
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F+ G FN A N+AMLIVGR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +
Sbjct: 121 AFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL ANL+NYGTS + GWR+SLGLA +PA ++ +GS ++ DTPNS++ERG++E+
Sbjct: 181 TIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAVALQIFQQCT 298
+ +L+KIRG D ++ EF +L +A AK+V +P++N+ ++ + RP LV A+ FQQ T
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQIT 299
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GIN IMFYAPVLFKTLGF ASL S VITGAVNV+STLVSIY+VD+ GRR+L LE GIQ
Sbjct: 300 GINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQ 359
Query: 359 MFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417
M +SQ V+ ++G+K S L A ++ IC +++ FAWSWGPLGWL+PSE P
Sbjct: 360 MIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICP 419
Query: 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETK 477
LE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF G V +M+ F++FLLPETK
Sbjct: 420 LEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETK 479
Query: 478 NVPIEEMTERVWKQHWLWKNFMVDD 502
VPIEEM RVWKQH WK +M DD
Sbjct: 480 GVPIEEMG-RVWKQHPFWKRYMPDD 503
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW61|STP14_ARATH Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/487 (58%), Positives = 367/487 (75%), Gaps = 5/487 (1%)
Query: 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQG-DDSNY 75
+E +IT I +CI+ + GG +FGYD+GVSGGVT+M FLK+FFP +Y+R Q ++++Y
Sbjct: 18 YEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDY 77
Query: 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA 135
CKYDNQ L LFTSSLY AGL +TF ASY TR GRR ++L+ + F G N AA+N+
Sbjct: 78 CKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNIL 137
Query: 136 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195
MLI+GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQL IGIL ANL+NY T
Sbjct: 138 MLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTEQ 197
Query: 196 IKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE 255
I WGWR+SLGLA +PA L+ +G L++ +TPNSL+E+G+ E+ KAVL K+RGT+ IE E
Sbjct: 198 IHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 256 FLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AVALQIFQQCTGINAIMFYAPVLFKTL 314
F +LVEAS A+ VK+PFRNLL RRNRPQLVI A+ L FQQ TG+N+I+FYAPV+F++L
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 315 GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 374
GFGGSASL S+ IT A V++ ++S+YS DK GRR LLLEA ++MF V+ + L +K
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 375 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 434
+ E L +++V++IC F+ A+ SWGP+GWL+PSE FPLETRSAGQSV VCVNL
Sbjct: 377 GEGKE-LPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLF 435
Query: 435 FTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWL 494
FT +IAQ FL LCH K+GIFL F+G +L M FV+FLLPETK VPIEE+ +W+QHWL
Sbjct: 436 FTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVY-LLWRQHWL 494
Query: 495 WKNFMVD 501
WK ++ D
Sbjct: 495 WKKYVED 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| 225432612 | 536 | PREDICTED: sugar transport protein 13 [V | 0.996 | 0.973 | 0.817 | 0.0 | |
| 147822729 | 536 | hypothetical protein VITISV_025413 [Viti | 0.996 | 0.973 | 0.819 | 0.0 | |
| 255552343 | 530 | sugar transporter, putative [Ricinus com | 0.994 | 0.983 | 0.825 | 0.0 | |
| 15240313 | 526 | sugar transport protein 13 [Arabidopsis | 0.992 | 0.988 | 0.824 | 0.0 | |
| 356541627 | 522 | PREDICTED: sugar transport protein 13-li | 0.990 | 0.994 | 0.829 | 0.0 | |
| 449520309 | 538 | PREDICTED: sugar transport protein 13-li | 0.988 | 0.962 | 0.814 | 0.0 | |
| 449433333 | 526 | PREDICTED: sugar transport protein 13-li | 1.0 | 0.996 | 0.806 | 0.0 | |
| 356497466 | 522 | PREDICTED: sugar transport protein 13-li | 0.965 | 0.969 | 0.843 | 0.0 | |
| 5734440 | 523 | hexose transporter [Solanum lycopersicum | 0.996 | 0.998 | 0.822 | 0.0 | |
| 300119978 | 529 | putative hexose transporter [Manihot esc | 0.996 | 0.986 | 0.827 | 0.0 |
| >gi|225432612|ref|XP_002281683.1| PREDICTED: sugar transport protein 13 [Vitis vinifera] gi|66016961|gb|AAT09979.1| hexose transporter [Vitis vinifera] gi|297737025|emb|CBI26226.3| unnamed protein product [Vitis vinifera] gi|310877796|gb|ADP37129.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/538 (81%), Positives = 479/538 (89%), Gaps = 16/538 (2%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGF+A P AG +FEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+M FLKKFF
Sbjct: 1 MPAGGFAA--PSAGGDFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMDPFLKKFF 58
Query: 61 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF 120
PVVYR+ + +SNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTR GR+ TMLIAGIF
Sbjct: 59 PVVYRKQHEELESNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRSFGRKATMLIAGIF 118
Query: 121 FIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
FI GV N AAQ+LAMLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT
Sbjct: 119 FIVGVVLNTAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 178
Query: 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGK 240
IGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVGSLLV DTPNSLIERGR EEGK
Sbjct: 179 IGILFANLVNYGTAKIKGGWGWRVSLGLAGIPAVLLTVGSLLVVDTPNSLIERGRLEEGK 238
Query: 241 AVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGI 300
AVLRKIRGTDKIEPE+ EL+EASR+AK VKHPFRNL++RRNRPQL+IAVALQIFQQ TGI
Sbjct: 239 AVLRKIRGTDKIEPEYQELLEASRVAKLVKHPFRNLMQRRNRPQLIIAVALQIFQQFTGI 298
Query: 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 360
NAIMFYAPVLF TLGFG ASLYS VITGAVNVLSTLVS+YSVDKVGRR+LLLEAG+QMF
Sbjct: 299 NAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVLSTLVSVYSVDKVGRRLLLLEAGVQMF 358
Query: 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET 420
SQ VIAIILGIKVKDHS +LHTG+AVLVV+++CTF++ FAWSWGPLGWLIPSETFPLET
Sbjct: 359 FSQVVIAIILGIKVKDHSNNLHTGYAVLVVVLVCTFVAGFAWSWGPLGWLIPSETFPLET 418
Query: 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVP 480
RSAGQSVTVCVNLLFTFVIAQ+FLSMLCH K+GIFLFFSGWV IMS FV FLLPETKN+P
Sbjct: 419 RSAGQSVTVCVNLLFTFVIAQSFLSMLCHLKYGIFLFFSGWVFIMSFFVLFLLPETKNIP 478
Query: 481 IEEMTERVWKQHWLWKNFMVDD-------GFDDDE-------PKKNGHRNGFDPVSQL 524
IEEMTERVWK+HWLWK FM D G++D+E K++G+ NGFDP SQL
Sbjct: 479 IEEMTERVWKKHWLWKRFMDDHVEGFPVFGYNDEETVVNGSDKKRDGYGNGFDPSSQL 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822729|emb|CAN61766.1| hypothetical protein VITISV_025413 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/538 (81%), Positives = 477/538 (88%), Gaps = 16/538 (2%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGF+A P AG +FEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+M FLKKFF
Sbjct: 1 MPAGGFAA--PSAGGDFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMDPFLKKFF 58
Query: 61 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF 120
PVVYR+ + SNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTR GR+ TMLIAGIF
Sbjct: 59 PVVYRKXHEXLXSNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRSFGRKATMLIAGIF 118
Query: 121 FIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
FI GV N AAQ+LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT
Sbjct: 119 FIVGVVLNTAAQDLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 178
Query: 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGK 240
IGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVGSLLV DTPNSLIERGR EEGK
Sbjct: 179 IGILFANLVNYGTAKIKGGWGWRVSLGLAGIPAVLLTVGSLLVVDTPNSLIERGRLEEGK 238
Query: 241 AVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGI 300
AVLRKIRGTDKIEPE+ EL+EASR+AK VKHPFRNL++RRNRPQL+IAVALQIFQQ TGI
Sbjct: 239 AVLRKIRGTDKIEPEYQELLEASRVAKLVKHPFRNLMQRRNRPQLIIAVALQIFQQFTGI 298
Query: 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 360
NAIMFYAPVLF TLGFG ASLYS VITGAVNVLSTLVS+YSVDKVGRR+LLLEAG+QMF
Sbjct: 299 NAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVLSTLVSVYSVDKVGRRLLLLEAGVQMF 358
Query: 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET 420
SQ VIAIILGIKVKDHS +LHTG+AVLVV+++CTF++ FAWSWGPLGWLIPSETFPLET
Sbjct: 359 FSQVVIAIILGIKVKDHSNNLHTGYAVLVVVLVCTFVAGFAWSWGPLGWLIPSETFPLET 418
Query: 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVP 480
RSAGQSVTVCVNLLFTFVIAQ+FLSMLCH K+GIFLFFSGWV IMS FV FLLPETKN+P
Sbjct: 419 RSAGQSVTVCVNLLFTFVIAQSFLSMLCHLKYGIFLFFSGWVFIMSFFVLFLLPETKNIP 478
Query: 481 IEEMTERVWKQHWLWKNFMVDD-------GFDDDE-------PKKNGHRNGFDPVSQL 524
IEEMTERVWK+HWLWK FM D G++D E K++G+ NGFDP SQL
Sbjct: 479 IEEMTERVWKKHWLWKRFMDDHVEGXPVFGYNDXETVVNGSDKKRDGYGNGFDPSSQL 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552343|ref|XP_002517216.1| sugar transporter, putative [Ricinus communis] gi|223543851|gb|EEF45379.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/533 (82%), Positives = 477/533 (89%), Gaps = 12/533 (2%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGGFSA+ G EFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FLKKFF
Sbjct: 1 MAGGGFSAA-SAGGAEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLKKFF 59
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P VY +T +SNYCKYDNQGLQLFTSSLYLAGL ATFFASYTTR+LGRR TMLIAG+
Sbjct: 60 PTVYYKTNDPTINSNYCKYDNQGLQLFTSSLYLAGLVATFFASYTTRKLGRRPTMLIAGL 119
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
FFI GV N AAQ+LAMLI+GR+LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV
Sbjct: 120 FFIVGVVLNAAAQDLAMLIIGRVLLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGILFA+LVNYGT+ I WGWR+SLGLAGIPA LLTVG+LLV++TPNSLIERGR +EG
Sbjct: 180 TIGILFASLVNYGTAKITDGWGWRLSLGLAGIPALLLTVGALLVSETPNSLIERGRLDEG 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
KAVLR+IRGTDKIEPEFLELVEASR AK VKHPFRNL+KRRNRPQLVIAVALQIFQQ TG
Sbjct: 240 KAVLRRIRGTDKIEPEFLELVEASRAAKAVKHPFRNLMKRRNRPQLVIAVALQIFQQFTG 299
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
INAIMFYAPVLF T+GFG A+LYS VITGAVNV+ST+VSIYSVDK+GRR+LLLEAGIQM
Sbjct: 300 INAIMFYAPVLFDTVGFGSDAALYSAVITGAVNVVSTVVSIYSVDKLGRRVLLLEAGIQM 359
Query: 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419
F+SQ +IAIILGIKV DHS+DL FA++VV+M+C F+SAFAWSWGPLGWLIPSETFPLE
Sbjct: 360 FISQVIIAIILGIKVTDHSDDLSKAFAIIVVVMVCGFVSAFAWSWGPLGWLIPSETFPLE 419
Query: 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNV 479
TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMS FVFFLLPETKNV
Sbjct: 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSFFVFFLLPETKNV 479
Query: 480 PIEEMTERVWKQHWLWKNFMVDDGFDD--------DEPKKNGHRNGFDPVSQL 524
PIEEMTERVWKQHW WK FM D ++D KKNGH+NGFDPV+QL
Sbjct: 480 PIEEMTERVWKQHWFWKRFM--DDYEDGAIEMNGQKASKKNGHKNGFDPVTQL 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240313|ref|NP_198006.1| sugar transport protein 13 [Arabidopsis thaliana] gi|85701281|sp|Q94AZ2.2|STP13_ARATH RecName: Full=Sugar transport protein 13; AltName: Full=Hexose transporter 13; AltName: Full=Multicopy suppressor of snf4 deficiency protein 1 gi|9965739|gb|AAG10146.1|AF250340_1 putative hexose transporter MSS1 [Arabidopsis thaliana] gi|3319354|gb|AAC26243.1| contains similarity to sugar transporters (Pfam: sugar_tr.hmm, score: 395.39) [Arabidopsis thaliana] gi|15450649|gb|AAK96596.1| AT5g26340/F9D12_17 [Arabidopsis thaliana] gi|15487258|emb|CAC69074.1| STP13 protein [Arabidopsis thaliana] gi|332006170|gb|AED93553.1| sugar transport protein 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/530 (82%), Positives = 473/530 (89%), Gaps = 10/530 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGGF+ S GVEFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FL+KFF
Sbjct: 1 MTGGGFATSAN--GVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFF 58
Query: 61 PVVYRRTQQG--DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118
PVVYR+ G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR LGRRLTMLIAG
Sbjct: 59 PVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAG 118
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN
Sbjct: 119 VFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
VTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNSL+ERGR +E
Sbjct: 179 VTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDE 238
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
GKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAVALQIFQQCT
Sbjct: 239 GKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCT 298
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR+LLLEAG+Q
Sbjct: 299 GINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQ 358
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
MF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGWLIPSETFPL
Sbjct: 359 MFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPL 418
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV FLLPETKN
Sbjct: 419 ETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKN 478
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDDE----PKKNGHRNGFDPVSQL 524
+PIEEMTERVWK+HW W FM D +D E K NG NGFDP ++L
Sbjct: 479 IPIEEMTERVWKKHWFWARFM--DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541627|ref|XP_003539275.1| PREDICTED: sugar transport protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/527 (82%), Positives = 470/527 (89%), Gaps = 8/527 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGF+ + G +FEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FLKKFF
Sbjct: 1 MAVGGFTNAA--GGADFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPPFLKKFF 58
Query: 61 PVVYRRT--QQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118
P VYR+T ++G DSNYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTRRLGRRLTMLIAG
Sbjct: 59 PTVYRKTVEEKGLDSNYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRRLGRRLTMLIAG 118
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
FFI GV N AAQ+LAMLIVGRILLGCGVGFANQAVP+FLSEIAP+RIRG LNILFQLN
Sbjct: 119 FFFIGGVVLNAAAQDLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRGALNILFQLN 178
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
VTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLT+G+L V DTPNSLIERGR EE
Sbjct: 179 VTIGILFANLVNYGTNKIKGGWGWRLSLGLAGIPAVLLTLGALFVVDTPNSLIERGRLEE 238
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
GK VL+KIRGTD IE EF ELVEASR+AKEVKHPFRNLLKRRNRPQLVI++ALQIFQQ T
Sbjct: 239 GKTVLKKIRGTDNIELEFQELVEASRVAKEVKHPFRNLLKRRNRPQLVISIALQIFQQFT 298
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GINAIMFYAPVLF TLGF ASLYS VITGAVNVLST+VSIYSVDK+GRRMLLLEAG+Q
Sbjct: 299 GINAIMFYAPVLFNTLGFKNDASLYSAVITGAVNVLSTVVSIYSVDKLGRRMLLLEAGVQ 358
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
MFLSQ VIAIILGIKV DHS+DL G A+LVV+M+CTF+S+FAWSWGPLGWLIPSETFPL
Sbjct: 359 MFLSQVVIAIILGIKVTDHSDDLSKGIAILVVVMVCTFVSSFAWSWGPLGWLIPSETFPL 418
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL+MS FV FLLPETKN
Sbjct: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFVLFLLPETKN 478
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK-KNGHRNGFDPVSQL 524
VPIEEMTERVWKQHW WK F +DD D+ NG NGFDP S+L
Sbjct: 479 VPIEEMTERVWKQHWFWKRF-IDDAADEKVANVSNG--NGFDPTSRL 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520309|ref|XP_004167176.1| PREDICTED: sugar transport protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/524 (81%), Positives = 473/524 (90%), Gaps = 6/524 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGFS + P GVEFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FLKKFF
Sbjct: 1 MPAGGFS-TAPATGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPSFLKKFF 59
Query: 61 PVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF 120
PVV+RR ++G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR TMLIAGIF
Sbjct: 60 PVVHRRIEEGGDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRPTMLIAGIF 119
Query: 121 FIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
FI G A N AAQN+ MLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT
Sbjct: 120 FILGTALNAAAQNIEMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 179
Query: 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGK 240
IGILFA+L+NYGT+ IK WGWR+SLGLAG+PA LLT+G+LLV +TPNSLIERGR EEGK
Sbjct: 180 IGILFASLINYGTAKIKDGWGWRLSLGLAGVPAGLLTIGALLVVETPNSLIERGRLEEGK 239
Query: 241 AVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGI 300
A+LR+IRGT+ +EPEFLELVEASRIAKEVKHPFRNLLKRRN+PQL+IAVALQ+FQQ TGI
Sbjct: 240 AILRRIRGTENVEPEFLELVEASRIAKEVKHPFRNLLKRRNQPQLIIAVALQVFQQLTGI 299
Query: 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMF 360
NAIMFYAPVLF TLGF A+LYS VITGAVNV+ST+VSIYSVDK+GRR+LLLEAG+QMF
Sbjct: 300 NAIMFYAPVLFNTLGFKNDAALYSAVITGAVNVVSTVVSIYSVDKLGRRILLLEAGVQMF 359
Query: 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET 420
+SQ VIA+ILGIKVKD + +LH A++VV+M+CTF+S+FAWSWGPLGWLIPSETFPLET
Sbjct: 360 ISQVVIAVILGIKVKDDTNNLHNALAIVVVVMVCTFVSSFAWSWGPLGWLIPSETFPLET 419
Query: 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVP 480
RSAGQS+TVCVNLLFTF IAQAFLSMLCHFKFGIFLFFSGWVL+MS FV FLLPETKN+P
Sbjct: 420 RSAGQSITVCVNLLFTFAIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFVLFLLPETKNIP 479
Query: 481 IEEMTERVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQL 524
IEEMTERVWKQHWLWK FM DD++ +N HR + V L
Sbjct: 480 IEEMTERVWKQHWLWKRFM-----DDNDEGQNHHRYAKETVKPL 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433333|ref|XP_004134452.1| PREDICTED: sugar transport protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/526 (80%), Positives = 466/526 (88%), Gaps = 2/526 (0%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGFSA G EFEAKITPIV++SC+MAATGGLMFGYDVGVSGGVT+MP FLKKFF
Sbjct: 1 MPAGGFSAVHKNGGTEFEAKITPIVVISCVMAATGGLMFGYDVGVSGGVTSMPDFLKKFF 60
Query: 61 PVVYRRTQ--QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118
PVVYR+TQ + DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR+LGR+LTMLIAG
Sbjct: 61 PVVYRKTQLKEESDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRKLGRKLTMLIAG 120
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
+FFI G N A+NL MLIVGRI LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN
Sbjct: 121 VFFIIGTVLNTTAENLMMLIVGRISLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 180
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
VTIGILFANLVNY T+ I+ WGWR+SLGLAGIPA LLT+G+L+V DTPNSLIERGR EE
Sbjct: 181 VTIGILFANLVNYFTAKIEGGWGWRLSLGLAGIPAGLLTLGALMVVDTPNSLIERGRMEE 240
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
GKAVL+KIRGTD +E EFLELVEASR+A+E+KHPFRNLLKRRNRPQL+IAVALQIFQQ T
Sbjct: 241 GKAVLKKIRGTDNVEAEFLELVEASRVAREIKHPFRNLLKRRNRPQLIIAVALQIFQQFT 300
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GINAIMFYAPVLF TLGF SASLYS VITGAVNV ST++SIYSVDKVGRRMLLLEAG+Q
Sbjct: 301 GINAIMFYAPVLFNTLGFKSSASLYSAVITGAVNVASTVISIYSVDKVGRRMLLLEAGVQ 360
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
MF+SQ +IAI+LGIKV DHS++L FA LVV+M+CTF+S+FAWSWGPLGWLIPSETFPL
Sbjct: 361 MFISQLMIAIVLGIKVNDHSDNLTKSFATLVVVMVCTFVSSFAWSWGPLGWLIPSETFPL 420
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH KFGIFLFFS WVLIMS FV FLLPETKN
Sbjct: 421 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHLKFGIFLFFSSWVLIMSVFVLFLLPETKN 480
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQL 524
VPIEEMTE+VWK+HW WK F+ +D + + H NGF+P +L
Sbjct: 481 VPIEEMTEQVWKRHWFWKRFVEEDEIEGQKRSVKKHSNGFEPSLEL 526
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497466|ref|XP_003517581.1| PREDICTED: sugar transport protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/512 (84%), Positives = 464/512 (90%), Gaps = 6/512 (1%)
Query: 16 EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRT--QQGDDS 73
+FEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FLKKFFP VYR+T ++G DS
Sbjct: 14 DFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPPFLKKFFPTVYRKTVEEKGLDS 73
Query: 74 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN 133
NYCKYDNQGLQLFTSSLYLAGLT+TFFASYTTRRLGRRLTMLIAG+FFI GV N AAQ+
Sbjct: 74 NYCKYDNQGLQLFTSSLYLAGLTSTFFASYTTRRLGRRLTMLIAGVFFICGVVLNAAAQD 133
Query: 134 LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193
LAMLIVGRILLGCGVGFANQAVP+FLSEIAP+RIRG LNILFQLNVTIGILFANLVNYGT
Sbjct: 134 LAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRGALNILFQLNVTIGILFANLVNYGT 193
Query: 194 SHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIE 253
+ IK WGWR+SLGLAGIPA LLT+G+L V DTPNSLIERGR EEGK VL+KIRGTD IE
Sbjct: 194 NKIKGGWGWRLSLGLAGIPAVLLTLGALFVVDTPNSLIERGRLEEGKTVLKKIRGTDNIE 253
Query: 254 PEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT 313
EF EL+EASR+AKEVKHPFRNLLKRRNRPQLVI+VALQIFQQ TGINAIMFYAPVLF T
Sbjct: 254 LEFQELLEASRVAKEVKHPFRNLLKRRNRPQLVISVALQIFQQFTGINAIMFYAPVLFNT 313
Query: 314 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 373
LGF ASLYS VITGAVNVLST+VSIYSVDKVGRR+LLLEAG+QMFLSQ VIAIILGIK
Sbjct: 314 LGFKNDASLYSAVITGAVNVLSTVVSIYSVDKVGRRILLLEAGVQMFLSQVVIAIILGIK 373
Query: 374 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
V DHS+DL G A+LVV+M+CTF+S+FAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL
Sbjct: 374 VTDHSDDLSKGIAILVVVMVCTFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 434 LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHW 493
LFTFVIAQAFLSMLCHFKFGIFLFFSGWVL+MS FV FLLPETKNVPIEEMTERVWKQHW
Sbjct: 434 LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLVMSVFVLFLLPETKNVPIEEMTERVWKQHW 493
Query: 494 LWKNFMVDDGFDDDEPK-KNGHRNGFDPVSQL 524
WK F +DD D+ NG NGFDP S+L
Sbjct: 494 FWKRF-IDDAADEKVAHVSNG--NGFDPTSRL 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5734440|emb|CAB52689.1| hexose transporter [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/525 (82%), Positives = 474/525 (90%), Gaps = 3/525 (0%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGGF+ S G FEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+M FLKKFF
Sbjct: 1 MAGGGFTTS-GNGGTHFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMDPFLKKFF 59
Query: 61 PVVYRRTQQ-GDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P VY+RT++ G DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR+LGRRLTMLIAG
Sbjct: 60 PTVYKRTKEPGLDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRKLGRRLTMLIAGC 119
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
FFI GV N AAQ+LAMLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV
Sbjct: 120 FFIIGVVLNAAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGILFANLVNYGT+ I WGWR+SLGLAG PA LLT+G+L V +TPNSLIERG EEG
Sbjct: 180 TIGILFANLVNYGTAKISGGWGWRLSLGLAGFPAVLLTLGALFVVETPNSLIERGYLEEG 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
K VLRKIRGTD IEPEFLELVEASR+AK+VKHPFRNLL+R+NRPQL+I+VALQIFQQ TG
Sbjct: 240 KEVLRKIRGTDNIEPEFLELVEASRVAKQVKHPFRNLLQRKNRPQLIISVALQIFQQFTG 299
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
INAIMFYAPVLF TLGFG SA+LYS VITGAVNVLST+VS+YSVDK+GRR+LLLEAG+QM
Sbjct: 300 INAIMFYAPVLFSTLGFGNSAALYSAVITGAVNVLSTVVSVYSVDKLGRRVLLLEAGVQM 359
Query: 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419
LSQ +IAIILGIKV DHS++L G+ + VV++ICT++SAFAWSWGPLGWLIPSETFPLE
Sbjct: 360 LLSQIIIAIILGIKVTDHSDNLSHGWGIFVVVLICTYVSAFAWSWGPLGWLIPSETFPLE 419
Query: 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNV 479
TRSAGQSVTVCVNLLFTFV+AQAFLSMLCHFK+GIFLFFSGW+ +MS FVFFLLPETKNV
Sbjct: 420 TRSAGQSVTVCVNLLFTFVMAQAFLSMLCHFKYGIFLFFSGWIFVMSLFVFFLLPETKNV 479
Query: 480 PIEEMTERVWKQHWLWKNFMVDDGFDDDEPKKNGHRNGFDPVSQL 524
PIEEMTERVWKQHWLWK FMVD+ D D KKNGH NG+DP S+L
Sbjct: 480 PIEEMTERVWKQHWLWKRFMVDED-DVDMIKKNGHANGYDPTSRL 523
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|300119978|gb|ADJ68005.1| putative hexose transporter [Manihot esculenta] gi|300119980|gb|ADJ68006.1| putative hexose transporter 2 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/529 (82%), Positives = 472/529 (89%), Gaps = 7/529 (1%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGFSA+ P GVEFEAKITPIVI+SCIM + GYDVGVSGGVT+MP FLKKFF
Sbjct: 1 MPAGGFSAA-PAGGVEFEAKITPIVIISCIMFGYDVGVSGYDVGVSGGVTSMPDFLKKFF 59
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119
P VY +TQ +SNYCKY NQGLQLFTSSLYLAGL ATFFASYTTR+LGRR TMLIAGI
Sbjct: 60 PTVYDKTQDPTINSNYCKYANQGLQLFTSSLYLAGLVATFFASYTTRKLGRRPTMLIAGI 119
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
FFI GV N AAQ+LAMLI+GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV
Sbjct: 120 FFIIGVVLNTAAQDLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGI+FANLVNYGT+ IKS WGWR+SLGLAGIPA LLT GSLLV++TPNSLIERGR EEG
Sbjct: 180 TIGIVFANLVNYGTAKIKSGWGWRLSLGLAGIPALLLTFGSLLVSETPNSLIERGRLEEG 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
KA+LRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNL+KRRNRPQLVI+VALQIFQQ TG
Sbjct: 240 KAILRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLMKRRNRPQLVISVALQIFQQLTG 299
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
INAIMFYAPVLF TLGFG ASLYS VITGAVNV+ST+VSIYSVD+VGRR+LLLEAG+QM
Sbjct: 300 INAIMFYAPVLFDTLGFGSDASLYSAVITGAVNVISTVVSIYSVDRVGRRVLLLEAGVQM 359
Query: 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419
F+SQ +IAIILGIKVKDHSEDLH G AVLVVIMICTF+S FAWSWGPLGWLIPSETFPLE
Sbjct: 360 FVSQVIIAIILGIKVKDHSEDLHRGIAVLVVIMICTFVSGFAWSWGPLGWLIPSETFPLE 419
Query: 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNV 479
TRSAGQSVTVCVNLLFTF IAQAFLSMLCHFK+GIFLFFS WV +MS FVFFL+PETKN+
Sbjct: 420 TRSAGQSVTVCVNLLFTFAIAQAFLSMLCHFKYGIFLFFSSWVFVMSFFVFFLVPETKNI 479
Query: 480 PIEEMTERVWKQHWLWKNFMVDD-----GFDDDEPKKNGHRNGFDPVSQ 523
PIEEMTERVWKQHWLWK FM D+ + + +K GH NGFDPV+Q
Sbjct: 480 PIEEMTERVWKQHWLWKRFMDDNEEGAIEINGQKSQKKGHANGFDPVTQ 528
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 524 | ||||||
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.994 | 0.990 | 0.807 | 4.9e-227 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.967 | 0.988 | 0.580 | 4.3e-164 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.942 | 0.974 | 0.580 | 2.5e-152 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.938 | 0.970 | 0.585 | 2.5e-152 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.980 | 0.984 | 0.545 | 1.2e-150 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.963 | 0.982 | 0.541 | 3.3e-150 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.954 | 0.967 | 0.550 | 1e-148 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.919 | 0.956 | 0.570 | 5.5e-148 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.965 | 0.984 | 0.552 | 3.1e-147 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.946 | 0.964 | 0.516 | 5.3e-143 |
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2191 (776.3 bits), Expect = 4.9e-227, P = 4.9e-227
Identities = 427/529 (80%), Positives = 463/529 (87%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GGGF+ S GVEFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FL+KFF
Sbjct: 1 MTGGGFATSAN--GVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFF 58
Query: 61 PVVYRRTQQG-D-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAG 118
PVVYR+ G D DSNYCKYDNQGLQLFTSSLYLAGLTATFFASY IAG
Sbjct: 59 PVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAG 118
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
+FFI GVA N AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN
Sbjct: 119 VFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
VTIGILFANLVNYGT+ IK WGWR+SLGLAGIPA LLTVG+LLVT+TPNSL+ERGR +E
Sbjct: 179 VTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDE 238
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
GKAVLR+IRGTD +EPEF +L+EASR+AKEVKHPFRNLL+RRNRPQLVIAVALQIFQQCT
Sbjct: 239 GKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCT 298
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GINAIMFYAPVLF TLGFG ASLYS V+TGAVNVLSTLVSIYSVDKVGRR+LLLEAG+Q
Sbjct: 299 GINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQ 358
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
MF SQ VIAIILG+KV D S +L GFA+LVV+MICT+++AFAWSWGPLGWLIPSETFPL
Sbjct: 359 MFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPL 418
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQSVTVCVNLLFTF+IAQAFLSMLCHFKFGIF+FFS WVLIMS FV FLLPETKN
Sbjct: 419 ETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKN 478
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDD---EPKKNGHRNGFDPVSQL 524
+PIEEMTERVWK+HW W FM DD D + K NG NGFDP ++L
Sbjct: 479 IPIEEMTERVWKKHWFWARFM-DDHNDHEFVNGEKSNGKSNGFDPSTRL 526
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
Identities = 297/512 (58%), Positives = 382/512 (74%)
Query: 1 MPGGGFSAS--VPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKK 58
M GG F + +++ K+T VI++C++AA GG +FGYD+G+SGGVT+M FL++
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 59 FFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAG 118
FF VY + +Q +SNYCKYDNQGL FTSSLYLAGL +T AS G
Sbjct: 61 FFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGG 120
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
I F+ G N A NLAML+ GRI+LG G+GF NQAVPL+LSE+APT +RGGLN++FQL
Sbjct: 121 ISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLA 180
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
TIGI AN+VNYGT +K WGWR+SLGLA PA L+T+G + +TPNSL+ERG E
Sbjct: 181 TTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTER 239
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
G+ VL K+RGT+ + E ++V+AS +A +KHPFRN+L++R+RPQLV+A+ + +FQ T
Sbjct: 240 GRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILT 299
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GIN+I+FYAPVLF+T+GFGG+ASLYS+ +TGAV VLST +SI VD++GRR LL+ GIQ
Sbjct: 300 GINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQ 359
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
M + Q ++A+ILG+K D+ E L G++V+VVI IC F+ AF WSWGPLGW IPSE FPL
Sbjct: 360 MIICQVIVAVILGVKFGDNQE-LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPL 418
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
ETRSAGQS+TV VNLLFTF+IAQAFL +LC FKFGIFLFF+GWV +M+ FV+FLLPETK
Sbjct: 419 ETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKG 478
Query: 479 VPIEEMTERVWKQHWLWKNFMVDDGFDDDEPK 510
VPIEEMT +W +HW WK + D +DE K
Sbjct: 479 VPIEEMT-LLWSKHWFWKKVLPDATNLEDESK 509
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
Identities = 288/496 (58%), Positives = 357/496 (71%)
Query: 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYC 76
FEAK+T V + ++AA GGL+FGYD+G+SGGV+AM FLK+FFP V+ R + ++NYC
Sbjct: 13 FEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYC 72
Query: 77 KYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAM 136
KYDNQ LQLFTSSLYLA L A+F AS A IFF+ GV A NL M
Sbjct: 73 KYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVM 132
Query: 137 LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI 196
LI+GR+ LG GVGF NQAVPLFLSEIAP ++RGGLNI+FQL VTIGIL AN+VNY T+ +
Sbjct: 133 LIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYFTATV 192
Query: 197 KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEF 256
+GWRI+LG AGIPA +L GSLL+ +TP SLIER + EEGK LRKIRG D I E+
Sbjct: 193 HP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDINDEY 251
Query: 257 LELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGF 316
+V A IA +VK P+R LLK +RP +I + LQ+FQQ TGINAIMFYAPVLF+T+GF
Sbjct: 252 ESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVLFQTVGF 311
Query: 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376
G A+L S VITG++NVL+T V IY VD+ GRR LLL++ + M + Q +I IIL K
Sbjct: 312 GSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILA-KDLG 370
Query: 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT 436
+ L A++VVI +C ++ FAWSWGPLGWLIPSETFPLETRSAG +V V N+ FT
Sbjct: 371 VTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSCNMFFT 430
Query: 437 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWK 496
FVIAQAFLSMLC + GIF FFSGW+++M F FF +PETK + I++M E VWK HW WK
Sbjct: 431 FVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKPHWFWK 490
Query: 497 NFMVDDGFDDDEPKKN 512
+M+ + D K+N
Sbjct: 491 RYMLPEDDHHDIEKRN 506
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
Identities = 289/494 (58%), Positives = 358/494 (72%)
Query: 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYC 76
F+AK+T V + I+AA GGL+FGYD+G+SGGVTAM FLK+FFP VY R + ++NYC
Sbjct: 14 FDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNYC 73
Query: 77 KYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAM 136
KYDNQ LQLFTSSLYLA L A+FFAS +A IFF+ GV A N+ M
Sbjct: 74 KYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYM 133
Query: 137 LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI 196
LI+GRILLG GVGF NQAVPLFLSEIAP R+RGGLNI+FQL VTIGIL AN+VNY TS I
Sbjct: 134 LIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFTSSI 193
Query: 197 KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEF 256
+GWRI+LG AGIPA +L GSLL+ +TP SLIER + +EGK L+KIRG + ++ E+
Sbjct: 194 HP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDVDEEY 252
Query: 257 LELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGF 316
+V A IA++VK P+ L+K +RP VI + LQ FQQ TGINAIMFYAPVLF+T+GF
Sbjct: 253 ESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQTVGF 312
Query: 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376
G A+L S V+TG +NVLST V I+ VDK GRR LLL++ + M + Q VI IIL K D
Sbjct: 313 GNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILA-KDLD 371
Query: 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT 436
+ L A++VVI +C ++ FAWSWGPLGWLIPSETFPLETR+ G ++ V N+ FT
Sbjct: 372 VTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSCNMFFT 431
Query: 437 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWLWK 496
FVIAQAFLSMLC K GIF FFSGW+++M F F +PETK V I++M + VWK HW WK
Sbjct: 432 FVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKLHWYWK 491
Query: 497 NFMVDDGFDDDEPK 510
FM+++ D E +
Sbjct: 492 RFMLEEDEHDVEKR 505
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 284/521 (54%), Positives = 372/521 (71%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
MP GGF V + K+TP V+ +C++AA GGL+FGYD+G+SGGVT+MP FLK+FF
Sbjct: 1 MPAGGFV--VGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFF 58
Query: 61 PVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGI 119
P VYR+ Q+ +N YC+YD+ L +FTSSLYLA L ++ AS GI
Sbjct: 59 PSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGI 118
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F AG N A+++ MLIVGRILLG G+GFANQAVPL+LSE+AP + RG LNI FQL++
Sbjct: 119 LFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSI 178
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL A ++NY + IK WGWR+SLG A +PA ++T+GSL++ DTPNS+IERG+ EE
Sbjct: 179 TIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEA 238
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
K LR+IRG D + EF +LV AS+ ++ ++HP+RNLL+R+ RP L +AV + FQQ TG
Sbjct: 239 KTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTG 298
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
IN IMFYAPVLF T+GF ASL S V+TG+VNV +TLVSIY VD+ GRR L LE G QM
Sbjct: 299 INVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQM 358
Query: 360 FLSQTVIAIILGIK--VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417
+ Q V+A +G K V +L +A++VV IC +++ FAWSWGPLGWL+PSE FP
Sbjct: 359 LICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFP 418
Query: 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETK 477
LE RSA QS+TV VN++FTF+IAQ FL+MLCH KFG+FL F+ +V++MS FV+ LPETK
Sbjct: 419 LEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETK 478
Query: 478 NVPIEEMTERVWKQHWLWKNFMVDDGFDDD-EPKKNGHRNG 517
+PIEEM + VW+ HW W F+ D + + E KN ++ G
Sbjct: 479 GIPIEEMGQ-VWRSHWYWSRFVEDGEYGNALEMGKNSNQAG 518
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 278/513 (54%), Positives = 369/513 (71%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GG F + G +E +T VI++CI+AA GGL+FGYD+G+SGGVT+M FL KFF
Sbjct: 1 MAGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFF 60
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGI 119
P V + ++ D+ YCK+DNQ LQLFTSSLYLA L A+F AS I G+
Sbjct: 61 PQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGL 120
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F+ G FN A N++MLI+GR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +
Sbjct: 121 AFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL ANL+NYGTS + +Q GWR+SLGLA +PA ++ +GS ++ DTPNS++ERG+ EE
Sbjct: 181 TIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEA 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299
K +L+KIRG D ++ EF +L++A AK+V++P++N+++ + RP L+ A+ FQQ TG
Sbjct: 240 KQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITG 299
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
IN IMFYAPVLFKTLGFG A+L S VITG VN+LST VSIY+VD+ GRR+L LE GIQM
Sbjct: 300 INVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQM 359
Query: 360 FLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418
F+ Q ++ +G + + L A ++ IC +++ FAWSWGPLGWL+PSE PL
Sbjct: 360 FICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPL 419
Query: 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKN 478
E R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF+ V IM+ F++FLLPETK
Sbjct: 420 EIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKG 479
Query: 479 VPIEEMTERVWKQHWLWKNFMVDD----GFDDD 507
VPIEEM RVWKQHW WK ++ +D G DD+
Sbjct: 480 VPIEEMG-RVWKQHWFWKKYIPEDAIIGGHDDN 511
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
Identities = 278/505 (55%), Positives = 364/505 (72%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GG F + G +E +T VI++CI+AA GGL+FGYD+G+SGGVT+M FL KFF
Sbjct: 1 MAGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFF 60
Query: 61 PVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGI 119
P V ++ + ++ YCK+DNQ LQLFTSSLYLA L ++F AS + G+
Sbjct: 61 PEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGV 120
Query: 120 FFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179
F+ G FN A N+AMLIVGR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +
Sbjct: 121 AFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAI 180
Query: 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEG 239
TIGIL ANL+NYGTS + GWR+SLGLA +PA ++ +GS ++ DTPNS++ERG++E+
Sbjct: 181 TIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQA 239
Query: 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAVALQIFQQCT 298
+ +L+KIRG D ++ EF +L +A AK+V +P++N+ ++ + RP LV A+ FQQ T
Sbjct: 240 REMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQIT 299
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GIN IMFYAPVLFKTLGF ASL S VITGAVNV+STLVSIY+VD+ GRR+L LE GIQ
Sbjct: 300 GINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQ 359
Query: 359 MFLSQTVIAIILGIKV-KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417
M +SQ V+ ++G+K S L A ++ IC +++ FAWSWGPLGWL+PSE P
Sbjct: 360 MIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICP 419
Query: 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETK 477
LE R AGQ++ V VN+ FTF+I Q FL+MLCH KFG+F FF G V +M+ F++FLLPETK
Sbjct: 420 LEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETK 479
Query: 478 NVPIEEMTERVWKQHWLWKNFMVDD 502
VPIEEM RVWKQH WK +M DD
Sbjct: 480 GVPIEEMG-RVWKQHPFWKRYMPDD 503
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 278/487 (57%), Positives = 359/487 (73%)
Query: 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQG-DDSNY 75
+E +IT I +CI+ + GG +FGYD+GVSGGVT+M FLK+FFP +Y+R Q ++++Y
Sbjct: 18 YEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDY 77
Query: 76 CKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLA 135
CKYDNQ L LFTSSLY AGL +TF ASY + + F G N AA+N+
Sbjct: 78 CKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNIL 137
Query: 136 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195
MLI+GRI LG G+GF NQAVPL+LSE+AP +IRG +N LFQL IGIL ANL+NY T
Sbjct: 138 MLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTEQ 197
Query: 196 IKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE 255
I WGWR+SLGLA +PA L+ +G L++ +TPNSL+E+G+ E+ KAVL K+RGT+ IE E
Sbjct: 198 IHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAE 256
Query: 256 FLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AVALQIFQQCTGINAIMFYAPVLFKTL 314
F +LVEAS A+ VK+PFRNLL RRNRPQLVI A+ L FQQ TG+N+I+FYAPV+F++L
Sbjct: 257 FQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 315 GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 374
GFGGSASL S+ IT A V++ ++S+YS DK GRR LLLEA ++MF V+ + L +K
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 375 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL 434
+ E L +++V++IC F+ A+ SWGP+GWL+PSE FPLETRSAGQSV VCVNL
Sbjct: 377 GEGKE-LPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLF 435
Query: 435 FTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQHWL 494
FT +IAQ FL LCH K+GIFL F+G +L M FV+FLLPETK VPIEE+ +W+QHWL
Sbjct: 436 FTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVY-LLWRQHWL 494
Query: 495 WKNFMVD 501
WK ++ D
Sbjct: 495 WKKYVED 501
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| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
Identities = 283/512 (55%), Positives = 363/512 (70%)
Query: 1 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFF 60
M GG F G ++E ++T V+++CI+AA GGL+FGYD+G+SGGV +M FL KFF
Sbjct: 1 MAGGAFIDESGHGG-DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFF 59
Query: 61 PVVYRRTQ--QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAG 118
P V R+ Q +G ++ YCKYDN+ L LFTSSLYLA L A+F AS I
Sbjct: 60 PDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGS 119
Query: 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLN 178
+ F++G N A NL MLI+GR+ LG GVGFANQ+VPL+LSE+AP +IRG LNI FQL
Sbjct: 120 LAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLA 179
Query: 179 VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEE 238
+TIGIL AN+VNY T +++ GWR+SLGLAG+PA ++ VG + DTPNS++ERG E+
Sbjct: 180 ITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEK 239
Query: 239 GKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298
K +L+KIRGT ++E EF EL A AK+VKHP+ N+++ R RPQL + FQQ T
Sbjct: 240 AKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLT 299
Query: 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ 358
GIN IMFYAPVLFKT+GFG ASL S VITG VNVLST+VSIYSVDK GRR L L+ G Q
Sbjct: 300 GINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQ 359
Query: 359 MFLSQTVIAIILGIKVKDHSEDLHTGF-AVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417
M ++Q + ++G K + E +G A +++ +IC +++ FAWSWGPLGWL+PSE P
Sbjct: 360 MIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICP 419
Query: 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETK 477
LE RSAGQS+ V VN+ FTF I Q FL+MLCH KFG+F FF+G VLIM+ F++FLLPETK
Sbjct: 420 LEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETK 479
Query: 478 NVPIEEMTERVWKQHWLWKNFMV-DDGFDDDE 508
VPIEEM +VWK+H W + DDG D D+
Sbjct: 480 GVPIEEMG-KVWKEHRYWGKYSNNDDGDDVDD 510
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| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 259/501 (51%), Positives = 362/501 (72%)
Query: 4 GGFSASVPPAGVE-FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPV 62
GGF + P GV + K+TP V V+C + A GGL+FGYD+G+SGGVT+M FL++FFP
Sbjct: 3 GGFVSQTP--GVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60
Query: 63 VYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFI 122
VY++ + ++ YC++D+Q L LFTSSLY+A L ++ FAS + G F
Sbjct: 61 VYKKMKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFF 120
Query: 123 AGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIG 182
G AFN AQN+AML++GRILLG GVGFANQ+VP++LSE+AP +RG N FQ+ + G
Sbjct: 121 IGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFG 180
Query: 183 ILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAV 242
I+ A ++NY T+ +K GWRISLGLA +PA ++ +G+L++ DTPNSLIERG EE K +
Sbjct: 181 IVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEM 240
Query: 243 LRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINA 302
L+ IRGT++++ EF +L++AS +K+VKHP++N++ R RPQL++ + FQQ TGIN
Sbjct: 241 LQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINV 300
Query: 303 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362
I FYAPVLF+TLGFG ASL S ++TG + +L T VS+++VD+ GRR+L L+ GIQM +S
Sbjct: 301 ITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVS 360
Query: 363 QTVIAIILGIKVK-DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETR 421
Q I ++G+K + ++ A L+V +IC +++ FAWSWGPLGWL+PSE PLE R
Sbjct: 361 QIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIR 420
Query: 422 SAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPI 481
SA Q++ V VN+ FTF++AQ FL+MLCH KFG+F FF+ +V+IM+ F++ +LPETKNVPI
Sbjct: 421 SAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPI 480
Query: 482 EEMTERVWKQHWLWKNFMVDD 502
EEM RVWK HW W F+ D+
Sbjct: 481 EEMN-RVWKAHWFWGKFIPDE 500
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AZ2 | STP13_ARATH | No assigned EC number | 0.8245 | 0.9923 | 0.9885 | yes | no |
| Q41144 | STC_RICCO | No assigned EC number | 0.5761 | 0.9580 | 0.9598 | N/A | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3276 | 0.8110 | 0.9299 | yes | no |
| Q39524 | HUP2_PARKE | No assigned EC number | 0.5342 | 0.9274 | 0.9 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5741 | 0.9561 | 0.9597 | N/A | no |
| P15686 | HUP1_PARKE | No assigned EC number | 0.5102 | 0.9179 | 0.9007 | N/A | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5418 | 0.9503 | 0.9764 | N/A | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3218 | 0.8225 | 0.9288 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | HT5 | SubName- Full=Hexose transporter (Chromosome chr5 scaffold_2, whole genome shotgun sequence); (536 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa) | • | 0.483 | |||||||
 | GSVIVG00002307001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa) | • | 0.480 | |||||||
 | MSA | SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (144 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 524 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-123 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-115 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-63 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-17 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-15 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 5e-11 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-06 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 4e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.001 | |
| pfam10187 | 99 | pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA | 0.002 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-123
Identities = 164/462 (35%), Positives = 246/462 (53%), Gaps = 20/462 (4%)
Query: 29 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTS 88
++AA GG +FGYD GV G + F K+F + C L S
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTS--------IGACAASTVLSGLIVS 53
Query: 89 SLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGC 146
+ L + FA R GR+ ++LI + F+ G A+ + MLIVGR+++G
Sbjct: 54 IFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGL 113
Query: 147 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISL 206
GVG + VP+++SEIAP ++RG L L+QL +T GIL A ++ G + + GWRI L
Sbjct: 114 GVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPL 173
Query: 207 GLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEAS-RI 265
GL +PA LL +G L + ++P L+ +G+ EE +AVL K+RG ++ E E ++ R
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERS 233
Query: 266 AKEVKHPFRNLLKRRNRPQ-LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYS 324
+ K + L + + Q L++ V LQIFQQ TGINAI +Y+P +F+TLG S
Sbjct: 234 VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LV 291
Query: 325 TVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 384
T+I G VN + T ++I+ VD+ GRR LLL M + V+ + L K G
Sbjct: 292 TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK------SKG 345
Query: 385 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 444
++ ++ I FI+ FA WGP+ W+I SE FPL R ++ N L F+I F
Sbjct: 346 AGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFP 405
Query: 445 SMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTE 486
+ +FL F+G +++ FVFF +PETK +EE+ E
Sbjct: 406 IITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-115
Identities = 180/489 (36%), Positives = 250/489 (51%), Gaps = 26/489 (5%)
Query: 7 SASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRR 66
AS V + ++AA GGLMFGYD GV GG A+P F KF
Sbjct: 8 DASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS----- 62
Query: 67 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVA 126
+N Y + L S + G FA + + R GR+ ++LI + F+ G
Sbjct: 63 ------ANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAI 116
Query: 127 FNVA---AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183
A ++ MLIVGR+LLG GVG A+ VP++LSEIAP +RG L L+QL +T GI
Sbjct: 117 LMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176
Query: 184 LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVL 243
L A G + + GWRI LGL IPA LL +G + ++P L+ +GR EE + L
Sbjct: 177 LVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL 236
Query: 244 RKIRGTDKIEPEFLELVEASRIAKEVKHPFRNL-------LKRRNRPQLVIAVALQIFQQ 296
++RGT + E L+ +E I + ++ RR R +L + V LQ FQQ
Sbjct: 237 ARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQ 296
Query: 297 CTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAG 356
TGINAIM+Y+P +F+ G + ++I GAVN T V+I+ VD+ GRR LLL
Sbjct: 297 FTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356
Query: 357 IQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF 416
M + V+ I+ V S+ V I FI+ FA WGP+ W+I SE F
Sbjct: 357 AGMAICLFVLGILGASFVTGSSKSSGNVAIV----FILLFIAFFAMGWGPVPWVIVSEIF 412
Query: 417 PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG-IFLFFSGWVLIMSCFVFFLLPE 475
PL R G S+ V N L F++ F +ML G +F+FF G ++ FV+F LPE
Sbjct: 413 PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472
Query: 476 TKNVPIEEM 484
TK +EE+
Sbjct: 473 TKGRTLEEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 4e-63
Identities = 142/498 (28%), Positives = 228/498 (45%), Gaps = 67/498 (13%)
Query: 26 IVSCIMAAT-GGLMFGYDVGV-SGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL 83
I S + AT GGL+FGYD V SG V + L F Q + L
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVES----LNTVF-----VAPQNLSESAAN----SL 56
Query: 84 QLFTSSLYLAG-LTATFFASYTTRRLGRRLTMLIAGI-FFIAGVA--------FNVAAQN 133
F + L G + Y + R GRR ++ IA + FFI+ + ++ N
Sbjct: 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDN 116
Query: 134 LAMLI---VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN 190
+ + RI+ G GVG A+ P++++EIAP IRG L Q + G L VN
Sbjct: 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVN 176
Query: 191 YGTSHIKS-QW----GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRK 245
Y + W GWR IPA L + V +TP L+ RG+ E+ + +LRK
Sbjct: 177 YFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK 236
Query: 246 IRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNR------PQLVIAVALQIFQQCTG 299
I G A++ +E+KH + K + +VI V L +FQQ G
Sbjct: 237 IMGNTL----------ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVG 286
Query: 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQM 359
IN +++YAP +FKTLG +L T+I G +N+ T+++I +VDK GR+ L + + M
Sbjct: 287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM 346
Query: 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419
+ + + ++ ++ + +++AFA SWGP+ W++ SE FP
Sbjct: 347 AIGMFSLG----------TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396
Query: 420 TRSAGQSVTVCVNLLFTFVIAQAFLSM------LCHFKFGIFLFFSGWVLIMSC-FVFFL 472
R ++ V + + ++ F M + HF G + G + +++ F++
Sbjct: 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456
Query: 473 LPETKNVPIEEMTERVWK 490
+PETK +EEM E +W+
Sbjct: 457 VPETKGKTLEEM-EALWE 473
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-17
Identities = 110/422 (26%), Positives = 176/422 (41%), Gaps = 59/422 (13%)
Query: 79 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR----LTMLIAGIFFIAGVAFNVAAQNL 134
D + L S ++ L +F Y + R GR+ L+ L+ + + AF + N
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGV-LTAF---SPNY 180
Query: 135 AMLIVGRILLGCGV-GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193
+ +V R+L+G G+ G QAV L E P + R + L Q+ ++G++ LV Y
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239
Query: 194 SHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIE 253
WR +P L + S V ++P LI +GR EE +L++I + +
Sbjct: 240 PD------WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK 293
Query: 254 P--EFLEL-VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 310
E L L +E + + ++ F +L + N + + + + F A +Y VL
Sbjct: 294 LPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-----TTAFSYYGLVL 348
Query: 311 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR----MLLLEAGIQMFLSQTVI 366
GG+ L I+G V + + L+++ +D++GRR LL AG+ + L V
Sbjct: 349 D-LGNLGGNIYL-DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP 406
Query: 367 AIILGIKVKDHSEDLH---TGFAVLVVIMIC-TFISAFAWSWGPLGWLIPSETFPLETRS 422
DL+ T AVL I F + L +E +P R+
Sbjct: 407 ------------VDLYFLRTALAVLGKFGITSAFQMVY---------LYTAELYPTVVRN 445
Query: 423 AGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF-FSGWVLIMSCFVFFLLPETKNVPI 481
G V VC + I FL L + L F G L+ F LPETK VP+
Sbjct: 446 LG--VGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPL 502
Query: 482 EE 483
E
Sbjct: 503 PE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 45/345 (13%)
Query: 83 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 142
+ L ++ L A A + R GRR +LI + F G+ + A +L +L+V R+
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 143 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGW 202
L G G G A +++ P RG L +G L+ + S +GW
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL---GGLLASLFGW 150
Query: 203 RISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 262
R + + I A L V + L+ P +R + E
Sbjct: 151 RAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV----------------- 193
Query: 263 SRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASL 322
P LL R L++A+ L F A++ Y P+ + LG +
Sbjct: 194 ---------PAWKLLLRDPVLWLLLALLLFGF----AFFALLTYLPLYQEVLGLSALLAG 240
Query: 323 YSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 382
+ G + + L+ D++GRR LL A + + L+ +A++
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT---------E 291
Query: 383 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 427
+ +LV +++ F + + P + S+ P E R +
Sbjct: 292 SSLWLLVALLLLGFGAGLVF---PALNALVSDLAPKEERGTASGL 333
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 83 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRI 142
L S+ L + A Y + R GRR +L+ + F G A +L +L+VGR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 143 LLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGW 202
LLG G G A ++E P + RG LF +G L L+ + GW
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGW 152
Query: 203 RISLGLAGIPAALLTVGSLLV 223
R + I LL + L +
Sbjct: 153 RWLFLILAILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 71/346 (20%), Positives = 127/346 (36%), Gaps = 57/346 (16%)
Query: 135 AMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS 194
+L++ R++ G +G L+L+E AP RG Q+ +G+L A L S
Sbjct: 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156
Query: 195 HIKS-----QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGT 249
++ +WGWRI L L+ L R EE
Sbjct: 157 YLLGDDALLEWGWRIPF-LVSAVLVLI------------GLYLRRNLEE----------- 192
Query: 250 DKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 309
P F + E K+ + P L ++R ++ + L I T +
Sbjct: 193 ---TPVFEKAQEK---HKKKRGPIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLPTY 245
Query: 310 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 369
L +TLG +++L +++ + ++ +S D++GRR +L+ + L + +
Sbjct: 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA 305
Query: 370 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV 429
L D + +++ I GP+G +P E FP E R G S+
Sbjct: 306 L--------LDSGSFTLFFFLVLGMALIGGM--YTGPMGSFLP-ELFPTEVRYTGASLAY 354
Query: 430 CV-NLLF---TFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 471
+ +F IA A ++M + G+ L +
Sbjct: 355 NLAGAIFGGFAPYIAAALVAM------TGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 19/284 (6%)
Query: 99 FFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLF 158
F R+GRR +L + + F A N+ L++ R L G G+G +
Sbjct: 70 LFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL 129
Query: 159 LSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 218
+SE AP R RG L IG + + +GWR + GI LL +
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL---AGWLIPVFGWRSLFYVGGIAPLLLLL 186
Query: 219 GSLLVTDTPNS---LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN 275
LL+ P S L+ + R E + ++ I + E + L E + F+
Sbjct: 187 --LLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKA 242
Query: 276 LLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLS 335
L + + V+ L G+ + + P L LGF S + + V+
Sbjct: 243 LFQGKTARITVLLWLLYFMLL-VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIG 301
Query: 336 TLVSIYSVDKVGRR---MLLLEAGIQMFL-----SQTVIAIILG 371
+++ + D++G R +LLL + L + ++LG
Sbjct: 302 SIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 16/192 (8%)
Query: 283 PQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIY 341
+L++ +AL F G ++ Y P+ + LG + + + G +L L+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 342 SVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 401
D++GRR LLL G L + ++L + + +LV +++ F FA
Sbjct: 234 LSDRLGRRRLLLLIG---LLLAALGLLLLAL--------APSLALLLVALLLLGFGLGFA 282
Query: 402 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFFSG 460
+ SE P E R + L + +L + G+FL +
Sbjct: 283 FPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA 339
Query: 461 WVLIMSCFVFFL 472
L+ + + L
Sbjct: 340 LALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 4/140 (2%)
Query: 85 LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG-IFFIAGVAFNVAAQNLAMLIVGRIL 143
L S L G+ + RLGRR +L+ G + G+ A +LA+L+V +L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 144 LGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWR 203
LG G+GFA A+ SE+AP RG + LF ++G L+ + G+
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLLLDTGGYG 331
Query: 204 ISLGLAGIPAALLTVGSLLV 223
+ A L + LL+
Sbjct: 332 GVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 62/321 (19%), Positives = 102/321 (31%), Gaps = 57/321 (17%)
Query: 92 LAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVG-F 150
L + T RL RR +L FI + A + A+L++ R L G G F
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 151 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAG 210
+ A L + P + L ++F +T+ + V GT + +GWR +
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVF-TGLTLATVLG--VPLGT-FLGQLFGWRATFLAIA 174
Query: 211 IPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVK 270
+ A L + L+ S I+ +
Sbjct: 175 VLALLALLLLWK------------------------------------LLPPSEISGSLP 198
Query: 271 HPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGA 330
P R LL+ RP +++ + + P L GF SA + G
Sbjct: 199 GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGI 258
Query: 331 VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 390
+ L+ D+ RR L+ L + + L TG A +
Sbjct: 259 AGFIGNLLGGRLADRGPRRALIA-----ALLLLALALLAL----------TFTG-ASPAL 302
Query: 391 IMICTFISAFAWSWGPLGWLI 411
+ F+ FA+S G
Sbjct: 303 ALALLFLWGFAFSPALQGLQT 323
|
Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 98/445 (22%), Positives = 164/445 (36%), Gaps = 78/445 (17%)
Query: 99 FFASYTTRRLGRR----LTMLIAGIFFIA-GVAFNVAAQNLAMLIVG-RILLGCGVGFAN 152
F + +LGR+ + ++I I +A G++ + +++ + R LG G+G
Sbjct: 74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133
Query: 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV---------------NYGTSHIK 197
+ SE A + RG + GIL +V S
Sbjct: 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTG 193
Query: 198 S-----QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKI 252
S + WRI +G +PA L L + +TP + + E A KI
Sbjct: 194 SCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI 253
Query: 253 EPEFLELVEASRIAKEVKHP-------FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 305
E E E+ +AS V+ P F + K R+ + ++ A F +
Sbjct: 254 EAEPDEVEKAS---TAVEVPKASWSDFFTHFFKWRH-GKHLLGTAGSWFLLDIAFYGVNL 309
Query: 306 YAPVLFKTLGFGGSAS---LYSTVITGAV-NVLSTL--------VSIYSVDKVGRRMLLL 353
V+ +G+ A+ Y + AV N++ L V+++ VD +GR+
Sbjct: 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP--- 366
Query: 354 EAGIQM--FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGP--LGW 409
IQ+ F TV+ +LG S GF + V + F + F GP +
Sbjct: 367 ---IQLMGFFILTVLFFVLGFAYNHLS---THGFLAIYV--LAQFFANF----GPNATTF 414
Query: 410 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV----LIM 465
++P E FP RS ++ + FL + H W+ I
Sbjct: 415 IVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474
Query: 466 SCFVF------FLLPETKNVPIEEM 484
+ F+F L+PETK +EE+
Sbjct: 475 ALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 75 YCKYD--NQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAG--VAFNV 129
Y Y N GL + +A + + +R G++ T L+ + G + F +
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAP-------TRIRGGLNILFQLNVTIG 182
+L + +V +L G G+G A L+++ R G L+ +G
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLG 367
Query: 183 ILFANLV----------NYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 222
+ + + I L IPA L + L+
Sbjct: 368 GALGGAIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 100 FASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFL 159
+ T R GR+ +L+ F+ A + N+ +LI+ R L G G FA A +
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76
Query: 160 SEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 215
++I P RG L + +G L + + GWR I A
Sbjct: 77 ADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWRAPFLFLAILALA 129
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 27/196 (13%)
Query: 80 NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIA----GIFFIAGVAFNVAAQNLA 135
+ G + +YL + FF +LGR+ +LI G F F+ Q
Sbjct: 201 DSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF----FSSFVQGYG 256
Query: 136 MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195
+ R+L G G+G A V + +E RG + IG ++A + +
Sbjct: 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA--- 313
Query: 196 IKSQWGWRISLGLA-------------GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAV 242
I +GW +G A P + ++P +E G+ +E +
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMI 373
Query: 243 LRKIRGTD---KIEPE 255
L+ I T+ K PE
Sbjct: 374 LKLIHDTNMRAKGHPE 389
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting nuclear protein NIP30 | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 236 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 285
FEE + + RG D+ E EFL+ VE SR A E K KR +L
Sbjct: 52 FEEKFKLKNQFRGLDEDEVEFLDEVEESRRAAEKK------RKREEAEEL 95
|
This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this. Length = 99 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 92 LAGLTATFFASYTTRRLGRRLTMLIAGIFFI---AGVAFNVAAQNLAMLIVGRILLGCGV 148
L G + RLGRR +L+A + I G+A ++ L+V +LLG G
Sbjct: 248 LLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGA 307
Query: 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFA 186
G A+ +S++AP RG + L+ ++G
Sbjct: 308 GLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.83 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.77 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.76 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.54 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.53 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.5 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.5 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.48 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.46 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.45 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.45 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.44 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.4 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.4 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.38 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.37 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.37 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.34 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.33 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.33 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.31 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.31 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.3 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.28 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.26 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.26 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.25 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.24 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.24 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.23 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.23 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.23 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.21 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.21 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.21 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.2 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.2 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.2 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.19 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.17 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.16 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.15 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.14 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.14 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.13 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.1 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.08 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.08 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.08 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.07 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.06 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.06 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.04 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.03 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.03 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.97 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.95 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.93 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.9 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.89 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.88 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.85 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.83 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.83 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.78 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.77 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.7 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.7 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.7 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.65 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.63 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.62 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.58 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.56 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.53 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.47 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.46 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.42 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.36 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.35 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.29 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.25 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.18 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.16 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.11 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.09 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.08 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.06 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.99 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.98 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.95 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.62 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.51 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.51 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.37 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.32 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.32 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.02 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.84 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.67 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.58 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.05 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.35 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.31 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.22 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.21 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.2 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.04 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.72 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.5 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.93 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.65 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.73 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.3 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.66 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 90.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 87.24 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.57 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.76 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 83.84 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=365.30 Aligned_cols=460 Identities=30% Similarity=0.488 Sum_probs=392.4
Q ss_pred cccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHH
Q 009833 19 AKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTAT 98 (524)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~ 98 (524)
+++.++...+++.++++++.+||..+..++. -...++|.++++.+||+...+++ .-+...+.+.+++.+|.++|+
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~--~~~~lwS~~vs~f~iG~~~Gs 77 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDS--TLDLLWSLIVSIFFIGGMIGS 77 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888889999999999998744 47888899999999998544432 123457888999999999999
Q ss_pred HhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHH
Q 009833 99 FFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA---QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILF 175 (524)
Q Consensus 99 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 175 (524)
++.|.++||+|||..+.++.++..++.+++.++ +++++++++|++.|+..|......+.++.|..|++.||....+.
T Consensus 78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~ 157 (485)
T KOG0569|consen 78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL 157 (485)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence 999999999999999999999988888777654 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHh-cCChhHHHHHHHHHhCCCCchH
Q 009833 176 QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIE-RGRFEEGKAVLRKIRGTDKIEP 254 (524)
Q Consensus 176 ~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
+.+..+|.+++..++.- ..+.....|++.+.+..+++++.+++..++||||+|+.. +++.++|++.++.+++.++.++
T Consensus 158 ~~~~~~g~ll~~~~~l~-~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 158 QIGVVIGILLGQVLGLP-SLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHHccH-HhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh
Confidence 99999999999877421 223344579999999999999999999999999999998 8999999999999999987766
Q ss_pred HHHHHHHHHHHh---hhhccchhhhcccCc-hhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 009833 255 EFLELVEASRIA---KEVKHPFRNLLKRRN-RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGA 330 (524)
Q Consensus 255 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 330 (524)
+.++..++.+++ ++++.+++++++++. +++..+.+.+....++.+.+...+|...++++.|++..++.+.....++
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 655544433332 225667899998755 4456677788888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccce
Q 009833 331 VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 410 (524)
Q Consensus 331 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
...+..+++.++.||.|||++++.+..++.+..+++.......... .....+..+.+.+.+...++.+.+|+.+.
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-----GSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 9999999999999999999999999999988888776665332110 11223345678888999999999999999
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcccCCCCChHHhHHHHH
Q 009833 411 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVW 489 (524)
Q Consensus 411 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (524)
+.+|++|++.|..+.++....+++..++....+..+.+..|...++.+.+.+.+..+..++.+||||+|+..|+.++..
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998899999999999999999999999999999844433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=357.51 Aligned_cols=441 Identities=17% Similarity=0.210 Sum_probs=315.7
Q ss_pred cccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHH
Q 009833 17 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLT 96 (524)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 96 (524)
++.+..++++.+++++.++.+.+|||.+..+.+ .|.+.++++ ..+.+.++.+.+++.+.+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ig~~i 71 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLV--TKMLGYVYY------------HGKGPLPSSVSAAVNGSASIGTLA 71 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc------------cCcccchHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999998844 455555431 011255677889999999999999
Q ss_pred HHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcch
Q 009833 97 ATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 170 (524)
Q Consensus 97 ~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 170 (524)
+++++|+++||+|||+++.++++++.+++++++++++ ++.++++|+++|++.|...+....++.|++|+++|++
T Consensus 72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~ 151 (502)
T TIGR00887 72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA 151 (502)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999988765 7899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc-C-------------------CCCcchHHHHHhhHHHHHHHHHHhhcccCChHHH
Q 009833 171 LNILFQLNVTIGILFANLVNYGTSH-I-------------------KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 230 (524)
Q Consensus 171 ~~~~~~~~~~lG~~~~~~~~~~~~~-~-------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 230 (524)
++++.+....+|.++++.++..... . ...++||++|.+.++++++..+..+++||||+|+
T Consensus 152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l 231 (502)
T TIGR00887 152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999988654321 1 1125899999999998888877788899999999
Q ss_pred HhcCChh-HHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccC---chhHHHHHHHHHHHHHhhhHHHHHHh
Q 009833 231 IERGRFE-EGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRR---NRPQLVIAVALQIFQQCTGINAIMFY 306 (524)
Q Consensus 231 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (524)
..+++.+ ++.+.+++....+..++ .++.++.++.++..+.+++++++.+ +.++.++.....++.....++....|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 310 (502)
T TIGR00887 232 ADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN 310 (502)
T ss_pred HHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 9887764 46666666543321111 1111111011111123567776532 22222333333444444445566778
Q ss_pred HHHHHHhcCCCCcchhH------------HHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 307 APVLFKTLGFGGSASLY------------STVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 374 (524)
Q Consensus 307 ~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (524)
.|.++++.|++....+. ...+..++.+++.++.++++||+|||+.+..+..++.++..++......
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-- 388 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-- 388 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 89988888887543221 2333445667788899999999999999888877777666555543210
Q ss_pred cCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 009833 375 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF---- 450 (524)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 450 (524)
....... ...+.+...+..+..++.+.+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+..
T Consensus 389 -------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (502)
T TIGR00887 389 -------LSTHGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK 459 (502)
T ss_pred -------cchhHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc
Confidence 0011111 112222222344455677778899999999999999999999999999999999998843
Q ss_pred ------ch-hhHHHHHHHHHHHHHHHHHhcccCCCCChHHh
Q 009833 451 ------KF-GIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 484 (524)
Q Consensus 451 ------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (524)
+. ..++++++++++.+ +..+++||++++++||+
T Consensus 460 ~~~~~~~~~~~~~i~~~~~~~~~-i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 460 GYPTGIWMGHVLEIFALFMFLGI-LFTLLIPETKGKSLEEL 499 (502)
T ss_pred cccccccchHHHHHHHHHHHHHH-HHheEeccCCCCCHHhh
Confidence 22 34455555555444 34567799999988776
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=346.89 Aligned_cols=443 Identities=28% Similarity=0.502 Sum_probs=324.8
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
..+.+...++++.++.+.+|||..+++ ...|.+.++|.+ ...++++++..+.+++.+++.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVIS--GTVESLNTVFVA---------PQNLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceeh--HhHHHHHHHhcc---------cccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 345567777888889999999999998 455788888733 234455899999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCc
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------------QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIR 168 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 168 (524)
+|+++||+|||++++++.++++++.++++++ +.++.++++|+++|++.|...+...++++|++|+++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998888763 3356788999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhccc-----CCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHH
Q 009833 169 GGLNILFQLNVTIGILFANLVNYGTSH-----IKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVL 243 (524)
Q Consensus 169 ~~~~~~~~~~~~lG~~~~~~~~~~~~~-----~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 243 (524)
++++++.+.+..+|.++++.++..... ..+.++||+.|++.+++.++..+..+++||+|+++..+++.+++++..
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 999999999999999998877554321 234579999999998888887766778999999998888888877777
Q ss_pred HHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhH
Q 009833 244 RKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLY 323 (524)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 323 (524)
++..+.++.+...++..+..+.++ ...+..+. ......+.......+.+..+.+...++.|.+.++.|.+......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 310 (479)
T PRK10077 235 RKIMGNTLATQALQEIKHSLDHGR---KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL 310 (479)
T ss_pred HHHcCChhHHHHHHHHHHHHHHhh---hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH
Confidence 766544332222222111111000 00111111 11111122222333344444556667888888889988877777
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc
Q 009833 324 STVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
.....++..+++.++.++++||+|||+.+..+.+++.++.+++..... ...........++.+..++...
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY----------TQAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh----------cCcccHHHHHHHHHHHHHHhcc
Confidence 778888899999999999999999999999988888887766654321 1111122233334444444444
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH------hhhchh-hHHHHHHHHHHHHHHHHHhcccC
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML------CHFKFG-IFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
..|..+.+++|.+|++.|+++.|+.+..++++.++++.+++.+. +..++. .+.+++..+.+.+++.+++.||+
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 55677788899999999999999999999999999987776554 344433 44555555556666666678899
Q ss_pred CCCChHHhHHHHH
Q 009833 477 KNVPIEEMTERVW 489 (524)
Q Consensus 477 ~~~~~~~~~~~~~ 489 (524)
++++.+|. ++..
T Consensus 461 ~~~~~~~~-~~~~ 472 (479)
T PRK10077 461 KGKTLEEM-EALW 472 (479)
T ss_pred CCCCHHHH-HHHH
Confidence 99888877 4443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=356.04 Aligned_cols=424 Identities=17% Similarity=0.209 Sum_probs=321.7
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
..+++|.++++++++.+..+++...++ ..+|.+.+++ +++..+.+++.++++++.++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is--~ilp~i~~~~-----------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVG--FVLPSAEKDL-----------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999998887 5568998998 999999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
+|+++||+|||++++++++++++++++++++++++.++++|++.|++.|+..++..+++.|++|+++|++.+++..+++.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc----------CCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCC
Q 009833 181 IGILFANLVNYGTSH----------IKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTD 250 (524)
Q Consensus 181 lG~~~~~~~~~~~~~----------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 250 (524)
+|.++++.++..+.. .....+||+.+++.+++.++.+++.+++||||+|+..+++.+++.+.+++++..+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999887543321 1123579999999998888877778889999999999999999999999998765
Q ss_pred Cch---HH-H---HHHHHHHHH------hhhh------------------ccchhhhcccCchhHHHHHHHHHHHHHhhh
Q 009833 251 KIE---PE-F---LELVEASRI------AKEV------------------KHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299 (524)
Q Consensus 251 ~~~---~~-~---~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
... ++ . ...+..... ++.. ..+++++++++.+++ .+.+.+.+++....
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-tl~l~~~wf~~~~~ 460 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREI-TIKLMGVWFTLSFG 460 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHH-HHHHHHHHHHHHHH
Confidence 321 11 0 000000000 0000 013455665554444 55666677777788
Q ss_pred HHHHHHhHHHHHHhc------------------------------------------CC-----C---------------
Q 009833 300 INAIMFYAPVLFKTL------------------------------------------GF-----G--------------- 317 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~------------------------------------------g~-----~--------------- 317 (524)
++++..|+|.++++. |+ +
T Consensus 461 yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (742)
T TIGR01299 461 YYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVT 540 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeecc
Confidence 999999999875431 00 0
Q ss_pred C-----------------------------------------------------cchhHHHHHHHHHHHHHHhhhhhhhc
Q 009833 318 G-----------------------------------------------------SASLYSTVITGAVNVLSTLVSIYSVD 344 (524)
Q Consensus 318 ~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (524)
. ........+..++.+++.++.++++|
T Consensus 541 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D 620 (742)
T TIGR01299 541 SSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD 620 (742)
T ss_pred ccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00133355667889999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhh
Q 009833 345 KVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAG 424 (524)
Q Consensus 345 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (524)
|+|||+++..+.++.+++.+++.+. .... ..+++.+++..+.. +..+....+++|.+|++.|+++
T Consensus 621 r~GRr~~l~~~~~lsai~~ll~~~~------------~s~~--~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta 685 (742)
T TIGR01299 621 KIGRLRMLAGSMVLSCISCFFLSFG------------NSES--AMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATA 685 (742)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH------------ccHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999988888877777665543 1111 12222222222222 2335566788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 009833 425 QSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVP 480 (524)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (524)
+|+.+..+.+|++++|.+.+.+.+.. ...++++.+++.++++++.+++||++++.
T Consensus 686 ~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 686 FGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999999999999887754 33344444444444555556779988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=335.23 Aligned_cols=453 Identities=39% Similarity=0.658 Sum_probs=365.8
Q ss_pred ccchHHHHHHHHHHHhhhhhhhh--hhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCc--chhHHHHHHHHHHHH
Q 009833 20 KITPIVIVSCIMAATGGLMFGYD--VGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDN--QGLQLFTSSLYLAGL 95 (524)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~ 95 (524)
...+......+.+.++.+.+|++ .+..+ ...+.+.++. ... +...+. .+.+|+.+.+.++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s--~~~~~~~~~~-~~~-----------~~~~~~~~~~~s~~~s~~~lga~ 103 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYDGDIGGIS--GALDFLQRFA-SLY-----------DLSTGEYSVRQGLLTSILNLGAL 103 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcccccccch--hhHHHHHhcc-ccc-----------ccccchhHHHHHHHHHHHHHHHH
Confidence 34456677888888899999998 33443 2223333332 110 112222 566999999999999
Q ss_pred HHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHH
Q 009833 96 TATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILF 175 (524)
Q Consensus 96 i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 175 (524)
++++++|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCC--CCch
Q 009833 176 QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGT--DKIE 253 (524)
Q Consensus 176 ~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~--~~~~ 253 (524)
+....+|..++..++...... . ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.++++++. .+.+
T Consensus 184 ~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchH
Confidence 999999999997776555543 2 68999999999999998888888999999999999999999999999983 3444
Q ss_pred HHHHHHHHHHHHhh---hhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 009833 254 PEFLELVEASRIAK---EVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGA 330 (524)
Q Consensus 254 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 330 (524)
.+.++.+.....+. +.+..+++++++...++.++.+.+..+.++.+.....+|.+.+++..|.+... .....+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~ 340 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGV 340 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHH
Confidence 44433331111111 11224667777667777888999999999999999999999999998887554 666777788
Q ss_pred HHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccce
Q 009833 331 VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 410 (524)
Q Consensus 331 ~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
..+++..++.++.||+|||+.++.+...+.++.++++........... ......+..+...+++...+..+..|+.+.
T Consensus 341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~ 418 (513)
T KOG0254|consen 341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWV 418 (513)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC--cccchhHHHHHHHHHHHHHHhcccccchhh
Confidence 888888889999999999999999999999999988877654322110 133456777888888889999999999999
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHH-HHHHhcccCCCCChHHhHHHH
Q 009833 411 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSC-FVFFLLPETKNVPIEEMTERV 488 (524)
Q Consensus 411 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 488 (524)
+.+|.+|.+.|+++.++....+++..++....+....+..+ ...+..+.+.+.+... +.++++||+++++++|+ ++.
T Consensus 419 ~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei-~~~ 497 (513)
T KOG0254|consen 419 IVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEI-NEL 497 (513)
T ss_pred hhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHH-HHH
Confidence 99999999999999999999999999998888887777765 5667777777777666 78889999999999999 554
Q ss_pred Hccc
Q 009833 489 WKQH 492 (524)
Q Consensus 489 ~~~~ 492 (524)
.+++
T Consensus 498 ~~~~ 501 (513)
T KOG0254|consen 498 FEEG 501 (513)
T ss_pred HHcC
Confidence 4433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=328.83 Aligned_cols=448 Identities=38% Similarity=0.638 Sum_probs=323.1
Q ss_pred ccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHH
Q 009833 20 KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATF 99 (524)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 99 (524)
+.+++.+..++++.++.+..+++...++ ..+|.+..++.- +...+-+.+..+.+++.+++.++..++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIG--GALALPAFEFKF---------TSANSDSYSSSLWGLVVSIFLVGGFIGAL 89 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhh--hhhhcHHHHHhc---------CCcccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788899998887 445666666610 01111135689999999999999999999
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHH
Q 009833 100 FASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA---QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176 (524)
Q Consensus 100 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 176 (524)
++|+++||+|||++++++.+++.++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++.+
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 169 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQ 169 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence 99999999999999999999999999998654 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHH
Q 009833 177 LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEF 256 (524)
Q Consensus 177 ~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (524)
.+..+|.++++.++.......+..+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....++.+.+.
T Consensus 170 ~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR00879 170 LAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHH
Confidence 99999999999995111344456799999999777777666667789999998877777777666665554433322221
Q ss_pred HHHHHH-----HHHhhhhccchhhhcccC--chhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 009833 257 LELVEA-----SRIAKEVKHPFRNLLKRR--NRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITG 329 (524)
Q Consensus 257 ~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 329 (524)
.+..+. ....+..+..+.+.++.. ..++.++...+..+...........+.|.+.++.|++..+.+.......
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 329 (481)
T TIGR00879 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329 (481)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 111000 001111122234444322 2345556566666666555666778889999999999988888889999
Q ss_pred HHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccc
Q 009833 330 AVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 409 (524)
Q Consensus 330 ~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (524)
++.+++.++.+++.||++||+.+..+..+..++.+.+........... ........+....++..+++.+..+...
T Consensus 330 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (481)
T TIGR00879 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS----SKSSGNVAIVFILLFIAFFAMGWGPVPW 405 (481)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc----ccchhHHHHHHHHHHHHHHHccccCeeh
Confidence 999999999999999999999988887776666665553221100000 0001223333444445555555667777
Q ss_pred eeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHHhcccCCCCChH
Q 009833 410 LIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIF-LFFSGWVLIMSCFVFFLLPETKNVPIE 482 (524)
Q Consensus 410 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (524)
.+..|.+|++.|+++.++.+...++++++++.+.+.+.++.++... +..++++++.+++.+++.+|+++++.+
T Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 406 VIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 7778999999999999999999999999999999999988776544 444445455555555666777665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=324.23 Aligned_cols=403 Identities=16% Similarity=0.203 Sum_probs=275.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCc--chhHH--HHHHHHHHHHHHHHhhH
Q 009833 27 VSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDN--QGLQL--FTSSLYLAGLTATFFAS 102 (524)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~l~~~i~~~~~g 102 (524)
...+.+.++.++++||..+++ ...|.+.++|+|+ .++ ..++. +.++.++++.++++++|
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~--~~~~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~ig~~~~G 78 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYG--FVAYALGKVFFPG---------------ADPSVQMIAALATFSVPFLIRPLGGLFFG 78 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788999999999988 5568888888432 112 11222 25788899999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHH
Q 009833 103 YTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAM--------LIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNIL 174 (524)
Q Consensus 103 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 174 (524)
+++||+|||+++.+++++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.++
T Consensus 79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 158 (490)
T PRK10642 79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW 158 (490)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence 9999999999999999999999999999999874 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc-C----CCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCC
Q 009833 175 FQLNVTIGILFANLVNYGTSH-I----KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGT 249 (524)
Q Consensus 175 ~~~~~~lG~~~~~~~~~~~~~-~----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 249 (524)
...+..+|.++++.+...... + ...+|||++|++.++++++..++..++||+|+|...+++.++..
T Consensus 159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~--------- 229 (490)
T PRK10642 159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD--------- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc---------
Confidence 999999999888876543322 1 23589999999988776665556677999998753322111100
Q ss_pred CCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHH
Q 009833 250 DKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVIT 328 (524)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 328 (524)
.+...++++.++++++++ .++.... .....+.....++.+..|.|.+++ .+|++...........
T Consensus 230 ------------~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 295 (490)
T PRK10642 230 ------------REGLQDGPKVSFKEIATK-HWRSLLT-CIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAI 295 (490)
T ss_pred ------------cccccccccCCHHHHHHH-hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000001123345556543 2222222 222333344556677788998885 4788887777777778
Q ss_pred HHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccccc
Q 009833 329 GAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 408 (524)
Q Consensus 329 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
.++.+++.++.|+++||+|||+.+..+.+...+....+.... ............++.....+... ...
T Consensus 296 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-g~~ 363 (490)
T PRK10642 296 MIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-----------NSNVIGLIFAGLLMLAVILNCFT-GVM 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 888999999999999999999988776654333332221111 11111111111122211111111 223
Q ss_pred ceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHhcccCCCCCh
Q 009833 409 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLLPETKNVPI 481 (524)
Q Consensus 409 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (524)
..+.+|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ +.....+..+..+.+++..+++||++++..
T Consensus 364 ~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 364 ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3455789999999999998777777888899999999887654 333333333334444445556788766544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=298.09 Aligned_cols=408 Identities=16% Similarity=0.128 Sum_probs=306.8
Q ss_pred ccccccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHH
Q 009833 14 GVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLA 93 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~ 93 (524)
+++.++..+++++.+.+.+.+++..+.+..-.++ .++|.++++. ++|.+|+|++.+.++++
T Consensus 16 ~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~-----------------~lsk~~lG~i~s~f~i~ 76 (448)
T COG2271 16 ASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDG-----------------GLSKTQLGILGSAFSIT 76 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhc-----------------CCCHHHHHHHHHHHHHH
Confidence 3344555667788888888899988888888887 7889999998 89999999999999999
Q ss_pred HHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHH
Q 009833 94 GLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNI 173 (524)
Q Consensus 94 ~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 173 (524)
|.++.++.|.++||.++|+.+.+++++.++.+++++++++.+.+.+..++.|..+|.-+|.+...++.|++++|||+..+
T Consensus 77 YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~s 156 (448)
T COG2271 77 YGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWS 156 (448)
T ss_pred HHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCc
Q 009833 174 LFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKI 252 (524)
Q Consensus 174 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (524)
+.+.+.++|..+.+++..+ +.+..+.+||..|++.++++++..+. ++..+|+|+.. +- ++.
T Consensus 157 iWn~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL--------------P~i 218 (448)
T COG2271 157 IWNTSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL--------------PPI 218 (448)
T ss_pred EehhhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC--------------CCH
Confidence 9999999999999999533 55666679999999999999888777 55588888421 10 011
Q ss_pred hHHHHHHHHH-HHHhhhhccchhhhc-ccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 009833 253 EPEFLELVEA-SRIAKEVKHPFRNLL-KRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITG 329 (524)
Q Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 329 (524)
++...+..+. +++++.+..+.++++ +.-...+.+|.+++..+.....-+.+..|.|.|+.+ .|++...+....+.+-
T Consensus 219 e~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE 298 (448)
T COG2271 219 EEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFE 298 (448)
T ss_pred HHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111011111 011111112333332 222233348888888888888889999999988854 8999999999999999
Q ss_pred HHHHHHHhhhhhhhccc--CchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccc
Q 009833 330 AVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPL 407 (524)
Q Consensus 330 ~~~~~~~~~~g~l~d~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (524)
.++++|.++.|+++||+ |||....+.+.+.....++..... +.. .+.....++...+++..+..-+
T Consensus 299 ~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-----------~~~-~~~l~~~~l~~iGf~IyGPqmL 366 (448)
T COG2271 299 VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-----------PNG-SYLLDAILLFIIGFLIYGPQML 366 (448)
T ss_pred HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-----------CCc-cHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999996 566555443333322222222211 212 2233333333333333333334
Q ss_pred cceeecccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 408 GWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
.-..+.|..|++..|++.|+...++++ |...+....+++.|.+||...+++..+..+.+++++
T Consensus 367 iGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 367 IGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 555667999999999999999999999 888888999999898887755555544444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=290.23 Aligned_cols=373 Identities=18% Similarity=0.174 Sum_probs=288.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
..+..++...++.|..|.+..+.. ..+|++.+|+ |+|..+.|++.|.|.+++.+++++...
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~--gLLp~iA~dl-----------------~vs~~~aG~lis~yAl~~ai~ap~l~~ 70 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPV--GLLPPIAADL-----------------GVSEGAAGQLITAYALGVALGAPLLAL 70 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHH--hchHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777788888887766 5679999999 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 183 (524)
+.||+.||++++..+.++.++++++++++||+.++++|++.|++.|.+++...++..+..|+++|++++++...+..++.
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHH
Q 009833 184 LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 262 (524)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
++|.+++.+++ +.+|||..|++.++++++..+. +..+| |+..
T Consensus 151 v~GvPLGt~ig---~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~-------------------------------- 193 (394)
T COG2814 151 VLGVPLGTFLG---QLFGWRATFLAIAVLALLALLLLWKLLP--PSEI-------------------------------- 193 (394)
T ss_pred HHhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--------------------------------
Confidence 99999955544 5689999999999999888777 56688 2100
Q ss_pred HHHhhhhccc---hhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHh-HHHHHHhcCCCCcchhHHHHHHHHHHHHHHhh
Q 009833 263 SRIAKEVKHP---FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY-APVLFKTLGFGGSASLYSTVITGAVNVLSTLV 338 (524)
Q Consensus 263 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (524)
.++++.+ ..+.+|++. ++...+..++.+.+.+....| .|.+.+..|++....++....++++.++|..+
T Consensus 194 ---~~~~~~~~~~~~~~l~~p~----v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~ 266 (394)
T COG2814 194 ---SGSLPGPLRTLLRLLRRPG----VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL 266 (394)
T ss_pred ---CCCCCcchhHHHHHhcCch----HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 0111122 334445554 444444444444444544444 45555669999999999999999999999999
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc
Q 009833 339 SIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418 (524)
Q Consensus 339 ~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 418 (524)
+|++.|| +.|+.+.....++.+..+.+.+.. .+.+..+....+++....... ........+. -+
T Consensus 267 gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-------------~~~~~~~~~~~~wg~a~~~~~-~~~~~~~a~~-~p 330 (394)
T COG2814 267 GGRLADR-GPRRALIAALLLLALALLALTFTG-------------ASPALALALLFLWGFAFSPAL-QGLQTRLARL-AP 330 (394)
T ss_pred Hhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-------------chHHHHHHHHHHHHHHhhhhh-hHHHHHhccc-CC
Confidence 9999999 888888777677776666655432 222333333333222222221 1122222342 24
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhccc
Q 009833 419 ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (524)
+.+..+.+++....++|..+|..+.|.+.|+.|+......++...+.++++.+...+
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999888877777777777666655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=368.49 Aligned_cols=441 Identities=34% Similarity=0.661 Sum_probs=344.2
Q ss_pred HHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhh
Q 009833 31 MAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 110 (524)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 110 (524)
++.++.+.+|||...++....+.....++.++ +...+.+.+..+.+++.+...+|..+|++++|.++||+||
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWS--------SSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccc--------cccccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 45667799999999987555433333333111 1111122255678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 009833 111 RLTMLIAGIFFIAGVAFNVAAQ---NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFAN 187 (524)
Q Consensus 111 r~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~ 187 (524)
|+.+.++.++..+++++.++++ +++.++++|+++|++.|...+....++.|..|+++|++..++.+.++.+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Q 009833 188 LVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAK 267 (524)
Q Consensus 188 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (524)
.++.......+..+||..+.+.++++++..+..+++||||+|+..++|.+++++.+++.++++..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 88665544444567999999999999888888889999999999999999999999997766655555544444444333
Q ss_pred hhccchhhhcccCc-hhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc
Q 009833 268 EVKHPFRNLLKRRN-RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV 346 (524)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (524)
+.+.+++++++++. +++.+..+.+..+....+......+.+.+++..+.+.. ........+...++.+++.++.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33466778887654 45555656666666666667777888888888777666 3344455667777888888999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhH
Q 009833 347 GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQS 426 (524)
Q Consensus 347 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 426 (524)
|||+.+..+...+.++.+.+...... ..+. +.......+....++...+..++.++.+.+.+|.+|++.|+++.+
T Consensus 314 GRr~~~i~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~ 388 (451)
T PF00083_consen 314 GRRKLLIIGLLLMAICSLILGIIFFL-GVSS----SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG 388 (451)
T ss_pred cccccccccccccccccccccccccc-cccc----ccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence 99999998888877777666411100 0000 001133334444555566676777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHhcccCCCCChHHhHHH
Q 009833 427 VTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTER 487 (524)
Q Consensus 427 ~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (524)
+....+++++++.+.+...+.+..+ ...+.++++++.+..++.++++|||++++++|+ ++
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei-~~ 449 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI-QE 449 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH-Hh
Confidence 9999999999999999998888877 777788888888888888899999999999998 54
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=306.79 Aligned_cols=388 Identities=19% Similarity=0.205 Sum_probs=262.0
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHH---HHHHHHHHHHHH
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQL---FTSSLYLAGLTA 97 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~---~~s~~~l~~~i~ 97 (524)
.+++++..+..++++.+.+++|...++ ...|.+.++++|+ +.+..+.+. +.+..+++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ig 79 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYS--FCSLYFAHIFFPS--------------GNTTTQLLQTAGVFAAGFLMRPIG 79 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCC--------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677788899999999988 5558899998543 344454444 444555566699
Q ss_pred HHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcc
Q 009833 98 TFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169 (524)
Q Consensus 98 ~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 169 (524)
++++|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|+
T Consensus 80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 159 (432)
T PRK10406 80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG 159 (432)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc
Confidence 99999999999999999999999999999999988764 6889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccCC-----CCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHH
Q 009833 170 GLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLR 244 (524)
Q Consensus 170 ~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 244 (524)
++.++.+.+...|.++++.+......+. +.+|||++|++.++++++...+...+||+|++.. +
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~------ 227 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R------ 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h------
Confidence 9999999988888888887654443321 2579999999988888776666666788764210 0
Q ss_pred HHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhH
Q 009833 245 KIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLY 323 (524)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 323 (524)
+.+++.++++++++++ .+.......+.....++.+..|.|.+++ .+|++..+.+.
T Consensus 228 ---------------------~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~ 283 (432)
T PRK10406 228 ---------------------ALKEAGSLKGLWRNRR---AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG 283 (432)
T ss_pred ---------------------hhcccccHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0001224556665433 1222222222223445667788888875 47888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc
Q 009833 324 STVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
......++..++.++.|+++||++||+.+.....+..+....+..... ........+.+........+.
T Consensus 284 ~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~- 352 (432)
T PRK10406 284 IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ----------NVSSPYAAFGLVMCALLIVSF- 352 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHH-
Confidence 888888888888899999999999998876655543333222211110 111111111111111111111
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHh
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 472 (524)
..+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+. .+..+ +...+++.+...+.+++..++
T Consensus 353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1123456678999999999999999988765 34456666664 45445 444444444444444444444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=317.48 Aligned_cols=379 Identities=20% Similarity=0.320 Sum_probs=278.0
Q ss_pred cCC---cchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 009833 77 KYD---NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQ 153 (524)
Q Consensus 77 ~~s---~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 153 (524)
|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.++++++++++++++.++++|++.|++.+...+
T Consensus 120 ~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 199 (505)
T TIGR00898 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199 (505)
T ss_pred cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHH
Confidence 898 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhc
Q 009833 154 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIER 233 (524)
Q Consensus 154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 233 (524)
...+++.|++|+++|+++.++...+..+|.++++.++.+.. +||+.|++.+++.++..+..+++||+|+|+..+
T Consensus 200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~ 273 (505)
T TIGR00898 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQ 273 (505)
T ss_pred HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHC
Confidence 99999999999999999999999999999999999865443 399999999998888777778899999999999
Q ss_pred CChhHHHHHHHHHhCCCCchHH--HHHHH-HHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 009833 234 GRFEEGKAVLRKIRGTDKIEPE--FLELV-EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 310 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (524)
++.+++.+.+++..+.+..+.. ..... +++..+++++.+++++++++..+...+...+.++.....++. .+.+
T Consensus 274 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 349 (505)
T TIGR00898 274 GRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG----LVLD 349 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH----Hhcc
Confidence 9999988888776554432211 11111 111111122356778888777665555444444433222222 2222
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHH
Q 009833 311 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 390 (524)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (524)
....+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++.+++... .....+...
T Consensus 350 ~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~~ 414 (505)
T TIGR00898 350 LGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV------------PVDLYFLRT 414 (505)
T ss_pred ccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc------------CCCchHHHH
Confidence 3334433 3344556677888899999999999999999988887777766655443 111111222
Q ss_pred HHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 391 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
...++...+.. ...+..+.+.+|.+|++.|+++.|+.+..+.+|++++|.+.+ +.+...+..+++++++.++. .+..
T Consensus 415 ~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 491 (505)
T TIGR00898 415 ALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLA-GILT 491 (505)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHH-HHHH
Confidence 22222222222 222455677789999999999999999999999999999988 44433344444444444444 4445
Q ss_pred HhcccCCCCChHH
Q 009833 471 FLLPETKNVPIEE 483 (524)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (524)
+++||+++++++|
T Consensus 492 ~~lpet~~~~l~~ 504 (505)
T TIGR00898 492 LFLPETKGVPLPE 504 (505)
T ss_pred HcCcCCCCCCCCC
Confidence 6789988876653
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=306.69 Aligned_cols=417 Identities=16% Similarity=0.125 Sum_probs=282.1
Q ss_pred CcCCCCCccccccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHH
Q 009833 7 SASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLF 86 (524)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ 86 (524)
|.|.+.++++.+.+.++.++.+.....++.+...++...++ ..+|.+.+++ |+|..+.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------g~s~~~~g~~ 63 (434)
T PRK11663 3 DAPLITDKHEIDARYRYWRRHILITMYLGYALFYFTRKSFN--AAMPEMLADL-----------------GLSRSDIGLL 63 (434)
T ss_pred CCCCCCCHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhHH--HhhHHHHHhc-----------------CCCHHHHHHH
Confidence 33444555555555555555666666666677777766665 5568998888 9999999999
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCC
Q 009833 87 TSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR 166 (524)
Q Consensus 87 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 166 (524)
.+.+.+++.+++++.|+++||+|||+++.++.++.++++++++++++++.+++.|++.|++.|...+...+++.|++|++
T Consensus 64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~ 143 (434)
T PRK11663 64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT 143 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHH
Q 009833 167 IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRK 245 (524)
Q Consensus 167 ~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~ 245 (524)
+|++++++.+.+.++|.++++++. +.+.+.+|||+.|++.+++.++..+. .++++|+|++.......++.
T Consensus 144 ~rg~~~~~~~~~~~~g~~~~~~~~---~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------ 214 (434)
T PRK11663 144 ERGGWWAIWNTAHNVGGALIPLVV---GAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------ 214 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------
Confidence 999999999999999999999984 44445679999999988877655444 55678877532100000000
Q ss_pred HhCCCCchHHHHHHHHHHHHhhhhccchhhhccc-CchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhH
Q 009833 246 IRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR-RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLY 323 (524)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 323 (524)
++.+ +..++.++.+.+.++.++. ..+.+.++.+.+..+........+..|.|.+++ ++|++..+++.
T Consensus 215 ----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~ 283 (434)
T PRK11663 215 ----HDAL-------ELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANS 283 (434)
T ss_pred ----cccc-------ccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 0000 0000000011122222211 011122444445455445555667778888884 58999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccc--CchhHH-HHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhh
Q 009833 324 STVITGAVNVLSTLVSIYSVDKV--GRRMLL-LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAF 400 (524)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~--~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
..+...++..+++++.|+++||+ ++|+.. ........+....+.... .. ............ +.+
T Consensus 284 ~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~-g~~ 350 (434)
T PRK11663 284 AVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-----------FA-SYVMQAACFFTI-GFF 350 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-----------cc-cHHHHHHHHHHH-HHH
Confidence 99999999999999999999998 333332 222222221211111110 11 111111111111 111
Q ss_pred ccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HHHHHHhccc
Q 009833 401 AWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM-SCFVFFLLPE 475 (524)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 475 (524)
..+..........|.+|++.|+++.|+.+...++|..++|.+.|.+.+..++...+...+.+.+. +++.+...++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111122334578999999999999999999999999999999999998877666555555444 3333333333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=300.56 Aligned_cols=382 Identities=16% Similarity=0.161 Sum_probs=283.4
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhh
Q 009833 22 TPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFA 101 (524)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 101 (524)
.+++|....++.+..+.++++....+ ...|.+.+++ |+++.+.+++.+.+.++..+++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~~ 70 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAG--VAAPRMAQEF-----------------GLDVAQMGWAFSAGILGLLPGALLG 70 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888999999998888 5568999998 9999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHH
Q 009833 102 SYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI 181 (524)
Q Consensus 102 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 181 (524)
|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+
T Consensus 71 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (406)
T PRK11551 71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF 150 (406)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHH
Q 009833 182 GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260 (524)
Q Consensus 182 G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
|..+++.++. .+.+..+||+.|++.++..++..++ ..++||+|++...+++.++.
T Consensus 151 g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------- 206 (406)
T PRK11551 151 GGALASVIGV---LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------------- 206 (406)
T ss_pred HHHHHHHHHH---HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh---------------------
Confidence 9999999843 3445678999999988766665544 55689887543221110000
Q ss_pred HHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhh
Q 009833 261 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSI 340 (524)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (524)
+...+..++.+..++ .+...+..+......+....|.|.++++.|++..+.+.......++.+++.++.|
T Consensus 207 ---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 276 (406)
T PRK11551 207 ---------APVLRALFGEGRATA-TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIG 276 (406)
T ss_pred ---------hhhHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 000011111111111 1222223333334455667788999988999999999999999999999999999
Q ss_pred hhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchh
Q 009833 341 YSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET 420 (524)
Q Consensus 341 ~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 420 (524)
++.||++||+.+..+.+...++.+.+... . ..+...+...+.+. ...+..+....+..|.+|++.
T Consensus 277 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 277 ALMDRLRPRRVVLLIYAGILASLAALAAA------------P--SFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhc------------C--cHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhh
Confidence 99999999998877655554444333221 1 11112222222222 222233455567789999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHH
Q 009833 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 471 (524)
|+++.|+.+....++..++|.+.|.+.++.+ +...+...+.+.+.++++.+
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998755 33444444444444444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=300.99 Aligned_cols=394 Identities=15% Similarity=0.101 Sum_probs=276.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
.+|.+..+++++.+.+++|....+ ...|.+.+|+ |++..+.|++.+++.+++.+++++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~l~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~g~ 65 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIG--FAGLTMGKDL-----------------GLSATMFGLAATLFYAAYVICGIPSNI 65 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHH--HHHHhhHhhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456677777777788889988887 5558888888 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 183 (524)
++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccc---CCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHH
Q 009833 184 LFANLVNYGTSH---IKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLEL 259 (524)
Q Consensus 184 ~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
+++++++..... +.+..|||+.|++.++++++..++ ++++||+|+.... -..++.+...+..+......++.++
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~- 223 (412)
T TIGR02332 146 ALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPEG- 223 (412)
T ss_pred HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccccc-
Confidence 999999654432 123479999999998887766554 5668998842100 0011111111111101000000000
Q ss_pred HHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhc--CCCCcchhHHHHHHHHHHHHHHh
Q 009833 260 VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL--GFGGSASLYSTVITGAVNVLSTL 337 (524)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
...+.....+..+++++ ++ .++...+.+++.....+.+..|.|.+++++ |++..+++.......++.+++.+
T Consensus 224 -~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l 297 (412)
T TIGR02332 224 -AFAHAAMPQRSMLREIF-TP----AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMI 297 (412)
T ss_pred -ccccccccHHHHHHHhc-Ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHH
Confidence 00000000011223332 12 255666666666677788889999999874 66777888889999999999999
Q ss_pred hhhhhhcccCchhHH-HHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccC
Q 009833 338 VSIYSVDKVGRRMLL-LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF 416 (524)
Q Consensus 338 ~~g~l~d~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (524)
+.|+++||+++|+.. ....+...++. .+.... .. . ......+.....+.. ...+..+....|.+
T Consensus 298 ~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~-----------~~-~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 362 (412)
T TIGR02332 298 WWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT-----------DH-N-LIQLLGIIMASMGSF-SAMAIFWTTPDQSI 362 (412)
T ss_pred HHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc-----------CC-H-HHHHHHHHHHHHHhh-hhhhHHHhhccccc
Confidence 999999999977653 33322222222 111110 11 1 111111111111111 11233344446788
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHH
Q 009833 417 PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFS 459 (524)
Q Consensus 417 p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~ 459 (524)
|++.|+++.|+.+..+++|++++|.+.+.+.+..| |...+.++
T Consensus 363 ~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~ 406 (412)
T TIGR02332 363 SLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV 406 (412)
T ss_pred chHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence 99999999999999999999999999999999875 55444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=299.98 Aligned_cols=375 Identities=14% Similarity=0.120 Sum_probs=272.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhH
Q 009833 23 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS 102 (524)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 102 (524)
+.++...+.+.++.+.++++..... ..+|.+.+++ |+|+.+.+++.+++.+++.++++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~l~~~~~g 74 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIF--YIMYLIKADL-----------------GLTDMEGAFLATAAFIGRPFGGALFG 74 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777788888899988876 5568888898 99999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHH
Q 009833 103 YTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIG 182 (524)
Q Consensus 103 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG 182 (524)
+++||+|||+++.++.++.++++++++++++++.++++|+++|++.+..++....++.|++|+++|++++++...+..+|
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 154 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG 154 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHH
Q 009833 183 ILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 262 (524)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
.++++.+ ...+.+..+||+.|++..+..++...+....||++++...+.+. +++.++
T Consensus 155 ~~~~~~l---~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~~-------- 211 (426)
T PRK12307 155 NIIAAYF---MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHSQ-------- 211 (426)
T ss_pred HHHHHHH---HHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccccc--------
Confidence 9999988 44445567999999986554444333333456665432111000 000000
Q ss_pred HHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhh
Q 009833 263 SRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYS 342 (524)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (524)
...+..+.+++++++++..+....... ..+........+..+.|.++++.|+++...+...+...++.++++++.+++
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l 289 (426)
T PRK12307 212 -SAWSVFSLSMKGLFNRAQFPLTLCVFI-VLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLC 289 (426)
T ss_pred -cchhhhhHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001123456666555443332222 222223333445678888888889988888888899999999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhh
Q 009833 343 VDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRS 422 (524)
Q Consensus 343 ~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 422 (524)
.||++||+.+..+.+...+..+.+... ...... ..............+..+....++.|.+|++.|+
T Consensus 290 ~dr~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 356 (426)
T PRK12307 290 ADRIGLKKTFSIGLLMSFLFIFPLFRI------------PQDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG 356 (426)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHH------------ccccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence 999999998887766655544333221 111111 1111111111111222233345567999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 009833 423 AGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGI 454 (524)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 454 (524)
++.|+.+....+++.++|.+.+.+.+..++..
T Consensus 357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 357 LGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999999999999999888554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=293.64 Aligned_cols=393 Identities=15% Similarity=0.150 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchh-hhhhhhhhhhccccCCCCCCcccCCcchhHHHH-----HHHHHHHHHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPH-FLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFT-----SSLYLAGLTA 97 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~l~~~i~ 97 (524)
+++.......++.+.+++|...++.. .|. +.++++| +.++. .+++. ++.+++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~~g 80 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFP---------------QVSPA-MGTLAAFATFGVGFLFRPLG 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC---------------CCCcH-HHHHHHHHHHHHHHHHHhhH
Confidence 44556777778889999999998733 343 4445543 23443 45543 3556778899
Q ss_pred HHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcc
Q 009833 98 TFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169 (524)
Q Consensus 98 ~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 169 (524)
+++.|+++||+|||+++..+.+++++++++++++++++ .++++|+++|++.|+.++....++.|++|+++|+
T Consensus 81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 160 (438)
T PRK09952 81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA 160 (438)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999987 5888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccCC-----CCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHH
Q 009833 170 GLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLR 244 (524)
Q Consensus 170 ~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 244 (524)
+..+..+.+..+|.+++..+...+.... +.+|||++|++.+++.++...+....||+|++...+++.++
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------ 234 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------ 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------
Confidence 9999999999999999877644333221 35799999999888776655555668888865322111000
Q ss_pred HHhCCCCchHHHHHHHHHHHHhhhhccchh-hhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchh
Q 009833 245 KIRGTDKIEPEFLELVEASRIAKEVKHPFR-NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASL 322 (524)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 322 (524)
.+.+.+.. .++++++ .+.......++.....+....|.|.+++ ..|++.....
T Consensus 235 ----------------------~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 235 ----------------------AKKRIPVIEALLRHPG---AFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ----------------------ccccCCHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00011111 1223222 1222222233334445566677887774 4788776555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcc
Q 009833 323 YSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAW 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
......++..+++.++.|+++||++||+.+..+.++..++...+..... ........+...++...+.+.
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----------AQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHHHHHH
Confidence 5555667777888899999999999999887766554443332222110 111112222222222222221
Q ss_pred ccccccceeecccCCchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHHHHHHHhcccC
Q 009833 403 SWGPLGWLIPSETFPLETRSAGQSVTVCVNL-LFTFVIAQAFLSMLCHF--KFGIFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
..+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+++.+.. ++...+.+.+++.+.+.+..+..+++
T Consensus 360 -~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 360 -VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred -HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 123445677899999999999999766654 78899999999998854 25555555555555555555555553
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=305.42 Aligned_cols=403 Identities=12% Similarity=0.004 Sum_probs=275.7
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhh
Q 009833 22 TPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFA 101 (524)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 101 (524)
.+..+.+..+..++.+....+...++ ..+|.+.+++ |++..+.|++.+++.+++.+++++.
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~--~~~~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFK--AAQNDMISTY-----------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChh--hhhHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666677777777777888887 5679999999 9999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHH
Q 009833 102 SYTTRRLGRRLTMLIAGIFFIAGVAFNVA-----AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176 (524)
Q Consensus 102 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 176 (524)
|+++||+|||+++..+++++++++++.++ +++++.+++.|+++|++.+...+...+++.||+|+++|++++++..
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999988888887776665 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHH
Q 009833 177 LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE 255 (524)
Q Consensus 177 ~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (524)
.+.++|.++++++...........+||..|.+.+++.++..++ +++.+++|+..... +.++ .. . +. ...+
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~---~-~~-~~~~ 235 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IF---G-EP-ISEE 235 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cc---c-Cc-cchh
Confidence 9999999999988543322111126999999888887776655 44467766421110 0000 00 0 00 0000
Q ss_pred HHHHHHHHHHhhhhccch-hhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHH
Q 009833 256 FLELVEASRIAKEVKHPF-RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNV 333 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 333 (524)
. +..++.+......+ +..++++. ++...+..++..........|.|.+++ .+|++..+++.......++.+
T Consensus 236 ~---~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ 308 (467)
T PRK09556 236 D---KETESTDMTKWQIFVEYVLKNPV----IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGAL 308 (467)
T ss_pred h---hccccccCcHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 0 00000000000001 11344443 555666666655566678889998875 589999999999998999999
Q ss_pred HHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeec
Q 009833 334 LSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPS 413 (524)
Q Consensus 334 ~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
++.++.|+++||++||+.+........++...+... .........+..+..+.. ..+..........
T Consensus 309 ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~ 375 (467)
T PRK09556 309 VGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ------------HATSEYMYLASLFALGFL-VFGPQLLIGVAAV 375 (467)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH------------hcCcHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 999999999999999887665443333322221111 111111221222222211 1111111123446
Q ss_pred ccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHh------------hhchhhHHHHHHHHHHHHHHHHHh
Q 009833 414 ETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLC------------HFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
|.+|++.+|++.|+.+..+++ +++++|.+.|.+.| ..+|...+.+..++.+.+.+..++
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 66999999999999 456665555555555544444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=291.15 Aligned_cols=370 Identities=12% Similarity=0.077 Sum_probs=261.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHH
Q 009833 25 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYT 104 (524)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 104 (524)
+|.....+.++.+....+..... ..+|.+.+++ |+|+.+.|++.+.+.+++.++++++|++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~~g~l 67 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPV--GLLSDIAQSF-----------------HMQTAQVGLMLTIYAWVVALMSLPLMLL 67 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHH--cchHHHHhHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433433332 4568999998 9999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 009833 105 TRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGIL 184 (524)
Q Consensus 105 ~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ 184 (524)
+||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+
T Consensus 68 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ 147 (390)
T PRK03545 68 TSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMV 147 (390)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHH
Q 009833 185 FANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEAS 263 (524)
Q Consensus 185 ~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
++|+++.. +.+..|||+.|++.++++++..+. ..++||.|+. +.+
T Consensus 148 ig~~l~~~---l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~~-------------------------- 193 (390)
T PRK03545 148 LGLPLGRV---IGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HSG-------------------------- 193 (390)
T ss_pred HHhhHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Ccc--------------------------
Confidence 99999544 344579999999999887776555 3446664310 000
Q ss_pred HHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhh
Q 009833 264 RIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYS 342 (524)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (524)
...+.++.++++..+. ..+..+...........+.+.+++ ..|.+..+.+.......++.++++++.+++
T Consensus 194 -----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l 264 (390)
T PRK03545 194 -----SLKSLPLLFRRPALVS----LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRL 264 (390)
T ss_pred -----hHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001234455554222 222222222222333445555554 478999999999999999999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhh
Q 009833 343 VDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRS 422 (524)
Q Consensus 343 ~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 422 (524)
.||+++|+.. .+.....++...+... .. ..+.......+.+.+. ....+.....+.+..| +.|+
T Consensus 265 ~dr~~~~~~~-~~~~~~~~~~~~l~~~------------~~-~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~ 328 (390)
T PRK03545 265 GNRHPSGFLL-IAIALLLVCLLLLLPA------------AN-SEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATD 328 (390)
T ss_pred hhccchhHHH-HHHHHHHHHHHHHHHH------------hc-hHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHH
Confidence 9999987654 3333333333222211 11 1222222222222222 2222333344556666 5789
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 423 AGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
++.|+.+...++|..++|.+.|.+.++.++...+...+...+.+++....
T Consensus 329 ~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 329 VAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666665555554444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=298.50 Aligned_cols=401 Identities=15% Similarity=0.134 Sum_probs=274.1
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
.++++|.....+.++.+.++++....+ ..+|.+.+++ |++..+.+++.+.+.+++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~ 74 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLIT--LVLTEVQGEF-----------------GLTTVQAASLISAAFISRWFGGLL 74 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788888889988887 4558898988 999999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
.|+++||+|||++++.+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..
T Consensus 75 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (496)
T PRK03893 75 LGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS 154 (496)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHH
Q 009833 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260 (524)
Q Consensus 181 lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
+|..+++.++. .+.+.++||+.|++..+..++..+....+||++++...+++.++.++..+.....+..........
T Consensus 155 ~g~~~~~~~~~---~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (496)
T PRK03893 155 IGAVVAAQVYS---LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTL 231 (496)
T ss_pred HHHHHHHHHHH---HHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHH
Confidence 99999999944 445568999999886655554444455678876543322211111111111100000000000000
Q ss_pred HH-----HHHhhhhccchh-------------hh--cccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCc
Q 009833 261 EA-----SRIAKEVKHPFR-------------NL--LKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGS 319 (524)
Q Consensus 261 ~~-----~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 319 (524)
.. ..........+. .. ......++.........+...........+.|.+++ ++|++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 00 000000000000 00 001111111222222222222222235567888885 7899999
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhh
Q 009833 320 ASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISA 399 (524)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (524)
+.+.+.+...++.+++.++.|++.||++||+.+..+..+..+..+.+... .....+.... .......
T Consensus 312 ~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 378 (496)
T PRK03893 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI------------GGANVWVLGL-LLFFQQM 378 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc------------cccHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999998877655544443322211 1111111111 1111111
Q ss_pred hccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 009833 400 FAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFL 456 (524)
Q Consensus 400 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 456 (524)
.+.+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..++...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 222223344556679999999999999999999999999999999999998876444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=293.05 Aligned_cols=389 Identities=15% Similarity=0.117 Sum_probs=275.8
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
.++++|.....+.++.+.++++....+ ...|.+.+++ |++..+.+++.+.+.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~ 66 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVA--LVLAEVAGEF-----------------GLTTVDAASLISAALISRWFGALM 66 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCChhhHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999888 5558999998 999999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
.|+++||+|||+++.++.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 67 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 146 (405)
T TIGR00891 67 FGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA 146 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHH
Q 009833 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260 (524)
Q Consensus 181 lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
+|.++++.++.......+ .+||+.|++.+++.++..+....+||++++...+++.++..+..++..+.++..+.
T Consensus 147 ~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 220 (405)
T TIGR00891 147 VGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN----- 220 (405)
T ss_pred HHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh-----
Confidence 999999998554433221 24999999877776666655667898876543222221111111111111000000
Q ss_pred HHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhh
Q 009833 261 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVS 339 (524)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (524)
..++.....++ +..+.+..+....+..............+.|.++. +.|++..+.+.+.....++.+++.++.
T Consensus 221 ----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~ 294 (405)
T TIGR00891 221 ----IVMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVF 294 (405)
T ss_pred ----hhhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111 01111111222222222222223345556676664 589999999999999999999999999
Q ss_pred hhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch
Q 009833 340 IYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419 (524)
Q Consensus 340 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 419 (524)
+++.||++||+.+..+.....+........ .. ..+...+..++.. ....+..+....++.|.+|++
T Consensus 295 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 360 (405)
T TIGR00891 295 GFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GA-NVAVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTD 360 (405)
T ss_pred HHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CC-chHHHHHHHHHHH-HHHccchhhHHHHHhhhCCcc
Confidence 999999999998877665443322221111 11 1111222212222 222222344456678999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhh
Q 009833 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGI 454 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~ 454 (524)
.|+++.|+.+....++..++|.+.|.+.+..| +..
T Consensus 361 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 361 QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999888 543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=285.91 Aligned_cols=362 Identities=19% Similarity=0.244 Sum_probs=245.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHH-HHHH-----HHHHHHHHHh
Q 009833 27 VSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLF-TSSL-----YLAGLTATFF 100 (524)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~l~~~i~~~~ 100 (524)
.......++.+++.+|...++ ...|.+.+++ +.++.+.+.+ .+.. .++..+++++
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~--~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFG--FYATAIAKTF-----------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 357777788999999999998 6669999999 7777776544 3332 2333578999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLN 172 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 172 (524)
.|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999987 4688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-----CCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHh
Q 009833 173 ILFQLNVTIGILFANLVNYGTSHI-----KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIR 247 (524)
Q Consensus 173 ~~~~~~~~lG~~~~~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 247 (524)
++...+..+|..+++.++...... .+.+|||++|++..+...+........||++++...++
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------------- 222 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-------------
Confidence 999998888888888776654322 24579999999865543322222223444321110000
Q ss_pred CCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHH
Q 009833 248 GTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTV 326 (524)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 326 (524)
+.+.+..+++..++ ++......+..+......+....|.|.++++ .|++..+.++...
T Consensus 223 ------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~ 281 (434)
T PRK15075 223 ------------------RPSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTL 281 (434)
T ss_pred ------------------ccccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00000111111111 1222222333333445566778889998876 7999888888888
Q ss_pred HHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccc
Q 009833 327 ITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGP 406 (524)
Q Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (524)
...++.+++.++.|+++||++||+.+..+.....+.......... .............+...+++ ...+
T Consensus 282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g-~~~~ 350 (434)
T PRK15075 282 CVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV----------AAPSFARMLAVELWLSFLYG-SYNG 350 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----------cCCchHHHHHHHHHHHHHHH-HHHh
Confidence 888999999999999999999999877654443322111111110 00111111111111111111 1223
Q ss_pred ccceeecccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhhch
Q 009833 407 LGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~g~ 452 (524)
....+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+..++
T Consensus 351 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 351 AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 3345568999999999999997666554 588899999999998774
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=278.18 Aligned_cols=438 Identities=20% Similarity=0.232 Sum_probs=313.5
Q ss_pred ccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHH
Q 009833 20 KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATF 99 (524)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 99 (524)
...|++...+.++..+.+.++||...++.+ .|.+...| . +.+.+. -+.++...+.+..+..+|.++||+
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lV--t~il~~lY-~-------~~~~~~-g~~ps~i~~~Vn~~A~vGti~GQl 102 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLV--TKILGYLY-Y-------HGDESG-GHYPSGVLALVNAAALVGTIFGQL 102 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHH--HHHHHHHh-c-------CCCCCC-CcCCchHHHHHHHHHHHHHHHHHH
Confidence 347888899999999999999999999843 35444444 1 122222 467788889999999999999999
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhH
Q 009833 100 FASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-------NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLN 172 (524)
Q Consensus 100 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 172 (524)
++|++.||+|||+++...+++..+++++++++. -.+++...|++.|+|.|+-+|...+..+|...+++||...
T Consensus 103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i 182 (538)
T KOG0252|consen 103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI 182 (538)
T ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence 999999999999999999999999999888752 2568888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC----C--------CcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCC-hhHH
Q 009833 173 ILFQLNVTIGILFANLVNYGTSHIK----S--------QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGR-FEEG 239 (524)
Q Consensus 173 ~~~~~~~~lG~~~~~~~~~~~~~~~----~--------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~-~~~~ 239 (524)
+...+..++|.+.|.+++..+.... + ..-||..+.+.++++++++...+.+|||+++.....+ .+.+
T Consensus 183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQA 262 (538)
T ss_pred EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhh
Confidence 8887777777777766654332221 1 1349999999999999999999999999988643332 2222
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhhhccc---hhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCC
Q 009833 240 KAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP---FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGF 316 (524)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 316 (524)
. ++..+....+.+.++ ........++.+ +...+..+ .-+.++..+..++..-..++..+.+...++++.|+
T Consensus 263 ~---~d~~k~~~~~~~~~~--~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~ 336 (538)
T KOG0252|consen 263 A---GDMKKVLSVDIEAES--TAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGV 336 (538)
T ss_pred h---hccccccccccchhh--ccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhcc
Confidence 2 111111111111000 001111111222 22222222 12346677888888888888888899999998888
Q ss_pred CCcchhH--------HH-HHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHH
Q 009833 317 GGSASLY--------ST-VITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 387 (524)
Q Consensus 317 ~~~~~~~--------~~-~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (524)
.+..... .. .+.....++|..+...++|++|||+..+.++.++.+..+.++..... .....
T Consensus 337 ~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~----------~~~~~ 406 (538)
T KOG0252|consen 337 IPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ----------LENTI 406 (538)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc----------ccccC
Confidence 7655443 11 22223334466677789999999999999999988888777654311 11122
Q ss_pred HHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhchhhHHHHHHHH
Q 009833 388 LVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC-----HFKFGIFLFFSGWV 462 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~g~~~~~~~~~~~ 462 (524)
..+++..+...+...+.......+.+|.+|++.|++..|+....+-+|++++...+.++.+ ..+....++....+
T Consensus 407 Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~ 486 (538)
T KOG0252|consen 407 GFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGC 486 (538)
T ss_pred ceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHH
Confidence 2233333444445556666778888999999999999999999999999999999999999 55555555555555
Q ss_pred HHHHHHHHHhcccCCCCChHHh
Q 009833 463 LIMSCFVFFLLPETKNVPIEEM 484 (524)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (524)
.+..++..+++||+++++++|+
T Consensus 487 ~~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 487 MLLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred HHHhHheeEEeecccccCHHHh
Confidence 5666666677889999999887
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=279.04 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=237.9
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+|| |+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+...
T Consensus 12 ~~lp~i~~~~-----------------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 74 (368)
T TIGR00903 12 PVLSLVAEDI-----------------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL 74 (368)
T ss_pred hhHHHHHHHh-----------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 5668999999 99999999999999999999999999999999999987766555545443333
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
..++++.++++|+++|++.+. .+.....++|++|+++|++++++.+.+.++|.+++++++..+ .+++|||+.|++.
T Consensus 75 ~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l---~~~~gWr~~f~~~ 150 (368)
T TIGR00903 75 DPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI---YTAGGLQLLIIPI 150 (368)
T ss_pred HhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccchHHHHHHH
Confidence 347999999999999999986 556666779999999999999999999999999999995544 4468999999998
Q ss_pred HHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 210 GIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 210 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
++++++..++ ++++||+|++. ++.. +.+ +. ..+++++++++. ++.
T Consensus 151 ~~l~~~~~~~~~~~lp~~p~~~---~~~~---------------~~~--------~~----~~~~~~ll~~~~----~~~ 196 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALPFQA---AEGF---------------GFK--------DA----VKEFGALAGRKD----LWI 196 (368)
T ss_pred HHHHHHHHHHHHHHcCCCCCCC---CCCc---------------chH--------HH----HHHHHHHHcChh----HHH
Confidence 8887776555 56689988531 0000 000 00 012456776665 666
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch---hHHHH-HHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR---MLLLE-AGIQMFLSQT 364 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r---~~~~~-~~~~~~~~~~ 364 (524)
..+..++.....+.+..|.|.++++.|++.. .+.......+.+.++ .++++||..|| +.... .....++...
T Consensus 197 ~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~ 272 (368)
T TIGR00903 197 IGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL 272 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6677777777788889999999988888754 555555555544444 46777876543 32222 2222222222
Q ss_pred HHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 365 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 444 (524)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 444 (524)
.+.. .. .....+....+ ...+.....+..+.+.+|.+|++.|+++.|+.+..+++++.++|.+.+
T Consensus 273 ~~~~-------------~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 273 ALAF-------------EL-NRLALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM 337 (368)
T ss_pred HHHH-------------cc-ccHHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence 2211 11 11122222222 222222223445677789999999999999999999999999999998
Q ss_pred HHHhhhch-hhHHHHHHHHHHHHHH
Q 009833 445 SMLCHFKF-GIFLFFSGWVLIMSCF 468 (524)
Q Consensus 445 ~~~~~~g~-~~~~~~~~~~~~~~~~ 468 (524)
.+.. +. ..+..+++...+.++.
T Consensus 338 ~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 338 LFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred HHhc--CHHHHHHHHHHHHHHHHHH
Confidence 8874 42 3444444444444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=277.70 Aligned_cols=353 Identities=10% Similarity=0.050 Sum_probs=255.9
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.++++| |+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++
T Consensus 30 ~~lp~i~~~~-----------------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 30 PLLPQLRQAS-----------------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred hhHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 5679999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC-cchHHHHHh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGL 208 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~ 208 (524)
+++|++.++++|+++|++.+...+....++.+++| ++|+++++++.++..+|..+++.++..+ .++ .+||+.+.+
T Consensus 93 ~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l---~~~~~~w~~~~~~ 168 (393)
T PRK09705 93 LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL---VQHSETWYQTLAW 168 (393)
T ss_pred HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHH
Confidence 99999999999999999999999999999999997 7799999999999999999988884433 333 379998877
Q ss_pred hHHHHHHHHHHhhcc-cCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHH
Q 009833 209 AGIPAALLTVGSLLV-TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVI 287 (524)
Q Consensus 209 ~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
.++..++..+.++.. ++.|+ .+ +++ +...++.++++. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~-------~~----------------------------~~~-~~~~~~~l~~~~----~~ 208 (393)
T PRK09705 169 WALPAVVALFAWWWQSAREVA-------SS----------------------------HKT-TTTPVRVVFTPR----AW 208 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCc-------cc----------------------------cCC-CcCCcccccCHh----HH
Confidence 666554443333222 12110 00 000 011122223322 33
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 009833 288 AVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIA 367 (524)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 367 (524)
...+..+.....+.....|.|.+++++|.+..+++....+..++.++++++.+++.||++||+....+..+..++..++.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 209 TLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 33344444455566778889988888999999999999999999999999999999999999988877666655554433
Q ss_pred HHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccC-CchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009833 368 IILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAFLSM 446 (524)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 446 (524)
.. ...... ... .+.+.+.+.. .|.......+.. |++.+++..|+.+..+++++.++|.+.|++
T Consensus 289 ~~------------~~~~~~-~~~--~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l 352 (393)
T PRK09705 289 WL------------PLQLPV-LWA--MVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352 (393)
T ss_pred Hc------------cchHHH-HHH--HHHHHhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111 111 1222222222 233333334555 467899999999999999999999999999
Q ss_pred Hhhhc-hhhHHHHHHHHH-HHHHHHHHhcccCCCC
Q 009833 447 LCHFK-FGIFLFFSGWVL-IMSCFVFFLLPETKNV 479 (524)
Q Consensus 447 ~~~~g-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 479 (524)
.|..| +...+.+..++. +..++...+.||++++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99886 555444444433 3333445556666544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=255.90 Aligned_cols=420 Identities=18% Similarity=0.182 Sum_probs=306.6
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
..+.+|...+....+...+..-.-..+ ...|...+.+ +.+..|..++......|..+++..
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s--~i~~~l~~~w-----------------~~s~~q~~llt~~v~~gmllga~~ 132 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLS--LILPALDEVW-----------------GPSEGQAPLLTLSVFLGMLVGAMV 132 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHH--HHHHHHHhhh-----------------chhhhhhhHHHHHHHhhhhhhhhh
Confidence 345566666666555544443333333 2335666666 888999999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
||..+|++|||+.+.+.....++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. +.+.
T Consensus 133 w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~wa 210 (528)
T KOG0253|consen 133 WGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWA 210 (528)
T ss_pred hheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHH
Confidence 99999999999999999999999999999999999999999999999998 899999999999999999888777 9999
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchH------
Q 009833 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEP------ 254 (524)
Q Consensus 181 lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 254 (524)
+|.+....+++.... ++||||.....+.+..+.+...+++|||||++..++++++|.+.++++...|+.+-
T Consensus 211 ig~v~ea~law~vm~---~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~ 287 (528)
T KOG0253|consen 211 IGQVFEALLAWGVMS---NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLE 287 (528)
T ss_pred HHHHHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceee
Confidence 999999998665433 46999999999988888888889999999999999999999999999876653210
Q ss_pred -------HH--HHHHH-HHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcC---------
Q 009833 255 -------EF--LELVE-ASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG--------- 315 (524)
Q Consensus 255 -------~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------- 315 (524)
|. .+..+ +.+..++......+++....++..+... ..++..-..+++.......+++...
T Consensus 288 ~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw-~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~ 366 (528)
T KOG0253|consen 288 SSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLW-RIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFL 366 (528)
T ss_pred eehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHhccCccccchhcc
Confidence 00 00111 1111233345566777665555544443 3344333344444434333333211
Q ss_pred -----------CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhh
Q 009833 316 -----------FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 384 (524)
Q Consensus 316 -----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (524)
.+...-..-..+..+..+.|.++.+++.||+|||+.+..+.+++.++.+.+... ...
T Consensus 367 p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c------------~~r 434 (528)
T KOG0253|consen 367 PTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC------------KTR 434 (528)
T ss_pred hhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh------------cCc
Confidence 112223344567788999999999999999999999998888877777665543 222
Q ss_pred HHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 009833 385 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI 464 (524)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~ 464 (524)
+.. .+..+..-.+...+ ..+.+.|..|++|+..|+++.|.....+.+|+++.|.+. ...+..-+.+.+++.+++++
T Consensus 435 n~~--tvllf~arafisg~-fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~il 510 (528)
T KOG0253|consen 435 NAY--TVLLFTARAFISGA-FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFIL 510 (528)
T ss_pred chh--HHHHHHHHHHHhch-heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHH
Confidence 222 22222222222222 246789999999999999999999999999999999988 44444456677778888888
Q ss_pred HHHHHHHhcccCCCCCh
Q 009833 465 MSCFVFFLLPETKNVPI 481 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (524)
.++...++-.|+++|.+
T Consensus 511 agIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 511 AGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHheeeeeccCCCCC
Confidence 77777777778988764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=284.07 Aligned_cols=371 Identities=16% Similarity=0.091 Sum_probs=245.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 152 (524)
|++..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999999999888763 78889999999999999998
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHHH-HHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGIL-FANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSL 230 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~ 230 (524)
+.....+.|++|+++|++++++++.+.++|.. .+++++..... ..+||+.|++.+++.++..++ .+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 88888999999999999999999999999874 45544222211 248999999988877775544 56688887532
Q ss_pred HhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhh-----hcccCchhHHHHHHHHHHHHHhhhHHHHHH
Q 009833 231 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRN-----LLKRRNRPQLVIAVALQIFQQCTGINAIMF 305 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (524)
..+ +.++.+ ++ .+ ++. +.+++++.+.++ .++++. ++...+..++.....+....
T Consensus 216 ~~~-~~~~~~---~~---~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~ 274 (452)
T PRK11273 216 GLP-PIEEYK---ND---YP---DDY-------NEKHEQELTAKQIFMQYVLPNKL----LWYIAIANVFVYLLRYGILD 274 (452)
T ss_pred CCC-Chhhhh---hc---cc---ccc-------ccccCCCccHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHH
Confidence 111 111100 00 00 000 000000111122 333333 55455555444455566778
Q ss_pred hHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc--CchhHHHH-HHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 306 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLE-AGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 306 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
|.|.++++ .|++..+++.......++.+++.++.|+++||+ +||+...+ ...+..++.+.+...
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~------------ 342 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN------------ 342 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh------------
Confidence 99998876 789888888888888899999999999999998 44443222 111112222111110
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhchhhHHHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFV-IAQAFLSMLCHFKFGIFLFFSG 460 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~g~~~~~~~~~ 460 (524)
.....+.........+... .+.......++.|.+|++.||++.|+.+...++++.+ +|.+.|.+.|..++...+...+
T Consensus 343 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~ 421 (452)
T PRK11273 343 PAGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 421 (452)
T ss_pred cccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence 1111111111111111111 1111122334568999999999999999998888765 7999999999988776665555
Q ss_pred HHHHHHHHHHHhcccCCCCChHHh
Q 009833 461 WVLIMSCFVFFLLPETKNVPIEEM 484 (524)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~ 484 (524)
...+.+++......+.++|++||.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 422 GGSILAVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred HHHHHHHHHHHHHhccccchHHHH
Confidence 445555555444444444554444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=281.54 Aligned_cols=349 Identities=15% Similarity=0.109 Sum_probs=255.2
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+++ |+|..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++
T Consensus 24 ~~~~~~~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 24 LLAPPLGRYF-----------------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred hHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence 4458999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
++++++.++++|++.|++.+..++.....+.|++| ++|++++++...+.++|..+++++ ...+.+..+||+.|++.
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 87 IADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL---ITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHH---HHHHHhcccHHHHHHHH
Confidence 99999999999999999999988888888999987 569999999999999998876665 33334457899999999
Q ss_pred HHHHHHHHHHh-hcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 210 GIPAALLTVGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 210 ~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
+++.++..+.. ++++++|+.. .++ +++. ++++...++.++++. ++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~--------------~~~~~~~~~~~~~~~----~~~ 209 (377)
T TIGR00890 163 GIIFLLVIVLGAFLIGYPPGQL-IKT--------------NIEV--------------SVKDYTVWEMLRTPQ----FWV 209 (377)
T ss_pred HHHHHHHHHHHHHheecCchhc-ccc--------------Cccc--------------chhhhhHHHHHcCcc----HHH
Confidence 98887776664 4455543210 000 0000 000112234445544 222
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 368 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 368 (524)
..+..+...........+.+.+.++.|.+..+.+.......++.++++++.+++.||++||+.+..+.....++.+.+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF 289 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333333333333444556666778888888888899999999999999999999999999988877776666555443
Q ss_pred HHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009833 369 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 448 (524)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 448 (524)
. ...................+.. .+....+..|.+|+++|+++.|+.+....++..++|.+.+.+.+
T Consensus 290 ~------------~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 290 I------------PMLNDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred c------------ccchhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1111111112222222222222 23334566799999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHH
Q 009833 449 HFKFGIFLFFSGWVLIM 465 (524)
Q Consensus 449 ~~g~~~~~~~~~~~~~~ 465 (524)
..|+...+.+.+++.+.
T Consensus 357 ~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 357 EIGFEYTFIVTGAFALT 373 (377)
T ss_pred hhchhhHHHHHHHHHHH
Confidence 88877666655544443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=287.43 Aligned_cols=386 Identities=12% Similarity=0.006 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
+.|..+..++++.++..+|.++.+ +++|.+.+++ |.+..+.+|+.+.|.++..++.+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~--~a~p~i~~~l-----------------~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLH--VAAPTLSMTL-----------------GASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999998 7789999999 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccC-CCCCcchhHHHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIG 182 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG 182 (524)
++||+|||++++.+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888887766 6789999999999999999
Q ss_pred HHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHH------------HHHHhCC
Q 009833 183 ILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAV------------LRKIRGT 249 (524)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~------------~~~~~~~ 249 (524)
..+||.+ .+.+.++.+||+.|++...++++..++ .+++||+|+.. +++.+..... ++.....
T Consensus 144 ~~~gp~l---gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~ 218 (495)
T PRK14995 144 AAFGPLV---GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKG 218 (495)
T ss_pred HHHHHHH---HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcccc
Confidence 9999999 455556789999999988777766555 45577765311 1111111100 0100000
Q ss_pred CCchHHHHH--------HHHHHHHhhhhccch--hhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCC
Q 009833 250 DKIEPEFLE--------LVEASRIAKEVKHPF--RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGG 318 (524)
Q Consensus 250 ~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 318 (524)
......... ...-...+.+.+.+. .++++++. +....+..+...........+.|.+++. +|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~ 294 (495)
T PRK14995 219 FLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI----ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSP 294 (495)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 000000000 000000011111221 34555555 3334444444444455666788888765 89999
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHh
Q 009833 319 SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFIS 398 (524)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (524)
.+++....+..++..++.++.|++.||+++|+.+..+.++..++...+.... .....+.......+.+.
T Consensus 295 ~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~G~ 363 (495)
T PRK14995 295 LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD-----------FSTQQWQAWGLMALLGF 363 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777766666555443321 11111222223333333
Q ss_pred hhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 399 AFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
+.+....+ ....+.+..|++.++.+.++.+....+|+.+++.+.+.+.++
T Consensus 364 g~g~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 364 SAASALLA-STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHH-HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 333445778999999999999999999999999999988764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=271.32 Aligned_cols=362 Identities=16% Similarity=0.148 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
..|...+.+.++.+.......... ..+|++.+++ |+++++.|+..+.+.++..+++++.|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~ 77 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPV--SLLTPMAQDL-----------------GISEGVAGQSVTVTAFVAMFASLFITQ 77 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554444444444333332222 3468888888 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 183 (524)
++||+|||++++.+.++.++++++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.
T Consensus 78 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~ 157 (394)
T PRK10213 78 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL 157 (394)
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHh-hcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHH
Q 009833 184 LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 262 (524)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
+++|+++. .+.+.+|||+.|++.++++++..+.. ...||+|+. + +
T Consensus 158 ~ig~~l~~---~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~--~------------------------ 203 (394)
T PRK10213 158 VIAAPLGS---FLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P--S------------------------ 203 (394)
T ss_pred HHHHHHHH---HHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c--c------------------------
Confidence 99999954 44456799999999887776655443 346665410 0 0
Q ss_pred HHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHh-HHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhh
Q 009833 263 SRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY-APVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIY 341 (524)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (524)
+...+.++.++++. ++...+..+...........+ .|.+.+++|+++.+.+......+++.+++.++.++
T Consensus 204 -----~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~ 274 (394)
T PRK10213 204 -----HQKQNTFRLLQRPG----VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSF 274 (394)
T ss_pred -----cchhHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001223444433 333323333333333344444 47777788999999999999999999999999999
Q ss_pred hhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhh
Q 009833 342 SVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETR 421 (524)
Q Consensus 342 l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 421 (524)
+.||.+ |+.+..+.....+..+.+... .. ..+.......+.+.++... .+....++.+..| +.+
T Consensus 275 l~~r~~-~~~l~~~~~~~~~~~~~l~~~------------~~-~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~ 338 (394)
T PRK10213 275 ILKRSV-KLALAGAPLVLAVSALVLTLW------------GS-DKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQA 338 (394)
T ss_pred HHhccc-hhHHHHHHHHHHHHHHHHHHH------------hh-hHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccH
Confidence 999954 444333333323322222221 11 2222333333333333322 2333334556666 446
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009833 422 SAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 463 (524)
Q Consensus 422 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (524)
+...++.....+++..+++.+.|.+.|..|+...+..+++..
T Consensus 339 ~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 339 EKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 677777788888999999999999999888766666555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=278.74 Aligned_cols=385 Identities=19% Similarity=0.229 Sum_probs=272.3
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhh
Q 009833 22 TPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFA 101 (524)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 101 (524)
+++.|.....+.+..+..+++....+ ..+|.+.+++ |.+..+.+++.+.+.++..+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMG--FAAPAISAEW-----------------GLDPVQLGFLFSAGLIGMAFGALFF 72 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHhhcc-----------------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666777777777666 4568888888 9999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHH
Q 009833 102 SYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI 181 (524)
Q Consensus 102 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 181 (524)
|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+
T Consensus 73 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 152 (398)
T TIGR00895 73 GPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152 (398)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHH
Q 009833 182 GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260 (524)
Q Consensus 182 G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
|..+++.+ .+.+.+..+||+.|++.++..++..++ .+++||++++...+ +.++..+..++.......+.+. +..
T Consensus 153 g~~~~~~~---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 227 (398)
T TIGR00895 153 GAAVGGFL---AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALP 227 (398)
T ss_pred HHHHHHHH---HHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccc
Confidence 99999998 444555678999999887655554444 66689988765544 3333333333322111111000 000
Q ss_pred HHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhh
Q 009833 261 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSI 340 (524)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (524)
+.++..+..+...+.+++.+..+. .+...+..+...........+.|.+.++.|.+..+.+.......++.+++.++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 228 EQKATQGTKRSVFKALFQGKTARI-TVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred ccccccchhhHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011112223333333333 3333334444555566677788888888999999999999999999999999999
Q ss_pred hhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchh
Q 009833 341 YSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET 420 (524)
Q Consensus 341 ~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 420 (524)
++.||+++|+... ...+..+...++.... . .........++.+.+.+ ...+....+..|.+|++.
T Consensus 307 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 371 (398)
T TIGR00895 307 WLADRLGPRVTAL-LLLLGAVFAVLVGSTL-----------F--SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAI 371 (398)
T ss_pred HHHhhcchHHHHH-HHHHHHHHHHHHHHHh-----------h--CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHH
Confidence 9999999984433 3333333322222211 1 11122222222222222 223455677789999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009833 421 RSAGQSVTVCVNLLFTFVIAQAFLSM 446 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 446 (524)
|+++.|+.+....++..++|.+.|.+
T Consensus 372 ~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 372 RATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999999998865
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=281.46 Aligned_cols=370 Identities=14% Similarity=0.095 Sum_probs=246.5
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+++ |++.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++
T Consensus 40 ~~~~~i~~~~-----------------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 102 (455)
T TIGR00892 40 VFFKELQQIF-----------------QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILAS 102 (455)
T ss_pred hhHHHHHHHh-----------------CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHH
Confidence 4568888888 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHH-HHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHh
Q 009833 130 AAQNLAMLIV-GRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGL 208 (524)
Q Consensus 130 ~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~ 208 (524)
++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..+++++ .+.+.+.+|||+.|++
T Consensus 103 ~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l---~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 103 FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL---NQYLFESFGWRGSFLI 178 (455)
T ss_pred HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH---HHHHHHHhChHHHHHH
Confidence 9999998875 5799999999877788888899996 679999999999999999999998 4444456799999999
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 209 AGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 209 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
.+++.++..+..+++.+.++.. .+.+.++. +.....+..++. . ... ..++..+....+.++++. ++.
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~----~~~ 245 (455)
T TIGR00892 179 LGGLLLHCCVCGALMRPVGPSQ-RVSKSKSK----EGLPPDGSTKKL--S-KKS-TAEKINRFLDFSLFTHRG----FLV 245 (455)
T ss_pred HHHHHHHHHHHHHHhCCCCccc-cccccccc----ccCCCCCccccc--c-ccc-hhhhhhhhcchHHhcCch----HHH
Confidence 9988776655543332221100 00000000 000000000000 0 000 000000000113444444 444
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc--CchhHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMFLSQTVI 366 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~r~~~~~~~~~~~~~~~~~ 366 (524)
..+..+...........+.|.+.++.|++..+++...+..+++.++++++.+++.||. ++|+...........+...+
T Consensus 246 ~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l 325 (455)
T TIGR00892 246 YLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL 325 (455)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556677888888899999999999999999999999999999973 33433332222211111111
Q ss_pred HHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009833 367 AIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSM 446 (524)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 446 (524)
.... .. ..+...+...+.+.+.+ ...+....++.|.+|++.++++.|+.+....++.+++|.+.|.+
T Consensus 326 l~~~-----------~~-~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 326 LCAL-----------AG-DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHH-----------hc-hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 1111 11 22222333333333332 22344556667889999999999999999999999999999999
Q ss_pred Hhhhc-hhhHHHHHHHHHHHH
Q 009833 447 LCHFK-FGIFLFFSGWVLIMS 466 (524)
Q Consensus 447 ~~~~g-~~~~~~~~~~~~~~~ 466 (524)
.+..+ +...+.+.+...+.+
T Consensus 393 ~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 393 VDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred ehhcCCcchHHHHhhHHHHHH
Confidence 98774 654444444433333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=285.05 Aligned_cols=417 Identities=12% Similarity=0.082 Sum_probs=275.4
Q ss_pred ccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhh-----hhccccCCCCCCcccCCcchhHHHHHHHHHHH
Q 009833 20 KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPV-----VYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG 94 (524)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~ 94 (524)
...+.+|.+..++.++......|....+ .+.|.+.++-..+ ..+...+...+++++++..+.|++.+.+.+++
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~ 89 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLS--LTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQ 89 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhhe--EEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHH
Confidence 3455667777777777777777877776 4446665521000 00000111123367999999999999999999
Q ss_pred HHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhH
Q 009833 95 LTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLN 172 (524)
Q Consensus 95 ~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 172 (524)
.+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus 90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999887554 56888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCC-cchHHHHHhhHHHHHHHHHHhhc-ccCChHHHHhcCChhHHHHHHHHHhCCC
Q 009833 173 ILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLL-VTDTPNSLIERGRFEEGKAVLRKIRGTD 250 (524)
Q Consensus 173 ~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 250 (524)
++...+..+|.+++++++. .+.+. .+||+.|++.++++++..+++++ .+|+|+..... +.++ ++..++.
T Consensus 170 ~~~~~~~~~g~~i~~~l~~---~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~~~i~~~---- 240 (465)
T TIGR00894 170 GMSTSGFQLGTFIFLPISG---WLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFE-KKYINSS---- 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHH-HHHHHhh----
Confidence 9999999999999999944 44445 38999999999988877766444 56666421100 0111 0000000
Q ss_pred CchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 009833 251 KIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITG 329 (524)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 329 (524)
.+.++.+.+.+.+++++++++. ++...+..+......+.+..|+|.++++ +|++..+.++..+...
T Consensus 241 ---------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~ 307 (465)
T TIGR00894 241 ---------LQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPY 307 (465)
T ss_pred ---------cccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHH
Confidence 0000000112334666666554 6666677777777778888899988854 8999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCchhHHH---HHHHHHHHHH---HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc
Q 009833 330 AVNVLSTLVSIYSVDKVGRRMLLL---EAGIQMFLSQ---TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 330 ~~~~~~~~~~g~l~d~~~~r~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
++..++.++.|+++||+++|+... ...+...++. ....+... . ........+..+.+...+.+..
T Consensus 308 ~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~ 378 (465)
T TIGR00894 308 LFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP--Y-------LSAAFYLTIIILTLANAVSSGP 378 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--H-------cCCchHHHHHHHHHHHHHhhhh
Confidence 999999999999999876442210 0001111111 11111100 0 0111122222222222222211
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--c-hhhHHHHHHHHHHHHHHHHH
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--K-FGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~~ 471 (524)
.+.......|..|. .+|.+.++.+..+.+++.++|.+.|.+.+.. + +...+.+.+...+.+.+...
T Consensus 379 -~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 379 -LAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred -hhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 22233344466554 7999999999999999999999999887753 2 44444444444444444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=269.25 Aligned_cols=360 Identities=13% Similarity=0.086 Sum_probs=252.2
Q ss_pred HHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHH
Q 009833 33 ATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRL 112 (524)
Q Consensus 33 ~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 112 (524)
.++.+..+....... ..+|.+.+++ |++..+.|++.+.+.+++.++++++|+++||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~--~~l~~~~~~~-----------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~ 69 (382)
T PRK10091 9 ALGTFGLGMAEFGIM--GVLTELAHDV-----------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH 69 (382)
T ss_pred HHHHHHHHhhHHHHH--hChHHHHHHc-----------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence 334455566665555 4568999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 113 TMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 113 ~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
++..+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..++++++.
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~- 148 (382)
T PRK10091 70 ILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT- 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH-
Confidence 9999999999999999999999999999999999999999988999999999999999999999999999999999844
Q ss_pred cccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhcc
Q 009833 193 TSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKH 271 (524)
Q Consensus 193 ~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
.+.+..+||+.|++.+++.++..+. .+++||.++ +.+. + . +.
T Consensus 149 --~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-~--------------~----------------~~ 191 (382)
T PRK10091 149 --YLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG-G--------------L----------------RE 191 (382)
T ss_pred --HHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc-C--------------H----------------HH
Confidence 4445578999999998877666554 455777531 0000 0 0 00
Q ss_pred chhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchh
Q 009833 272 PFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 350 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 350 (524)
.+ +.++++. .+......+...........+.+.++ +..|+++.+.+.......++.++++++.+++.||+++|+
T Consensus 192 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~ 266 (382)
T PRK10091 192 QF-HFLRSPA----PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR 266 (382)
T ss_pred HH-HHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence 01 1222222 22222222222222233333444444 458999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHH
Q 009833 351 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 430 (524)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (524)
.+..+..+..++.+.+... .+ ..+......+....+......+.......+..|.+.++.+ ..+.
T Consensus 267 ~~~~~~~~~~i~~~~~~~~------------~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (382)
T PRK10091 267 IAAVTDFIIVLALLMLFFF------------GG-MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQI 331 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH------------Hh-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHH
Confidence 8888777666665444322 11 1122222222222222212222222333444455555544 3467
Q ss_pred HHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHHHH
Q 009833 431 VNLLFTFVIAQAFLSMLCH-FKFGIFLFFSGWVLIMSCFV 469 (524)
Q Consensus 431 ~~~~~~~i~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 469 (524)
...+|..++|.+.|.+.|. .++...+...++..+..+..
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 7889999999999999996 45665555554444443333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=279.56 Aligned_cols=385 Identities=15% Similarity=0.167 Sum_probs=268.5
Q ss_pred hhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHH
Q 009833 39 FGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118 (524)
Q Consensus 39 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~ 118 (524)
..+|...++ ...|.+.+++ |++..+.+++.+++.++..++++++|+++||+|||+++..+.
T Consensus 6 ~~~~~~~~~--~~~~~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 66 (399)
T TIGR00893 6 NYLDRANLS--FAAPMLQEDL-----------------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFI 66 (399)
T ss_pred HHHHHHhhh--HhHHHHHHhh-----------------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHH
Confidence 344545554 4457888888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009833 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS 198 (524)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~ 198 (524)
++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.++. .+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~l~~ 143 (399)
T TIGR00893 67 VIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG---WILI 143 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999944 3444
Q ss_pred CcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhc
Q 009833 199 QWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLL 277 (524)
Q Consensus 199 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (524)
..+||+.|++.+++.++..++ .++.||+|+.... .+.++.....+....+ .+.++.++..+...++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 212 (399)
T TIGR00893 144 HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE----------QQGKGPSTPKKYQIKELL 212 (399)
T ss_pred hCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc----------cccccccCCCccchHHHh
Confidence 578999999988887776665 4446666531100 0111100000000000 000001111223344555
Q ss_pred ccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHH-H
Q 009833 278 KRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE-A 355 (524)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~-~ 355 (524)
+++. ++...+..+........+..+.|.+++ ..|.+..+.+.......++.+++.++.+++.||++||+.... .
T Consensus 213 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (399)
T TIGR00893 213 KDRR----VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA 288 (399)
T ss_pred cCHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 5443 455555556666666777788888775 478888889999999999999999999999999998862111 1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHH
Q 009833 356 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 435 (524)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 435 (524)
.....++.+.......... .....+.... .... .....+..+....+..|.+|++.|+++.|+.+....++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 359 (399)
T TIGR00893 289 RKTAIIAGLVLSLLMFATN-------YVNIPYAALA-LVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359 (399)
T ss_pred HHHHHHHHHHHHHHHHHhc-------cchhHHHHHH-HHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHh
Confidence 1111111111111110000 0111222222 2222 22222245677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHH
Q 009833 436 TFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFV 469 (524)
Q Consensus 436 ~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 469 (524)
..++|.+.+.+.+..+ +...+.+.+...+.+.+.
T Consensus 360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999887 665555554444444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=278.85 Aligned_cols=385 Identities=11% Similarity=0.038 Sum_probs=242.9
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh
Q 009833 28 SCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR 107 (524)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 107 (524)
.........+...++....+ ..+|.+.+++ |++..+.+++.+.+.+++.+++++.|+++||
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-----------------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr 97 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAA--PLLPIIRDNL-----------------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDL 97 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443333 4568888888 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 009833 108 LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFAN 187 (524)
Q Consensus 108 ~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~ 187 (524)
+|||+++..+.++++++.++++++++++.++++|+++|++.+... ....++.|++|+++|++++++.....++|..+++
T Consensus 98 ~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~ 176 (476)
T PLN00028 98 YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ 176 (476)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988654 4566889999999999999999877777777766
Q ss_pred HHHhhccc------CCCCcchHHHHHhhHHHHHHHHHHhhccc-CChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHH
Q 009833 188 LVNYGTSH------IKSQWGWRISLGLAGIPAALLTVGSLLVT-DTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260 (524)
Q Consensus 188 ~~~~~~~~------~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (524)
.+...... ..+..|||+.|++.+++.++..++.++++ +.|+ ++.++.+ ++.+.
T Consensus 177 ~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~~~~~-------- 236 (476)
T PLN00028 177 LLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------KSGTM-------- 236 (476)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------hcCcc--------
Confidence 55332211 11235899999999998887766655544 3331 0000000 00000
Q ss_pred HHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhh
Q 009833 261 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVS 339 (524)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (524)
++.+....+++.+++++ ++.+.+.++........+..+.|.++. ++|++..+++.+.+...++.++++++.
T Consensus 237 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~ 308 (476)
T PLN00028 237 ----PKDSFSKVLRYGVTNYR----TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAG 308 (476)
T ss_pred ----ccccHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000112333444444 343444444444444556667777764 579999999999999999999999999
Q ss_pred hhhhcccCchhH----HHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeeccc
Q 009833 340 IYSVDKVGRRML----LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSET 415 (524)
Q Consensus 340 g~l~d~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (524)
|+++||++||+. .....+...+..+.+.... ...........++++..+.... .+..+.+..+.
T Consensus 309 G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 376 (476)
T PLN00028 309 GYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-----------RANSLGAAIVVMILFSIFVQAA-CGATFGIVPFV 376 (476)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHHHHHh-hhhhcccCccc
Confidence 999999986521 1111111111111111111 0111111222222222221111 12234444565
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcc
Q 009833 416 FPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 416 ~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
. ++.+|++.|+.+..+.+|+.+++.+.+ ..+..+|...+.+.+++.+++.++.++.+
T Consensus 377 ~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 377 S-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred C-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 4 468999999998888888888877654 11223455555555555555555555554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=270.24 Aligned_cols=373 Identities=11% Similarity=0.062 Sum_probs=265.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHh
Q 009833 26 IVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105 (524)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 105 (524)
+.+...++++.+..+.+....+ ..+|++.+++ |+|.++.+++.+.+.+++.++++++|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~ 66 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTG--MVMGPIAEYF-----------------NLPVSSMSNTFTFLNAGILISIFLNAWLM 66 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778888877777 5569999998 99999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 009833 106 RRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185 (524)
Q Consensus 106 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 185 (524)
||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999988
Q ss_pred HHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 009833 186 ANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRI 265 (524)
Q Consensus 186 ~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
+|.+.... +.+..+||+.|.+.+++.++..++.++ .+.|+. ++++.
T Consensus 147 ~~~~~~~l--~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~----------------------------- 192 (394)
T PRK03699 147 FPIIAAYL--LARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP----------------------------- 192 (394)
T ss_pred HHHHHHHH--HhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc-----------------------------
Confidence 88874322 123468999999988877666554333 222210 00000
Q ss_pred hhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc
Q 009833 266 AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVD 344 (524)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (524)
++.+... +.. +++.++...+..++.......+..|.|.+++ ++|++..+.+...+...++..+++++.++++|
T Consensus 193 -~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 193 -KADKPVA----KEK-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred -cccCccc----ccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 011 1122444445555555556677889998885 57999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhh
Q 009833 345 KVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAG 424 (524)
Q Consensus 345 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (524)
|+++|+.+.....+..+...++... . +........+..+...+ ...+....+..|..|. .++..
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~-~~~~~ 330 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLFVNT------------D--DPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKV-ASPKL 330 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHc------------C--CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccC-CCHHH
Confidence 9999988876655544433332211 1 11111222222222222 2223333444565554 45677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhc
Q 009833 425 QSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLL 473 (524)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (524)
.+.......+|..++|.+.|.+.+..++...+....++.+.+.+.....
T Consensus 331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 8888888999999999999999998887655554444444443433333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=268.57 Aligned_cols=339 Identities=15% Similarity=0.090 Sum_probs=237.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--------QNLAMLIVGRILLGCGV 148 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~ 148 (524)
|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++++++.+++.++ .+++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999988887766553 25778999999999999
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChH
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPN 228 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 228 (524)
+...+...+++.|++|+++|++++++...+..+|.++|+.++.. +.+..|||+.+++.++..++..+.....|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVL---LYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP 203 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999998543 344578999988877665544433332333221
Q ss_pred HHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 009833 229 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAP 308 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
+ + ++ +.++++.+++. +... ...............+.+
T Consensus 204 ----~-~-~~-------------------------------~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~ 240 (399)
T PRK05122 204 ----V-K-GE-------------------------------RLPFRRVLGRV--WPYG----MGLALASIGFGTIATFIT 240 (399)
T ss_pred ----C-C-cc-------------------------------chhHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHH
Confidence 0 0 00 00111111110 0001 111111222344555667
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHH
Q 009833 309 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVL 388 (524)
Q Consensus 309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (524)
.+.++.|. ...+.......++.+++.++.+++.||+++|+.+..+..+..++...+... . +.+.
T Consensus 241 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~ 304 (399)
T PRK05122 241 LYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------P--SPWM 304 (399)
T ss_pred HHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------c--cHHH
Confidence 66666665 345566677788889999999999999999998887776666665544432 1 1222
Q ss_pred HHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 009833 389 VVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (524)
......+.+.+.+.. .+.......|..|++.|+++.|+.+....++..+++.+.|.+.+..++...+...+++.+.+++
T Consensus 305 ~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 305 ALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLA 383 (399)
T ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 222223333333222 2333344468889999999999999999999999999999999988877666666665555555
Q ss_pred HHHhcccCCC
Q 009833 469 VFFLLPETKN 478 (524)
Q Consensus 469 ~~~~~~~~~~ 478 (524)
.....+++++
T Consensus 384 ~~~~~~~~~~ 393 (399)
T PRK05122 384 LTWLLYRRAP 393 (399)
T ss_pred HHHHhccccc
Confidence 5555554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=269.71 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=271.1
Q ss_pred ccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHH
Q 009833 20 KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATF 99 (524)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 99 (524)
+.+++.++..+.+.+..+...++...+. +.+|.+.+++ |+|..+.++..+.+.+++.++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~ 66 (406)
T PRK15402 6 RLGRQALLFPLCLVLFEFATYIANDMIQ--PGMLAVVEDF-----------------NAGAEWVPTSMTAYLAGGMFLQW 66 (406)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhHh--cchHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777766 4568899998 99999999999999999999999
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHH
Q 009833 100 FASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179 (524)
Q Consensus 100 ~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 179 (524)
+.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++.....
T Consensus 67 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 146 (406)
T PRK15402 67 LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVA 146 (406)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999998888
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHH
Q 009833 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLE 258 (524)
Q Consensus 180 ~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
.+|..++|.++.. +.+..+||+.|++.++..++..+. .+..||+++.. ++ + ...
T Consensus 147 ~~~~~~g~~i~~~---l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~----------------~~~-- 201 (406)
T PRK15402 147 LLAPLLGPLVGAA---LIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-K----------------LSL-- 201 (406)
T ss_pred HHHHHHHHHHHHH---HHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-c----------------ccH--
Confidence 8999999998443 344568999999988887776654 34567764210 00 0 000
Q ss_pred HHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHh
Q 009833 259 LVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTL 337 (524)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
++...++++.++++. ++...+..+...........+.|.++ +.+|+++.+.+.......++.+++.+
T Consensus 202 --------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~ 269 (406)
T PRK15402 202 --------KELGRDYKLVLKNRR----FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNL 269 (406)
T ss_pred --------HHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001112344555554 33333333333333334445567665 45888888888887777888899999
Q ss_pred hhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCC
Q 009833 338 VSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417 (524)
Q Consensus 338 ~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 417 (524)
+.+++.||+++|+.+..+.+...++...+...... .....++......+.+.+.+... +...... ...+
T Consensus 270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~-~~~~ 338 (406)
T PRK15402 270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI---------SSHAYLWLTAGLSLYAFGIGLAN-AGLYRLT-LFSS 338 (406)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc---------ccccHHHHHHHHHHHHHHHHHHh-hhHHHHH-hhhc
Confidence 99999999999998888777666666555443210 11122222223333333332222 2222222 2234
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 009833 418 LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMS 466 (524)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (524)
++.+|+..++.+....++..+++.+.+.+.+..+........+++.+..
T Consensus 339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999988877554444444444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=261.26 Aligned_cols=345 Identities=15% Similarity=0.076 Sum_probs=243.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-----QNLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 151 (524)
|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++++++ ++++.+++.|++.|++ +..
T Consensus 66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~ 144 (462)
T PRK15034 66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GAN 144 (462)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHh
Confidence 9999999999999999999999999999999999999999999999999999987 8999999999999998 779
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcc---------c------CCCCcchHHHHHhhHHHHHHH
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS---------H------IKSQWGWRISLGLAGIPAALL 216 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~---------~------~~~~~~wr~~f~~~~~~~~~~ 216 (524)
++.....+++|+|+++||+++|+.....++|..+++++..... . ..+..+||...++..++.++.
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~ 224 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIA 224 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997666666665544432111 0 012456999888888877777
Q ss_pred HHHhhc-ccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHH
Q 009833 217 TVGSLL-VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQ 295 (524)
Q Consensus 217 ~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (524)
.++.++ +++.|. ++.......+.+|+++ .|.+.+.+++
T Consensus 225 ~i~~~~~~~~~~~-------------------------------------~~~~~~~~~~vlk~~~----~Wllslly~~ 263 (462)
T PRK15034 225 TIAAWSGMNDIAS-------------------------------------SRASIADQLPVLQRLH----LWLLSLLYLA 263 (462)
T ss_pred HHHHHHhCCCccc-------------------------------------cccCHHHHHHHhCCCc----hhHHHHHHHH
Confidence 666444 444321 0000112344566666 6777777788
Q ss_pred HhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009833 296 QCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVK 375 (524)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (524)
.+..+..+..++|++.++ .++.........+..+...+.++++|+++||+|+++++.++.+.+.++...+..... ..
T Consensus 264 tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~ 340 (462)
T PRK15034 264 TFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GT 340 (462)
T ss_pred HHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cc
Confidence 888888888899988866 333333333344556788889999999999999999999888777766644333321 00
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc---------------------hhhhhhhHHHHHHHHH
Q 009833 376 DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL---------------------ETRSAGQSVTVCVNLL 434 (524)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~~~~~~~~~~ 434 (524)
.....+.....+.......+.+..+ .+-++.+.+|+ ++-|.+.|+....+.+
T Consensus 341 ------~~~~~~~~~~~~~~l~~~~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 341 ------GSGNFIAFYAVFMGLFLTAGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred ------cccHHHHHHHHHHHHHHHhcccchH-HHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 0112222222222222333333222 23344566664 1467889999999999
Q ss_pred HHHHHHHHHHHHHhhhc-hh-hHHHHHHHHHHHHHHHHHhc
Q 009833 435 FTFVIAQAFLSMLCHFK-FG-IFLFFSGWVLIMSCFVFFLL 473 (524)
Q Consensus 435 ~~~i~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~ 473 (524)
|+++.|.+++...+..| +. .++.+.+...++.++.+..+
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988876 33 34444445555555555544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=260.16 Aligned_cols=358 Identities=13% Similarity=0.144 Sum_probs=252.0
Q ss_pred HHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhh
Q 009833 31 MAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 110 (524)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 110 (524)
.+.++.+..+.+.+..+ +.+|.+.+++ |.|..+.|++.+.+.++..++++++|+++||+||
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~lp~~~~~~-----------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLN--TLVPLWLAQE-----------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHHhhhhHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33455666777777776 5568999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009833 111 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN 190 (524)
Q Consensus 111 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~ 190 (524)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+.+.+..++++|++++++...+.++|..+|+.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999994
Q ss_pred hhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhh
Q 009833 191 YGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEV 269 (524)
Q Consensus 191 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.. +.+...|+..+. .+........+ ....++++. + +++
T Consensus 151 ~~---l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~ 189 (381)
T PRK03633 151 SK---VSTELMSVLPWV-TGLVLAAILPLLFTRILNQQA------E-------------------------------NHD 189 (381)
T ss_pred hc---ccccccchHHHH-HHHHHHHHHHHHHhcccCCCC------C-------------------------------CCC
Confidence 43 333222222222 22221111111 111222110 0 000
Q ss_pred ccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch
Q 009833 270 KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 349 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 349 (524)
+.+.++.++++..+. .....+...........+.|.+.++.|.+....+.......++.+++++..+++.||+++|
T Consensus 190 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 190 STSIWPMLKLRQARL----GVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CCCHHHHHHhcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 112334444444221 1111222222334455678888888899888888888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHH
Q 009833 350 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV 429 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 429 (524)
+.+..+.....++.+.+.. .. .... ...+.+.. .....|.....+.|..|++.++...+..+
T Consensus 266 ~~l~~~~~~~~~~~~~~~~-------------~~-~~~~---~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 327 (381)
T PRK03633 266 LVLRVQVFVVILGSIAMLS-------------QA-AMAP---ALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALL 327 (381)
T ss_pred HHHHHHHHHHHHHHHHHhh-------------hH-HHHH---HHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9888776666555443321 11 1111 11111111 11234555566678888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 430 CVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
...++|..++|.+.|.+.|+.++...+.+.+.+.+...+..
T Consensus 328 ~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 328 LSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999887666555555554444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=269.30 Aligned_cols=386 Identities=18% Similarity=0.154 Sum_probs=275.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.++...+..
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~ 193 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF 193 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCCh
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRF 236 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 236 (524)
.++.|++++++|+.++.+ ......+..++++++.+... +||+.+++..++.++.++.+++.||+|||+..+++.
T Consensus 194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~ 267 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRI 267 (521)
T ss_pred hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCch
Confidence 999999999999999999 55555555555555322222 699999999999998888877778999999999999
Q ss_pred hHHHHHHHHHhCCC----CchHHHHHHHHHH-HH--hhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 009833 237 EEGKAVLRKIRGTD----KIEPEFLELVEAS-RI--AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 309 (524)
Q Consensus 237 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
+++.+.+++....+ ..++......... .. ..+++..+.++++.++.++..+...+.++.....+++.. .
T Consensus 268 ~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~----~ 343 (521)
T KOG0255|consen 268 DEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS----L 343 (521)
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh----h
Confidence 99999999886543 1111111111111 11 112335577777776544444444444432222222222 1
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHH
Q 009833 310 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLV 389 (524)
Q Consensus 310 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (524)
.....|. .........+.....+....+...|+.|||.....+.....++++...+... ....+..
T Consensus 344 ~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 409 (521)
T KOG0255|consen 344 NVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD-----------DLGGWLH 409 (521)
T ss_pred hhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc-----------cchhHHH
Confidence 2222332 2344455555577778888889999999999999999988888888877642 1110111
Q ss_pred HHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Q 009833 390 VIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 469 (524)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (524)
.....+...+.+.++. +.+.+.+|++|+..|..+.+.......++++++|.+...............+.....+.+.+.
T Consensus 410 ~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (521)
T KOG0255|consen 410 WILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLS 488 (521)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 2222222222222222 336777899999999999999999999999999988754444222222222455666666666
Q ss_pred HHhcccCCCCChHHhHHH
Q 009833 470 FFLLPETKNVPIEEMTER 487 (524)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~ 487 (524)
.+++||++++.+.+..++
T Consensus 489 ~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 489 LLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HhcCcccCCCCCchhHHH
Confidence 688999999988665333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=269.61 Aligned_cols=379 Identities=16% Similarity=0.180 Sum_probs=265.3
Q ss_pred HHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhH
Q 009833 32 AATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR 111 (524)
Q Consensus 32 ~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 111 (524)
++++.+...++....+ ..+|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+|||
T Consensus 15 ~~~~~~~~~~~~~~~~--~~~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 75 (471)
T PRK10504 15 VAFGFFMQSLDTTIVN--TALPSMAQSL-----------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR 75 (471)
T ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHh-----------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3445566677777666 4568999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009833 112 LTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 191 (524)
Q Consensus 112 ~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~ 191 (524)
++++.+.++.+++.+++.++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~- 154 (471)
T PRK10504 76 NIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG- 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred hcccCCCCcchHHHHHhhHHHHHHHHHHh-hcccCChHHHHhcCChhHHHHHHH-------H--HhCCCC---chHHHHH
Q 009833 192 GTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTPNSLIERGRFEEGKAVLR-------K--IRGTDK---IEPEFLE 258 (524)
Q Consensus 192 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~-------~--~~~~~~---~~~~~~~ 258 (524)
+.+.++.+||+.|++......+..++. ...|+.+. .+.+.+....... . ..+.+. .......
T Consensus 155 --g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 --GLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred --HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 444456789999999887766665553 33454431 1112221111000 0 011110 0000000
Q ss_pred H-----------HHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHH
Q 009833 259 L-----------VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTV 326 (524)
Q Consensus 259 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 326 (524)
. ..+++..+++..+. ++++++. +....+..++..........+.|++++. .|.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSL-KLFRTRT----FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 00001111111122 3555555 3333333334444455566778888875 8999999999988
Q ss_pred HHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccc
Q 009833 327 ITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGP 406 (524)
Q Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (524)
...++..++.++.+++.||+++|+.+..+..+..+...++.... ...+.+.......+.+.+.+... +
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~-~ 372 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-----------LLGWYYLLPFVLFLQGMVNSTRF-S 372 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc-----------ccccHHHHHHHHHHHHHHHHHHH-H
Confidence 88888888889999999999999998888776666655544321 11111111112222222222222 2
Q ss_pred ccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 009833 407 LGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 452 (524)
....+..+..|++.++.+.++.++...+|..+++.+.+.+.+..++
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334556788999999999999999999999999999999887665
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=273.01 Aligned_cols=384 Identities=17% Similarity=0.179 Sum_probs=273.5
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh
Q 009833 28 SCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR 107 (524)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 107 (524)
+...++++.+...+|....+ ..+|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVN--VAIPTIAGDL-----------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhc-----------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555667788888888887 5679999998 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 009833 108 LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFAN 187 (524)
Q Consensus 108 ~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~ 187 (524)
+|||++++.+.+++++++++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHH--------HH-HH-hCC-CC-chH
Q 009833 188 LVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAV--------LR-KI-RGT-DK-IEP 254 (524)
Q Consensus 188 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~--------~~-~~-~~~-~~-~~~ 254 (524)
.+ .+.+.++++||+.|++.++++++..++ .+++||+++. .+++.+..... .. .. .++ .+ .+.
T Consensus 144 ~~---~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (485)
T TIGR00711 144 TL---GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDS 218 (485)
T ss_pred cc---HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence 99 555566789999999988877766655 4456665431 11111111100 00 00 111 11 000
Q ss_pred -HHHHH----------HHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchh
Q 009833 255 -EFLEL----------VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASL 322 (524)
Q Consensus 255 -~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 322 (524)
+.... ....+..++++....+.++++. ++...+..+......+....+.|.++++ .|+++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 219 NEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRN----FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00000 0000111111111224555555 3333344444444455666788888865 799999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcc
Q 009833 323 YSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAW 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
....+..++.+++.++.|++.||++||+.+..+..+..++...+..... .....+.......+.+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~g~~~ 364 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----------PDTPFLAIALPQFIRGFGMGC 364 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777766666555442110 111111122222223333332
Q ss_pred ccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 403 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
...+.. ....+..|++.++++.|+.+....+|+.+++.+.+.+.++.
T Consensus 365 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 365 FFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333 33357789999999999999999999999999999888754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=261.91 Aligned_cols=343 Identities=14% Similarity=0.116 Sum_probs=248.0
Q ss_pred hhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHH
Q 009833 39 FGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAG 118 (524)
Q Consensus 39 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~ 118 (524)
......... ..+|.+.+++ |.++.+.+++.+.+.++..++++++|+++||+|||+++..+.
T Consensus 17 ~~~~~~~~~--~~~p~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 77 (385)
T TIGR00710 17 GPLGIDMYL--PAFPEIAADL-----------------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL 77 (385)
T ss_pred HHHHHHHhc--ccHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 344445554 4568899998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009833 119 IFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS 198 (524)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~ 198 (524)
++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.++. .+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~---~l~~ 154 (385)
T TIGR00710 78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG---YILV 154 (385)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999854 3444
Q ss_pred CcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhc
Q 009833 199 QWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLL 277 (524)
Q Consensus 199 ~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (524)
..+||+.|++.++..++..+. .++.||+++. ++.++ . ++....+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~-------------~~~~~~~~~~~ 203 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLPY----EARIQ--------------I-------------STYFETFLLLL 203 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----cccCC--------------H-------------HHHHHHHHHHH
Confidence 578999999988877766555 4456765421 00000 0 00011233445
Q ss_pred ccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHH
Q 009833 278 KRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAG 356 (524)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~ 356 (524)
+++. ++...+..............+.|.+++ ++|.++.+.+.......++.+++.++.+++.||+++|+.+..+.
T Consensus 204 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 279 (385)
T TIGR00710 204 KSKM----FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGL 279 (385)
T ss_pred cCch----hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5554 222333333333344555666777665 68999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHH
Q 009833 357 IQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT 436 (524)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 436 (524)
....++...+...... ...............+.+.+. ..+.......|..| +.++++.++.+.....++
T Consensus 280 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g 348 (385)
T TIGR00710 280 ILFAVSAVLLEITAIL---------GLGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLG 348 (385)
T ss_pred HHHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHH
Confidence 6666665554432210 001111222222222222222 22344445567766 568999999998888777
Q ss_pred HHHHHHHHHHHhh
Q 009833 437 FVIAQAFLSMLCH 449 (524)
Q Consensus 437 ~i~~~~~~~~~~~ 449 (524)
.+.+.+.+...+.
T Consensus 349 ~i~~~~~~~~~~~ 361 (385)
T TIGR00710 349 AIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHHhcccc
Confidence 7777777744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=257.83 Aligned_cols=332 Identities=11% Similarity=0.073 Sum_probs=230.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA--------AQNLAMLIVGRILLGCGV 148 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~ 148 (524)
|+|..++|++.+++.+++.++++++|+++||+|||++++.+.+...++.+.... .++++.++++|+++|++.
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887776543321 368899999999999999
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChH
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPN 228 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 228 (524)
+...+...+++.|++|+++|++++++.+.+..+|.+++|+++.. +.+.+|||+.+.+..+..++........||.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~---l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL---LHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA 203 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH---HHhccChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999544 334578998877665544433332222333221
Q ss_pred HHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 009833 229 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAP 308 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
. + + .+.+.++..+...... +. .+...........+.|
T Consensus 204 ~---~----~------------------------------~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~~~~~~~ 240 (392)
T PRK12382 204 H---A----G------------------------------ERPSLWSVVGLIWKPG-LG-----LALQGVGFAVIGTFVS 240 (392)
T ss_pred C---c----c------------------------------cCchHHHHHHHHHHhH-HH-----HHHHHHHHhHHHHHHH
Confidence 0 0 0 0000111111000000 11 1111222344556677
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHH
Q 009833 309 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVL 388 (524)
Q Consensus 309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (524)
.++++.+++ ..+.......++.+++++..|++.||+++|+.+..+..+..++...+... . ..+.
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~ 304 (392)
T PRK12382 241 LYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------P--TAWV 304 (392)
T ss_pred HHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------c--cHHH
Confidence 777776664 34556666777888999999999999999998887777666665544321 1 1122
Q ss_pred HHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 009833 389 VVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (524)
......+.+.+.+.. .+.......|.+|++.|+++.|+.+....++..++|.+.+.+.++.++...+.+.+.+.+.+++
T Consensus 305 ~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 305 ALAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 222223333332222 2333444568889999999999999999999999999999999998887766666655555554
Q ss_pred HHH
Q 009833 469 VFF 471 (524)
Q Consensus 469 ~~~ 471 (524)
..+
T Consensus 384 ~~~ 386 (392)
T PRK12382 384 VTI 386 (392)
T ss_pred HHH
Confidence 443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=270.86 Aligned_cols=366 Identities=14% Similarity=0.038 Sum_probs=263.8
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+++ +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+
T Consensus 38 ~~~~~~~~~~-----------------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 38 VAVPVQIQMM-----------------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHH-----------------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 3457888887 78999999999999999999999999999999999999988888877766554
Q ss_pred h-----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHH
Q 009833 130 A-----AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRI 204 (524)
Q Consensus 130 ~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~ 204 (524)
. .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..+|+.++..+ .+..+|++
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l---~~~~~~~~ 177 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL---IAAGGVAW 177 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH---HHHHhhHH
Confidence 2 567899999999999999988899999999999999999999999999999999999995443 33468999
Q ss_pred HHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhH
Q 009833 205 SLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQ 284 (524)
Q Consensus 205 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (524)
.|++.++..++..++.+.+|++++.. .+.+ +.. ++.+..++..++++..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~ 228 (417)
T PRK10489 178 NYGLAAAGTFITLLPLLRLPALPPPP---QPRE----------------HPL----------RSLLAGFRFLLASPVVGG 228 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC---cccc----------------cch----------HHHHHHHHHHHcChHHHH
Confidence 99988887777666666777754210 0000 000 000112333444443222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHH
Q 009833 285 LVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 363 (524)
.++ ..+.... ......+.|.+.++ .|.++...+.+.....++.+++.++.+++.||.++++.+..+..+..++.
T Consensus 229 ~~~----~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 229 IAL----LGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV 303 (417)
T ss_pred HHH----HHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH
Confidence 221 1111111 23456677888877 89999999999999999999999999999999777777776666555554
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 443 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 443 (524)
+.+... + ..+...+..++++.+.+ ...+....+..|..|++.||++.|+.+....++..+++.+.
T Consensus 304 ~~~~~~------------~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 304 GLFGLM------------P--MWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHcc------------c--hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 433321 1 12222222222222222 12234456667899999999999999999999999999999
Q ss_pred HHHHhhhchh-hHHHHHHHHHHHHHHHHHhcccCCCCChHHh
Q 009833 444 LSMLCHFKFG-IFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 484 (524)
Q Consensus 444 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (524)
|.+.+..++. .+...+++..+.+++.....+++++++++|.
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999988865 4444555555666667777788777766655
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=262.90 Aligned_cols=348 Identities=13% Similarity=0.045 Sum_probs=254.6
Q ss_pred hhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHH
Q 009833 37 LMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI 116 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~ 116 (524)
+...+...... ..+|.+..++ +.+..+.+++.+++.++..++++++|+++||+|||++++.
T Consensus 9 ~~~~~~~~~~~--~~~~~~~~~~-----------------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~ 69 (365)
T TIGR00900 9 LISLIGTAITQ--VALPLYVLAG-----------------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIG 69 (365)
T ss_pred HHHHHHHHHHH--HHHHHHHHHh-----------------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHH
Confidence 33344444444 4457788887 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009833 117 AGIFFIAGVAFNVAAQ-----NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 191 (524)
Q Consensus 117 ~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~ 191 (524)
+.++..++.++..+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 70 ADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888 99999999999999999999999999999999999999999999999999999999954
Q ss_pred hcccCCCCcchHHHHHhhHHHHHHHHHHhhcc--cCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhh
Q 009833 192 GTSHIKSQWGWRISLGLAGIPAALLTVGSLLV--TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEV 269 (524)
Q Consensus 192 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
. +.+..+||+.|++.++..++..+..+++ ||+++. +.++ .++ +..++.
T Consensus 150 ~---l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------~~~---------~~~~~~ 199 (365)
T TIGR00900 150 L---MYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-----EIQA-------------LSN---------AVLRDT 199 (365)
T ss_pred H---HHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-----cccc-------------cch---------hHHHHH
Confidence 4 4445789999998887766655543333 332210 0000 000 000111
Q ss_pred ccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHH-HhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccC
Q 009833 270 KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM-FYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG 347 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 347 (524)
+..+++.++++.. +...+..+.......... .+.|.+.++ +|.+..+.+.......++.+++.++.+++.||.+
T Consensus 200 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (365)
T TIGR00900 200 REGIKFVLKNPLL----RTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFK 275 (365)
T ss_pred HhHHHHHHcCcHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2234455555553 222333332233333333 677888875 8999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH
Q 009833 348 RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 427 (524)
Q Consensus 348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 427 (524)
||+.+..+.....++...+... .. +.+...+..++.+.+.+. ..+....+..|..|++.|+++.|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~ 341 (365)
T TIGR00900 276 RMALMTGAIFVIGLAILVVGLT------------PP-NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGA 341 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh------------ch-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9998887665555555444332 11 122223333333333322 234556667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 428 TVCVNLLFTFVIAQAFLSMLCHFK 451 (524)
Q Consensus 428 ~~~~~~~~~~i~~~~~~~~~~~~g 451 (524)
.+....++..+++.+.|.+.|..|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=270.72 Aligned_cols=369 Identities=16% Similarity=0.108 Sum_probs=254.8
Q ss_pred hhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHH
Q 009833 37 LMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI 116 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~ 116 (524)
+...++...++ ..+|.+.+++ |++..+.|++.+++.++..+++++.|+++||+|||+++..
T Consensus 5 ~~~~~~~~~~~--~~~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 65 (379)
T TIGR00881 5 AAYYLVRKNFA--LAMPYLVEEI-----------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI 65 (379)
T ss_pred hHHHHhHHhhh--hhhHHHHHHh-----------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence 44455565655 5568898888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHH-HHhhccc
Q 009833 117 AGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANL-VNYGTSH 195 (524)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~-~~~~~~~ 195 (524)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++. ++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--- 142 (379)
T TIGR00881 66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFG--- 142 (379)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 5332
Q ss_pred CCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchh
Q 009833 196 IKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR 274 (524)
Q Consensus 196 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (524)
+.+..+||+.|++.+++.++..++ .++.+|+|+....+.+.++ ...+.+..+ ++.++..+..+...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~ 210 (379)
T TIGR00881 143 IAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM-----------PNEEPDGDA-EKKEEELTKKQIFLQ 210 (379)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC-----------ccccccccc-ccccccccchHHHHH
Confidence 334568999999988877665554 5557776532111000000 000000000 000000011112233
Q ss_pred hhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccC-chhHH
Q 009833 275 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG-RRMLL 352 (524)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~r~~~ 352 (524)
++++++. ++...+..+........+..+.|.+++ ..|+++.+.+.......++.+++.++.+++.||.. +|+..
T Consensus 211 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 286 (379)
T TIGR00881 211 YVLLNKV----LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP 286 (379)
T ss_pred HHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchH
Confidence 4445544 444455555555555667778888775 47999999999999999999999999999999864 33322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHH
Q 009833 353 LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN 432 (524)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (524)
. ...........+...... ...............+ ....+..+....+..|.+|++.|+++.|+.+...
T Consensus 287 ~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 355 (379)
T TIGR00881 287 L-AVFFMALIIVSLLVYWLN---------PAANPLMDLICLFALG-FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFA 355 (379)
T ss_pred H-HHHHHHHHHHHHHHHhcC---------cchhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 2 111111111111111100 1111122222222222 2222222334456689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhh
Q 009833 433 LLFTFVIAQAFLSMLCHFKFGI 454 (524)
Q Consensus 433 ~~~~~i~~~~~~~~~~~~g~~~ 454 (524)
.+++.++|.+.|.+.+..|+..
T Consensus 356 ~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 356 YLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred hhhhhhhhhhHHHHHHhhcccc
Confidence 9999999999999999887653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=267.09 Aligned_cols=372 Identities=15% Similarity=0.067 Sum_probs=244.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----QNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999999998887764 467888899999999999999
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLI 231 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~ 231 (524)
+.....+.|++|+++|++++++.+.+.++|..+++.+.... .....+||+.|++.++++++..+. .+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG--MAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 98999999999999999999999999999999988773322 112358999999988887776554 566788775321
Q ss_pred hcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccc-hhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 009833 232 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP-FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 310 (524)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (524)
.+ +.++. +.+...+ ..++ .+.+.+.+.. .+..++++. ++...+..++.....+.+..|.|.+
T Consensus 215 ~~-~~~~~-------~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 215 LP-PIEEY-------RNDYPDD-YNEK----AEQELTAKEIFMQYVLPNKL----LWYIAIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred CC-Cchhc-------ccccccc-cccc----cccccchHHHHHHHHccCch----HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00 00000 0000000 0000 0000000011 112344444 4444444444444556677889988
Q ss_pred HHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHH
Q 009833 311 FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLV 389 (524)
Q Consensus 311 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (524)
+++ .|+++.+++....+..+.++++.++.|++.||+++++....+.....+.......... . .....+..
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~ 348 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM---N------PAGNPLVD 348 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh---c------CCCchHHH
Confidence 876 7999999999999999999999999999999996443222222222111111111110 0 11111111
Q ss_pred HHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhchhhHHHH-HHHHHHHHH
Q 009833 390 VIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFT-FVIAQAFLSMLCHFKFGIFLFF-SGWVLIMSC 467 (524)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 467 (524)
.......+... .+..........|.+|++.|+++.|+.+..+++++ .++|.+.|.+.|+.|+...+.. +++..+..+
T Consensus 349 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 427 (438)
T TIGR00712 349 MICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 427 (438)
T ss_pred HHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111111 11111112345689999999999999999888875 6799999999998887655444 444444444
Q ss_pred HHHHhcccCC
Q 009833 468 FVFFLLPETK 477 (524)
Q Consensus 468 ~~~~~~~~~~ 477 (524)
...+..+|.|
T Consensus 428 ~~~~~~~~~~ 437 (438)
T TIGR00712 428 LLIVVMIGEK 437 (438)
T ss_pred HHHHHHhhcc
Confidence 5555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=254.74 Aligned_cols=370 Identities=15% Similarity=0.190 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
..+..++++++...+...|...+.. .++..++.| |++++..|++.+.+.+.+.++++++|+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iag--v~~~v~~~f-----------------ni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAG--VLKEVQTYF-----------------NISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhh--hhHHHHHhc-----------------CCCchhccchhHHHHHHHHHHHHHHHH
Confidence 3456677777788888899888774 457887777 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 183 (524)
++|||+||+++.+|..+|.++.++++++..||+++++|.+.|+|.+.+.|+++++++|.+|.++|++++++++.+.++|.
T Consensus 91 LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 91 LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHH
Q 009833 184 LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEA 262 (524)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
.+|.+.+.....+.. .|||.|++.+++++++.++ .++.+|++|- ..++. .+.++
T Consensus 171 glG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~~----------- 225 (493)
T KOG1330|consen 171 GLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGENK----------- 225 (493)
T ss_pred ceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCCc-----------
Confidence 999988544444432 2999999999999998888 4556665421 11110 00000
Q ss_pred HHHhhhhccchhh---hcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH----HhcCCCCcchhHHHHHHHHHHHHH
Q 009833 263 SRIAKEVKHPFRN---LLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF----KTLGFGGSASLYSTVITGAVNVLS 335 (524)
Q Consensus 263 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~ 335 (524)
..+.....++| +.+.+. +....+...........+..|.|.+. +-.|++.....++..+...++.+|
T Consensus 226 --~~~~~ts~~kDl~~l~~~~v----~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lG 299 (493)
T KOG1330|consen 226 --MVKPFTSVWKDLKVLAKIKV----FVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLG 299 (493)
T ss_pred --CCCCccchHHHHHHHHccCc----eeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhh
Confidence 00011112222 222232 22222333333333344555555444 336777778888888999999999
Q ss_pred HhhhhhhhcccCch----hHHHHHHHHHHHHHHHHHHHH-hhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccce
Q 009833 336 TLVSIYSVDKVGRR----MLLLEAGIQMFLSQTVIAIIL-GIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWL 410 (524)
Q Consensus 336 ~~~~g~l~d~~~~r----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
.+.+|.++||+.|+ ....+.-+..+.+......+. ..... .....+..++++++........+.+....
T Consensus 300 vl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~------~~~s~~~~~il~~~g~~~~~~~~a~n~~i 373 (493)
T KOG1330|consen 300 VLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF------TSSSMIFGLILFLVGETISWFNWATNNPI 373 (493)
T ss_pred heehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHhcccccccce
Confidence 99999999995321 122222222222111111110 00000 22223333333333333333344444444
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 009833 411 IPSETFPLETRSAGQSVTVCVNLLFTF-VIAQAFLSMLCHF 450 (524)
Q Consensus 411 ~~~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ 450 (524)
+ .|+.|++.|.++.++...+..+.+- .+|++.|.+.|+.
T Consensus 374 ~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 374 F-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred e-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 4 5999999999999998887665544 4555899888864
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=259.83 Aligned_cols=359 Identities=17% Similarity=0.229 Sum_probs=266.2
Q ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhh
Q 009833 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGF 150 (524)
Q Consensus 73 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 150 (524)
+.+++++..|.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 557899999999999999999999999999999999999999999999999999998875 456789999999999999
Q ss_pred hhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC-cchHHHHHhhHHHHHHHHHHhh-cccCChH
Q 009833 151 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSL-LVTDTPN 228 (524)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~ 228 (524)
.+|+...+.++|.|++||++..++..++..+|.+++.++++ .+.+. +||+++|++.++.+++..++++ +..|+|.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg---~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG---LLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999844 44444 8999999999999999988854 4667774
Q ss_pred HHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHH---hhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHH
Q 009833 229 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRI---AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 305 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (524)
. ++...+ +|.+..++.+.. +++.+.|++++++++. +|...+..++...+...+..
T Consensus 222 ~---h~~is~---------------~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 222 K---HPNISE---------------KELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred c---CCCCCH---------------HHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 2 111111 111111111111 1114678999999888 89999999999999999999
Q ss_pred hHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch---------hHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009833 306 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR---------MLLLEAGIQMFLSQTVIAIILGIKVK 375 (524)
Q Consensus 306 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (524)
|.|.|+++ +|++..+.|++.++..+...+..+++|.++||+.+| ..-.++....+++++.+.+.
T Consensus 280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------ 353 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------ 353 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec------
Confidence 99999976 999999999999999999999999999999998652 22223333333333333332
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccC-CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---hc
Q 009833 376 DHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH---FK 451 (524)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~g 451 (524)
.....+..+.++.+.....+..... .+.+..- .+++.+..+|+.+....+.++++|.+.+.+..+ ..
T Consensus 354 ------~~~~~~~a~~~l~~~~~~~g~~~~G---f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e 424 (466)
T KOG2532|consen 354 ------SDEHRLLAVILLTIAIGLSGFNISG---FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE 424 (466)
T ss_pred ------CCCcchHHHHHHHHHHHHcccchhh---hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH
Confidence 1111122222222222222222111 1112222 557789999999999999999999999999842 24
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 009833 452 FGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (524)
|...+.+.+...+.+.+.+.
T Consensus 425 W~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 425 WRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred HHHHHHHHHHHHHHhchhee
Confidence 55555554444444443333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=255.59 Aligned_cols=349 Identities=15% Similarity=0.084 Sum_probs=235.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH---h-hhhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---A-AQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|++..+.|++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. + .++++.+++.|+++|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 99999999999999999999999999999999999999999999999877653 3 3578889999999999999888
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHH-HHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGI-LFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSL 230 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~ 230 (524)
+....++.+++|+++|++++++.+.+.++|. ++++++ .+.+.+..||+..++.......+..++ .++.++.++.
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY---SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP- 199 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-
Confidence 8888889999999999999999999999997 578887 344445567665555443333332332 3334443210
Q ss_pred HhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 009833 231 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (524)
++.+. ++ +. ++.+..++++++++. ++...+..++.....+.+..+.|.+
T Consensus 200 -~~~~~------------~~----~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 200 -QHMQT------------RE----KF----------SELGKAATILFTNPN----VLLGGMVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -ccccC------------Cc----ch----------hhHHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 00 000112334555554 4444444555555667778899999
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHH-HHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHH
Q 009833 311 FKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLE-AGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLV 389 (524)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (524)
.+++|++..+.+.......++..++.+..|+++||++||+.... +.+...++...+...... ..+..+..
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---------~~~~~~~~ 319 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---------FGHSFAVA 319 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---------cCCcHHHH
Confidence 98899999888888888899999999999999999998876642 223333322222211100 01112222
Q ss_pred HHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Q 009833 390 VIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFV 469 (524)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (524)
.....+.+.+... ..+.. ....|.. ++.|+++.|+.+....+++.++|.+.+.+.+..|+...+.+.+.+.+.+.+.
T Consensus 320 ~~~~~~~G~~~~~-~~~~~-~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAG-YVPLA-AVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHH-HHHHH-HHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 2222222222221 22332 2335654 4689999999999999999999999999999988665555555444444444
Q ss_pred HHh
Q 009833 470 FFL 472 (524)
Q Consensus 470 ~~~ 472 (524)
..+
T Consensus 397 ~~~ 399 (402)
T TIGR00897 397 TAF 399 (402)
T ss_pred HHH
Confidence 333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=256.23 Aligned_cols=334 Identities=15% Similarity=0.138 Sum_probs=241.7
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
+.+|.+.+++ |.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.
T Consensus 27 p~~~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 27 PAFKAIQADL-----------------QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred hhHHHHHHHH-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 4457888888 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
++++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.++ +.+.+..+||+.|++.
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~---~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLG---AWLLNHFGWQAIFATL 166 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCChHHHHHHH
Confidence 9999999999999999999888888889999999999999999999888999999999984 4444567999999998
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHH
Q 009833 210 GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 289 (524)
Q Consensus 210 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (524)
+++.++..+..++++|+++. ++ + ++++.++++.++++..+. .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~----~~-~-----------------------------~~~~~~~~~~~~~~~~~~----~ 208 (401)
T PRK11043 167 FAITLLLILPTLRLKPSKKA----RK-Q-----------------------------SQDALTFKQLLKSKTYLG----N 208 (401)
T ss_pred HHHHHHHHHHHHHcCCCCCc----cc-c-----------------------------chHHHHHHHHHcChhHHH----H
Confidence 88887776665556654310 00 0 000112344454444222 1
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHH
Q 009833 290 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 369 (524)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 369 (524)
.+...........+..+.|.++++.|++..+.+.......++..++.+..+++.||+++|+..........++...+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 209 VLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222334455667888888889998888988888888889999999999999999887665555544444333222
Q ss_pred HhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 370 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
... .....+..+......+.+.+. ..+.......+..| +.++++.|+.+..+..++..++.+.+.+.+.
T Consensus 289 ~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 289 SLL---------SHPSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHh---------ccCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 110 111112222222222222222 22333344446555 5799999999999999999999999988775
Q ss_pred hch
Q 009833 450 FKF 452 (524)
Q Consensus 450 ~g~ 452 (524)
...
T Consensus 358 ~~~ 360 (401)
T PRK11043 358 PLL 360 (401)
T ss_pred Chh
Confidence 433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=256.81 Aligned_cols=364 Identities=14% Similarity=0.099 Sum_probs=246.6
Q ss_pred hhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcch-----hHHHHHHHHHHHHHHHHhhHHHhhhhh
Q 009833 35 GGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQG-----LQLFTSSLYLAGLTATFFASYTTRRLG 109 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~l~~~i~~~~~g~l~dr~G 109 (524)
+.+..+....... ..+|.+.+++ |++..+ .|++.+++.++..++++++|+++||+|
T Consensus 22 ~~~~~~~~~~~~~--~~l~~~~~~~-----------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 82 (408)
T PRK09874 22 GCFLTGAAFSLVM--PFLPLYVEQL-----------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG 82 (408)
T ss_pred HHHHHHHHHHHhh--hhHHHHHHHh-----------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence 3444455555554 4568888887 777654 489999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009833 110 RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV 189 (524)
Q Consensus 110 rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~ 189 (524)
||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+
T Consensus 83 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (408)
T PRK09874 83 RKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA 161 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865 567778889999999999999999999999999999999
Q ss_pred HhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Q 009833 190 NYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKE 268 (524)
Q Consensus 190 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
+. .+.+..+||+.|++.+++.++..+. .++++|+++.. + ++ +. .+.
T Consensus 162 ~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~----------------~~---~~~------ 208 (408)
T PRK09874 162 GG---LLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV----S-KK----------------EM---LHM------ 208 (408)
T ss_pred HH---HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc----c-ch----------------hh---hHH------
Confidence 44 3444578999999988877766555 44466543100 0 00 00 000
Q ss_pred hccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcc----hhHHHHHHHHHHHHHHhhhhhhhc
Q 009833 269 VKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSA----SLYSTVITGAVNVLSTLVSIYSVD 344 (524)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d 344 (524)
+ ...+.+++++. ........+...........+.+.+..+.+.+..+ .+.+....+++.+++.+..|++.|
T Consensus 209 -~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d 283 (408)
T PRK09874 209 -R-EVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGD 283 (408)
T ss_pred -H-HHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 01122233321 11111111222222233445556665553322222 344555667788888899999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhh
Q 009833 345 KVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAG 424 (524)
Q Consensus 345 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (524)
|++||+.+..+.....++.+..... . ..+...+...+.+.+.+ ...+....+..+..|++.+++.
T Consensus 284 r~g~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~ 348 (408)
T PRK09874 284 RIGPEKILITALIFSVLLLIPMSFV------------Q--TPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRI 348 (408)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHh------------c--cHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceee
Confidence 9999998887766555444433321 1 12222222222222222 2233344445677788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 009833 425 QSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (524)
.++.+....+|..++|.+.|.+.+..++...+...++..+.+.+..+
T Consensus 349 ~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 349 FSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred ehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887666666655555444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=253.85 Aligned_cols=368 Identities=11% Similarity=0.084 Sum_probs=250.1
Q ss_pred HHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh
Q 009833 29 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL 108 (524)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 108 (524)
+....+..+....+...+. ..+|.+.+++ +.+..+.++..+++.+++.++++++|+++||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~--p~l~~i~~~~-----------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 78 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQ--PGIINVVRDF-----------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRI 78 (413)
T ss_pred HHHHHHHHHHHHHHHHhhc--cCHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc
Confidence 3333444555666666665 6678999998 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 009833 109 GRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANL 188 (524)
Q Consensus 109 Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~ 188 (524)
|||++++.+.+++++++++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||+
T Consensus 79 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 79 GRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777778888999999999999999999999999999999
Q ss_pred HHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Q 009833 189 VNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAK 267 (524)
Q Consensus 189 ~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (524)
++... .+..|||+.|++.++..++..+. ++++||+++. +++.. +. +
T Consensus 159 lg~~l---~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~---------------~~------------~ 205 (413)
T PRK15403 159 SGAAL---MHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF---------------SA------------K 205 (413)
T ss_pred HHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC---------------Ch------------H
Confidence 96543 34578999999999887777665 4557886521 00000 00 0
Q ss_pred hhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc
Q 009833 268 EVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV 346 (524)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (524)
.....++++++++. ++...+...........+..+.|.++++ .|+++.+.++.......+.+++..+.+.+.++.
T Consensus 206 ~~~~~~~~ll~~~~----~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~ 281 (413)
T PRK15403 206 SVLRDFRNVFRNRL----FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP 281 (413)
T ss_pred HHHHHHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 00113445555554 4444444444455556666777877765 689999999988888888888888777766544
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhH
Q 009833 347 GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQS 426 (524)
Q Consensus 347 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 426 (524)
.+++.......+..++..++...... ..+..+......+++..+.+... |...... ..-....+|++.+
T Consensus 282 ~~~~~~~~~~~~~~ig~~l~~~~~~~---------~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a 350 (413)
T PRK15403 282 TEPRFIWRAVPIQLVGLALLIVGNLL---------WPHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSA 350 (413)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH---------ccccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHH
Confidence 44443332222223333222221100 01111112233333333333332 2222111 1112224799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009833 427 VTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 463 (524)
Q Consensus 427 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (524)
+.+.....+...++...+++.+......+....+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999998888999998888877644444444443333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=252.94 Aligned_cols=381 Identities=11% Similarity=0.090 Sum_probs=257.9
Q ss_pred ccccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHH
Q 009833 16 EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGL 95 (524)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~ 95 (524)
.++.+.++..+.......+..+..+++....+ ..+|.+++++ |+|+.+.|++.+.+.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~i~~~~-----------------~~s~~~~gl~~~~~~~g~~ 75 (438)
T PRK10133 15 DKDAGQSRSYIIPFALLCSLFFLWAVANNLND--ILLPQFQQAF-----------------TLTNFQAGLIQSAFYFGYF 75 (438)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHH
Confidence 34444444445555555566677888887776 5569999998 9999999999999999999
Q ss_pred HHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhH
Q 009833 96 TATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLN 172 (524)
Q Consensus 96 i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 172 (524)
+++++.|+++||+|||+++..+..+++++++++ .++++++.++++|+++|+|.|...+....++.|+.++++|.+.+
T Consensus 76 i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~ 155 (438)
T PRK10133 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence 999999999999999999999999999999875 46889999999999999999999999999999987777777789
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCC-------------C-C--------cchHHHHHhhH-HHHHHHHHH-hhcccCCh
Q 009833 173 ILFQLNVTIGILFANLVNYGTS-HIK-------------S-Q--------WGWRISLGLAG-IPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 173 ~~~~~~~~lG~~~~~~~~~~~~-~~~-------------~-~--------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~p 227 (524)
++.+..+.+|..+++.++.... ... + . .+||++|+... +..++..++ ...+||.+
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~ 235 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999998865332 110 0 0 25777776433 333333222 22345422
Q ss_pred HHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 009833 228 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
.. +.+ + +...+...+.+++++++..+. ..+..++..........|.
T Consensus 236 ~~---~~~-~--------------------------~~~~~~~~~~~~ll~~~~~~~----~~l~~~~~~~~~~~~~~~~ 281 (438)
T PRK10133 236 SD---NHS-D--------------------------AKQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYL 281 (438)
T ss_pred cc---ccc-c--------------------------ccccchhhhHHHHHhCchHHH----HHHHHHHHHHHHHHHHHHH
Confidence 10 000 0 000000122345566665332 2233333334444455566
Q ss_pred HHH-HH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhH
Q 009833 308 PVL-FK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 385 (524)
Q Consensus 308 ~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (524)
+.+ .+ .+|+++.+++.......++.++++++++++.||+++|+++..+..+..+.+++.... ...
T Consensus 282 ~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------~~~- 348 (438)
T PRK10133 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH- 348 (438)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CCh-
Confidence 655 34 479999999999999999999999999999999999998887766555444333221 111
Q ss_pred HHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHH
Q 009833 386 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLI 464 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~ 464 (524)
.....+.+.+.+.+.. .|.......|..|++ .+++.++.. ...+++.++|.+.|.+.+..| ....+++...+.+
T Consensus 349 --~~~~~~~l~glg~~~i-~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 349 --VGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred --HHHHHHHHHHHHHHHH-HHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1122222233333333 355556666776654 577777775 455788999999999999876 4444444444444
Q ss_pred HHH
Q 009833 465 MSC 467 (524)
Q Consensus 465 ~~~ 467 (524)
..+
T Consensus 424 ~~~ 426 (438)
T PRK10133 424 VIF 426 (438)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=255.85 Aligned_cols=365 Identities=19% Similarity=0.246 Sum_probs=248.9
Q ss_pred hhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHH-----HHHHHHHHHHhhHHHhhhhhhH
Q 009833 37 LMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSS-----LYLAGLTATFFASYTTRRLGRR 111 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~l~~~i~~~~~g~l~dr~Grr 111 (524)
+.+.+|...++. ..+.+.+++++ +.++.+.+.+.+. .+++..+++++.|+++||+|||
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r 65 (394)
T TIGR00883 3 AVEWFDFYLYGF--AAVLVFHTFFP---------------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRK 65 (394)
T ss_pred chhHHHHHHHHH--HHHHHHHHhcC---------------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhH
Confidence 345566666652 33566666521 3455666665543 3344457899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHH
Q 009833 112 LTMLIAGIFFIAGVAFNVAAQNLA--------MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGI 183 (524)
Q Consensus 112 ~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 183 (524)
+++..+.++..++.++++++++++ .+++.|+++|++.+...+....++.|++++++|+++.++.+.+..+|.
T Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 145 (394)
T TIGR00883 66 KTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGL 145 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHH
Confidence 999999999999999999998875 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccC-----CCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHH
Q 009833 184 LFANLVNYGTSHI-----KSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLE 258 (524)
Q Consensus 184 ~~~~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
++++.++...... .+.++||+.|++.+++.++..+.....||+|++..+++
T Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 201 (394)
T TIGR00883 146 LLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------ 201 (394)
T ss_pred HHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh------------------------
Confidence 9999876544321 13578999999888776666555556777663211100
Q ss_pred HHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHh
Q 009833 259 LVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTL 337 (524)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
++++.+.+.++.++++++ + ++......+...........+.|.+. ++.|.+..+.+.......++..++.+
T Consensus 202 ------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 273 (394)
T TIGR00883 202 ------KHKKKRGPIRETLTKHRK-P-FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP 273 (394)
T ss_pred ------ccccccCCHHHHHHhchH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 001112334444444321 1 33333344444445566677888887 55889988899989999999999999
Q ss_pred hhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCC
Q 009833 338 VSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP 417 (524)
Q Consensus 338 ~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 417 (524)
+.+++.||++||+.+.....+..+....+..... .....+......+....+.+. ..+....+..|.+|
T Consensus 274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p 342 (394)
T TIGR00883 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----------DSGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFP 342 (394)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh----------cCCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCC
Confidence 9999999999999776554444333221111110 111222222222222222222 23445667789999
Q ss_pred chhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHH
Q 009833 418 LETRSAGQSVTV-CVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGW 461 (524)
Q Consensus 418 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~ 461 (524)
++.|+++.++.+ ....++..++|.+.|.+.++.+ +...+....+
T Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 343 TEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred ccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 999999999854 4456788899999999999887 5544444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=259.26 Aligned_cols=344 Identities=21% Similarity=0.329 Sum_probs=248.7
Q ss_pred hhhhhhhhhhhhcccccch-hhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHH
Q 009833 35 GGLMFGYDVGVSGGVTAMP-HFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLT 113 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 113 (524)
+.+..+++..... ..+| .+.+++ |.+..+++++.+++.++..+++++.|+++||+|||++
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 64 (352)
T PF07690_consen 4 AFFLSGFGFSIIS--PALPLYLAEEL-----------------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV 64 (352)
T ss_dssp HHHHHHHHHHHHH--HHHH-HHHCCS-----------------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHcc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Confidence 3445555555555 3446 677777 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 009833 114 MLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193 (524)
Q Consensus 114 l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~ 193 (524)
+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+ .
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l---~ 141 (352)
T PF07690_consen 65 LIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL---G 141 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred EeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch---h
Confidence 9999999999977777778888999999999999999999999999999999999999999999999999999999 4
Q ss_pred ccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhcc-
Q 009833 194 SHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKH- 271 (524)
Q Consensus 194 ~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (524)
+.+.+..+||+.|++.+++.++..++ .++++++|+....+.+.++ + ++.+++..
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~----------------~--------~~~~~~~~~ 197 (352)
T PF07690_consen 142 GFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES----------------E--------SKKPKPLKP 197 (352)
T ss_dssp HHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT----------------T----------HHHCCCH
T ss_pred hhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc----------------c--------ccccccccc
Confidence 45556678999999999998888765 3445544321111000000 0 00011111
Q ss_pred chhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHhcCCC-CcchhHHHHHHHHHHHHHHhhhhhhhcccCch
Q 009833 272 PFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKTLGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRR 349 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 349 (524)
.++.+++++.. +...+..+...........+.|.+ .+.+|.+ ..+.+.......+...++.++.+++.||+++|
T Consensus 198 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (352)
T PF07690_consen 198 GFKSLFKNPVL----WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR 273 (352)
T ss_dssp -CTHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccccchh----hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 24445544442 223333333333455677888887 4668888 68888889999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHH
Q 009833 350 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV 429 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 429 (524)
+..........+....+.... ......+......+.+.+.+ ...+....+..|..|++.+|++.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~ 341 (352)
T PF07690_consen 274 RRLLIAILLLILGALGLLLLP-----------FSSSPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFN 341 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCSH-----------HHCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777766665555555444332 11122222223333333332 234566677789999999999999999
Q ss_pred HHHHHHHHHHH
Q 009833 430 CVNLLFTFVIA 440 (524)
Q Consensus 430 ~~~~~~~~i~~ 440 (524)
...++++.++|
T Consensus 342 ~~~~~~~~igP 352 (352)
T PF07690_consen 342 SIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHCC
Confidence 99999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=252.73 Aligned_cols=340 Identities=14% Similarity=0.168 Sum_probs=236.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTML-IAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.|..++|++.+.+.++..+.+++.|+++||+||||.++ .+.++..++.++++++++++.+++.|+++|.+.+...|..
T Consensus 29 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~ 108 (375)
T TIGR00899 29 RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQL 108 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHH
Confidence 999999999999999999999999999999999988755 4566667778888999999999999999999888888888
Q ss_pred hhhhhccCCCCCcchh--HHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHh
Q 009833 156 PLFLSEIAPTRIRGGL--NILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIE 232 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~--~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~ 232 (524)
.++..|+.|+++|++. .+....+.++|.+++++++. .+.+.++||+.|++.++..++..+. ++++||.|++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~---~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
T TIGR00899 109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF---WLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG 185 (375)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH---HHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence 8899999887777654 57888888999999999844 3445578999999998887766655 4558887632100
Q ss_pred cCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-
Q 009833 233 RGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF- 311 (524)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (524)
++ .+.+.++.++++..+..... .+...........+.|.++
T Consensus 186 ----~~------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 227 (375)
T TIGR00899 186 ----AL------------------------------TRLEVRGLLASRDTRLLFVA----CTLMWGCNILYIINMPLLII 227 (375)
T ss_pred ----cc------------------------------CcchhhhhhcCcchHHHHHH----HHHHHHHHHHHHhhhHHHHH
Confidence 00 00011223334432222221 1222222233445566665
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHH
Q 009833 312 KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVI 391 (524)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (524)
+++|.++.+.+.......+..+++.++.+++.||++||+.+..+.+...+....+.. . +..+....
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~ 293 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA-------------D-NSLWALLM 293 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHH
Confidence 558999888888877777778888899999999999999887765544433322221 1 12222222
Q ss_pred HHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 009833 392 MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (524)
...+.+.+.+. ..+....+..|..|++ ++++.++.+...+++..++|.+.|.+.+..++...+...+...+.+.+...
T Consensus 294 ~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 294 LQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 22222222222 2234455667887764 679999999999999999999999999988877666666666555555555
Q ss_pred hc
Q 009833 472 LL 473 (524)
Q Consensus 472 ~~ 473 (524)
++
T Consensus 372 ~~ 373 (375)
T TIGR00899 372 LI 373 (375)
T ss_pred ee
Confidence 44
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=238.53 Aligned_cols=375 Identities=17% Similarity=0.170 Sum_probs=277.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhH
Q 009833 23 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS 102 (524)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 102 (524)
++...+.......+|...+..+..+ +.+.+++ |+|+.|.+++.++..+...+..++.|
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~-----~~i~~~~-----------------~LS~~q~~ll~aiPil~GallRl~~g 70 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLG-----VFIKSDF-----------------GLSEGQKGLLVAIPILVGALLRLPYG 70 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----hhhcccc-----------------CCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444555555555544 5666777 99999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHH
Q 009833 103 YTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNL---AMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNV 179 (524)
Q Consensus 103 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~---~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 179 (524)
.+.||+|.|++..++.++..+-++..+++.++ +++++.+++.|++ |+.+.+...++++|+||+++|.++|+.. ..
T Consensus 71 ~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~G 148 (417)
T COG2223 71 FLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AG 148 (417)
T ss_pred hhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cc
Confidence 99999999999999999999999999998654 5999999999999 5588899999999999999999999998 77
Q ss_pred HHHHHHHHHHHhhcccCCCCcc---hHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHH
Q 009833 180 TIGILFANLVNYGTSHIKSQWG---WRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPE 255 (524)
Q Consensus 180 ~lG~~~~~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (524)
++|..+...++... ....+ ||....+..+..++..+. ++.+.|.|......
T Consensus 149 N~G~av~q~~~P~v---~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~---------------------- 203 (417)
T COG2223 149 NLGVAVAQLVAPLV---AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV---------------------- 203 (417)
T ss_pred cccHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc----------------------
Confidence 77777766663332 22345 999998888887776666 55577766320000
Q ss_pred HHHHHHHHHHhhhhc-cchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHH
Q 009833 256 FLELVEASRIAKEVK-HPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNV 333 (524)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 333 (524)
++.. ..++.++++++ .|.+++.++..+.++..+..++|.+++ ++|.+..+++.......+.+.
T Consensus 204 -----------~~~~~~~~~~v~~~~~----~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~ 268 (417)
T COG2223 204 -----------KPQLPAQLKAVFSNKD----TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGA 268 (417)
T ss_pred -----------cccchhHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 0001 23455566666 888888999999999999999998886 599999999999999999999
Q ss_pred HHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeec
Q 009833 334 LSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPS 413 (524)
Q Consensus 334 ~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
+.++++|+++||+|.+|.+...+..+.++..+......... ........+..........+.+.. ..+-+++
T Consensus 269 l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip 340 (417)
T COG2223 269 LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG-------HGGSFVVFVAVFLALFVFAGLGNG-SVFKMIP 340 (417)
T ss_pred HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc-------cCcchHHHHHHHHHHHHHhccCcc-hheeech
Confidence 99999999999999999999888888887777665421000 012222333333333333333333 3455566
Q ss_pred ccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhH-HHHHHHHHHHHHHHH
Q 009833 414 ETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIF-LFFSGWVLIMSCFVF 470 (524)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~~~~~ 470 (524)
..+|. +.|.+.|+....+.+|++.-|..++...+..| +... +.+..+..++.++.+
T Consensus 341 ~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 341 VIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77665 56888999999999999999999999999988 4433 333333333333333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=251.95 Aligned_cols=328 Identities=16% Similarity=0.186 Sum_probs=231.9
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
+.+|.+.+++ |+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.
T Consensus 12 p~~~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 74 (377)
T PRK11102 12 PALPVIAADF-----------------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA 74 (377)
T ss_pred ccHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 5668888888 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++. .+.+..+||+.|++.
T Consensus 75 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 75 LAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG---WLLVWFSWHAIFWVL 151 (377)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999844 344457899999998
Q ss_pred HHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 210 GIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 210 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
+++.++..+. .+++||+++. +++ + +.+. ++...++++.++++. ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~---~~~-~-------------~~~~------------~~~~~~~~~~~~~~~----~~~ 198 (377)
T PRK11102 152 ALAAILAAALVFFFIPETLPK---ERR-Q-------------PFHL------------RTTIRNFASLFRHKR----VLG 198 (377)
T ss_pred HHHHHHHHHHHHHhCCccCcc---ccc-C-------------CCCh------------HHHHHHHHHHHcChH----HHH
Confidence 8877776555 4567775421 000 0 0000 000112334454443 233
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIA 367 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 367 (524)
..+..+........+..+.|.+. +.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555556555 55899999999999999999999999999999999999988877765444333322
Q ss_pred HHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHH-HHHHHHHHH
Q 009833 368 IILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL-LFTFVIAQA 442 (524)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~ 442 (524)
.... .....+........+....... .+....+..|..| +.++++.++.+.... ++..+++.+
T Consensus 279 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 279 VSAL----------LDLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHH----------HhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2210 1111122222222222222221 1222334456666 678999988777654 444444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=246.66 Aligned_cols=341 Identities=22% Similarity=0.307 Sum_probs=273.2
Q ss_pred HhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHH
Q 009833 34 TGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLT 113 (524)
Q Consensus 34 l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 113 (524)
++.+..+++..... ..+|.+.+++ |.+..+.+++.+.+.++..++++++|+++||+|||+.
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~ 66 (352)
T cd06174 6 LGFFLSGLDRGLLS--PALPLLAEDL-----------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV 66 (352)
T ss_pred HHHHHHHHhhhhhH--hhHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh
Confidence 34455555665555 4457888887 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 009833 114 MLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193 (524)
Q Consensus 114 l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~ 193 (524)
+..+.++..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 145 (352)
T cd06174 67 LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL- 145 (352)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred ccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccch
Q 009833 194 SHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF 273 (524)
Q Consensus 194 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
+.+..+||+.+++.+++.++..+...+++
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 174 (352)
T cd06174 146 --LAESLGWRWLFLILAILGLLLALLLLFLL------------------------------------------------- 174 (352)
T ss_pred --HHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 44456799999998888777666543322
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhc-CCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchh-H
Q 009833 274 RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL-GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM-L 351 (524)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~-~ 351 (524)
+.++...+..+...........+.|.+.++. |.+..+.+.......++..++.++.+++.||++||+ .
T Consensus 175 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (352)
T cd06174 175 ----------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244 (352)
T ss_pred ----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1144455555556666677788888888764 889999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHH
Q 009833 352 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV 431 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 431 (524)
+..+.....++...+... .+ .+.......+.+.+ .....+....+..|..|++.|++..|+.+..
T Consensus 245 ~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T cd06174 245 LLIGLLLAALGLLLLALA------------PS--LALLLVALLLLGFG-LGFAFPALLTLASELAPPEARGTASGLFNTF 309 (352)
T ss_pred HHHHHHHHHHHHHHHHHh------------cc--HHHHHHHHHHHHHH-HhccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 887777777766655542 11 22222233333333 3333466677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 432 NLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 432 ~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
..++..+++.+.+.+.+..++...+.......+.+.+..
T Consensus 310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999988887766666555555544443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=248.54 Aligned_cols=329 Identities=15% Similarity=0.198 Sum_probs=229.0
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+++ |.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++.
T Consensus 24 ~~lp~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 24 VGLPRIAADL-----------------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred hhHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 5578999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.++.. +.+..+||+.|++.
T Consensus 87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~---l~~~~g~~~~~~~~ 163 (392)
T PRK10473 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL---IMLKFPWQSLFYTM 163 (392)
T ss_pred HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCcChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988544 33457899999998
Q ss_pred HHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 210 GIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 210 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
++..++..++ .+++||+++. +++ ++ ... ....++.++++.......
T Consensus 164 ~~~~~i~~~~~~~~~~~~~~~---~~~-~~--------------~~~--------------~~~~~~~~~~~~~~~~~~- 210 (392)
T PRK10473 164 AAMGILVLLLSLFILKETRPA---RAP-AA--------------SSK--------------PRENSESLLNRFFLSRLV- 210 (392)
T ss_pred HHHHHHHHHHHHHHcCCCCCc---ccC-Cc--------------cch--------------HHHHHHHHhCHHHHHHHH-
Confidence 8877766655 4556775421 000 00 000 001112233333211111
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIA 367 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 367 (524)
...........+..+.|.++ +++|+++.+.+...+...++.+++.++.+++.||++||+.+..+.....++.+.+.
T Consensus 211 ---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 211 ---ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred ---HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 11111222233444556555 45799988889888899999999999999999999999998888776666655554
Q ss_pred HHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 368 IILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
... ... ...........+.+.+... ....+..|.+.|+ +.......++..+++.+.+.+.
T Consensus 288 ~~~------------~~~--~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 288 LSP------------SHA--VSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHH------------HHH--HHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 431 111 1122122222222222111 1223444544443 3333444566666777777777
Q ss_pred hhhchhh
Q 009833 448 CHFKFGI 454 (524)
Q Consensus 448 ~~~g~~~ 454 (524)
+..++..
T Consensus 348 ~~~g~~~ 354 (392)
T PRK10473 348 AVLGISA 354 (392)
T ss_pred HHhccch
Confidence 7766543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=246.02 Aligned_cols=318 Identities=13% Similarity=0.086 Sum_probs=228.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|+|..++|++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGR 235 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~ 235 (524)
+++.|++|+++|++++++......+|..+||.++..+. .++||+.|++.++..++..++ .++.||.+. .+
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~ 192 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----ST 192 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cc
Confidence 99999999999999999999999999999999965543 368999999988877665544 344554210 00
Q ss_pred hhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcC
Q 009833 236 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 315 (524)
.+ ++.+.++++.++++.. +...+..+...........+.|.+.++.+
T Consensus 193 ~~-----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 193 VR-----------------------------TPVREGMTRVLRDKRF----VTYVLTLTGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred cc-----------------------------hhhHHHHHHHHcCchH----HHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 00 0001123445555442 22222222222222334567888887766
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhhhc-ccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHH
Q 009833 316 FGGSASLYSTVITGAVNVLSTLVSIYSVD-KVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMIC 394 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (524)
.++.+.+...+...+....+....+++.| |++.++.+..+..+..++...+... + ..+.......
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------~--~~~~~~~~~~ 305 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------S--NLQQLFTLIC 305 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------h--hHHHHHHHHH
Confidence 67777888777777766655555555554 5665665665555555554443321 1 1122222222
Q ss_pred HHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 395 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 451 (524)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 451 (524)
++..+.. ...|....+..+..|++.||++.|+.+....++..++|.+.|.+.|..+
T Consensus 306 l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 306 LFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 2222222 2234445666789999999999999999999999999999999998753
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=252.22 Aligned_cols=372 Identities=12% Similarity=0.100 Sum_probs=252.9
Q ss_pred hhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-----hh
Q 009833 36 GLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GR 110 (524)
Q Consensus 36 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Gr 110 (524)
.+..|......+ ..+|.+.++. |.+..++|.+ +.....+ ++.+++|+++||+ ||
T Consensus 21 ~~~~gl~~~~~~--~~l~~~l~~~-----------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 21 GFASGLPLALTS--GTLQAWMTVE-----------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhC-----------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 345566666665 4457777776 8999999997 4444444 5899999999999 99
Q ss_pred HHH-HHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHH
Q 009833 111 RLT-MLIAGIFFIAGVAFNVAA---QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFA 186 (524)
Q Consensus 111 r~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~ 186 (524)
|+. ++.+.++.+++..++++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.+++
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg 159 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS 159 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 885 667777777887777775 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCC-CcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 009833 187 NLVNYGTSHIKS-QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRI 265 (524)
Q Consensus 187 ~~~~~~~~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (524)
+.++.. +.+ ..|||..|++.+++.++..+..+++||+++.. .+ ++ +.
T Consensus 160 ~~l~~~---l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~--------------~~----------- 207 (491)
T PRK11010 160 GGLALW---LADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK--------------TL----------- 207 (491)
T ss_pred HHHHHH---HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc--------------ch-----------
Confidence 988443 334 36999999999988777766666678865210 00 00 00
Q ss_pred hhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHhcCCCCcchhHHHH-HHHHHHHHHHhhhhhhh
Q 009833 266 AKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKTLGFGGSASLYSTV-ITGAVNVLSTLVSIYSV 343 (524)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~ 343 (524)
+++...++++.++++..+... +..+...........+.+.+ .++.|++..+.+.... ...++.+++.+++|+++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~l----l~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~ 283 (491)
T PRK11010 208 EQAVVAPLRDFFGRNNAWLIL----LLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILM 283 (491)
T ss_pred hhhHHHHHHHHHcCcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112344555544422211 11222222233334445544 4568999999998874 55678999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhh
Q 009833 344 DKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSA 423 (524)
Q Consensus 344 d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 423 (524)
||+++|+.+..+.++..+..+.+..... ..+..+.......+.....+... +....+..+..+++.+++
T Consensus 284 dr~g~~~~l~i~~~l~~l~~l~~~~l~~----------~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t 352 (491)
T PRK11010 284 QRLSLFRALMIFGILQGVSNAGYWLLSI----------TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSAT 352 (491)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh----------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHH
Confidence 9999988777665554544433322111 11111111111111111111111 222455567888888999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhccc
Q 009833 424 GQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 424 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (524)
..++.+....++..+++.+.|.+.+..|+...+.+..++.+.+++.....++
T Consensus 353 ~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 353 QFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887777777777766666655554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=247.23 Aligned_cols=348 Identities=10% Similarity=0.094 Sum_probs=247.8
Q ss_pred HHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh
Q 009833 29 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL 108 (524)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 108 (524)
..++++..+..|+..+..+ +.+|.+++++ |++..+.|++.+.+++++.+++++.|++.||+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~--~l~~~~~~~~-----------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~ 65 (410)
T TIGR00885 5 FALITSLFALWGFANDITN--PMVPQFQQAF-----------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 (410)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677888888877 4558999999 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 009833 109 GRRLTMLIAGIFFIAGVAFNVA---AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185 (524)
Q Consensus 109 Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 185 (524)
|||+++..++++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+
T Consensus 66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 3689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCC-----------------------CCcchHHHHHhhHHHHHHHHHHhhc--ccCChHHHHhcCChhHHH
Q 009833 186 ANLVNYGTSHIK-----------------------SQWGWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGK 240 (524)
Q Consensus 186 ~~~~~~~~~~~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~ 240 (524)
++.++....... +..+||++|++.+++.++..++..+ .||.++ + ++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~~-- 216 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-DA-- 216 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-cc--
Confidence 999865442110 1246999999988877766554433 343210 0 00
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcC--CCC
Q 009833 241 AVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG--FGG 318 (524)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~ 318 (524)
++...+.+.+++++++. ++...+..++..........+++.+.++.+ .+.
T Consensus 217 ------------------------~~~~~~~~~~~~~~~~~----~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~ 268 (410)
T TIGR00885 217 ------------------------KQISFSASLSRLARIRH----YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA 268 (410)
T ss_pred ------------------------ccccchhhHHHHHhChh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH
Confidence 00000112334455554 333344444444555556677777776543 333
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHh
Q 009833 319 SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFIS 398 (524)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (524)
..+............+|+++++++.||+++|+.+.+...+..+..++.... .. . .....+...+.
T Consensus 269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------------~~-~--~~~~~l~~~gl 333 (410)
T TIGR00885 269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------------GG-H--VGLYCLTLCSA 333 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CC-h--HHHHHHHHHHH
Confidence 344555666667889999999999999999998887766666655555432 11 1 11222333333
Q ss_pred hhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 399 AFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
+.+..+ |..+....+..+++.+..+.++.... +|+.+.|++.|.+.|..
T Consensus 334 f~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 334 FMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 333333 66666667888877654454544443 89999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=240.63 Aligned_cols=340 Identities=10% Similarity=0.103 Sum_probs=222.4
Q ss_pred cCCcchhHHHHHHHHH-HHHHHHHhhHHHhhhhhhHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTM-LIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l-~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|+|.+++|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++.++.+++++++.+++.+.+.|...+...|.
T Consensus 47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 125 (393)
T PRK15011 47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQ 125 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999876655 55666655555 9999999865 5666666788888889999998877666555555677888
Q ss_pred hhhhhhccCCCCCc--chhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHH
Q 009833 155 VPLFLSEIAPTRIR--GGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLI 231 (524)
Q Consensus 155 ~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~ 231 (524)
..+++.|+.++++| +...++.+.+.++|.++||+++. .+.+++|||..|++.++..++..+. .+++||.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~---~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-- 200 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY---ALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE-- 200 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH---HHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC--
Confidence 88888888876655 34457888899999999999954 4444579999999998877776655 4557876421
Q ss_pred hcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 009833 232 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 311 (524)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (524)
+++ ++ + +.+...++++ ..+...... .........+..+.|.++
T Consensus 201 -~~~-~~----------------------------~----~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~p~~l 243 (393)
T PRK15011 201 -LPL-AT----------------------------G----TLEAPRRNRR--DTLLLFVIC-TLMWGTNSLYIINMPLFI 243 (393)
T ss_pred -Ccc-cc----------------------------c----cccccccccc--cHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 000 00 0 0000001111 111111222 222233444556788777
Q ss_pred H-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHH
Q 009833 312 K-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 390 (524)
Q Consensus 312 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (524)
+ ++|+++.+.+.+.....++.+++.++.|+++||++||+.+..+.....+....+.. .+ ..+..+
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~l 309 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-------------AH-SPAILL 309 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------------Hh-hHHHHH
Confidence 5 58898888888877777888889999999999999998776654444333222211 11 111111
Q ss_pred HHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 391 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
....+.....+... +....+..|..|+ .++++.++.+...++|..+++.+.|.+.+..++...+.......+.+++.+
T Consensus 310 ~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 310 GLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 11111111111111 1223345688885 499999999999999999999999999998888777766666666666666
Q ss_pred Hhccc
Q 009833 471 FLLPE 475 (524)
Q Consensus 471 ~~~~~ 475 (524)
++.+|
T Consensus 388 ~~~~~ 392 (393)
T PRK15011 388 LRIKD 392 (393)
T ss_pred HhhcC
Confidence 65554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=241.46 Aligned_cols=339 Identities=12% Similarity=0.047 Sum_probs=232.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++++++++++.++.+. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999888777664 7889999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCCh
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRF 236 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 236 (524)
+++.|++|+++|++++++.+....+|.++||.+++.+.. +.|+..+.+.+...++..+..+.+||+|+.. +++.
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~ 184 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIPRLGARR--PGQS 184 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccC
Confidence 999999999999999999999999999999999665543 2478777776665555545556788865321 0000
Q ss_pred hHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcC
Q 009833 237 EEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLG 315 (524)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 315 (524)
++..+ ...+ .+..++.+++++..+..++...+.+. .........|.+++ .+|
T Consensus 185 ~~~~~-------------~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 185 WNPIA-------------LLRD----------FFHACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALG 237 (393)
T ss_pred CCHHH-------------HHHH----------HHHHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcC
Confidence 00000 0000 01112345555553333322222221 12233344455554 479
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHH
Q 009833 316 FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICT 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
.++.+.+......+++.+++.+..+++.||.++++.+..+. ..++....+.. . +..+.......+
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~-------------~-~~~~~~~~~~~~ 302 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL-------------Q-HSLLPAYPLLIL 302 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH-------------H-hHHHHHHHHHHH
Confidence 99999999999999999999999999999998887776653 22222222211 1 122222233333
Q ss_pred HHhhhccccccccceeecccCCchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 009833 396 FISAFAWSWGPLGWLIPSETFPLET-RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCF 468 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (524)
.+.+.+....+. .....+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+..++.+....
T Consensus 303 ~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 303 IGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 333333333333 344456655554 69999999999999999999988855 566755555555555544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=246.01 Aligned_cols=259 Identities=18% Similarity=0.208 Sum_probs=209.9
Q ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 009833 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 73 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
.++.+....+.+.+.++++++++++.+++|.+.||++..+.+....+++++-.++....+|++.+++.|++.|+.++..+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 34448999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccC---CCCcchHHHHHhhHHHHHHHHHH-hhcccCChH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHI---KSQWGWRISLGLAGIPAALLTVG-SLLVTDTPN 228 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~ 228 (524)
|....+++.|+.+++|++.++++.+..++|.++|.++++.+..+ ....||||.|++.+++.++..++ .+++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 99999999999999999999999999999999999997764221 22468999999999999998877 666999985
Q ss_pred HHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 009833 229 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAP 308 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
...-. .++|.+-..++.+..+.... .++.++..+++.++.+. +|...+..++.....+++.+|+|
T Consensus 233 ~~~fl-~~~ek~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~~~~lp 297 (495)
T KOG2533|consen 233 KAWFL-TDEEKELVVERLRESPSGGI----------ENKFKWKGFKEALKDPG----VWPFSLCYFFLKLVNYGFSYWLP 297 (495)
T ss_pred hcccc-chHHHHHHHHHHHhccCCCc----------ccccCHHHHHHHHhchh----HHHHHHHHHHHhhccccHHHHHH
Confidence 22111 11111111111111110000 00122344566677776 88888888888888899999999
Q ss_pred HHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc
Q 009833 309 VLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV 346 (524)
Q Consensus 309 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (524)
.++++ .|++..++..+.++..++++++.+++|+++||+
T Consensus 298 l~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 298 LYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 99988 679999999999999999999999999999994
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=242.16 Aligned_cols=330 Identities=11% Similarity=0.036 Sum_probs=232.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|++..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+...
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGR 235 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~ 235 (524)
++..|.+|+++|++++++.....++|.+++|+++.... + .+||..|++.++..++..++ .+++||+++. + +
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~-~ 190 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---M-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---I-A 190 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hccCcHHHHHHHHHHHHHHHHHHHHhccccc---c-c
Confidence 99999999999999999999999999999999966543 2 58999999888777766544 3445554210 0 0
Q ss_pred hhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH---
Q 009833 236 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK--- 312 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 312 (524)
++ + + + ....++.++++..+. ..+..++.......+..+.+.+..
T Consensus 191 -~~---------------~---------~--~--~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 191 -TE---------------T---------G--S--VWSPSVLLQDKALLW----FTCSGFLASFVSGAFASCISQYVMVVA 237 (395)
T ss_pred -cc---------------h---------h--h--hhhhhhhccCceehH----HHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 00 0 0 0 001134455555322 222222222222333334444442
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHH
Q 009833 313 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 392 (524)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (524)
+.+.+....+.......+.........+++.||.++|+.+..+..+..++...+... . +..+...+.
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~ 304 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------G-NSLLLWGMS 304 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------c-hHHHHHHHH
Confidence 344555556667777766666777788899999999998887776666665544321 1 122222222
Q ss_pred HHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 009833 393 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 462 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (524)
...+..+. ....|....++.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+...+.+
T Consensus 305 ~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~ 372 (395)
T PRK10054 305 AAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALA 372 (395)
T ss_pred HHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence 22333222 2223455566678889999999988754 67789999999999999999876555544333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=241.68 Aligned_cols=331 Identities=16% Similarity=0.160 Sum_probs=232.1
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
+.+|.+.+++ |+|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+++.
T Consensus 29 p~~~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 29 PAIADMARDL-----------------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred ccHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 4468888888 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
++++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.++.. +.+..+||+.|++.
T Consensus 92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---l~~~~g~~~~f~~~ 168 (394)
T PRK11652 92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL---LTTLFGWRACYLFL 168 (394)
T ss_pred HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccChHHHHHHH
Confidence 999999999999999999998888888899999999999999999999999999999998544 44457899999998
Q ss_pred HHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHH
Q 009833 210 GIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIA 288 (524)
Q Consensus 210 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (524)
++..++..++ .++.||+++.. + ++ ++.+..+++.++++..+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~----~-~~----------------------------~~~~~~~~~~~~~~~~~~~~-- 213 (394)
T PRK11652 169 LLLGAGVTFSMARWMPETRPAD----A-RR----------------------------TRVLASYRTLLSNRRFNCYL-- 213 (394)
T ss_pred HHHHHHHHHHHHHhCCccCccc----c-ch----------------------------hHHHHHHHHHHcChHHHHHH--
Confidence 8776665544 45677764210 0 00 00112233444444422222
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIA 367 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~ 367 (524)
+..+........+..+.+.++++ +|++..+.+.......++.+++.++.+++.||.+++... ......+..+.+.
T Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 289 (394)
T PRK11652 214 --LMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMW 289 (394)
T ss_pred --HHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 22222223334444455666655 888888888888888888888888899999988733322 2222222222211
Q ss_pred HHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 368 IILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
..... .....+.......+...+.+. ..|....+..|..| +.++++.++.+....+++.+++.+.+.+.
T Consensus 290 ~~~~~---------~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 290 IPGWF---------GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHh---------ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11000 111122223333333333332 23444555567776 56899999999999999999999988776
Q ss_pred hhh
Q 009833 448 CHF 450 (524)
Q Consensus 448 ~~~ 450 (524)
...
T Consensus 359 ~~~ 361 (394)
T PRK11652 359 QTG 361 (394)
T ss_pred CCc
Confidence 553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=235.38 Aligned_cols=328 Identities=13% Similarity=0.115 Sum_probs=234.8
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..+|.+.+++ |+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+
T Consensus 21 ~~lp~l~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~- 82 (355)
T TIGR00896 21 PLLPQIRSAL-----------------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR- 82 (355)
T ss_pred ccHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence 5678999998 9999999999999999999999999999999999999999999988888877
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
.+++++.+++.|++.|++.+...+....++.|+++ ++|++++++.+.+.++|..+++.++........ .+||+.|.+.
T Consensus 83 ~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~ 160 (355)
T TIGR00896 83 SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWW 160 (355)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Confidence 77899999999999999999988888889999886 579999999999999999999888443322111 2499998877
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHH
Q 009833 210 GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAV 289 (524)
Q Consensus 210 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (524)
++..++... .++|+.++ +.++ +++..+...++.++++. ++..
T Consensus 161 ~~~~~~~~~--~~~~~~~~------~~~~--------------------------~~~~~~~~~~~~~~~~~----~~~~ 202 (355)
T TIGR00896 161 ALPALLALL--AWIPQVRR------RVAA--------------------------NQTTTRLTPVRIWRSPL----AWQV 202 (355)
T ss_pred HHHHHHHHH--HHhhhhcc------ccCC--------------------------CCCCCCCCCchhhcCHh----HHHH
Confidence 665443322 23343321 0000 00001122344455443 3333
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc-CchhHHHHHHHHHHHHHHHHHH
Q 009833 290 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMFLSQTVIAI 368 (524)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~ 368 (524)
.+..+.....+.....+.|.++++.|++..+.+...+...++.++++++.|++.||+ +||+.+..+..+..++.+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
T TIGR00896 203 TVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF 282 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 333444444456677789999888899999999999999999999999999999999 4566666666666555544443
Q ss_pred HHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeec-ccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 369 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPS-ETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
. ....... ...+++.+.+.. .+....... +..+++.++...++.+..++++..++|.+.|.+.
T Consensus 283 ~------------~~~~~~~---~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 283 A------------PMHGLWA---WALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred h------------hhhHHHH---HHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111111 122222222222 233223333 3334567788899999999999999999999999
Q ss_pred hhhc
Q 009833 448 CHFK 451 (524)
Q Consensus 448 ~~~g 451 (524)
|+.+
T Consensus 347 ~~~g 350 (355)
T TIGR00896 347 DISG 350 (355)
T ss_pred HHhc
Confidence 9876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=239.64 Aligned_cols=322 Identities=13% Similarity=0.088 Sum_probs=215.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|+|..+.+++.+++.+++.++++++|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+ ..+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 111 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASC 111 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999966 45667
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhccc-CC------CCcchHHHH-HhhHHHHHHHHHH-hhcccCC
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH-IK------SQWGWRISL-GLAGIPAALLTVG-SLLVTDT 226 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~-~~------~~~~wr~~f-~~~~~~~~~~~~~-~~~~~e~ 226 (524)
..++.|++|+++|++++++.....++|..+++.++..+.. .. ++.+||+.| +..++...+..++ ..+.+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 8899999999999999999997777777777666433221 11 235899999 4445544444333 4556666
Q ss_pred hHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHh
Q 009833 227 PNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFY 306 (524)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (524)
|+.. .+.++. ..++..... +++......+.++++. ++...+..+........+..+
T Consensus 192 ~~~~---~~~~~~-------~~~~~~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 247 (366)
T TIGR00886 192 PPGK---PATGKL-------SFKGARWSV----------GTGALGDQLKVFRDRH----TWILALLYSVTFGSFLGVSSI 247 (366)
T ss_pred Cccc---ccchhc-------ccccccccc----------cchhHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHH
Confidence 5310 000000 000000000 0000012334444444 333444444444445566777
Q ss_pred HHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhH
Q 009833 307 APVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 385 (524)
Q Consensus 307 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (524)
.|.++++ +|+++.+++.......+..++++++.+++.||+++|+.+..+......+...+..... ....
T Consensus 248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 317 (366)
T TIGR00886 248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV----------SPLS 317 (366)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC----------Ccch
Confidence 8877754 7999999998888899999999999999999999988777666555554444433210 1002
Q ss_pred HHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHH
Q 009833 386 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 435 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 435 (524)
...............+... +..+.+.++..| +.+|++.|+.+..+++|
T Consensus 318 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 318 LAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 2222222222222233222 234555667776 57999999988887664
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=235.80 Aligned_cols=352 Identities=14% Similarity=0.081 Sum_probs=249.2
Q ss_pred hhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHH-
Q 009833 36 GLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM- 114 (524)
Q Consensus 36 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l- 114 (524)
.+.+....++.. +.+|.+.+++ |+|..++|++.+++.++..++++++|+++||+||+...
T Consensus 13 ~~~~~~~~~~~~--p~l~~~l~~~-----------------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~ 73 (382)
T TIGR00902 13 FFGYFCAYGIFL--PFFPAWLKGI-----------------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIAL 73 (382)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344444445544 5568888888 99999999999999999999999999999999985433
Q ss_pred ---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009833 115 ---LIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 191 (524)
Q Consensus 115 ---~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~ 191 (524)
..+..+..+ ..+..+++++.+++.|+++|.+.+...|...++..++ +++|+++++....+.++|.+++|++
T Consensus 74 ~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l-- 147 (382)
T TIGR00902 74 RLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSAL-- 147 (382)
T ss_pred HHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHH--
Confidence 233222222 2445678999999999999999998899988887765 4678999999999999999999998
Q ss_pred hcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhcc
Q 009833 192 GTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKH 271 (524)
Q Consensus 192 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (524)
.+.+.+.+|||..|++.++..++..+.. .++|+++. +++.++ .+.+...
T Consensus 148 -~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~--------------------------~~~~~~~ 196 (382)
T TIGR00902 148 -FGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTIPP---KDAIPE--------------------------DESQGDS 196 (382)
T ss_pred -HHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCCCC---Cccccc--------------------------cccccch
Confidence 4455566899999988765533333223 33333200 000000 0000112
Q ss_pred chhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhH
Q 009833 272 PFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRML 351 (524)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~ 351 (524)
+.++++|+++ ++...+..+........+..+.|.++++.|.++...+.......++.+++....+++.||+++|+.
T Consensus 197 ~~~~~l~~~~----~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~ 272 (382)
T TIGR00902 197 AFIALLKNPM----NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL 272 (382)
T ss_pred hHHHHHcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence 3455666655 444444444445556667778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHH-
Q 009833 352 LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC- 430 (524)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~- 430 (524)
+.++.+...+....+... ++.+..+....+.+..++... +....++++. |++.++++.++.+.
T Consensus 273 l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~ 336 (382)
T TIGR00902 273 LLISAIACVGRWAIIGAI--------------EAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNAL 336 (382)
T ss_pred HHHHHHHHHHHHHHHHhH--------------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHH
Confidence 998888887777665432 122333334444444444433 3345566677 88899999999764
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009833 431 VNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 463 (524)
Q Consensus 431 ~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (524)
...+|..+++.+.|.+.|+.+...++..+++.+
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 567899999999999999998765555555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=225.28 Aligned_cols=353 Identities=10% Similarity=0.070 Sum_probs=237.8
Q ss_pred cchhhhhhhhhhhhccccCCCCCCcccCCcch-hHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 51 AMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQG-LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 51 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
+.|.+.+++ |+|++| .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.+
T Consensus 48 a~p~L~~el-----------------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~ 110 (511)
T TIGR00806 48 ITPYLLTVL-----------------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL 110 (511)
T ss_pred HHHHHHHHc-----------------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 447888888 999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
+++++..+.+.|++.|++.|+.+ +...++..|+|+++|+++.++..++..+|.+++++++..+ ..+|||+.+.+.
T Consensus 111 fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll----~s~gWr~y~~Ln 185 (511)
T TIGR00806 111 LGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL----VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCchhHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999996552 246899765543
Q ss_pred ---HHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchH--HHHHHH-HHHHHhhhhccchhhhcccCchh
Q 009833 210 ---GIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEP--EFLELV-EASRIAKEVKHPFRNLLKRRNRP 283 (524)
Q Consensus 210 ---~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 283 (524)
.....+.+++.+++|..++.+..+++.+.......+.....+.+. ..+..+ .....-+.....+++..+++.
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~-- 263 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ-- 263 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc--
Confidence 333344445577888666655444332110000000000000000 000000 000000111223333444444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCC-CcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 009833 284 QLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362 (524)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 362 (524)
++...+.+.....+++.+.+|...+.++..-+ ....|..-++..+.+.++.+..|++-.++.+.-.+.++.....-+
T Consensus 264 --vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~ 341 (511)
T TIGR00806 264 --LLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQA 341 (511)
T ss_pred --hhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Confidence 56666777777778888888988888775332 236677778888888888999999866554433333333322222
Q ss_pred HHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 363 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
.+++... ..++.|...+...++...+.+... +...-+++....+.-|...|+++++..+...+-..+
T Consensus 342 gll~~m~------------~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 342 GLVFWMS------------QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHhhhhh------------cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 2222221 344566666666666666665543 333333455566667889999888777666554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=229.51 Aligned_cols=368 Identities=13% Similarity=0.109 Sum_probs=244.8
Q ss_pred hhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-----h
Q 009833 35 GGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----G 109 (524)
Q Consensus 35 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----G 109 (524)
.++..|+..+... ..+|.+.++- |+|.+++|++..+... .+..+++|+++||+ |
T Consensus 7 l~~~~~~~~~~~~--~~~~~~l~~~-----------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 7 LGFASGLPLALTS--GTLQAWMTVE-----------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 3456666777766 5668888887 9999999999777776 68999999999999 8
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 009833 110 RRL-TMLIAGIFFIAGVAFNVAA---QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185 (524)
Q Consensus 110 rr~-~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 185 (524)
||| +++++.++.+++..+.++. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++
T Consensus 66 ~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 66 RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 765 7888888888888887776 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCC-cchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 009833 186 ANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASR 264 (524)
Q Consensus 186 ~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (524)
++.++.. +.+. +|||..|++.++..++..+..+++||+++. +++.++ .
T Consensus 146 g~~l~~~---l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~----------------~--------- 194 (402)
T PRK11902 146 SGGLALW---LADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS----------------L--------- 194 (402)
T ss_pred HhHHHHH---HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch----------------h---------
Confidence 9988443 3333 589999999888777666656667776421 000000 0
Q ss_pred HhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHH-HHHHHHHhhhhhhh
Q 009833 265 IAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITG-AVNVLSTLVSIYSV 343 (524)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 343 (524)
.++.+..++++++++..+..+....+...... .......+.+.++.|+++.+.+.+....+ ++.+++.++++++.
T Consensus 195 -~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~ 270 (402)
T PRK11902 195 -GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLM 270 (402)
T ss_pred -HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00012235566677664433322222221111 11122334455668999888888876554 46889999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHH---HHHhhhccccccccceeecccCCchh
Q 009833 344 DKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMIC---TFISAFAWSWGPLGWLIPSETFPLET 420 (524)
Q Consensus 344 d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~ 420 (524)
||+++|+.+..+..+..+..+.+..... ..+..+....... +..+.......+....++.+.+|.+.
T Consensus 271 ~r~g~~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T PRK11902 271 VRLGLYRSLMLFGVLQAVSNLGYWVLAV----------TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ 340 (402)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 9999998877666655544433322111 1111122222111 11112222222344455566666554
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
+ ++.+....++..+++.+.|.+.|..|+...+..++++.+.+++....
T Consensus 341 ~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 341 Y----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3 45555556677767778999999999887777776666655555433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=227.67 Aligned_cols=336 Identities=14% Similarity=0.087 Sum_probs=230.8
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhH----HHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR----LTMLIAGIFFIAGV 125 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~l~~~~~l~~~~~ 125 (524)
+.+|.+.+++ |.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ..
T Consensus 25 p~l~~~l~~~-----------------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~ 85 (382)
T PRK11128 25 PFWSVWLKGQ-----------------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AV 85 (382)
T ss_pred hhHHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HH
Confidence 5557888888 99999999999999999999999999999999984 3333222222 22
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH
Q 009833 126 AFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRIS 205 (524)
Q Consensus 126 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~ 205 (524)
.....++++|.+++.|++.|++.+...+...+++.++ .++|+++++......++|.++||+++ +.+.+++|||..
T Consensus 86 ~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lg---g~l~~~~g~~~~ 160 (382)
T PRK11128 86 AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALT---GKLVSWFGEQAI 160 (382)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHH---HHHHHHcChhHH
Confidence 3344468899999999999999999999888888876 35588889999999999999999994 444556799999
Q ss_pred HHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHH
Q 009833 206 LGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 285 (524)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (524)
|++.++..++..+..++.||.++ +++.++ ..++...++++++|++.
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~---- 206 (382)
T PRK11128 161 LWILTAGVASMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPT---- 206 (382)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChh----
Confidence 98877655554444444554321 000000 00011234566777665
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++...+..+...........+.|.+.++.|.+..+.+.......++.++..++.+++.||+++|+.+..+.+...+..+.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~ 286 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL 286 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 33333333333333445556667777888999888999988888899999999999999999999988887776666554
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHH-HHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV-NLLFTFVIAQAFL 444 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 444 (524)
+... +..+...+..++.+..+... .+....+..+. +++.+++..++.+.. ..+|..++|.+.|
T Consensus 287 ~~~~--------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G 350 (382)
T PRK11128 287 MGST--------------TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSG 350 (382)
T ss_pred HHhh--------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 12233333333333333332 23334444555 556678888887644 4567789999999
Q ss_pred HHHhhhchhhHHHHH
Q 009833 445 SMLCHFKFGIFLFFS 459 (524)
Q Consensus 445 ~~~~~~g~~~~~~~~ 459 (524)
.+.|..+...++..+
T Consensus 351 ~l~~~~g~~~~~~~~ 365 (382)
T PRK11128 351 FLYQHLGAGVFWVMA 365 (382)
T ss_pred HHHHhccHHHHHHHH
Confidence 999998875444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=226.14 Aligned_cols=347 Identities=11% Similarity=0.056 Sum_probs=227.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhh-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR-RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|++..|+|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...+..
T Consensus 34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (418)
T TIGR00889 34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALT 113 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHH
Confidence 9999999999999999999999999999999965 788898899888888888899999999999999999887777766
Q ss_pred hhhhh--------ccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCCh
Q 009833 156 PLFLS--------EIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 227 (524)
Q Consensus 156 ~~~i~--------~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 227 (524)
.++.. |......|.+.+| .+|.++++.++..... ...|+ +|++.++..++..+..+++||+|
T Consensus 114 ~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~-~f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 114 NSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNI-QLYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred HHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 55432 2233334555555 3577777777443321 22354 45566665555555566788875
Q ss_pred HHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 009833 228 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
+. +++.+. + . ++..+.+.++.+|++... .+.+..+...........+.
T Consensus 184 ~~---~~~~~~--------------~--------~---~~~~~~~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~~~~ 231 (418)
T TIGR00889 184 VA---KSTAKM--------------S--------I---KVMLGLDAFILFKNKRMA----IFFFFSMLLGAPLQITNIFG 231 (418)
T ss_pred CC---cccccc--------------C--------H---HHHhhhhHHHHhcCCCee----eHHHHHHHHHhHHHHHHHhH
Confidence 21 000000 0 0 000011233455555522 22222222222233444566
Q ss_pred HHHHHhcCCCC--------cchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 308 PVLFKTLGFGG--------SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 308 ~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
+.++++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++..+....+....
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 76777666543 4568888888899999999999999999999999988887766655444310
Q ss_pred cchhh-HHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhhc------
Q 009833 380 DLHTG-FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV-CVNLLFTFVIAQAFLSMLCHFK------ 451 (524)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g------ 451 (524)
... ..+...+..++.+.+... ..+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.++.+
T Consensus 303 --~~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~ 379 (418)
T TIGR00889 303 --PEYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD 379 (418)
T ss_pred --cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence 111 112222223333333222 23444566789999999999999997 5678899999999999999854
Q ss_pred hhhHH-HHHHHHHHHHHHHHHhcccCC
Q 009833 452 FGIFL-FFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 452 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 477 (524)
|...+ ..+++..+.+++.+++.+|++
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 45444 444455555666666666553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=240.43 Aligned_cols=407 Identities=17% Similarity=0.184 Sum_probs=290.3
Q ss_pred hHHHHHHHHHHHhh-hhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhh
Q 009833 23 PIVIVSCIMAATGG-LMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFA 101 (524)
Q Consensus 23 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 101 (524)
-+-|.+++...+.. +.+|...+.- ...+.++++| +.+..+++|+.++......+.+++.
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~G---v~~~~~~~~f-----------------~~s~~~~~~i~sl~~~~~~~~gpl~ 101 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSFG---LLFEELMDYF-----------------GSSSSQIAWIGSLLLGVYLLAGPLV 101 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchheeh---hhHHHHHHHh-----------------CCCccHHHHHHHHHHHHHHHhccHH
Confidence 34566666665544 4444444332 4557888888 8899999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 102 SYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVG-RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 102 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
+.+.||+|.|.+.+.|.++.++|.++.++++++|++++. -++.|+|.|..+......+..+|++| |+.+.|+..++.+
T Consensus 102 s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG 180 (509)
T KOG2504|consen 102 SALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTG 180 (509)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCC
Confidence 999999999999999999999999999999999988876 89999999999999999999888655 9999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc-cCChHHHHhcCChhHHHH---HH--------HHHhC
Q 009833 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-TDTPNSLIERGRFEEGKA---VL--------RKIRG 248 (524)
Q Consensus 181 lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~---~~--------~~~~~ 248 (524)
+|.++-|.+ ...+.+.+|||+.+++.+.+.+-..+....+ |.+++.... +.++.+. .. +....
T Consensus 181 ~G~~~~~~l---~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (509)
T KOG2504|consen 181 VGTVVFPPL---LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRNSAASVESTPKPVELRISE 255 (509)
T ss_pred cceeeHHHH---HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcccccccccccccccccccc
Confidence 999999988 7777778999999999888876666654433 322211000 0000000 00 00000
Q ss_pred CC--Cch---HHHHHHHHHHHHhh--hhccch----hhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCC
Q 009833 249 TD--KIE---PEFLELVEASRIAK--EVKHPF----RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFG 317 (524)
Q Consensus 249 ~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 317 (524)
++ ..+ .+....++..++.. ..+... .++++++. ++.+.+...+...++.....++|.+.+..|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~----fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~ 331 (509)
T KOG2504|consen 256 RDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK----FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLS 331 (509)
T ss_pred CCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 00 000 00000000000000 111111 35555544 77788888888888888999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhhhcccCch--hHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHH
Q 009833 318 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRR--MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICT 395 (524)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (524)
..++..+.++.++..++++++.|++.|+...+ .+..++.+..+++.+.+... ..+..+...++
T Consensus 332 ~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---------------~~~~~l~~~~~ 396 (509)
T KOG2504|consen 332 SNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA---------------TTYVGLIVFSI 396 (509)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHH
Confidence 99999999999999999999999999998743 33444444444444333322 11222333333
Q ss_pred HHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHhcc
Q 009833 396 FISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
+.+.....+..+...++.|..+.+.-..+.|+...+..++..++|++.|.+.|..+ |...+.+++++.+.+.++++..+
T Consensus 397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 33333333334444566799999999999999999999999999999999999888 77888888888888777777666
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=225.67 Aligned_cols=348 Identities=15% Similarity=0.057 Sum_probs=208.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH---hhhh-----HHHHHHHHHHHHhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AAQN-----LAMLIVGRILLGCGV 148 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~ 148 (524)
|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++. ....++++++.|.+.
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF 121 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999887666555433221 1111 111222333344333
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhccc-CCh
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVT-DTP 227 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p 227 (524)
....+....+..+ . .+++++.++......++|..++++++..+.. .+|+++|++.+++.++..++.++++ |.+
T Consensus 122 ~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 122 LAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred ccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence 3333333333222 2 3457788889889999999999999554432 4799999998888777666655543 332
Q ss_pred HHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 009833 228 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
+....+ +.++ . ++++......++.+|++..+...+ ..+.....+.....+.
T Consensus 196 ~~~~~~-~~~~----------~--------------~~~~~~~~~~~~~l~~~~~~~l~l----~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 196 STAKVA-NALG----------A--------------NASAVSLKDALALLKLPKFWFLVL----YVIGVACFYDVFDQQF 246 (420)
T ss_pred chhhhc-cchh----------c--------------ccccccHHHHHHHccCCCeEeehH----HHHHHHHHHHHHHHHH
Confidence 110000 0000 0 000000111233455554322222 1111112222333344
Q ss_pred HHHHHh----cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchh
Q 009833 308 PVLFKT----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 383 (524)
Q Consensus 308 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (524)
|.++.+ .+.+....+.+.+...++..++.++.|++.||+++|+.+..+.++..+...++.+. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~- 313 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------T- 313 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------c-
Confidence 444432 35555667888888888899999999999999999999887777666665554432 1
Q ss_pred hHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 009833 384 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV-TVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 462 (524)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (524)
+.+.......+.+...... .+....++.|.+|++.+++..+. .+....+|..+++.+.|.+.|..|+...+...+..
T Consensus 314 -~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 314 -GPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred -cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 1222222222222222111 12334556788899988888765 56778899999999999999998877666654444
Q ss_pred HH-HHHHHHHhcc
Q 009833 463 LI-MSCFVFFLLP 474 (524)
Q Consensus 463 ~~-~~~~~~~~~~ 474 (524)
.+ ..++..+..+
T Consensus 392 ~~i~~~~~~~~~~ 404 (420)
T PRK09528 392 VLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHhc
Confidence 43 3333333333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=236.92 Aligned_cols=306 Identities=15% Similarity=0.160 Sum_probs=220.3
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhh
Q 009833 30 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 109 (524)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 109 (524)
+..++..+..+...+..+ ..+|.+.++| +++..+.|++.+.+.++++++.++.++++||+|
T Consensus 36 ~~~~~~~~~~~~~~g~~~--~~l~~iek~F-----------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~ 96 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVN--SSLTTIERRF-----------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLH 96 (633)
T ss_pred HHHHHHHHHHHHHHHHHH--hhchhhhhhh-----------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccC
Confidence 333344555555666666 4568888888 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh---------------------------------------------------hHHHHH
Q 009833 110 RRLTMLIAGIFFIAGVAFNVAAQ---------------------------------------------------NLAMLI 138 (524)
Q Consensus 110 rr~~l~~~~~l~~~~~~~~~~~~---------------------------------------------------~~~~l~ 138 (524)
||+++.+++++++++++++++.+ .+..++
T Consensus 97 r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (633)
T TIGR00805 97 RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFL 176 (633)
T ss_pred cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhH
Confidence 99999999999999999998763 245778
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC------------------c
Q 009833 139 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ------------------W 200 (524)
Q Consensus 139 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~------------------~ 200 (524)
++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|++++......... .
T Consensus 177 ~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWi 256 (633)
T TIGR00805 177 VSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWI 256 (633)
T ss_pred HHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHH
Confidence 8999999999999999999999999999999999999999999999999997665432210 1
Q ss_pred -chHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhccc
Q 009833 201 -GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR 279 (524)
Q Consensus 201 -~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (524)
+||..|++.+++.++..+.++++|++.+....+.+.+..++ +... +.. ++.. .+.....++....+++++++
T Consensus 257 GaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~Ll~n 329 (633)
T TIGR00805 257 GAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET--EKLE-KSE-DKSR---KKNSDITKDFPKIIKRLLCN 329 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh--hccc-ccc-cccc---hhhhhhHHHHHHHHHHHHcC
Confidence 38888999888888877666666654211000000000000 0000 000 0000 00000011112345567777
Q ss_pred CchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH-HHHHHHhhhhhhhcccC--chhHHHHH
Q 009833 280 RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVG--RRMLLLEA 355 (524)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~~ 355 (524)
+. ++...+..+........+..|+|.++++ +|+++.+++.+.....+ +.+++.+++|+++||++ .|+.+..+
T Consensus 330 ~~----f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~ 405 (633)
T TIGR00805 330 PI----YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA 405 (633)
T ss_pred cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence 65 6666666666777778888999999875 89999999988887666 56889999999999988 44666666
Q ss_pred HHHHHHHHHH
Q 009833 356 GIQMFLSQTV 365 (524)
Q Consensus 356 ~~~~~~~~~~ 365 (524)
.+...++.+.
T Consensus 406 ~~~~~~~~~~ 415 (633)
T TIGR00805 406 ICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHH
Confidence 5555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=205.71 Aligned_cols=365 Identities=12% Similarity=0.136 Sum_probs=272.3
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh
Q 009833 28 SCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR 107 (524)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 107 (524)
....++...+++|+...... ..+|.+++.| +++..|.+++...++.|+.+++++.|++.+|
T Consensus 14 ~~v~~t~lFfl~G~~~~l~d--iLip~l~~~f-----------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk 74 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLND--ILIPHLKEVF-----------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKK 74 (422)
T ss_pred HHHHHHHHHHHHHHHhhcch--hhHHHHHHHh-----------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444455677888887777 5569999999 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHH
Q 009833 108 LGRRLTMLIAGIFFIAGVAFNV---AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGIL 184 (524)
Q Consensus 108 ~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ 184 (524)
+|+|+.+++|+.++++++.+.. ...+|..++++-++.|.|.+...+.+..++....++++..+.+++.+...++|.+
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~ 154 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI 154 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999984 5678999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHhhcccC----------------CCCcchHHHHHhhHHHHHHHHHHhhc--ccCChHHHHhcCChhHHHHHHHHH
Q 009833 185 FANLVNYGTSHI----------------KSQWGWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKI 246 (524)
Q Consensus 185 ~~~~~~~~~~~~----------------~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~ 246 (524)
++|+++..+... .+...||++|...+...+++.+.... .|+.+.-
T Consensus 155 ~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------- 217 (422)
T COG0738 155 LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------- 217 (422)
T ss_pred HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----------------
Confidence 999996544331 00124888888888777766665443 3443210
Q ss_pred hCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHH
Q 009833 247 RGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYST 325 (524)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 325 (524)
..+..+.++....+++++++ +....+..+++.........|++.++++ .|.+..++....
T Consensus 218 ---------------~~~~~~~~~~~~~~l~~~~~----~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~ 278 (422)
T COG0738 218 ---------------APSLGASGSAGLSSLFQNKH----LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYL 278 (422)
T ss_pred ---------------cccccccccchHHHHHhChH----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 00000111114566777776 6666777777777788888899988877 888999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccc
Q 009833 326 VITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWG 405 (524)
Q Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (524)
+....+.++|++++.++..|+...|.+....++..+.++...+. .. ...+....+.+.+.+ ...
T Consensus 279 s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------------~g---~v~~~~l~~ig~F~s-imf 342 (422)
T COG0738 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------------GG---VVALYALFLIGLFNS-IMF 342 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------------cC---hHHHHHHHHHHHHhH-HHH
Confidence 99999999999999999999999888887766555555444443 11 222222233333333 334
Q ss_pred cccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH-HHHHHHHH
Q 009833 406 PLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLF-FSGWVLIM 465 (524)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 465 (524)
|..+....+..| +. ....|...+..-+|+.+.|++.|++.|..+...... ....|.+.
T Consensus 343 PTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 343 PTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred HHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666677777778 32 333445566677899999999999999988554433 34444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=222.60 Aligned_cols=331 Identities=13% Similarity=0.120 Sum_probs=222.5
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-----hhHHH-HHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRLT-MLIAGIFFIA 123 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~l~~~ 123 (524)
..+|.+.+|+ |+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++
T Consensus 9 ~~~~~~~~~~-----------------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~ 69 (356)
T TIGR00901 9 NTLPYWLRSK-----------------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLS 69 (356)
T ss_pred hHHHHHHHHc-----------------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Confidence 4558888888 9999999999766 455554 89999999998 89886 5677778888
Q ss_pred HHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCC--
Q 009833 124 GVAFNVAA---QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS-- 198 (524)
Q Consensus 124 ~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~-- 198 (524)
..++.++. .+++.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++........
T Consensus 70 ~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~ 149 (356)
T TIGR00901 70 LLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN 149 (356)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 77777776 5677788888899999999999999999999999999999999999999999999998543332211
Q ss_pred ---CcchHHHHHhhHHHHHHHHHHhhc-ccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchh
Q 009833 199 ---QWGWRISLGLAGIPAALLTVGSLL-VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR 274 (524)
Q Consensus 199 ---~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (524)
.++||..|++.++..++..+..++ .||+++. +.+ + +++ .++.+.+++
T Consensus 150 ~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~-~---------------~~~----------~~~~~~~~~ 200 (356)
T TIGR00901 150 TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASV-P---------------KPL----------TQAVLKPIR 200 (356)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccc-c---------------hhH----------HHHHHHHHH
Confidence 223999999999877776655443 5664210 000 0 000 000112345
Q ss_pred hhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHH-HHHHHHHhhhhhhhcccCchhHHH
Q 009833 275 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITG-AVNVLSTLVSIYSVDKVGRRMLLL 353 (524)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~~~ 353 (524)
++++++..++... ..+..+...........+.|.++++.|++..+.+......+ +..+++.++++++.||+|+|+.+.
T Consensus 201 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~ 279 (356)
T TIGR00901 201 EFFQRKNMIQALL-LLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALL 279 (356)
T ss_pred HHHHhcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5555554333233 33333333444556677788888779999988888777665 577899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHH
Q 009833 354 EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433 (524)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 433 (524)
.+.++..+...++.+...... ..+ ......+......++...+.+ ...+....+..|.+|++.||+..|+.+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 280 LFGIVQALTNAGFVWLASNGH-HDG--ITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-ccc--cccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 777766665554433210000 000 000122222222222222222 2334556777899999999999999877653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=249.64 Aligned_cols=325 Identities=11% Similarity=-0.026 Sum_probs=222.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 80 NQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 80 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++++|+++|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 45579999999999999999999999999999999998877666555443 457899999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC------CCcchHHHHHhhHHHH-HHHHHHhhcccCChHH
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK------SQWGWRISLGLAGIPA-ALLTVGSLLVTDTPNS 229 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~------~~~~wr~~f~~~~~~~-~~~~~~~~~~~e~p~~ 229 (524)
+++.|++|+++|++++++...+..+|.++|++++.++.... ...+|++.+.+..+.. ++.+++.+++||+|+.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 99999999999999999999999999999999976554320 0123444444443333 3333445567877632
Q ss_pred HHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 009833 230 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 309 (524)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
...+.+.++ . ...+.....++.+++++. ++...+..+........+..+.|.
T Consensus 206 ~~~~~~~~~--------------~----------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1146)
T PRK08633 206 APEVFDKKK--------------Y----------LFPKLLWRNLKLLRSDRV----LWLAIIGLSYFWFISQLAQANFPA 257 (1146)
T ss_pred Ccccccccc--------------c----------ccHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 111000000 0 000001123444555554 333333333333333445556666
Q ss_pred HH-HhcCCCCc-chhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHH
Q 009833 310 LF-KTLGFGGS-ASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 387 (524)
Q Consensus 310 ~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (524)
++ +.+|++.. ..+++.+...++.+++.++.+++.||+++++.+.++.++++++.+++... . ..+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~ 323 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------------P--SLA 323 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------------h--hHH
Confidence 66 45899888 88999999999999999999999999999888877766666555544432 1 222
Q ss_pred HHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 388 LVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
..++..++++.+.+.. .+....++.+..|++.||+++|+.+.+..++..+++.+.+.+.
T Consensus 324 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333322 2334566678889999999999999999998877776665544
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=216.42 Aligned_cols=339 Identities=14% Similarity=0.075 Sum_probs=218.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH---hh-----hhHHHHHHHHHHHHhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV---AA-----QNLAMLIVGRILLGCGV 148 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~~ 148 (524)
|.+..+.|++.+.+.++..++++++|+++||+|||+.++.++...+++..... +. +.+..+++.|++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887776655443321 11 22345567789999998
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhc-ccCCh
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL-VTDTP 227 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 227 (524)
+...+....+..|.. ++++..++......++|.+++++++.... + .+||.+|++.+++.++..++.+. .||+|
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~---~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 114 SAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF---S-IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred ccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh---c-cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888888888777753 23456777888888999999999955433 2 58999999998888777665444 44443
Q ss_pred HHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 009833 228 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYA 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (524)
+. + +.++ ..+. +.++++..+.+++++++. ++...+..+.....+.....+.
T Consensus 188 ~~---~-~~~~-------~~~~--------------~~~~~~~~~~~~~l~~~~----~~~~~l~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SS---A-TVAN-------ALGA--------------NASAFSLKLALELFRQRK----FWMFVLYVVGVACVYDVFDQQF 238 (396)
T ss_pred hh---h-hhhc-------cccc--------------ccCCCCHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 0000 0000 000011123455666665 2222222222223333444455
Q ss_pred HHHHHhc----CCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchh
Q 009833 308 PVLFKTL----GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 383 (524)
Q Consensus 308 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (524)
+.++++. +.+....+...+...+...++.+..+++.||+++|+.+.++..+..+........ .
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~- 305 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------T- 305 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------C-
Confidence 6555542 4445566778888888888899999999999999999888777666655443321 1
Q ss_pred hHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 009833 384 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV-TVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWV 462 (524)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (524)
+.+.......+.+...... ......+..+..|++.++++.+. .+....+|+.+++.+.|.+.|..|+...+.+.++.
T Consensus 306 -~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 306 -TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred -ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 1222222222222222111 11223344566788888887766 56788999999999999999998876665555444
Q ss_pred HHH
Q 009833 463 LIM 465 (524)
Q Consensus 463 ~~~ 465 (524)
.+.
T Consensus 384 ~~i 386 (396)
T TIGR00882 384 VLL 386 (396)
T ss_pred HHH
Confidence 433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=211.28 Aligned_cols=379 Identities=15% Similarity=0.071 Sum_probs=266.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhh------hhh---------------------------ccccCCCC
Q 009833 26 IVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFP------VVY---------------------------RRTQQGDD 72 (524)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~------~~~---------------------------~~~~~~~~ 72 (524)
.+++..++.+.+.++...++..|+. |.+..|.-. ... ..+.++..
T Consensus 20 ~lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 97 (464)
T KOG3764|consen 20 PLILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE 97 (464)
T ss_pred ceEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence 3455555666677777777776443 777666521 000 00111223
Q ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 009833 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 73 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
+++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|++++..+++++++.++|++++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCC-cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHH
Q 009833 153 QAVPLFLSEIAPTRI-RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 231 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 231 (524)
++..++++|.+|+++ |++++|+...+.++|..+||+. ++.+.+..|.+.+|++.+++.++...+.+++-|..+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf---GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-- 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF---GGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-- 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc---ccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc--
Confidence 999999999998764 8999999999999999999999 6777777899999999999999988886665443110
Q ss_pred hcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 009833 232 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 311 (524)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (524)
+ +...++..+++++++.+. ++.................--++.++
T Consensus 253 ---~----------------------------~~~~~~~~~~~~Ll~dP~----I~~~agai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 253 ---D----------------------------PDSTEQGTPMWSLLMDPY----ILLIAGAITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred ---C----------------------------ccccccCccHHHHHhCch----HhhhhcchhhccchHHHhCcccHHHH
Confidence 0 001223456777777776 44333333322333333333344444
Q ss_pred -HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccC--chhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHH
Q 009833 312 -KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVL 388 (524)
Q Consensus 312 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (524)
++...+..+.|+.+....+...++..+.|.+.||++ |......+.+....+...+.+.. .....+.
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~-----------~~~~L~v 366 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT-----------SIAQLWV 366 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh-----------hHHHHhh
Confidence 446645558899999999999999999999999999 43333333333333333333221 1122333
Q ss_pred HHHHHHHHHhhhccccccccceeecccCCch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 009833 389 VVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 458 (524)
.....++.+........|....++ +.-..+ ..|..+++......++.+++|.+.|.+.+..|+......
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~i 438 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTI 438 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHH
Confidence 333333333333344444433332 333333 668899999999999999999999999999996644333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-26 Score=250.07 Aligned_cols=335 Identities=13% Similarity=0.020 Sum_probs=227.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 009833 81 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI---AGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 157 (524)
Q Consensus 81 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 157 (524)
...++..+++.+.++++++++|+++||+|||+++.. +.++..+..+.+...+++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997633 32333333334444589999999999999999999999999
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChh
Q 009833 158 FLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFE 237 (524)
Q Consensus 158 ~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 237 (524)
++.+++++++|++++++.+++.++|.++||++++++ ....+|++.|+..++..++.+++.+++|+++.. +...+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 205 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA---TISGNFVILVALLMGIAVLGWLASLFIPKTGNA---APDLK 205 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCe
Confidence 999999999999999999999999999999995544 445789999966666556555556667765420 00000
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCC
Q 009833 238 EGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGF 316 (524)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 316 (524)
. +.. ..++....++.+.+++. ++...+..+........+..+.|.++++ +|.
T Consensus 206 ~--------------~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 206 I--------------DRN---------IIRSTITLLKYAKADKR----IWLAILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred e--------------ccc---------hHHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 000 00001123445555555 4444444444444445666778888765 799
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhc--cCCCc----cchhhHHHHHH
Q 009833 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV--KDHSE----DLHTGFAVLVV 390 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~ 390 (524)
++...+.+.+..+++.+++.++.+++.++..+++.+..+.++..++.+.+.+...... ..... .......+...
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 9999999999999999999999999998877766655555544444433332100000 00000 00001222233
Q ss_pred HHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 391 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
+..++++.+.+.. .+...+++.+..|++.+|+++|+.+....++..+++.+.+.+.+.
T Consensus 339 ~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 339 IDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333332 233456668999999999999999999999999999999988753
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=218.39 Aligned_cols=346 Identities=16% Similarity=0.120 Sum_probs=245.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-----QNLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 151 (524)
.-|+..++++..+..+...+.+++.|.++||++||++++.+-++..+..++.++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998877665554432 47889999999999999999
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHH
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLI 231 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 231 (524)
.|+..+++.|..|+++...++++.+...++..++||.+++.+. ...|-.+.|.+.++..++..+.....+..++
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv---a~~G~~~~f~inalsfl~~i~~l~~~~~~~~--- 194 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV---AFFGAAAAFLINALSFLISILALLRWKPPPP--- 194 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccccc---
Confidence 9999999999999999999999999999999999999955433 3356778888887765555444433332210
Q ss_pred hcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 009833 232 ERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 311 (524)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (524)
.+...+ ++..+..+..++-+.+++..+..+. ..+........+...+|.+.
T Consensus 195 ~~~~~~-------------------------e~~~~~l~~G~ryv~~~~~l~~~l~----~~~~~~l~~~a~~aLlPl~a 245 (524)
T PF05977_consen 195 PSSLPR-------------------------ERFFSALREGLRYVRSSPPLRSVLL----RSFLFNLFASAVWALLPLFA 245 (524)
T ss_pred ccccch-------------------------hhhhhhHHHHHHHHhcchHHHHHHH----HHHHHHHhhhHHHHhhhHHH
Confidence 000000 0001111223333333443222222 12222222233445678777
Q ss_pred H-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHH
Q 009833 312 K-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVV 390 (524)
Q Consensus 312 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (524)
+ .+|.++...|++.+..+++.++|.++.+++.+|+++++++..+.+..+++.+.+++. +..+...
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--------------~~~~~~~ 311 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--------------PSFWLAL 311 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--------------hHHHHHH
Confidence 5 488899999999999999999999999999999999888887777766666555542 1233333
Q ss_pred HHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 391 IMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
..+++.+.+... ......+...+..|++.||++.+++++....+..+|..+.|.+.+..|....+..+++..+.+.++.
T Consensus 312 ~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 312 IALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 2233445567889999999999999999999999999999999999987766666655554444444
Q ss_pred Hh
Q 009833 471 FL 472 (524)
Q Consensus 471 ~~ 472 (524)
..
T Consensus 391 ~~ 392 (524)
T PF05977_consen 391 LR 392 (524)
T ss_pred HH
Confidence 33
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=190.01 Aligned_cols=355 Identities=15% Similarity=0.128 Sum_probs=266.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHh
Q 009833 26 IVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105 (524)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 105 (524)
+..+..+.+..+..--..+..+ +.++++.+++ |+|.+..|+++++..+...+.+++..+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvg--PLL~~Ir~~~-----------------gls~s~aGlLTtLPll~fg~~ap~a~~La 71 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVG--PLLDEIRQDL-----------------GLSFSVAGLLTTLPLLAFGLFAPAAPRLA 71 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhh--hhHHHHHHHh-----------------cccHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333333333333333334444 5568888888 99999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 009833 106 RRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185 (524)
Q Consensus 106 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 185 (524)
.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+...+..+.++-+.||++ -+..++++....++|..+
T Consensus 72 r~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaL 149 (395)
T COG2807 72 RRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAAL 149 (395)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999998887 8889999999999999999999999999999876 799999999999999999
Q ss_pred HHHHHhhcccCCCCc-chHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 009833 186 ANLVNYGTSHIKSQW-GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASR 264 (524)
Q Consensus 186 ~~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (524)
++.++. .+.++. |||....+-++++++.++.++. ...|. + ..
T Consensus 150 aa~lav---pla~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~-----~---------------------------~~ 192 (395)
T COG2807 150 AAALAV---PLAQHSGGWRGALGFWALLALLALLIWLP--QALRE-----Q---------------------------AA 192 (395)
T ss_pred Hhhhhh---HHHHhhccHHHHHHHHHHHHHHHHHHHhh--hcccc-----c---------------------------cc
Confidence 988843 333334 7999999999998888776543 21110 0 00
Q ss_pred HhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc
Q 009833 265 IAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD 344 (524)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (524)
..+.+..+-..++|++. -|.+.+.+..+...++....|+|.++.+.|+|+.++|.+.+...+.+++..+....+.+
T Consensus 193 ~~~~~~~~~~~vw~~~~----aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~ 268 (395)
T COG2807 193 SIATKLVSVRKVWRSPL----AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR 268 (395)
T ss_pred ccccccccccccccCch----hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01122233445677776 77778888888888999999999999999999999999999999999999999999999
Q ss_pred cc-CchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccC-Cchhhh
Q 009833 345 KV-GRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRS 422 (524)
Q Consensus 345 ~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 422 (524)
|. ++|+.......++.++.+.+.+. +....++. +++ .+.+.+. ..|+....+.... .++..+
T Consensus 269 R~~n~r~~~~~~~~~~l~G~~G~~~~------------P~~~~~lw-~~l--lG~G~G~-~F~laL~li~~rs~~a~~Aa 332 (395)
T COG2807 269 RSKNQRPLVVLALLLMLVGLVGLLLA------------PGQLPILW-ALL--LGLGQGG-AFPLALTLILLRSSDAAIAA 332 (395)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHh------------hhhHHHHH-HHH--HhCccch-HHHHHHHHHHhhcCChHHHH
Confidence 75 46666666666777777666543 22333333 122 2222111 1233333333433 345567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhch-hhHHHH
Q 009833 423 AGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFF 458 (524)
Q Consensus 423 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~-~~~~~~ 458 (524)
.-.|+.+.++++-..++|.++|.+.|..|. ...+..
T Consensus 333 ~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 333 ALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred HHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 778999999999999999999999999874 433333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=208.18 Aligned_cols=360 Identities=16% Similarity=0.154 Sum_probs=224.1
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV 129 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~ 129 (524)
..++.+..|+ |- .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++
T Consensus 65 ~~l~~I~~di-----------------G~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a 126 (599)
T PF06609_consen 65 SILPYINADI-----------------GG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA 126 (599)
T ss_pred HHHHHHHHhc-----------------CC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence 4457788887 43 36678999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhh
Q 009833 130 AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLA 209 (524)
Q Consensus 130 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~ 209 (524)
.++|...++.+..+.|+|.|... .....++|..|.|.|+...++...........++.++. .+..+.+|||.|++.
T Consensus 127 tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~---~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 127 TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ---LFAAHSGWRWIFYIF 202 (599)
T ss_pred cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH---HhccCCCcchHHHHH
Confidence 99999999999999999987766 45566899999999988777766655555555666632 333456899999999
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCC---hhHHHHHHHHHh------------------CCCCchH---H-HHHH-----
Q 009833 210 GIPAALLTVGSLLVTDTPNSLIERGR---FEEGKAVLRKIR------------------GTDKIEP---E-FLEL----- 259 (524)
Q Consensus 210 ~~~~~~~~~~~~~~~e~p~~~~~~~~---~~~~~~~~~~~~------------------~~~~~~~---~-~~~~----- 259 (524)
++...+.+++.++...+|++...+++ ..+..+.++.+. +....+. . ....
T Consensus 203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~ 282 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV 282 (599)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence 88877766553322222332222222 222233333331 1000000 0 0000
Q ss_pred --HH--HHHHhhhhccc--hhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCC---cchhHHHHHHH
Q 009833 260 --VE--ASRIAKEVKHP--FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGG---SASLYSTVITG 329 (524)
Q Consensus 260 --~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---~~~~~~~~~~~ 329 (524)
.. --+.....+++ -.+++++++ .+...++..+.....++....+.|.... -++-++ ...++.....+
T Consensus 283 ~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~ 359 (599)
T PF06609_consen 283 LLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVG 359 (599)
T ss_pred HHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHH
Confidence 00 00111111222 234555432 2444444444444445555555555443 355544 25677888888
Q ss_pred HHHHHHHhhhhhhhcccCchhHH-HHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccccc
Q 009833 330 AVNVLSTLVSIYSVDKVGRRMLL-LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 408 (524)
Q Consensus 330 ~~~~~~~~~~g~l~d~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
.+..++.++.+.+..+++|-|.. +++.+.+.+++.+++.... .+....+.+..+.. .+.+.... ..
T Consensus 360 fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~----------~n~~~~i~~~~l~g--~giG~~~~-~~ 426 (599)
T PF06609_consen 360 FGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP----------DNKNAAIAFLVLAG--FGIGGILV-PA 426 (599)
T ss_pred HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC----------CCcchHHHHHHHHH--HhHHHHHH-HH
Confidence 88889999999999888765554 4555555444444333210 11112222222222 22222222 22
Q ss_pred ceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 409 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 409 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
...+.-..|++.-+++.|+..+++.+|+.++..++..+.
T Consensus 427 ~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 427 IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333445678899999999999999999999888776544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=213.39 Aligned_cols=407 Identities=13% Similarity=0.091 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhH
Q 009833 23 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS 102 (524)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 102 (524)
.++|..+..........|...... ...|.+++++ |+|..+++++.++. ....+++++.|
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~fs---v~s~~L~~~l-----------------gls~~~l~~i~svg-~~~g~~~lp~G 82 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYAFN---LISGAMQARY-----------------NLTQRDLSTITTVG-IAVGYFLLPYS 82 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh-----------------CcCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445555544444444443333222 2337888888 99999999998874 34556788899
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHH
Q 009833 103 YTTRRLGRRLTMLIAGIFFIAGVAFNVAA------QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176 (524)
Q Consensus 103 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 176 (524)
++.||+|||+++.++.+++++++++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||++.|+..
T Consensus 83 ~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~ 161 (591)
T PTZ00207 83 FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMK 161 (591)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHH
Confidence 99999999999999999999999999997 689999999999999999999999999999997 67999999999
Q ss_pred HHHHHHHHH-HHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhc--ccCChHHHHhcCChhHHHHHHHHHhCCC--
Q 009833 177 LNVTIGILF-ANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLL--VTDTPNSLIERGRFEEGKAVLRKIRGTD-- 250 (524)
Q Consensus 177 ~~~~lG~~~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~-- 250 (524)
.+.++|.++ +++...+.. .+|+..|++.+++.++..++ .++ .|+.|++..++++.++.++..++.++..
T Consensus 162 ~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 236 (591)
T PTZ00207 162 TFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYL 236 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhh
Confidence 999999976 444433222 36888888888877776665 333 3444555434433333333322211100
Q ss_pred -----------------------------------------------------------------------CchHHHHHH
Q 009833 251 -----------------------------------------------------------------------KIEPEFLEL 259 (524)
Q Consensus 251 -----------------------------------------------------------------------~~~~~~~~~ 259 (524)
+.+.+..+.
T Consensus 237 ~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~ 316 (591)
T PTZ00207 237 KQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEH 316 (591)
T ss_pred hcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccc
Confidence 000000000
Q ss_pred HH-HH--HHhh--------h-----hccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhc-CCCCcc--
Q 009833 260 VE-AS--RIAK--------E-----VKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL-GFGGSA-- 320 (524)
Q Consensus 260 ~~-~~--~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-- 320 (524)
.+ .. ..++ + ...++.+.+++.. +|++.+.+++.......+.+.+.++.+.. |.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d----~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~ 392 (591)
T PTZ00207 317 VEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTAR----LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDAL 392 (591)
T ss_pred ccccccccccccccccccccCCCCCCcchHHHHHhchh----HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccc
Confidence 00 00 0000 0 0012333333333 78888888888777777788888888887 773333
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccCchh---------HHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHH
Q 009833 321 SLYSTVITGAVNVLSTLVSIYSVDKVGRRM---------LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVI 391 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (524)
...+.+..++++.+|++..|.+.....+|+ .+.+..+ +.++.+++.+.. +... ..+
T Consensus 393 ~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~-----------p~~~---L~~ 457 (591)
T PTZ00207 393 NTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL-----------PKAA---LPL 457 (591)
T ss_pred eeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC-----------CccH---hHH
Confidence 333678889999999999998772222221 1222222 333333333321 1111 222
Q ss_pred HHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhhhc-------------h-hhHH
Q 009833 392 MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI-AQAFLSMLCHFK-------------F-GIFL 456 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~g-------------~-~~~~ 456 (524)
..++.+.+++..+ ++....++|+|. ++-|+-+-+.....-+|+.+. ..++|.++|... + ..++
T Consensus 458 ~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~ 535 (591)
T PTZ00207 458 PYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLA 535 (591)
T ss_pred HHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHH
Confidence 2223333333332 344566689999 777877777666666776665 556777776532 1 2556
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 009833 457 FFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~ 477 (524)
+.++++.+..++...+..+++
T Consensus 536 v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 536 FLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHHhheeeehH
Confidence 666666665555444444444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=219.16 Aligned_cols=328 Identities=16% Similarity=0.150 Sum_probs=221.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILLG 145 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G 145 (524)
|+++.++|++.++..+..++..++.|+++|| +|| |+.++.+..+.+++.+++...++ ...+++.+++.+
T Consensus 31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (437)
T TIGR00792 31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG 110 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 787 45677888888888888876653 467778899999
Q ss_pred hhhhhhhhhhhhhhhccC-CCCCcchhHHHHHHHHHHHHHHHHHHHhhc-ccC---CCCcchHHHHHhhHHHHHHHHHH-
Q 009833 146 CGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYGT-SHI---KSQWGWRISLGLAGIPAALLTVG- 219 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~~~---~~~~~wr~~f~~~~~~~~~~~~~- 219 (524)
++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.... ..+ .+..+||+.+.+.+++.++..+.
T Consensus 111 ~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 111 LFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999888888888889987 468899999999988888877765543222 211 23568999999999888777665
Q ss_pred hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhh
Q 009833 220 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299 (524)
Q Consensus 220 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
.++.+|.++. +.++ ++.+.+.++.++++++++. ++...+..+.....
T Consensus 191 ~~~~~e~~~~-----~~~~------------------------~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~ 237 (437)
T TIGR00792 191 FFGTKERYSE-----IPKN------------------------IEKKLSLKQIFKALFKNDQ----LLILCLAYLFYNLA 237 (437)
T ss_pred HcCCEecCCC-----CCcc------------------------cccCCCHHHHHHHHhCCHH----HHHHHHHHHHHHHH
Confidence 4557775410 0000 0000001123444555554 33333333333333
Q ss_pred HHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009833 300 INAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 378 (524)
Q Consensus 300 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (524)
......+.+++.+. .+ +....+.+.....++.+++.++.+++.||+|+|+.+..+..+..++.+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------- 307 (437)
T TIGR00792 238 FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--------- 307 (437)
T ss_pred HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---------
Confidence 34444444555443 33 34556667777788999999999999999999999888877666655544331
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 379 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 451 (524)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 451 (524)
. ...+...+...+.+.+.+.. .+..+.+.+|..+ ++.+|...|+.+....++..+++.+.|.+.+..|
T Consensus 308 ---~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 308 ---G-SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred ---c-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 11222222222222222222 2344555566654 4567999999999999999999999999988766
Q ss_pred h
Q 009833 452 F 452 (524)
Q Consensus 452 ~ 452 (524)
+
T Consensus 383 ~ 383 (437)
T TIGR00792 383 Y 383 (437)
T ss_pred C
Confidence 4
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=198.74 Aligned_cols=342 Identities=13% Similarity=0.054 Sum_probs=218.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+..-.|.+.|.|.+.+.+.++.+|.++||+|||+++++|++..++...+.+.+.|+..++++|++.|+..| ...+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3566778999999999999999999999999999999999999999999999999999777777999999988 556788
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcc---hHHHHHhhHHHHHH-HHHHhhcccCChHHHHh
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG---WRISLGLAGIPAAL-LTVGSLLVTDTPNSLIE 232 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~---wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~ 232 (524)
++++|.+++|+|+++++.....+++|.++||.+++++....+..| .-.+-++..++... .....+++||+-+...+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 999999999999999999999999999999999777665221111 21222233333333 33446779998321111
Q ss_pred cCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhH---HHHHHHHHHHHHhhhHHHHHHhHHH
Q 009833 233 RGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQ---LVIAVALQIFQQCTGINAIMFYAPV 309 (524)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
+ ++. .+.++..++..+..+.+ ...-....+++.... ..-.+.+..+.+...+..+.++.+.
T Consensus 223 ~---~~~----------~~~~~~~~~~~~~~~~~---~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 223 N---DEH----------STLQEAADDRLALLKFA---RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred c---ccc----------cchhhhhhhhhhhcchh---hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 110 00000000000000000 000011122222211 1112233333333333344444444
Q ss_pred HH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccC--chhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHH
Q 009833 310 LF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 386 (524)
Q Consensus 310 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (524)
+. +.+|+++.+.|.+.+..++.+.+.+.......+|.+ .+-.+..+..++.-..+.+... . .+
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~--~~ 352 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------R--TP 352 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------c--cc
Confidence 43 448999999999999998888888877777777765 4444443333333322222221 1 11
Q ss_pred HHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 387 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
..+.+......+.+....+....+.....|.++||+..|+....+.++-++||.+.|.+..+.
T Consensus 353 -~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 353 -VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred -hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 222222222222333333455566678889999999999999999999999999998777654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=207.26 Aligned_cols=371 Identities=10% Similarity=-0.046 Sum_probs=237.7
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHH--HHHHHHHHHHHHHhh-HHHhh
Q 009833 30 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLF--TSSLYLAGLTATFFA-SYTTR 106 (524)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~-g~l~d 106 (524)
+.....++..|...+... ..+|.+.++. |.|.+++|++ .+...+...+.++++ ++..|
T Consensus 4 ~~~~~ly~~~g~~~~~~~--p~lp~~l~~~-----------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~ 64 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAM--DALPTLLRED-----------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW 64 (390)
T ss_pred HHHHHHHHHHHhHHHHHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334445677888877776 5568898888 9999999997 466788888888888 45799
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHH---hhhh-HHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHH
Q 009833 107 RLGRRLTMLIAGIFF-IAGVAFNV---AAQN-LAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI 181 (524)
Q Consensus 107 r~Grr~~l~~~~~l~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 181 (524)
|+||||..++.+.+. ++.....+ ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+
T Consensus 65 ~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~l 144 (390)
T TIGR02718 65 RLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMI 144 (390)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHH
Confidence 999998875555332 22222222 1222 334455566677788888888888889999888888888888888899
Q ss_pred HHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHH
Q 009833 182 GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVE 261 (524)
Q Consensus 182 G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
|.++|+.. ...+.+..|||..|++.+++.++..+..++++|+++. +++. +
T Consensus 145 G~~~g~~~---~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~-~----------------------- 194 (390)
T TIGR02718 145 GFFGGGAG---TLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA-P----------------------- 194 (390)
T ss_pred HHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc-c-----------------------
Confidence 99999877 4444456799999999998887766665555443210 0000 0
Q ss_pred HHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHH-HHHHHHhhhh
Q 009833 262 ASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGA-VNVLSTLVSI 340 (524)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g 340 (524)
++...++++.+|++..+. .....+...........+.+.++++.|+++++.+......+. ..+++.++.|
T Consensus 195 -----~~~~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g 265 (390)
T TIGR02718 195 -----LARRASLFRFFRRPLAWS----LLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGA 265 (390)
T ss_pred -----hhhHHHHHHHHcCcCHHH----HHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 000113455666665332 222223333333445556677777889999999998887764 6667788999
Q ss_pred hhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc-h
Q 009833 341 YSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-E 419 (524)
Q Consensus 341 ~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 419 (524)
++.||+++|+.+..+.....+..+......... .............+.....+... +.......+..++ +
T Consensus 266 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 336 (390)
T TIGR02718 266 WLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW--------LAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGD 336 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc--------cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCccc
Confidence 999999999988876655433322221111000 00111111111111111112221 2222333344554 7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 009833 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSC 467 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 467 (524)
.+++..++.+....++..++|.+.|.+.|..|+...+..+..+.+.++
T Consensus 337 ~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 337 QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888666666555544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=205.70 Aligned_cols=382 Identities=11% Similarity=0.034 Sum_probs=232.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|...+..
T Consensus 44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 123 (475)
T TIGR00924 44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP 123 (475)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCC---cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhccc----CChH
Q 009833 156 PLFLSEIAPTRI---RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVT----DTPN 228 (524)
Q Consensus 156 ~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p~ 228 (524)
.++++|++|+++ |++++++++.+.++|.++|++++ +.+.++.|||+.|.+.++..++..+..++.+ +.|+
T Consensus 124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~---g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA---GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH---HHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 999999998764 88899999999999999999994 4445567899999998765554444333322 2221
Q ss_pred HHHhcCChhHHHHHHH-------------H-HhCCCCchHHHHH-------HHHHHHHhhhhccchhhhcccCchhHHHH
Q 009833 229 SLIERGRFEEGKAVLR-------------K-IRGTDKIEPEFLE-------LVEASRIAKEVKHPFRNLLKRRNRPQLVI 287 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
.. .+.+.++...... . ....+........ .....+...+ ....+.-++ +.. .++
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~l 275 (475)
T TIGR00924 201 VP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK--PRLDAVARN-KMY-AYI 275 (475)
T ss_pred CC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHh-HHH-HHH
Confidence 00 0000010000000 0 0000000000000 0000000000 001111011 111 133
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCc----chhHHHHHHHHHHHHHHhhhhh----hhcc-cCchhHH--HHH
Q 009833 288 AVALQIFQQCTGINAIMFYAPVLFKT-LGFGGS----ASLYSTVITGAVNVLSTLVSIY----SVDK-VGRRMLL--LEA 355 (524)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~----l~d~-~~~r~~~--~~~ 355 (524)
.+++........+.......+.+.++ .+.+.. ..+.+.++..+..++..++..+ +.+| .+.+... .++
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 33333333334444444445555433 332211 2567777777777777766544 3443 2223333 556
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHH
Q 009833 356 GIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 435 (524)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 435 (524)
.++.++++..+.+..... +.. ...+.++ ++....+.........|....++.+..|++.||+.+|+......+|
T Consensus 356 ~~l~~~~~~~~~~~~~~~--~~~---~~~s~~~-~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g 429 (475)
T TIGR00924 356 MLFCGASFLTFAASIWFA--DAG---GLTSPWF-MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG 429 (475)
T ss_pred HHHHHHHHHHHHHHHhhc--CCC---CccCHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 666666666555432111 000 1122333 3333334444445556777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHh
Q 009833 436 TFVIAQAFLSMLCHFKFGIFL-FFSGWVLIMSCFVFFL 472 (524)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 472 (524)
..+++.+.....+..++...+ .......+.+++.++.
T Consensus 430 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 430 SLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999988888776665544333 3333333344444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=206.35 Aligned_cols=355 Identities=10% Similarity=0.021 Sum_probs=213.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAM-LIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~ 154 (524)
|++.++.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|+++|+|.|...+.
T Consensus 46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~ 125 (489)
T PRK10207 46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN 125 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence 9999999999999998888999999999999 99999999999999999999999876554 558899999999999999
Q ss_pred hhhhhhccCCCC--CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHh
Q 009833 155 VPLFLSEIAPTR--IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIE 232 (524)
Q Consensus 155 ~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 232 (524)
..+++.|++|++ +|++++++++.+.++|..+||.++. .+.++.|||+.|++.++..++..+.+.+.++..+....
T Consensus 126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g---~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T PRK10207 126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP---VIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGS 202 (489)
T ss_pred HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH---HHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCC
Confidence 999999999877 4578999999999999999999944 44556799999998765333333333333321110000
Q ss_pred c--CChhHHHHHH-------------HHHhCCCCchHHHHHHH----HHHH-HhhhhccchhhhcccCchhHHHHHH--H
Q 009833 233 R--GRFEEGKAVL-------------RKIRGTDKIEPEFLELV----EASR-IAKEVKHPFRNLLKRRNRPQLVIAV--A 290 (524)
Q Consensus 233 ~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 290 (524)
+ ++..+..... ........ ........ ...- ..++.+. .+.+|++. +... +
T Consensus 203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~f~~~~~~~--~~~~r~r~----~~~~~l~ 275 (489)
T PRK10207 203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE-VANLVLIVLSIVVTIIFFREAFKL--DKTGRNKM----FVAFVLM 275 (489)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHH----HHHHHHH
Confidence 0 0000100000 00000000 00000000 0000 0000011 12222222 2211 1
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHh-cCCCC----cchhHHHHHHHHHHHHHHhhhhhhhcccCchhH-------HHHHHHH
Q 009833 291 LQIFQQCTGINAIMFYAPVLFKT-LGFGG----SASLYSTVITGAVNVLSTLVSIYSVDKVGRRML-------LLEAGIQ 358 (524)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~-------~~~~~~~ 358 (524)
+........+....+..+.+.++ .+.+. .....+.....+..++..++.+++.||+++|+. +.++.++
T Consensus 276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l 355 (489)
T PRK10207 276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFL 355 (489)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 11222333333333445555543 22111 123344455556666777888899999998863 6666666
Q ss_pred HHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009833 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFV 438 (524)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i 438 (524)
.+++++.+..........+ .....++.+....+. +.......|....++.+..|++.++.++|+.+....+|+.+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~----~~~s~~~~i~~~~l~-g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l 430 (489)
T PRK10207 356 CSLGFLTAAAAGMWFADAQ----GLTSPWFIVLVYLFQ-SLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL 430 (489)
T ss_pred HHHHHHHHHHHHHhhcCCC----CccCHHHHHHHHHHH-HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666544432111111010 111223233232333 33333344565666778899999999999999999999998
Q ss_pred HHHHHHHH
Q 009833 439 IAQAFLSM 446 (524)
Q Consensus 439 ~~~~~~~~ 446 (524)
+..+....
T Consensus 431 g~~l~~~~ 438 (489)
T PRK10207 431 GGYVATFT 438 (489)
T ss_pred HHHHHHHh
Confidence 88777544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=192.61 Aligned_cols=354 Identities=11% Similarity=0.079 Sum_probs=204.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|++..+.+++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.++++|+++|++.|...+.
T Consensus 53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~ 132 (500)
T PRK09584 53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN 132 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999888877767777899999999 5999999999999999999998874 5667778899999999999999
Q ss_pred hhhhhhccCCCCC--cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh----cccCChH
Q 009833 155 VPLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL----LVTDTPN 228 (524)
Q Consensus 155 ~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~----~~~e~p~ 228 (524)
..+++.|++|+++ |..++++++.+.++|..+||.++ +.+.+++|||+.|++.++..++..+..+ .++|.++
T Consensus 133 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~---g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~ 209 (500)
T PRK09584 133 PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT---PWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGS 209 (500)
T ss_pred HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH---HHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCC
Confidence 9999999998654 45688999999999999999994 4455567999999998765444333222 2333210
Q ss_pred HHHhcCChhHHHHH-----------HHHHhCCCCchHHH-HHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHH
Q 009833 229 SLIERGRFEEGKAV-----------LRKIRGTDKIEPEF-LELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQ 296 (524)
Q Consensus 229 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
. ..+++.+..... .......+...... .............+... ..+...+++.+.. +..+. .
T Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~-~ 284 (500)
T PRK09584 210 K-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVA-FILML-E 284 (500)
T ss_pred C-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHH-HHHHH-H
Confidence 0 000001100000 00000000000000 00000000000000000 0011111222222 11111 1
Q ss_pred hhhHHHHHHhHHHHHHh---cCCCC------cchhHHHHHHHHHHHHHHhhh----hhhhcccCchhHHHHHHHHHHHHH
Q 009833 297 CTGINAIMFYAPVLFKT---LGFGG------SASLYSTVITGAVNVLSTLVS----IYSVDKVGRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 297 ~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~~~----g~l~d~~~~r~~~~~~~~~~~~~~ 363 (524)
...++......+..+.. .+.+. ...+.+.++..+..++..++. +++.+|.+..+.+.++.++.++++
T Consensus 285 ~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f 364 (500)
T PRK09584 285 AIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAF 364 (500)
T ss_pred HHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHH
Confidence 11122222333333221 11111 124556666666666665555 555556656677778888888887
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 443 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 443 (524)
+.+.........+ ..-+.+ ..+......+.......|....++.+..|++.||..+|+......++..++..+.
T Consensus 365 ~~l~~~~~~~~~~-----~~vs~~-~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 365 LVLPLGAKFANDA-----GIVSVN-WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHhcCCC-----CccCHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765542211000 011122 2333333344444555677777888999999999999988877777777766665
Q ss_pred H
Q 009833 444 L 444 (524)
Q Consensus 444 ~ 444 (524)
.
T Consensus 439 ~ 439 (500)
T PRK09584 439 N 439 (500)
T ss_pred H
Confidence 4
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=185.48 Aligned_cols=379 Identities=13% Similarity=0.094 Sum_probs=238.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhh----hhhhHHHHHHH-HHHHHHHHHHHHhhhhHH----------------
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGRRLTMLIA-GIFFIAGVAFNVAAQNLA---------------- 135 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~~-~~l~~~~~~~~~~~~~~~---------------- 135 (524)
|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.+++++++
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 999999999999999999999999999999 59999988774 666666667777766643
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCc--chhHHHHHHHHHHHHHHHHHHHhhcc------cCCC------Cc
Q 009833 136 -MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIR--GGLNILFQLNVTIGILFANLVNYGTS------HIKS------QW 200 (524)
Q Consensus 136 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~~------~~~~------~~ 200 (524)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++... .... -.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 233334445558888888899999999998865 57999999999999999999876431 1100 02
Q ss_pred chHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhccc
Q 009833 201 GWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKR 279 (524)
Q Consensus 201 ~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (524)
+.|..|++.++..++..++ .+..+|.|... .++.++ + +.++.+ +.+.+..++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~~~---------------~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAPPS---------------KHGEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hccccc---------------ccchhhhHHHHHHH
Confidence 6789999988877777666 56688875311 000000 0 000000 00001123333321
Q ss_pred -CchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh--cCCCCcc----------hhHHHHHHHHHHHHHHhhhhhhhccc
Q 009833 280 -RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSA----------SLYSTVITGAVNVLSTLVSIYSVDKV 346 (524)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (524)
+..++.++.+++..++.+.+.+.+..|.+.+..+ ++-++.. ..+.....++...+.+++..++.+|+
T Consensus 253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2234446667777777777777777777777643 4432211 12334445555567777788889999
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHHHhhhccC-C----Cccc-hhhH-HHHHHHHHHHHHhhhccccccccceeecccCCc
Q 009833 347 GR-RMLLLEAGIQMFLSQTVIAIILGIKVKD-H----SEDL-HTGF-AVLVVIMICTFISAFAWSWGPLGWLIPSETFPL 418 (524)
Q Consensus 347 ~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 418 (524)
|+ |+...++.++.++++....+......+. . .... .... .+..+..+...+... .....++++++++..|+
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASIRSSN 411 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHccc
Confidence 85 6666777777777776665443211000 0 0000 0001 133333333333333 33345778888888885
Q ss_pred --hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHH-HHHHHHHHHhcccCCC
Q 009833 419 --ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK--FGIFLFFSGWV-LIMSCFVFFLLPETKN 478 (524)
Q Consensus 419 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 478 (524)
+..|..+|+.|.+..+...+.....|.+.+..| ....+.++++. ++.+++..+.+|+++.
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 455999999999999999999988888666655 22344444444 4445556666776543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=183.46 Aligned_cols=329 Identities=15% Similarity=0.072 Sum_probs=228.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG-RRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.|..|+|++.+...+...++++++|.++||++ +|+++.+..++.++..+.....++++.+++.-++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 999999999999999999999999999999987 5788888888888877777888899999988888888888888888
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHH-HhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcC
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV-NYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 234 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 234 (524)
.++..+... +++.-.|-.....++|.+++... +.......+..+....+++.+...++.....+.+|+.|+. +
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~- 186 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---R- 186 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---c-
Confidence 888888775 34455555566666666666433 1111111121223345666666655555556667877621 0
Q ss_pred ChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhc
Q 009833 235 RFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTL 314 (524)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (524)
+.++ +.++....+..+++|+++ +..+.+..+...........+.+.++++.
T Consensus 187 ~~~~-------------------------~~~~~~~~~~~~llk~~~----~~~Fll~~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 187 SAKE-------------------------SVKKLLGLDALKLLKNPR----FLVFLLAAFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred ccCC-------------------------CcccccchHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 000111122345667766 44455555555555677778888889988
Q ss_pred C-CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHH--HHHH
Q 009833 315 G-FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV--LVVI 391 (524)
Q Consensus 315 g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 391 (524)
| .+....+...++..+..++.-...+++..|+|.|+++.++.+..++=..++.... ++... ....
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------~~~~~~~~~~~ 305 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------DPWPFIVALQL 305 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHH
Confidence 7 7777788888888889999999999999999999999988888777776666531 11111 1111
Q ss_pred H-HHHHHhhhccccccccceeecccCCchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhchh
Q 009833 392 M-ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV-NLLFTFVIAQAFLSMLCHFKFG 453 (524)
Q Consensus 392 ~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~~ 453 (524)
+ ..+-+..++... .....++.+..|++.|+++.++.+.. ..+|..++..+.|++.|+.+..
T Consensus 306 l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 306 LGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 1 122333333322 23456678999999999999998876 5789999999999999987743
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=193.88 Aligned_cols=335 Identities=15% Similarity=0.030 Sum_probs=209.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhh----hhhh-HHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGR-RLTMLIAGIFFIAGVAFNVAAQ------NLAMLIVGRILLG 145 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~l~~~~~~~~~~~~------~~~~l~~~r~l~G 145 (524)
|++..++|.+..+.-+..++..+++|.++| |+|| |+.++++.+..+++.+++...+ .+..+++..++.+
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~ 117 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG 117 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6698 6777788888888766664432 2445666777888
Q ss_pred hhhhhhhhhhhhhhhccC-CCCCcchhHHHHHHHHHHHHHHHHHHHhh-c---ccCCCCcchHHHHHhhHHHHHHHHHH-
Q 009833 146 CGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYG-T---SHIKSQWGWRISLGLAGIPAALLTVG- 219 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~---~~~~~~~~wr~~f~~~~~~~~~~~~~- 219 (524)
++.....+...++..|.. ++++|.+..++...+.++|..+.+.+... . +...+..+|+....+.+++.++..+.
T Consensus 118 ~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 118 MTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998 58899999998777777775555443221 1 11122346888877777776665554
Q ss_pred hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhh
Q 009833 220 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299 (524)
Q Consensus 220 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
.+..+|.+.. ...+. +++++.+.++.++.+++++. ++.+++..+.....
T Consensus 198 ~~~~~e~~~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~n~~----~~~ll~~~~~~~~~ 246 (473)
T PRK10429 198 LRNVHEVYSS----DNQVS-----------------------AEGSHLTLKDIVALIYKNDQ----LSCLLGMALAYNIA 246 (473)
T ss_pred HcCceecCCc----ccccc-----------------------ccccCCCHHHHHHHHhcCHH----HHHHHHHHHHHHHH
Confidence 3446664310 00000 00000011122333334433 33333333333334
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
......+.+++.+....+....+.+.....++.+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~------- 319 (473)
T PRK10429 247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA------- 319 (473)
T ss_pred HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 4444445555555433344555666666678888999999999999999999887776555544443322100
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 452 (524)
.....+..++...+.+.+.+.. .+..+.+.+|..+ .+..|...|.......++..+++.+.|.+.+..|+
T Consensus 320 --~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 320 --APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred --CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1112222222222222222222 2344556677744 33446688999999999999999999999887664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=177.54 Aligned_cols=396 Identities=12% Similarity=0.109 Sum_probs=272.4
Q ss_pred cccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHH
Q 009833 19 AKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTAT 98 (524)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~ 98 (524)
.|..++||.+++++++.++.++...--++++. .+.+.|+ + +....-|+..+|.+.+....
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Y----------------g-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFY----------------G-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHh----------------c-chHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999988877776443 4445542 6 77778899999999999999
Q ss_pred HhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh------hhHH--HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcch
Q 009833 99 FFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA------QNLA--MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 170 (524)
Q Consensus 99 ~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 170 (524)
+++-|+.||+|-|...+++..+.++|..+-..+ +.++ ....+..+.+.++-.....-..+..-|++++||..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 999999999999999999999999999987765 3455 77788999999988888777888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCC---CCcchHH--HHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHH
Q 009833 171 LNILFQLNVTIGILFANLVNYGTSHIK---SQWGWRI--SLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLR 244 (524)
Q Consensus 171 ~~~~~~~~~~lG~~~~~~~~~~~~~~~---~~~~wr~--~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~ 244 (524)
+..+-..+..+|.+++.++...+..-. ++..|.. .|+..+.++.+.+++ .+..++.|+.-...
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~----------- 245 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA----------- 245 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-----------
Confidence 999988888888888887754443322 3455665 355444444433333 23333332110000
Q ss_pred HHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHH
Q 009833 245 KIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYS 324 (524)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 324 (524)
. .....+.....+.++.++++. ++..++.+......++.....+...+...|++...+|..
T Consensus 246 ------------s---~~~~~~~~f~~si~~~~~n~~----F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~i 306 (480)
T KOG2563|consen 246 ------------S---QAALQDASFPKSIKSCFKNRQ----FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYI 306 (480)
T ss_pred ------------h---HhhhhcCcHHHHHHHHHcCcc----HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchh
Confidence 0 000001123445677777777 666666666665555665555554455577777889999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCchhH-HHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc
Q 009833 325 TVITGAVNVLSTLVSIYSVDKVGRRML-LLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
.....+++++++.+.|.+.||.++-+. ..+......++...+.... ......+++...+...+.+..+
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-----------~~~~~~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-----------LFLGDSVIVFTTCGLLGFFGTG 375 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-----------ccCCceEehhhhHHHHHHhhcC
Confidence 999999999999999999999875443 3333333333321111111 1112223444455556666777
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHHHHHHHHhccc
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK----FGIFLFFSGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ 475 (524)
..|+...+..|..-|..-++..|+.+..+++.+++-..+.+...+..+ +....+......+..+.+..+.++
T Consensus 376 ~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 376 YLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred CCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 788988888897766677888999999999999999999998888776 444444444444444444444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=173.93 Aligned_cols=356 Identities=13% Similarity=0.071 Sum_probs=224.0
Q ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhh
Q 009833 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNV---AAQNLAMLIVGRILLGCGV 148 (524)
Q Consensus 73 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 148 (524)
+.+.+++.++..++.+.|.+-..+.++++|++.|| +|-|..-++-+++..+|.++++ ..+.+|+++++|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 33448899999999999999999999999999996 7888777777777778887765 4689999999999999999
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHH----hhcccCCCCcchHH--HH-HhhHHHHHHHHHHhh
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN----YGTSHIKSQWGWRI--SL-GLAGIPAALLTVGSL 221 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~----~~~~~~~~~~~wr~--~f-~~~~~~~~~~~~~~~ 221 (524)
-...++-.+++.-|+..|+.+.++|+.....-+|..+-..+. -..+.+....|-.. .. .+....+...++...
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical 230 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL 230 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 989999999999999999999999999988888876554441 11111111111100 00 000000000000000
Q ss_pred cccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHH
Q 009833 222 LVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGIN 301 (524)
Q Consensus 222 ~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (524)
-+ .-.++.+++.+++.++... +.....+.. ...+-+|.+.+..++......
T Consensus 231 ~l---------g~~D~rAerilh~e~g~~G-----------------e~pkLtdv~---~f~ppfw~~~iicv~yyva~f 281 (459)
T KOG4686|consen 231 SL---------GLSDDRAERILHLEEGFLG-----------------EEPKLTDVN---TFYPPFWVLVIICVLYYVAWF 281 (459)
T ss_pred Hh---------hhhhhHHHHHHhhhcCccc-----------------CCccccccc---ccCccHHHHHHHHHHHHHHHH
Confidence 00 0011122222221111100 011111111 112225555555555555556
Q ss_pred HHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 302 AIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 302 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
.+....|.+++ ++|+|+..++.+.+.......+.+++.|.++||.|++...+.+..+..+..-....+
T Consensus 282 PFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----------- 350 (459)
T KOG4686|consen 282 PFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----------- 350 (459)
T ss_pred HHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-----------
Confidence 66667777665 599999999999998888999999999999999999987776655444433322222
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hh---hHH
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FG---IFL 456 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~---~~~ 456 (524)
...+++....++.+........ .|..++.+.|.++.|++.|..+.+.++|-.+.|.+.|.+.|+.| +. .++
T Consensus 351 -t~lsPy~~m~~lGLsysllAcs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 351 -TFLSPYTSMTFLGLSYSLLACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred -hhccHHHHHHHHhhhHHHHHHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 1223333333332222222222 34445677799999999999999999999999999999998876 32 344
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009833 457 FFSGWVLIMSCFVFFLL 473 (524)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (524)
+..+...+..+...+.+
T Consensus 426 l~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 44444444443333333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=191.23 Aligned_cols=327 Identities=13% Similarity=0.034 Sum_probs=206.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILLG 145 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G 145 (524)
|++..++|++.++..+..++..++.|+++|| +|| |+.++++.+..+++.++....++ ++.+++..++.+
T Consensus 41 gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~ 120 (444)
T PRK09669 41 GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLS 120 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 787 56677787888777766555432 456667777778
Q ss_pred hhhhhhhhhhhhhhhccC-CCCCcchhHHHHHHHHHHHHHHHHHHHhh-cccC---CCCcchHHHHHhhHHHHHHHHHH-
Q 009833 146 CGVGFANQAVPLFLSEIA-PTRIRGGLNILFQLNVTIGILFANLVNYG-TSHI---KSQWGWRISLGLAGIPAALLTVG- 219 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~~~~---~~~~~wr~~f~~~~~~~~~~~~~- 219 (524)
.+.........++.+|+. ++++|.+..++...+..+|..+++.+... ...+ .+..+|+..+.+.++++++..+.
T Consensus 121 ~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~ 200 (444)
T PRK09669 121 LVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC 200 (444)
T ss_pred HHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 777777777888999988 55789988888888888887777654321 2212 22458999888888877666555
Q ss_pred hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhh
Q 009833 220 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299 (524)
Q Consensus 220 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
.+..+|.++. + + +++.+.+..++++++++..+..+. ..+.....
T Consensus 201 ~~~~~e~~~~-----~--~-------------------------~~~~~~~~~~~~~~~n~~~~~l~~----~~~~~~~~ 244 (444)
T PRK09669 201 FFMTKERYTP-----E--V-------------------------DNSSSVWKDLKLLLGNSQWRIMFI----FNVVLLTA 244 (444)
T ss_pred hCCeEEecCC-----C--C-------------------------cCCCCHHHHHHHHhCCchHHHHHH----HHHHHHHH
Confidence 3334553210 0 0 000111233455666666443332 22222222
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
........+++.+..--+++..+.......+..+++.++.+++.||+|+|+....+.+...+....+...
T Consensus 245 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---------- 314 (444)
T PRK09669 245 VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---------- 314 (444)
T ss_pred HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----------
Confidence 2222223333333321122333444555567778888889999999999998887765544433322221
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 452 (524)
..+..+...+..++.+.+.+ ...+..+.+.+|..+ .+..|...|..+.+..+|..+++.+.|.+.+..|+
T Consensus 315 --~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 315 --PPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred --CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11222222333333333333 333566677777764 23346678888999999999999999999887765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=190.53 Aligned_cols=401 Identities=13% Similarity=-0.014 Sum_probs=239.2
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhh
Q 009833 30 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG 109 (524)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 109 (524)
.++...++..|.. .... ....|.+.+++ |++.++++.+.+...+...+-.+ +|.++||++
T Consensus 29 ~~~~~~y~~qGl~-~l~~-~~~~~~l~~~l-----------------g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~ 88 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMR-LPLSPMLTDDL-----------------GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFP 88 (468)
T ss_pred HHHHHHHHHhhHH-HHhh-hhhhHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 3333445667776 4433 12334555567 99999999999999999999666 999999998
Q ss_pred -----hHHHHHHHHHHHH-HHHHHHHhhhhHH-HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhH---HHHHHHH
Q 009833 110 -----RRLTMLIAGIFFI-AGVAFNVAAQNLA-MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLN---ILFQLNV 179 (524)
Q Consensus 110 -----rr~~l~~~~~l~~-~~~~~~~~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~ 179 (524)
||+.++++.++.+ ++....+..++.. ...+.+++.+++.+...+++.++..|..+ +++.... +......
T Consensus 89 i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~ 167 (468)
T TIGR00788 89 LFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGAS 167 (468)
T ss_pred CCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHH
Confidence 7888888877763 4433344445544 44448999999999999999999999998 5444433 3333344
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHH
Q 009833 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLEL 259 (524)
Q Consensus 180 ~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (524)
++|.++|+.+++ .+.+..+||..|++.+++.++..+..++++|++.....+.+.++ . .. ... ...
T Consensus 168 ~~G~~vg~~l~G---~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~--------~~--~~~-~~~ 232 (468)
T TIGR00788 168 ATGGLISSLLGG---PLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-E--------MN--MAL-LTL 232 (468)
T ss_pred HHHHHHHHHHHH---HHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-h--------hh--hhh-hhh
Confidence 578899888844 44455789999999888887776566778885310000000000 0 00 000 000
Q ss_pred HHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhh
Q 009833 260 VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVS 339 (524)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 339 (524)
...+..++.....++.++++..++.+...++.+. . ........+. ...+..|+++...|....+.+++.+++....
T Consensus 233 -~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~-~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~ 308 (468)
T TIGR00788 233 -GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-N-LPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGY 308 (468)
T ss_pred -hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-h-cCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 0000000101122233444332221221121011 1 1111111111 1123589999999999999999999999999
Q ss_pred hhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch
Q 009833 340 IYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE 419 (524)
Q Consensus 340 g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 419 (524)
+++.+|++.|+.+.++.++..++.+............. .....+.......+.....+....|. ..++.+..|++
T Consensus 309 ~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~----gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~ 383 (468)
T TIGR00788 309 DRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF----GISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSG 383 (468)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc----CCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCC
Confidence 99999999999988887777666544321110000000 00111122222222333333333344 45667999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHHHH---HHHHhccc
Q 009833 420 TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-----FGIFLFFSGWVLIMSC---FVFFLLPE 475 (524)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~---~~~~~~~~ 475 (524)
.+|+.+++.+.+.++|..+++.+.+.+.+..| +...+....++.+..+ ....++|+
T Consensus 384 ~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 384 CESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999998877 5544444443333322 23335565
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-18 Score=168.27 Aligned_cols=364 Identities=15% Similarity=0.116 Sum_probs=239.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHH-HHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhhhhh
Q 009833 81 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTM-LIAGIFFIAGVAFNVAA--QNLAMLIVGRILLGCGVGFANQAVPL 157 (524)
Q Consensus 81 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l-~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~ 157 (524)
+..++..++..+..++..++.|.++|+-|+||.+ .+...+..+++++..+. .+++...+.-++.-++.+...+...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999976554 55555566666666663 44556666677777788888889999
Q ss_pred hhhccCCCCCc--------------------------chhHHHHHHHHHHHHHHHHHHHhhcccCCC-----CcchHHHH
Q 009833 158 FLSEIAPTRIR--------------------------GGLNILFQLNVTIGILFANLVNYGTSHIKS-----QWGWRISL 206 (524)
Q Consensus 158 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~-----~~~wr~~f 206 (524)
++.|..+++++ ++..+.-.+...+|.++.-++........+ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 888888888888888877766444322211 23468888
Q ss_pred HhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHH
Q 009833 207 GLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQL 285 (524)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (524)
.+.++.-++..+. .+++||.|+. ++.+.. ... ....-++....++++.+.+.
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~---~~~~~~-~~~-------------------~~~g~~~l~~t~k~~~~~~~---- 282 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP---RPLPSG-SSY-------------------LRFGFKRLWRTFKEIRKLRQ---- 282 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC---CCCCcc-hhH-------------------HHHHHHHHHHHHHHHHhChH----
Confidence 8888876665555 6668887631 000000 000 00000111222333333332
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch--hHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR--MLLLEAGIQMFLS 362 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--~~~~~~~~~~~~~ 362 (524)
+..+++.+++..-+...+......+.. .+|++..+...+.....+.+++|.++.+++.||+|.| +++..+.....+.
T Consensus 283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 555666767666777777777777775 6999999999999999999999999999999999988 6666555444222
Q ss_pred HHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 363 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
.+...+... .. .. ...+... ..++.. ..+.+.....+..-++.+|+.|+++.+...|+....+...++++|.+
T Consensus 363 ~~~g~~G~~-~~-~~--g~~~~~~--f~~~a~-~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 363 PLYGLFGFW-PS-FF--GLKSPWE--FWVLAV-LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred HHHHHHHhh-hc-cc--CcccHHH--HHHHHH-HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 222111000 00 00 0022222 222222 22222333445667777899999999999999999999999999999
Q ss_pred HHHHHhhhc-hhhHHHHHHHHHHHHHHHHHhcccCCC
Q 009833 443 FLSMLCHFK-FGIFLFFSGWVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 443 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (524)
++.+.+..+ .+..+....+.++.+++++..++.+++
T Consensus 436 ~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 436 FGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 999999987 444455555555555555566555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=176.79 Aligned_cols=328 Identities=15% Similarity=0.134 Sum_probs=233.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhh----hhhhHH-HHHHHHHHHHHHHHHHHhh-h-------hHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTR----RLGRRL-TMLIAGIFFIAGVAFNVAA-Q-------NLAMLIVGRIL 143 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~-~l~~~~~l~~~~~~~~~~~-~-------~~~~l~~~r~l 143 (524)
|+++..+|++..+..+-.++..|+.|.++| |+|||| .++++.++.+++.+++... + ....+.+.-++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999 899765 5667888888888877765 4 23456777888
Q ss_pred HHhhhhhhhhhhhhhhhccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhc-ccCCCC---cchHHHHHhhHHHHHHHHH
Q 009833 144 LGCGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGT-SHIKSQ---WGWRISLGLAGIPAALLTV 218 (524)
Q Consensus 144 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~---~~wr~~f~~~~~~~~~~~~ 218 (524)
..++.........++..|..+ +++|.+..+.-..+..+|.++...+.... ....+. .+|++..++.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999997 56899999999998888886555553322 222221 2799999998888887776
Q ss_pred H-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHh
Q 009833 219 G-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQC 297 (524)
Q Consensus 219 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (524)
+ .+..+|.++ +. ++++++.+.+..++++++++..+. ..+..++..
T Consensus 193 i~~~~~ke~~~------~~------------------------~~~~~~~~~~~~~~~~~~nr~~~~----l~~~~~~~~ 238 (428)
T PF13347_consen 193 ITFFFVKERSV------EV------------------------TEQEKKISLRDSLRSLFRNRPFRI----LLLAFFLQW 238 (428)
T ss_pred hhhheeeeccc------cc------------------------cccccccccccchhhhcccchHHH----HHHHHHHHH
Confidence 6 455676210 00 001111222445666777766433 333444444
Q ss_pred hhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 009833 298 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376 (524)
Q Consensus 298 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (524)
..........+++.+. .|.+ ...+.......++.+++.++.++++||+|+|+....+..+.+++.+.+.+.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------- 310 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL------- 310 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH-------
Confidence 4444455556666665 4444 556677778888999999999999999999999999988888877776654
Q ss_pred CCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-------ETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
...+.+..++...+.+.+.+.. ....+.+.+|..+. +..|...|+.+....++..+++.+.+.+.+.
T Consensus 311 -----~~~~~~~~~i~~~l~gi~~~~~-~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 311 -----GPGSPWLVLILFILAGIGYGAF-FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred -----HhhhHHHHHHHHHHhHhhhccc-ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2123444444444444444433 35667777888763 3458889999999999999999999988877
Q ss_pred hch
Q 009833 450 FKF 452 (524)
Q Consensus 450 ~g~ 452 (524)
.|+
T Consensus 385 ~Gy 387 (428)
T PF13347_consen 385 VGY 387 (428)
T ss_pred hCc
Confidence 654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=177.14 Aligned_cols=325 Identities=9% Similarity=0.011 Sum_probs=196.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh----hhHHH-HHHHHHHHHHHHHHHHhh-----h--hHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRL----GRRLT-MLIAGIFFIAGVAFNVAA-----Q--NLAMLIVGRILL 144 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~-l~~~~~l~~~~~~~~~~~-----~--~~~~l~~~r~l~ 144 (524)
|++..++|++.+...+..++..+++|+++||. ||||. +.++.+...+..++.... + ..+.+++.-++.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL 119 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 77764 456666555544443211 1 233445566778
Q ss_pred HhhhhhhhhhhhhhhhccCCC-CCcchhHHHHHHH-----HHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHH
Q 009833 145 GCGVGFANQAVPLFLSEIAPT-RIRGGLNILFQLN-----VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 218 (524)
Q Consensus 145 G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 218 (524)
+++.+...+...++..+..++ ++|.+..+.-..+ ..+|..++|.++...+.... .+|.....+.++++++..+
T Consensus 120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHHHHHHH
Confidence 888888888777877776644 6788876666543 33555666666443221100 1222222233333333322
Q ss_pred H-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHh
Q 009833 219 G-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQC 297 (524)
Q Consensus 219 ~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (524)
. ....+|+++. ++ ++...+..++++++++. +....+..++..
T Consensus 199 ~~~~~~~e~~~~----~~-----------------------------~~~~~~~~~~~l~~n~~----f~~~~~~~~~~~ 241 (448)
T PRK09848 199 ICFKSTRENVVR----IV-----------------------------AQPSLKISLQTLKRNRP----LFMLCIGALCVL 241 (448)
T ss_pred HHHcCcEeccCC----Cc-----------------------------cCCCHHHHHHHHhCCch----HHHHHHHHHHHH
Confidence 2 3335554310 00 00011223556666666 444444444444
Q ss_pred hhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 009833 298 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376 (524)
Q Consensus 298 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (524)
..........|+++++ +|.+....++......++.+++.++.+++.||+++|+.+..+.++..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 4445555566666654 66655544444444456678889999999999999999998887776665554431
Q ss_pred CCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE-------TRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
.....+.......+...+.+.. .+....+..|..+.+ .+|...|+.+....+|..+++.+.+.+.+.
T Consensus 315 -----~~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 315 -----SVWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred -----CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222333332222 234455556666543 458889999999999999999999988876
Q ss_pred hch
Q 009833 450 FKF 452 (524)
Q Consensus 450 ~g~ 452 (524)
.|+
T Consensus 389 ~G~ 391 (448)
T PRK09848 389 SGY 391 (448)
T ss_pred cCC
Confidence 554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=171.88 Aligned_cols=326 Identities=9% Similarity=-0.016 Sum_probs=199.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh----hhhH-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGRR-LTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILLG 145 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G 145 (524)
|+++..+|++..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ ...+++.-++..
T Consensus 41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~ 120 (460)
T PRK11462 41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT 120 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 7975 5666777888888777655442 445666777788
Q ss_pred hhhhhhhhhhhhhhhccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhc-ccC---CCCcchHHHHHhhHHHHHHHHHHh
Q 009833 146 CGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGT-SHI---KSQWGWRISLGLAGIPAALLTVGS 220 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~~~---~~~~~wr~~f~~~~~~~~~~~~~~ 220 (524)
++.......-.++..|..+ ++||.+..++...+..+|..+++.+.... ... .+..+|+....+.+++.+++.++.
T Consensus 121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999986 67899999999999998887776653221 111 112478888877777766655543
Q ss_pred -hcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhh
Q 009833 221 -LLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTG 299 (524)
Q Consensus 221 -~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
...+|.++. + + ++...+..++..++++.++..... .+.....
T Consensus 201 ~~~~kE~~~~-----~--~--------------------------~~~~~~~~l~~~~~Nk~~~~l~~~----~~~~~~~ 243 (460)
T PRK11462 201 FFTTKERVEA-----P--P--------------------------TTTSMREDLRDIWQNDQWRIVGLL----TIFNILA 243 (460)
T ss_pred HhcceeccCC-----C--c--------------------------cCCCHHHHHHHHhCChHHHHHHHH----HHHHHHH
Confidence 334543210 0 0 000012234455555554333222 2222222
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
.........++.+...-++...+.+.....++.+++.++++++.||+++|+....+.....+..+++.+.
T Consensus 244 ~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---------- 313 (460)
T PRK11462 244 VCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---------- 313 (460)
T ss_pred HHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----------
Confidence 2222222333333322223334456667778888999999999999999988765444333323222211
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 452 (524)
+...........++.+.+. ....++.+.+.+|... .+..|...+.......++..+++.+.|.+.+..|+
T Consensus 314 --~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 314 --PMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred --chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1111111222222222222 2223344555556544 22335556777788899999999999988876554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-18 Score=165.78 Aligned_cols=360 Identities=11% Similarity=0.090 Sum_probs=202.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++... +...+.++..+.++|.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999 999999999999999988776543 2233444555555667777787
Q ss_pred hhhhhhccCCCC--CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHH-H
Q 009833 155 VPLFLSEIAPTR--IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL-I 231 (524)
Q Consensus 155 ~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~-~ 231 (524)
..++++|.+|++ +|..++++.+.+.++|..++|.+ .+.+.+.+|||+.|.+.++..++..+..++..+..... .
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l---~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA---CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH---HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 889999999875 69999999999999999999999 55555567999999987664444333322211110000 0
Q ss_pred hcCChhHHHHHHHHHh-------------CCCCc-hHHHHHHHHHHHHhh-h-hccchhhhcccCchhHHH--HHHHHHH
Q 009833 232 ERGRFEEGKAVLRKIR-------------GTDKI-EPEFLELVEASRIAK-E-VKHPFRNLLKRRNRPQLV--IAVALQI 293 (524)
Q Consensus 232 ~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~--~~~~~~~ 293 (524)
.+++..+.++...... ..... +.............. . --.-.+...++..++|.. +.+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~ 277 (493)
T PRK15462 198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFS 277 (493)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHH
Confidence 0000000000000000 00000 000000000000000 0 000000001111122222 1122222
Q ss_pred HHHhhhHHHHHHhHHHHHHh------cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCc--h-----hHHHHHHHHHH
Q 009833 294 FQQCTGINAIMFYAPVLFKT------LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGR--R-----MLLLEAGIQMF 360 (524)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--r-----~~~~~~~~~~~ 360 (524)
...+..+.....-+..+.++ .|++ -...+..++..+..++..++..++-.|..| | .-..++.++++
T Consensus 278 ~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g 356 (493)
T PRK15462 278 MLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMS 356 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 22222222222223333333 2322 235566777777777777766666455422 2 12566667777
Q ss_pred HHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHH-HHHHHHH
Q 009833 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN-LLFTFVI 439 (524)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~i~ 439 (524)
++++.+.+...... ++ .. ....+++...++.........|+....++++.|++.+|..+|+..... .++..++
T Consensus 357 ~~f~~l~~~~~~~~-~~----~~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~ 430 (493)
T PRK15462 357 AGFCILTLSARWSA-MY----GH-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA 430 (493)
T ss_pred HHHHHHHHHHhhcC-CC----CC-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666654332111 00 11 222334444455566677778999999999999999999999986643 5666666
Q ss_pred HHHHHHH
Q 009833 440 AQAFLSM 446 (524)
Q Consensus 440 ~~~~~~~ 446 (524)
..+.+..
T Consensus 431 g~~~~~~ 437 (493)
T PRK15462 431 GVIADQT 437 (493)
T ss_pred HHHHHHh
Confidence 6555544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-18 Score=161.39 Aligned_cols=332 Identities=15% Similarity=0.123 Sum_probs=234.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh----hhh-HHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 009833 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGR-RLTMLIAGIFFIAGVAFNVAAQN------LAMLIVGRILL 144 (524)
Q Consensus 76 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~ 144 (524)
+|+++..+|.+..+.-+--++.-|+.|.+.|| +|| |+.++++.+..++.+.++..+++ ....++.-.+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 39999999999999999999999999999995 886 56778888999999998888763 45677788999
Q ss_pred HhhhhhhhhhhhhhhhccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhh-cccCC---CCcchHHHHHhhHHHHHHHHHH
Q 009833 145 GCGVGFANQAVPLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYG-TSHIK---SQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 145 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~-~~~~~---~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
+++.......-.++..|..+ ++||.+..+.-+.+.++|..+...+... ..... ...||+....+.++++++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885 6789999999999999986655544321 22222 2468999988888888877776
Q ss_pred hhc-ccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhh
Q 009833 220 SLL-VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298 (524)
Q Consensus 220 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (524)
.++ .+|.+.. .... +...+.+.+..+..+++++. +...++..++...
T Consensus 203 ~~~~v~ER~~~---~~~~-------------------------~~~~~~~~~~~~~~~~~Nrp----~~~~l~~~l~~~~ 250 (467)
T COG2211 203 CFFNVKERVVE---TQPT-------------------------KTGVKLKLKDSFLLIFKNRP----LLLLLLMNLLLFI 250 (467)
T ss_pred HHHHhhcccCc---cccC-------------------------cccccccHHHHHHHHHccch----HHHHHHHHHHHHH
Confidence 444 6665420 0000 00001111223345566666 3344444555555
Q ss_pred hHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 009833 299 GINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 377 (524)
Q Consensus 299 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (524)
..........++.+. .|.+.............+.+++.++..++.+|+|+|++..++.++..++.+.+.+.
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~-------- 322 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-------- 322 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--------
Confidence 555555555555554 66666677777777777888889999999999999999999988888777776654
Q ss_pred CccchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 378 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-------LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
+.++..+.++..++...+.+ ...++.+++++|... .+..|...|...++.-+|..++..+.|+..+..
T Consensus 323 ----~~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 323 ----PAGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred ----cCcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 32233333333333333333 345678888888753 234477889999999999999999999999877
Q ss_pred ch
Q 009833 451 KF 452 (524)
Q Consensus 451 g~ 452 (524)
|+
T Consensus 398 Gy 399 (467)
T COG2211 398 GY 399 (467)
T ss_pred CC
Confidence 64
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=159.00 Aligned_cols=277 Identities=12% Similarity=0.047 Sum_probs=189.1
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC--C--------
Q 009833 129 VAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK--S-------- 198 (524)
Q Consensus 129 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~--~-------- 198 (524)
+...+|+.++++-++.|.|.+...+....++++..+++++.+.+++.+..+++|..++|.++....... +
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999966443211 0
Q ss_pred ---CcchHHHHHhhHHHHHHHHHHhhc--ccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccch
Q 009833 199 ---QWGWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF 273 (524)
Q Consensus 199 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
...|+++|++.+.+.++..+++.+ +||..+ ++++ + .. .++....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~---------------~-------~~---~~~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA---------------R-------VS---SGDTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc---------------c-------cc---cccccch
Confidence 147999999777665555555433 454310 0000 0 00 0000001
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh---cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchh
Q 009833 274 RNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT---LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRM 350 (524)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~ 350 (524)
++.++++ .++...+..+++.........|.+.|+++ +|+++.+.+...+....+.++|+++++++.||+++|+
T Consensus 134 ~~~~~~~----~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQFT----HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 1222222 25556667777776778888899998864 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHH
Q 009833 351 LLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 430 (524)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (524)
.+..+..+..++.++.... +.... .....+.+.+.+ ...|.......+..|++ .+++.++. .
T Consensus 210 ~l~~~~~l~~~~~~l~~~~------------~~~~~---~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT------------HGYVA---MWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc------------CCHHH---HHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence 8877766655554333221 11111 112222232222 23345455555666654 45666664 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 009833 431 VNLLFTFVIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 431 ~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 458 (524)
.+.+|+.+.|.+.|.+.|..+....+.+
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 7789999999999999998876554443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=163.01 Aligned_cols=349 Identities=18% Similarity=0.150 Sum_probs=209.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHH--HHHHHHHH-Hhh----hhHH-HHHHHHHHHHhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF--FIAGVAFN-VAA----QNLA-MLIVGRILLGCGV 148 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l--~~~~~~~~-~~~----~~~~-~l~~~r~l~G~~~ 148 (524)
|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+ ...+.+.. .+. .|++ ..+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999966544433322 22232222 222 2322 3334444455555
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc-cCCh
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-TDTP 227 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p 227 (524)
.+..|+..+++.++. ++.+.-.|-.....++|.+++..+++.+-. .+-+..|++....+++..++.++. |+.+
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 556666666666554 223455666667777777777777443332 345677887776666555554433 3332
Q ss_pred HHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccch---hhhcccCchhHHHHHHHHHHHHHhhhHHHHH
Q 009833 228 NSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPF---RNLLKRRNRPQLVIAVALQIFQQCTGINAIM 304 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
+.....+.. ..++++.+. .+++|.++ +|.+.+........+..+.
T Consensus 193 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~k~~~----fw~~~l~v~g~~~~Y~vfd 240 (412)
T PF01306_consen 193 PQAEVADAL----------------------------GAKKDKVSLKDVLSLFKMRN----FWFFVLFVIGVAAIYDVFD 240 (412)
T ss_dssp SSS-SSTTS----------------------------SS------HHHHHHHTTSHH----HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccc----------------------------ccCCCCCcHHHHHHHhcchh----HHHHHHHHHHHHHHHHHHH
Confidence 110000000 001111223 34455554 4444444444444455555
Q ss_pred HhHHHHHHhc----CCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 305 FYAPVLFKTL----GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 305 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
...+.+...+ +.+....|.+.+...+..++...+..++.+|+|.|+.++++..++.+=....++.
T Consensus 241 qqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~----------- 309 (412)
T PF01306_consen 241 QQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA----------- 309 (412)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------
Confidence 4455555443 2334557888888888999999999999999999999999988888887776653
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhhchh-hHHHH
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT-VCVNLLFTFVIAQAFLSMLCHFKFG-IFLFF 458 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~-~~~~~ 458 (524)
+.++.+...-.+-+..+.....+ ..-|+++.+|++..++...+. +...+++..+.+.+.|.+.|+.|+. .++++
T Consensus 310 ---~~~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylim 385 (412)
T PF01306_consen 310 ---TNPWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIM 385 (412)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHH
Confidence 13333444444444443333322 245668999999989988885 5778899999999999999999965 56666
Q ss_pred HHHHHHHHHHHHHhcccCCC
Q 009833 459 SGWVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (524)
+.+.+...++..+.+++.++
T Consensus 386 g~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHheeeecCCCc
Confidence 66666666666666655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=151.75 Aligned_cols=354 Identities=12% Similarity=0.046 Sum_probs=238.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhH-HHHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHHHhhhhhhhhh
Q 009833 79 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR-LTMLIAGIFFIAGVAFNVAAQN--L-AMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 79 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr-~~l~~~~~l~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~ 154 (524)
+.+..+...++..+-.++.+++.|.++|+.|+| +.+-....+..++.++..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 345678888899999999999999999999965 5556666667777777777655 4 45556688899999999999
Q ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC---------------CCcchHHHHHhhHHHHHHHHHH
Q 009833 155 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK---------------SQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 155 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~---------------~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
-.+++.+..++++-++..++-.....+|.++.-+......... +...=|..+.+.++.-++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 9999999999988888777666666666655554422111111 3345677788777766666554
Q ss_pred -hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhh
Q 009833 220 -SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCT 298 (524)
Q Consensus 220 -~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (524)
++..++.++- +.... +.....-++.+.+++++.+.+. +..+++..+...-
T Consensus 216 m~~~v~~~~~~---~~~~~----------------------~~l~~g~k~L~~t~k~i~~~~~----i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKI---SSPPP----------------------TALRNGFKELKSTFKEIRGRKN----LVLFLIARFFYID 266 (438)
T ss_pred HHhcccccccc---cccch----------------------HHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHh
Confidence 4556655420 00000 0001111223445566665554 5555566666666
Q ss_pred hHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 009833 299 GINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 377 (524)
Q Consensus 299 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (524)
+.++.......+-. ++|++..+...+.....+..++|+++.|++.||+|.|+++..+.+...+..+.....
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 66777777777776 799999999999999999999999999999999999988887776665555444332
Q ss_pred CccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchh-hHH
Q 009833 378 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG-IFL 456 (524)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~-~~~ 456 (524)
......+...+ ..+.+..+.....-.+..+..|+++.+...|+++..+...++.+|.+.+.+.+..+.. .-+
T Consensus 339 ----~~~~~f~i~gl---l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 339 ----EGELDFWILGL---LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred ----cccHHHHHHHH---HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 22222222211 1112222233456677789999999999999999999999999999999999888743 333
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 009833 457 FFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~ 476 (524)
....+....+.+.+...|..
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 33333344444444555544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-17 Score=160.28 Aligned_cols=309 Identities=14% Similarity=0.140 Sum_probs=221.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhh
Q 009833 27 VSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR 106 (524)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d 106 (524)
..+.+.++..+..+...+.+. ..+..+.+.| +++.++.|++.+.+=++..+...+..+..-
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~--s~IttiErRF-----------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~ 157 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFN--SVITTIERRF-----------------KISSSQSGLIASSYDIGNLLLIIFVSYFGS 157 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhh--hhhhhhhhhc-----------------CCCCCcceeEeeecccchhhhhHhHHHhcc
Confidence 334444444555555555554 3345677777 999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh--------------------h---------------------------h----HH
Q 009833 107 RLGRRLTMLIAGIFFIAGVAFNVAA--------------------Q---------------------------N----LA 135 (524)
Q Consensus 107 r~Grr~~l~~~~~l~~~~~~~~~~~--------------------~---------------------------~----~~ 135 (524)
|.-|-+.+-+|+++++++++++++- + . ++
T Consensus 158 r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (735)
T KOG3626|consen 158 RGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPF 237 (735)
T ss_pred ccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhH
Confidence 9999999999999999999998862 0 0 23
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCc--------------
Q 009833 136 -MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW-------------- 200 (524)
Q Consensus 136 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~-------------- 200 (524)
.++++.++.|+|....++...+|+-|...+++-...+|+......+|.++|.+++.+...+...+
T Consensus 238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW 317 (735)
T KOG3626|consen 238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW 317 (735)
T ss_pred HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence 66778999999999999999999999999999999999999999999999999987765543222
Q ss_pred --chHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcc
Q 009833 201 --GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLK 278 (524)
Q Consensus 201 --~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (524)
.|..-|++.+.+.++..+.++++|...+...++ .++ +..+..+.+++ ..++.....+.-++.....+++++
T Consensus 318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~-~~~~~~k~~~~---~~~~~~~~~~~ikdfp~s~~~ll~ 390 (735)
T KOG3626|consen 318 IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRA-RDLHVLKTESG---GAKSDKTFGKKIKDFPKSIKRLLS 390 (735)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chh-hhhcccccccc---cccCCcchhhhHHHHHHHHHHHhc
Confidence 377888888888888888888888764211110 000 00000000000 000000001111222345666677
Q ss_pred cCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH-HHHHHHhhhhhhhcccC--chhHHHH
Q 009833 279 RRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVG--RRMLLLE 354 (524)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~ 354 (524)
++. +....+...+....+..+..|+|.|+|. +|.++..+..+....++ +..+|.+++|++..|+. .|....+
T Consensus 391 N~i----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~ 466 (735)
T KOG3626|consen 391 NPI----FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF 466 (735)
T ss_pred Cch----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence 766 8888888888999999999999999975 99999988888765555 55677888999999875 4555555
Q ss_pred HHHHHHHHHHH
Q 009833 355 AGIQMFLSQTV 365 (524)
Q Consensus 355 ~~~~~~~~~~~ 365 (524)
..+...+.++.
T Consensus 467 ~~~~~~l~l~~ 477 (735)
T KOG3626|consen 467 VIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=155.69 Aligned_cols=410 Identities=15% Similarity=0.143 Sum_probs=239.6
Q ss_pred CCccccccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHH
Q 009833 12 PAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLY 91 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~ 91 (524)
..+++++.+.+||...+.. +.+++.+.+.+++. ..+-++.+++ |.+.+.+..|++.++..
T Consensus 22 ~~~~~~~~~t~wrsi~l~~---~~sfl~~v~~sI~~--~s~wpYl~~l---------------D~~A~~~ffG~viaa~s 81 (488)
T KOG2325|consen 22 SLSPLDERKTNWRSIYLAL---LNSFLVAVQFSIYL--TSMWPYLQKL---------------DPTATATFFGLVIAASS 81 (488)
T ss_pred ccccccccCCchHhHHHHH---HHHHHHhhhheEEE--eecchhhhhc---------------CCCCCcchhhHHHHHHH
Confidence 3344445555555444443 34555666666655 3334555553 22778889999999999
Q ss_pred HHHHHHHHhhHHHhhhhhh-HHHHHHHHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC
Q 009833 92 LAGLTATFFASYTTRRLGR-RLTMLIAGIFFIAGVAFN-VAA---Q-NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPT 165 (524)
Q Consensus 92 l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~l~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 165 (524)
+|.+++++.+|++..|.|. |+.++.|.++..+|+++. ++. + .-+.++++|++.|+|.| .....-+|+++....
T Consensus 82 lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 82 LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTV 160 (488)
T ss_pred HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCc
Confidence 9999999999999999997 888999999999999987 332 3 57899999999999977 556788999998888
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC-------cc---hHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcC
Q 009833 166 RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-------WG---WRISLGLAGIPAALLTVG-SLLVTDTPNSLIERG 234 (524)
Q Consensus 166 ~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-------~~---wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~ 234 (524)
++|.++++....+..+|.++||.++.+...+.+. .. +..+-|+.+++.++.+++ .+++.|.++.-..++
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~ 240 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK 240 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc
Confidence 9999999999999999999999998777665531 11 235667777777776666 455777653111110
Q ss_pred ChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHH-hHHHHHHh
Q 009833 235 RFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF-YAPVLFKT 313 (524)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 313 (524)
..+ + ++ .+....+....+..+...+.+.+..+........... ..+.....
T Consensus 241 ~~~----------------~--~~----------~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~ 292 (488)
T KOG2325|consen 241 KRS----------------V--EE----------EKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVM 292 (488)
T ss_pred ccc----------------c--hh----------hccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 000 0 00 0000011111122222233344444444444444333 33444556
Q ss_pred cCCCCcchhHHH----HHHHHHHHHHHhhhhhhh-cccCchhHHHHHHHHHHHHHHHHHHHHhhhc------c--CCCc-
Q 009833 314 LGFGGSASLYST----VITGAVNVLSTLVSIYSV-DKVGRRMLLLEAGIQMFLSQTVIAIILGIKV------K--DHSE- 379 (524)
Q Consensus 314 ~g~~~~~~~~~~----~~~~~~~~~~~~~~g~l~-d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~- 379 (524)
++++.+++.... ++.++....-.+...... .++.+|+.+..+++.......+......... . ...+
T Consensus 293 y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~ 372 (488)
T KOG2325|consen 293 YGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD 372 (488)
T ss_pred hccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcC
Confidence 777666544333 222332222222222222 2333444444443332222222211111000 0 0000
Q ss_pred -------cchhhHHHHHHH--HHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 380 -------DLHTGFAVLVVI--MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 380 -------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
+.....+..... ...+++..+-....+. .++-+|...++.+++..++....+..+..++|.+........
T Consensus 373 ~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~-~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 373 FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL-DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred cccchhhccCcccChhhheeehhheeccccccccchH-HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 000111111111 1122222222222223 334478899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 009833 451 KFGIFLFFSGWVLIMSCFVFF 471 (524)
Q Consensus 451 g~~~~~~~~~~~~~~~~~~~~ 471 (524)
|+...+.+..+.++.....+.
T Consensus 452 g~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 452 GPRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 988777776666655554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-19 Score=180.22 Aligned_cols=383 Identities=15% Similarity=0.131 Sum_probs=3.0
Q ss_pred hhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHH
Q 009833 40 GYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119 (524)
Q Consensus 40 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 119 (524)
+...+... ..+..+.+.| +++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.+
T Consensus 16 ~~~~g~~~--~~lttiErRF-----------------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~ 76 (539)
T PF03137_consen 16 MMVSGYVN--SSLTTIERRF-----------------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGAL 76 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--HHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHH
Confidence 44444444 3346788888 9999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHhhh--------------------------------------------------hHHHHHHHHHHHHhhhh
Q 009833 120 FFIAGVAFNVAAQ--------------------------------------------------NLAMLIVGRILLGCGVG 149 (524)
Q Consensus 120 l~~~~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g 149 (524)
++++|++++++-+ -++.++++.++.|+|..
T Consensus 77 ~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~ 156 (539)
T PF03137_consen 77 LMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT 156 (539)
T ss_dssp ---------------------------------------------------------------------------SSS--
T ss_pred HHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc
Confidence 9999999887510 13577889999999999
Q ss_pred hhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC-C----C-------------c-chHHHHHhhH
Q 009833 150 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-S----Q-------------W-GWRISLGLAG 210 (524)
Q Consensus 150 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-~----~-------------~-~wr~~f~~~~ 210 (524)
..++...+|+-|..++++-+.++|+..+...+|.++|.++++....+. + . . .|..-|++.+
T Consensus 157 pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g 236 (539)
T PF03137_consen 157 PLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICG 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988866543321 1 0 1 3767777777
Q ss_pred HHHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHH---HHHHhhhhccchhhhcccCchhHHHH
Q 009833 211 IPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVE---ASRIAKEVKHPFRNLLKRRNRPQLVI 287 (524)
Q Consensus 211 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
++.++..+.++++|+.-+... +..++.+...++. ++..+++..+.+. ..+..+......+++++++. ++
T Consensus 237 ~~~~l~aipl~~FPk~lp~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~----f~ 308 (539)
T PF03137_consen 237 ILLFLSAIPLFFFPKKLPGTS--ERQEEKESSERKE--EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV----FM 308 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCccCCCcc--cccchhhhhhcch--hhhhhhcccccccccchhhhhhhHHHHHHHHhcChH----HH
Confidence 777777777777776432110 0000000000000 0000000000000 00111222334455555555 77
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH-HHHHHHhhhhhhhcccC--chhHHHHHHHHHHHHH
Q 009833 288 AVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGA-VNVLSTLVSIYSVDKVG--RRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~r~~~~~~~~~~~~~~ 363 (524)
...+...........+..+.|.|+|. ++.++..+.++.....+ +..+|.+++|++.+|++ .|+.+....+...+..
T Consensus 309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 77888888888888999999999975 89998888877765555 66788899999999975 4555544444444443
Q ss_pred HHHHHHH--hh----------hcc-----CC----------------------Cccch-hhHHHHHHHHHHHHHhhhccc
Q 009833 364 TVIAIIL--GI----------KVK-----DH----------------------SEDLH-TGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 364 ~~~~~~~--~~----------~~~-----~~----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 403 (524)
+.....+ .- ... .. .++.. ....+..++..++........
T Consensus 389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~ 468 (539)
T PF03137_consen 389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS 468 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 3311111 00 010 00 00000 011122222222333333334
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNL-LFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 450 (524)
..|..... -..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|..
T Consensus 469 ~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 469 QVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ------------------------------------------------
T ss_pred ccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 44444444 488899999999999887755 46677999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=143.60 Aligned_cols=360 Identities=16% Similarity=0.129 Sum_probs=219.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhh
Q 009833 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 76 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 152 (524)
+|.++++..-+.+.|..-.-...+++|+++|| +|+|+++.+|.+++.+|.++.+.+. +...+.++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 68999999999999888888899999999999 7999999999999999999999884 78899999999999999999
Q ss_pred hhhhhhhhccCCCC--CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC----C
Q 009833 153 QAVPLFLSEIAPTR--IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD----T 226 (524)
Q Consensus 153 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e----~ 226 (524)
+...+++.|.+|++ +|-..++++.++.++|..++|++ ..++.+.+||+..|.+.++-..+.++..+..+. +
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i---~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII---TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH---HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 99999999999865 47788999999999999999999 666666789999999988876666555443321 1
Q ss_pred -----hHHHHhcCChhHHHHHHHHHhCC---CCc-hHHHHHHHHH----HHH-hhhhccchhhhcccC----chhHHHHH
Q 009833 227 -----PNSLIERGRFEEGKAVLRKIRGT---DKI-EPEFLELVEA----SRI-AKEVKHPFRNLLKRR----NRPQLVIA 288 (524)
Q Consensus 227 -----p~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 288 (524)
|.-+..+................ ... .+........ ... --.+.....+....+ ..-++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~ 292 (498)
T COG3104 213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLF 292 (498)
T ss_pred CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHH
Confidence 11010011100000000000000 000 0000000000 000 000000011100011 11111222
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHh--cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch-------hHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR-------MLLLEAGIQM 359 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r-------~~~~~~~~~~ 359 (524)
..+.+.++.-....++.|.....++ .|++ -...+..+...+.-++..++..++..|.+++ .-+.++..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 2222222222233333443333322 2322 3355667777777777777776666664322 2244555555
Q ss_pred HHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHH
Q 009833 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI 439 (524)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~ 439 (524)
..+++++.......... ......++.+..............|+...++....|+...+..++........+..++
T Consensus 372 g~~fl~l~~~~~~~~~~-----~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~ 446 (498)
T COG3104 372 GLGFLILLLAGIWFGGP-----SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLG 446 (498)
T ss_pred HHHHHHHHHHHHhhcCC-----CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555542222111 1112334455555566666777788888888999999998998888888777777777
Q ss_pred HHHHH
Q 009833 440 AQAFL 444 (524)
Q Consensus 440 ~~~~~ 444 (524)
..+.+
T Consensus 447 g~va~ 451 (498)
T COG3104 447 GQVAG 451 (498)
T ss_pred ceecc
Confidence 66666
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=159.45 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=130.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF---NVAAQNLAMLIVGRILLGCGVGFANQ 153 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~ 153 (524)
|.+..+.++..+...++..++.+++|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888899999999999999999999999988887654443332 22345677888899999998887777
Q ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC-cchHHHHHhhHHHHHHHHHHhhcccCChHHHHh
Q 009833 154 AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVTDTPNSLIE 232 (524)
Q Consensus 154 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 232 (524)
....++.|.+|++.|++++++......++..++|.+...+ .+. .+|+.++++..+++++..+..+++||+|+|+.+
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l---~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWL---VESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 7888899999999999999974444445556677663322 222 247877777777777777777778999999876
Q ss_pred c-----CChhHHHHHHHHHhC
Q 009833 233 R-----GRFEEGKAVLRKIRG 248 (524)
Q Consensus 233 ~-----~~~~~~~~~~~~~~~ 248 (524)
+ +|.+|+++.+++++.
T Consensus 439 ~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 439 GATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CccccccchhhHHHHhhcccc
Confidence 5 889999999998873
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-14 Score=130.85 Aligned_cols=327 Identities=12% Similarity=0.060 Sum_probs=212.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhh-----hHHH-HHHHHHHHHHHHHHHHhh-----h-------hH--H-
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG-----RRLT-MLIAGIFFIAGVAFNVAA-----Q-------NL--A- 135 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~-l~~~~~l~~~~~~~~~~~-----~-------~~--~- 135 (524)
+++..-.+.+.+...+... ..+.+|+.+|+.+ ||.. +..|.++...+..+..++ . +. +
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 8899999999999888776 5899999999998 7754 455666666666655543 2 12 2
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH---HHhhHH
Q 009833 136 -MLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRIS---LGLAGI 211 (524)
Q Consensus 136 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~---f~~~~~ 211 (524)
...+.-.+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+ .+.+.+.+.-.-. +...++
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~---~g~lL~~~s~~rL~~v~~~~a~ 166 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIV---FGRLLDPFSPERLIQVIQGVAL 166 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHH---HHHHccccCHHHHHHHHHHHHH
Confidence 445568889999999999999999999999999999999999999999999988 5554444432222 222222
Q ss_pred HHHHHHHHhhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHH
Q 009833 212 PAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVAL 291 (524)
Q Consensus 212 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (524)
+.++..++..+=.|.+..... +..++++...+..++++..++..++.+..+.+
T Consensus 167 i~~~l~~ia~wg~E~r~~~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l 219 (403)
T PF03209_consen 167 IALLLNLIALWGQEPRRSRRA---------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFL 219 (403)
T ss_pred HHHHHHHHHHHhcccCCcccc---------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence 333333333332332110000 00000111223446667777777776665555
Q ss_pred HHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc-ccCchhHHHHHHHHHHHHHHHHHHHH
Q 009833 292 QIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-KVGRRMLLLEAGIQMFLSQTVIAIIL 370 (524)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (524)
..+..+.- -...-|+=-+-+|++..+...+....+.+.+++....+++.. |.++++...+++....+++..+....
T Consensus 220 ~t~a~~~Q---D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~ 296 (403)
T PF03209_consen 220 GTLAFFMQ---DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG 296 (403)
T ss_pred HHHHHHhh---HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 54432211 111223333458999999999999999999999988887666 67888887788777777776655543
Q ss_pred hhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 371 GIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
...+.+.......+++.+.+......... +-+..+++..|..+|.....+.+...++..+.|.+.|.
T Consensus 297 -----------~~~~~~~~~~~~~l~G~g~G~f~vgals~-mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 297 -----------PLGSPWLFRPGVFLLGLGNGLFTVGALSL-MMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred -----------hcccchHHHHHHHHHHHhhhHHHHHHHHH-HHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333333333333322222222 24777788889999999999988888888888887774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=122.96 Aligned_cols=136 Identities=24% Similarity=0.360 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCC
Q 009833 87 TSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR 166 (524)
Q Consensus 87 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 166 (524)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh-cccC
Q 009833 167 IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL-LVTD 225 (524)
Q Consensus 167 ~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 225 (524)
+|++.+++.+....+|..+++.+. +.+.+..+|++.+++.++..++..+..+ +.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLG---GVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhH---HHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999994 4444567899999998887777666543 3454
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-13 Score=129.75 Aligned_cols=319 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--hhhhhhhhhhhhhccCCCC
Q 009833 89 SLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCG--VGFANQAVPLFLSEIAPTR 166 (524)
Q Consensus 89 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~ 166 (524)
...+...+.++..|.++||+|||..+.+.++...+..++..+.. +|.++ +.|+. .+..+....++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44677888999999999999999999999999888888777766 44333 44442 3456677888999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHH
Q 009833 167 IRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRK 245 (524)
Q Consensus 167 ~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~ 245 (524)
+|....++....+..+..++|.++.... ...|.-.+|.+..+..++..+. ++++||+-.. +.+.+ ...+.
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~---~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLV---KFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccc
Confidence 9999999999999999999999954443 3456778888888887777666 6678887421 00000 00000
Q ss_pred HhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHH
Q 009833 246 IRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYS 324 (524)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 324 (524)
....... .......+....+....|..+.......+..........-..+++++ .++++..+.+.+
T Consensus 216 ~~~~~~~-------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 216 LTPGSLD-------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCCCccc-------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000000 00001112222222222222222222222211111111101123333 479999999988
Q ss_pred HHHHHHHHHHHHhhhh-hhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc
Q 009833 325 TVITGAVNVLSTLVSI-YSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS 403 (524)
Q Consensus 325 ~~~~~~~~~~~~~~~g-~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
.+.......++.++.. .+...++.|+....+.....+.....++.. ..+..+..... ..+...
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------------~~w~~~~~~v~----~~~~~~ 346 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------------ETWMMFAAGVV----VALAGI 346 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------------cchhhhHHHHH----HHhhcc
Confidence 8888888889888766 777788988888888777777777776642 22221111111 112223
Q ss_pred cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 404 WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
..|...+.++....++.+|++.++...+..+.+.++|.+++.+...+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33555666677888899999999999999999999999999886543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-13 Score=130.47 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=122.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|+++.+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.|...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888889999999999999999988877776666555555677888888899999998888878888
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
.+..|.+|+ +|++++++++....+|..+++.++ +.+.+.+||+..|++.+++.++.++..+++||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~---G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLA---GIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888998885 599999999999999999999994 44555678999999988888887777776665
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=117.34 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=152.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..|++.+....+...++...+.|.++||+|||+..+..+++++++++. -..++++.++++|++.|++....+.+-.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 4668999999999999999999999988
Q ss_pred hhh-hccCCC----CCcchhHHHHH-HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh-cccCChHH
Q 009833 157 LFL-SEIAPT----RIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL-LVTDTPNS 229 (524)
Q Consensus 157 ~~i-~~~~~~----~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~ 229 (524)
+++ .|.-.. +..+..++... ...++-.+.+.+++-......+ .|-..+|....+..++..++.. ..+|.+.
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg- 221 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYG- 221 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence 865 554322 22222222222 1222223333333222222111 2336788887777666655533 3455431
Q ss_pred HHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 009833 230 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 309 (524)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
+..+ .. +..+..+..++.+.++++ .+.+.....+.....+..+..|.|.
T Consensus 222 -----~~~~--------------~~---------~~~~~~~~a~~~i~~d~r---il~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 222 -----DTSS--------------SS---------SLSGSFREAWRAILSDPR---ILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred -----Cccc--------------cc---------chHHHHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHheeeeece
Confidence 0000 00 000111122344444443 3444455555566666666678887
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc-ccCchhHHH
Q 009833 310 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-KVGRRMLLL 353 (524)
Q Consensus 310 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~r~~~~ 353 (524)
+-.+ + ...-.|++++.+.++.++|+.+..++.. +......+.
T Consensus 271 L~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~ 313 (354)
T PF05631_consen 271 LDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLR 313 (354)
T ss_pred ecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7521 1 2234788999999999999988866544 433333333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=114.46 Aligned_cols=342 Identities=8% Similarity=0.042 Sum_probs=215.4
Q ss_pred ccCCcchhH-HHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 009833 76 CKYDNQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 76 ~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++...+-+..++-|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 388888875 466666777888889999999999999999999999999999999999999999999999999884 678
Q ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcC
Q 009833 155 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERG 234 (524)
Q Consensus 155 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 234 (524)
-.+++--..|+++-.++.+...++.-+|..++.++|-.+... +..+.+...++......+.++..+++|..++...-++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 888998888999888999888888887777777774433321 2345677777766666666666778887665443333
Q ss_pred ChhHHHHHHHHHhCCC--CchHHH----HHH----HHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHH
Q 009833 235 RFEEGKAVLRKIRGTD--KIEPEF----LEL----VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIM 304 (524)
Q Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
+.++... .++.+.++ +.+++. ++. ......-+.....+++..+++. ++...+.+.....++..+.
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~----ll~WSlWWa~atcgy~qv~ 267 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR----LLLWSLWWAFATCGYYQVI 267 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch----HHHHHHHHHHHHhHHHHHH
Confidence 3221111 00000000 000000 000 0000000111122333344444 6677778888888888888
Q ss_pred HhHHHHHHhc---CCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 305 FYAPVLFKTL---GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 305 ~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
+|...+.++. +-.....|.+-+...+.+.++.+..|++..++.+...+..+......+.+++...
T Consensus 268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~------------ 335 (412)
T PF01770_consen 268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS------------ 335 (412)
T ss_pred HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 8988888776 3344556778888888888888999998666666554444433333333332222
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 437 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 437 (524)
...+.+......+++...+..... +...-++.....+.-|...|+++++..+...
T Consensus 336 ~t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 336 FTGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 334555555555555555544432 2222223334455567777776665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=132.37 Aligned_cols=150 Identities=17% Similarity=0.264 Sum_probs=125.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhhh
Q 009833 78 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRILLGCGVGFANQ 153 (524)
Q Consensus 78 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 153 (524)
++.++.+.+.++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877666632 346778889999999999999
Q ss_pred hhhhhhhccCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhcccCCCC---cchHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 154 AVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQ---WGWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 154 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
....++.|++|+++|++++++.+ ...++|.++||++++.+...... +||+..|.+.++..++..++ .++++|+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999997 67889999999996655443322 57999999988887777666 55577763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=135.01 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=126.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hhhhccCCCCCcchhHHH-HHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 157 LFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
.++.|.+|++.|+...+. ++....+|.++++.+ .+.+.+..|||..|.+.+++.++..++ .+.+++.|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~---~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL---AGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH---HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999887655 667788999999999 555666679999999988877766555 33444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-13 Score=129.51 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+....+..+...........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34344444444444556667788888889999999999999999999999999999999999999998887777766655
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... . ..+...+...+.+.+. ....+....++.|.+|++.|+++.++.+....++..+++.+.+.
T Consensus 99 ~~~~------------~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 99 CALA------------T--NVTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred HHHc------------c--chHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 5432 1 1222222222333222 23345566777899999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHH-HHHHHHHHHHHHhcccCC
Q 009833 446 MLCHFKFGIFLFFS-GWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 446 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 477 (524)
+.+..++...+.+. ++..+..++...+.+++.
T Consensus 164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 99888876555544 344444455555666653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=128.10 Aligned_cols=346 Identities=13% Similarity=0.083 Sum_probs=199.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-----GRRLTMLIAGIFFIAGVAFNVAA----QNLAMLIVGRILLGCG 147 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~ 147 (524)
|+++++...+.+...+...+ -+++|.++|-+ .||+-++++.++..++.+..+.. .+.....+.-++..+|
T Consensus 21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g 99 (433)
T PF03092_consen 21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG 99 (433)
T ss_pred CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 99999999999888888775 57789999975 36667777887776666655543 3566777788889999
Q ss_pred hhhhhhhhhhhhhccCC--CCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 148 VGFANQAVPLFLSEIAP--TRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 148 ~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
.+....++-+++.|... ++.||...+.......+|.+++..+ .+.+.+..++|..|.+.+++..+..+..+++.|
T Consensus 100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l---~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL---SGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh---hhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999884 3346777888888888999999888 555566678899998888777776665444333
Q ss_pred ChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHH-HHHHHHHHHhhhHHH-H
Q 009833 226 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVI-AVALQIFQQCTGINA-I 303 (524)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 303 (524)
..+ +.+.++. . .... ++... .....++.....++.++.+...+... ..++..+..... .. .
T Consensus 177 e~~----~~~~~~~---~-~~~~-----~~~~~---~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~a~~ 239 (433)
T PF03092_consen 177 ERK----VRPADEV---F-SFGK-----EEVPC---LFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSIS-SASS 239 (433)
T ss_pred hcc----ccccchh---h-cccc-----cccch---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC-CccE
Confidence 210 0000000 0 0000 00000 00001111222334443333221111 111111111100 01 1
Q ss_pred HHhHHHHHHhcC---CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 304 MFYAPVLFKTLG---FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 304 ~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
.++. .+..+ +++...+.+..+..++.++|..+..+...+..-|+++....++..+..+.-.......+...+
T Consensus 240 fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~G-- 314 (433)
T PF03092_consen 240 FYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLG-- 314 (433)
T ss_pred EEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeC--
Confidence 1111 12234 777777888877888888888887776667777777665554443332221111000000000
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK 451 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 451 (524)
.++. +..+.--.+........+.|.. .+++|+.|+...|+.+++...+.++|..++..+...+.+..+
T Consensus 315 i~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 315 IPDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred cCCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0111 1111111112222222222332 345799999999999999999999999999988888877655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=126.81 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 009833 82 GLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSE 161 (524)
Q Consensus 82 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 161 (524)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999999988888888888888888899999999999999888888889
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCC
Q 009833 162 IAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 226 (524)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 226 (524)
.+|+++|+++.++++....+|..+++++ .+.+.+..||++.|++.++..++..+..+++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPL---AGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999988888 4445556789999999888877776665555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=128.25 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=119.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNL--AMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~ 154 (524)
+.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 8888899999999999999999999999999999999999999998888877776643 34556688899998888888
Q ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHH
Q 009833 155 VPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 217 (524)
Q Consensus 155 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 217 (524)
...++.|.+|+++|+++.++.+....+|..++|.+ .+.+.+..||++.|.+.+++.++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI---ASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH---HHHHHhhhchhhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999 4445556789999998887766543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=123.20 Aligned_cols=144 Identities=28% Similarity=0.367 Sum_probs=132.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRL-TMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.++.+.+++.+...++..++.++++++.||+|||+ .+..+..+..++.++....++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 778999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 223 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 223 (524)
.+++.|..|+++|++.+++.+....+|..+++.+ .+.+.+..+|+..+++.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999 5555556789999999999888877765443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=123.42 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=122.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888888899999999999999999888877766666666778888888899999999998888888
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
.++.|..|++ |++++++++....+|..++|.+ .+.+.+..||+..|++.++..++..++..+++|
T Consensus 311 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSV---GGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHH---HHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 9999988764 6799999999999999999999 444445578999999998888777776655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=120.16 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=123.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..++|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh
Q 009833 157 LFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 221 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 221 (524)
.++.+. |+++|++..++++ ...++|.++++.+ .+.+.+++|+ ..|++.++++++..++..
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~---~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF---AGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 999998 9989999999986 5788999999999 5555566676 567777777666554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=123.90 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 009833 82 GLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSE 161 (524)
Q Consensus 82 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 161 (524)
+.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666777888889999999999999999999999999999998888888888888899999999999888888888999
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh
Q 009833 162 IAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 221 (524)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 221 (524)
.+|+++|++++++.+....+|..++|.+ .+.+.++.||+..|.+.+++.++..++.+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPL---AGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 55555667899999998887777666543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=125.81 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=118.3
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
...+...+|.+.+++|++..+.+++.+...++.+++.++.|+++||+|||+.++++.++..++.++..+.
T Consensus 183 ~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa---------- 252 (742)
T TIGR01299 183 VFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV---------- 252 (742)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445566777778899999999999999999999999999999999999999998877777666555432
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--------- 450 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------- 450 (524)
. ..+..++.-++.+.+.+ +..+....++.|.+|++.|+...++.+.+..+|.++++.+...+....
T Consensus 253 --~--s~~~llv~R~l~G~g~g-~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 253 --Q--GYGFFLFCRLLSGFGIG-GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred --h--hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 1 12222222233333322 233677788899999999999999999999999988888766655433
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHhcccCC
Q 009833 451 ----KFGIFLFFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 451 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (524)
+|..++.+.++..+.+++..+++||..
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 355566666666666666667788763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=119.77 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHH
Q 009833 282 RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFL 361 (524)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~ 361 (524)
.++.+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445556666666666667777778888888999999999999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009833 362 SQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ 441 (524)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~ 441 (524)
+.+..... + +.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..+++.
T Consensus 90 ~~~~~~~~------------~--~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 90 GTLACGFA------------P--GYITMFIARLVIGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHh------------c--cHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66655432 1 11222222222222222 223445566789999999999999999999999999999
Q ss_pred HHHHHHhhhc--hhhHHHHHHHHHHHHHHHHHhcccC
Q 009833 442 AFLSMLCHFK--FGIFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 442 ~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
+.+.+.+..+ |...+.+.++..+..++.....||+
T Consensus 155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998887765 6655555544444444444445554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=119.50 Aligned_cols=175 Identities=11% Similarity=0.085 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 364 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 364 (524)
++.+.+..++...+......+.|.++ +++|++..+.++..+...++..++++..|+++||+|||+.+..+.+...++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 45555566666666677777777666 46899999999999999999999999999999999999998888777666655
Q ss_pred HHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 365 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 444 (524)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 444 (524)
.+.+. + +.+..++...+...... ...+....+..|..|++.|+++.++.+...++|..++|.+.+
T Consensus 89 ~~~~~------------~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 89 AIPLV------------N--NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHH------------h--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432 1 12222222222222222 233445566679999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHHHHHH-HHHHHhcccC
Q 009833 445 SMLCHFKFGIFLFFSGWVLIMS-CFVFFLLPET 476 (524)
Q Consensus 445 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 476 (524)
.+.+ .++...+...+++.+.. ++..+..++.
T Consensus 154 ~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 154 LLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8875 56554444444444333 3333444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-12 Score=122.11 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=121.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999999999999999999888777777777777778888888888999999888888999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC-cchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ-WGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
+++.|.+|+++|++++++.+....+|..++|.+ .+.+.++ .+|...+++.....++..++.+++.+
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL---AGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh---HhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 4444443 35666666666655555555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=121.24 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++..++.++........+..+.|.+.+++|++..+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 44445555555444456677889999999999999999999999999999999999999999999998888887777665
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... . +.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+.
T Consensus 105 ~~~~------------~--~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 105 FGFS------------S--SLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHH------------h--HHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 1 1222222222222222222 24445667899999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHH-HHHHHHHHHhccc
Q 009833 446 MLCHFKFGIFLFFSGWV-LIMSCFVFFLLPE 475 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~ 475 (524)
+.+..+|...+...++. .+.+++..++++|
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888887666554433 3333344444554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=115.36 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 009833 283 PQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362 (524)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 362 (524)
.+.++.+.+.+......--.+..-.|.+.++.++|..+.+.+.+.+.+..-++.++.|.++||.+.|+.+..+.++.++.
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 33466666666666666667778889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 363 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
.+++.+. .+.....++..+-+.+.+.++.|..-.+ ..-+|+++||+..++-|...++|+.+.|++
T Consensus 108 nil~Gfs--------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 108 NILFGFS--------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHhhh--------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHHH
Confidence 8888764 2555566666777777788887776655 689999999999999999999999999999
Q ss_pred H--HHHHhhhchhhHHHHHHHH-HHHHHHHHHhcccC
Q 009833 443 F--LSMLCHFKFGIFLFFSGWV-LIMSCFVFFLLPET 476 (524)
Q Consensus 443 ~--~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 476 (524)
. +.+..+.++...+++.+++ ++.++++++..+++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9 8888887877665555444 45555555555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=125.53 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=116.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh--hhhHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR--LGRRLTML--IAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~l~--~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|.+..+.+++.+...++..+++++.|+++|| +++|+... .+.++.+++.+++.+.++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 8999999999999999999999999999997 33443333 3444445556666778899999999999999999999
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCc-chHHHHHhhHHHHHHHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW-GWRISLGLAGIPAALLTV 218 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~ 218 (524)
+...+++.|.+|++++++.+++++....+|..+||.+ .+.+.+.. +|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i---~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL---AGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc---eeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999 66666655 599999998887665544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=118.61 Aligned_cols=178 Identities=17% Similarity=0.099 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
.+...+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333444444444555566678888899999999999999999999999999999999999999999887777776665
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... + ..+...+..++.+.+. ....+....++.|.+|++.|+++.++.+....++..+++.+.+.
T Consensus 87 ~~~~------------~--~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 87 LALS------------N--NIETLLVLRFVQAFGA-SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHH------------c--cHHHHHHHHHHHHcch-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1 1222222222222222 22234555667899999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHH-HHHHHHHHHHHhcccCCC
Q 009833 446 MLCHFKFGIFLFFSG-WVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 478 (524)
+.+..++...+...+ ...+..++..+..||+++
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 988888775554433 334444444445565443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=120.02 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=113.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hH-H-HHHHHHHHHHhhhhh-h
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NL-A-MLIVGRILLGCGVGF-A 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~-~-~l~~~r~l~G~~~g~-~ 151 (524)
|.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+-++.+++.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 88877777888888889999999999999999999999999999998887765432 11 1 223344444544443 3
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhc---ccCCCCcchHHHHHhhHHHHHHHHHHh-hcccCCh
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT---SHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTP 227 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 227 (524)
.+....++.|.+|+++|++++++......+|..+++.+.... +.+.+..+|++.|++.++++++..++. ++.||+.
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 367789999999999999999999999999998886653322 244556889999998888777766664 4567763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=116.93 Aligned_cols=173 Identities=10% Similarity=0.122 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc-CchhHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~ 363 (524)
++..+.........++.+..++|.++.+ +|++..+++.+.........++.+++|+++||+ |||+.+.++.++..++.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ 90 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 4545555555566677788888888754 799999999999999999999999999999998 99999998888888776
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch--hhhhhhHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTFVIAQ 441 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~i~~~ 441 (524)
+++... ...... ..........+.+ ...+....+.+|.+|++ .|.++.++.+...++|+.++|.
T Consensus 91 lll~~~------------~~~~~~-~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 91 VVLGAS------------EIHPSF-LYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHh------------hcchhH-HHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 654321 100111 1111112212222 22244456678999976 6999999999999999999999
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 442 AFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 442 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
+.+++.+..|+...+..+++..+.+++.++.
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877666665555555444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=123.04 Aligned_cols=136 Identities=21% Similarity=0.135 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 009833 83 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEI 162 (524)
Q Consensus 83 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 162 (524)
.+.+.+++.++..++.+.+|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46677777888899999999999999999999999988888888888888889999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh
Q 009833 163 APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 221 (524)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 221 (524)
.|+++|++.+++......+|..+||.+ .+.+.+..||+..|++.+++.++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLM---GAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHH---HHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 44455567899999999888877766543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=118.60 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=116.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... +........++.|++.+...|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHHH
Confidence 88899999999999999999999999999999999999988888777665443 223444577888888888889999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 223 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 223 (524)
+++.|..|+++++.+.+......++|.++||.+ .+.+.++.+|++.|.+.+...++..+..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSF---TAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888888888999999999999 5555566789999999888877666555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=120.83 Aligned_cols=163 Identities=19% Similarity=0.147 Sum_probs=118.9
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
...+....|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..++.......
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 79 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------- 79 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence 3455566777788899999999999999999999999999999999999999988887777766665543
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 459 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 459 (524)
. +.+...+...+.+.+.+ ...+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+...
T Consensus 80 --~--~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 80 --G--AYVSLYILRVLLGAAEA-PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred --c--CHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 1 22222222233333322 334555667789999999999999999999999999999999988888877655554
Q ss_pred HHHHH-HHHHHHHhcccCC
Q 009833 460 GWVLI-MSCFVFFLLPETK 477 (524)
Q Consensus 460 ~~~~~-~~~~~~~~~~~~~ 477 (524)
+...+ ..++..+..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHhhheecCCC
Confidence 44433 3333344445443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-11 Score=116.81 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 009833 283 PQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362 (524)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 362 (524)
++.++...+.+++............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34455556666665555666677778777889999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 363 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
....... ++ .....+.-.+.+.+.+ ...|....++.|.+|++.|+++.++.+....+|..+++.+
T Consensus 87 ~~~~~~~------------~~--~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 87 STATMFA------------TG--PESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHh------------cC--HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 11 1122222222222222 2335555667899999999999999999999999999999
Q ss_pred HHHHHh------hhchhhHHHHHH-HHHHHHHHHHHhcccCCC
Q 009833 443 FLSMLC------HFKFGIFLFFSG-WVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 443 ~~~~~~------~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 478 (524)
.+.+.+ ..+|...+.+.+ ..++...+.+++++|++.
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 988764 246665555543 334444455566676543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=120.76 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=107.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF--NVAAQNLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999998776655444443322 223456667778888888754444434
Q ss_pred hhhhhhccCCCCCcchhHHHHHHHHHH-HHHHHHHHHhhcccCCC------------CcchHHHHHhhHHHHHHHHHHhh
Q 009833 155 VPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKS------------QWGWRISLGLAGIPAALLTVGSL 221 (524)
Q Consensus 155 ~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~------------~~~wr~~f~~~~~~~~~~~~~~~ 221 (524)
......|.+|+++|+++.|+.+....+ |..++|.+ .+.+.+ ..+|+..|++.++..++..+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~---~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG---LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh---HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 445677999999999999999988886 77888888 444444 46799999988777766655544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-11 Score=114.79 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=114.8
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 302 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
......|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+.....++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788888999999999999999999999999999999999999999999888777776665542
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGW 461 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (524)
+ +.+..++.-.+.+.+. ....+....++.|.+|+++|+++.|+......++..++|.+.+.+.+..+|...+...+.
T Consensus 95 ~--~~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 W--NFTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred c--cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 1 1222222222222222 222344456668999999999999999999999999999999998888887765555444
Q ss_pred H-HHHHHHHHHhcccC
Q 009833 462 V-LIMSCFVFFLLPET 476 (524)
Q Consensus 462 ~-~~~~~~~~~~~~~~ 476 (524)
. .+..++.....|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3 33333334445543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=119.66 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=126.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998888888888888888888888888888888899999999988888888
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
+++.|..|++.|+++++++.....+|..+|+.+ .+.+.+.+|++..+++.++..++..++ ...+++.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l---~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAAL---LGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHH---HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999 555555678888888777666555444 45566643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=108.84 Aligned_cols=174 Identities=16% Similarity=0.091 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++.+.+..|......+...-.+|.+.+++|.+...+|...+.++++..++.++...+.||+.||+++.....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 56667777777777788888999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
..+.. .+..++..=...+.....+.++...+..++.|+++|+++.++.+....+...++.++..+
T Consensus 95 ~alAp---------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 95 SALAP---------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 77652 112222222222222222334556777899999999999999999999999999999999
Q ss_pred HHhhhchhhHH-HHHHHHHHHHHHHHHhcc
Q 009833 446 MLCHFKFGIFL-FFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 446 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 474 (524)
+-+..||+..+ .++++..+..+..+..+|
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999988554 445555555556667777
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-11 Score=115.98 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=121.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|++..+.+++.+.+.++..++.++.|+++||+|||+++.....+..+..++....++.+.+.+..++.|++.+..++...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999888887777777776777877777888999999888888888
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
++..|..|. ++++..+.......+|..++|.+ .+.+.+..||+..+++.+++.++..++...+++
T Consensus 317 ~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~---~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 317 TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVV---TSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHH---HHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 888887754 46788888888899999999999 555555678999999888877777665555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=115.66 Aligned_cols=168 Identities=12% Similarity=0.041 Sum_probs=119.3
Q ss_pred HHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 009833 293 IFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGI 372 (524)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (524)
.+....+........|.+..+.+.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444556666788888888899999999999999999999999999999999999998877766666655443210
Q ss_pred hccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 009833 373 KVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF 452 (524)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 452 (524)
...+.+...+...+.+.+. ....+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..++
T Consensus 88 ---------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 88 ---------GGLNIWQVYVLAGILAIAQ-AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred ---------CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0012222222222222222 223455567778999999999999999999999999999999999988887
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009833 453 GIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~ 470 (524)
...+.+.++..+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 158 KWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766655554444443333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=121.11 Aligned_cols=148 Identities=13% Similarity=0.029 Sum_probs=115.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-----h------hHHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-----Q------NLAMLIVGRILLG 145 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~------~~~~l~~~r~l~G 145 (524)
|.+..+.++......++..++.+++|+++||+|||+.+..+.++.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999988888877766521 1 3333333333333
Q ss_pred hhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHh-hccc
Q 009833 146 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVT 224 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~ 224 (524)
.......+....++.|.+|+++|++++++......+|.++++.+ .+.+.++.+|++.|++.++++++..++. ++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL---FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 33333456677788999999999999999999999999999988 4444555789999999888877776664 4566
Q ss_pred CCh
Q 009833 225 DTP 227 (524)
Q Consensus 225 e~p 227 (524)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-11 Score=116.21 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+....+..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.+...++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 44444555555555556666677777889999999999999999999999999999999999999999988888887766
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... . ..+...+.-.+.+.+.+ ...+....++.|.+|++.|+++.++......+|..+++.+.+.
T Consensus 100 ~~~~------------~--~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 100 SGLA------------S--GVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHH------------h--HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 5543 1 12222222222222222 2234455667899999999999999999999999999999888
Q ss_pred HHhhhchhhHHHHHHHH
Q 009833 446 MLCHFKFGIFLFFSGWV 462 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~~~ 462 (524)
+.+..+|...+.+....
T Consensus 165 l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HcccCCHHHHHHHHHHH
Confidence 88888877666554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=112.38 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=111.0
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 302 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
......|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44445677888899999999999999999999999999999999999999999988888766655432
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGW 461 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (524)
. +.+..++.-.+.+.+.+. ..+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..+|...+.+.+.
T Consensus 106 ~--~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 N--SFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred C--hHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 1 222222222222222222 3355566678999999999999999999999999999999999998888765555443
Q ss_pred HH
Q 009833 462 VL 463 (524)
Q Consensus 462 ~~ 463 (524)
..
T Consensus 183 l~ 184 (394)
T PRK10213 183 MG 184 (394)
T ss_pred HH
Confidence 33
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=115.74 Aligned_cols=175 Identities=12% Similarity=0.112 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHh---cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHHHH
Q 009833 285 LVIAVALQIFQQCTGINAIMFYAPVLFKT---LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMF 360 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~ 360 (524)
.++.+.+..+....+++....++|.++++ +|++..+++.......++..++.+++|+++|| +|||+.+..+.++..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 35556666666667777888888888764 79999999999999999999999999999999 899999999988888
Q ss_pred HHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchh---hhhhhHHHHHHHHHHHH
Q 009833 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET---RSAGQSVTVCVNLLFTF 437 (524)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~ 437 (524)
++.+++... . ..+...+...+.+.+ .....|....+.++.+|++. |+++.++.+...++|..
T Consensus 91 ~g~~~~~~~------------~--~~~~~~~~~~l~g~g-~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 91 LGHFMLAMS------------I--YPDLIFYGLGTIAVG-SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHhc------------c--cHhHHHHHHHHHHhc-cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 877666542 1 111222222222222 22233455566678887653 88899999999999999
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcc
Q 009833 438 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 438 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
++|.+.+.+.++.++...+...++..+.+++.++..+
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999988887666665554444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=116.97 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 009833 285 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 364 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 364 (524)
.++...+..++.......+..+.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 35666666677776777788899999999999999999998888899999999999999999999998887776666655
Q ss_pred HHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009833 365 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFL 444 (524)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 444 (524)
..... . ..+...+...+.+.+.+ ...|....++.|.+|++.|+++.++.+....++..++|.+.+
T Consensus 91 ~~~~~------------~--~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 91 FCALS------------G--TLNELLLARVLQGVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHh------------C--CHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44321 1 11222222222222222 223455666679999999999999999999999999999999
Q ss_pred HHHhhhchhhHHHHHHHH
Q 009833 445 SMLCHFKFGIFLFFSGWV 462 (524)
Q Consensus 445 ~~~~~~g~~~~~~~~~~~ 462 (524)
.+.+..+|...+.+....
T Consensus 156 ~l~~~~gw~~~f~~~~~~ 173 (471)
T PRK10504 156 LLVEYASWHWIFLINIPV 173 (471)
T ss_pred HHHhhccHHHHHHHHHHH
Confidence 999988877555554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=112.86 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=114.9
Q ss_pred cCCcchhHHHHH-HHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTS-SLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAA-QNLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g~~ 151 (524)
|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++.++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999974 6678999999999999999999998877666655554332 232 35555566677766666666
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCC
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 226 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 226 (524)
.+...++..+..+++.+++..++.+...++|..+++.+ .+.+.+..||+..|.+.++.+++..+...+++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~---~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV---AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778888999999999999999999999999888777 5555556789999999888888877766555543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=112.84 Aligned_cols=142 Identities=10% Similarity=0.083 Sum_probs=110.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHH-HHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTML-IAGIFFIAGVAFNVA-----AQNLAMLIVGRILLGCGVGF 150 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~ 150 (524)
|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.+++..++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999988764 333434444333332 24567777889999998887
Q ss_pred hhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc
Q 009833 151 ANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 223 (524)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 223 (524)
..+. ...+.|..| ++|++++++.+....+|..++|.+ .+.+.+..||+..+++.++..++..++..|+
T Consensus 333 ~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i---~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 333 YVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAI---AVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 6554 456677654 579999999999999999999999 4555566789999999988877776665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=113.48 Aligned_cols=177 Identities=11% Similarity=0.104 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+....+.......+........|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.+...++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444445555556667788888999999999999999999999999999999999999999999887777766665
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... . +.+.......+.+.+.+ ...+....++.|.+|++.|+++.++.+....++..++|.+.+.
T Consensus 85 ~~~~------------~--~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 85 CSLA------------E--TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHh------------C--cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1 11112222222222222 2223455667899999999999999999999999999999888
Q ss_pred HHhhhchhhHHHH-HHHHHHHHHHHHHhcccCC
Q 009833 446 MLCHFKFGIFLFF-SGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 446 ~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 477 (524)
+.+..+|...+.. +.+..+..++.....+|++
T Consensus 150 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 150 IMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8777777654444 4444444444555566654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=116.99 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=116.8
Q ss_pred hhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 009833 298 TGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 377 (524)
Q Consensus 298 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (524)
.....+....|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 80 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------- 80 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--------
Confidence 334556667788888899999999999999999999999999999999999999998888877777666543
Q ss_pred CccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhchhhHH
Q 009833 378 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ-AFLSMLCHFKFGIFL 456 (524)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~g~~~~~ 456 (524)
. ..+..++...+.+. ......+....++.|.+|+++|+++.++.+....+|..+++. +.+.+.+..++...+
T Consensus 81 ----~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T TIGR00881 81 ----T--SLWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF 153 (379)
T ss_pred ----h--hHHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence 1 22222222222222 223334566677789999999999999999999999999994 555555666665544
Q ss_pred HHHH-HHHHHHHHHHHhcccC
Q 009833 457 FFSG-WVLIMSCFVFFLLPET 476 (524)
Q Consensus 457 ~~~~-~~~~~~~~~~~~~~~~ 476 (524)
...+ +..+..++..++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 154 IVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHHHheeeCCC
Confidence 4433 3344444444455543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=116.59 Aligned_cols=177 Identities=12% Similarity=0.010 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHH
Q 009833 284 QLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~ 363 (524)
+.+..+.+..+.............|.+.+++|.+..+.+...+...++..++.++.|++.||+|||+.+..+.++..++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34555556666655566666777788888899999999999999999999999999999999999999988887777776
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 443 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 443 (524)
+..... . +.+...+...+.+. ......+....++.|.+|++.|+.+.++.+....+|..+++.+.
T Consensus 100 ~~~~~~------------~--~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 100 LACGFA------------P--GYWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHH------------h--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665542 1 11222222222222 22222344456668999999999999999999999999999999
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHHHhccc
Q 009833 444 LSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 444 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (524)
+.+.+..+|...+.+.++..+..++.....|+
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~ 196 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPE 196 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998888876665544433333333333343
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=111.13 Aligned_cols=177 Identities=11% Similarity=0.044 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++...+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 45555555555555566777888888999999999999999999999999999999999999999999988888777766
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... + +.+..++.-.+.+.+.+. ..+....++.|.+|++.|+.+.++......++..+++.+.+.
T Consensus 85 ~~~~------------~--~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 85 FTLS------------S--SYLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHh------------C--cHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 5542 1 122222222222222221 123334556788899899999999998899999999999998
Q ss_pred HHhhhchhhHHHHHHHH-HHHHHHHHHhcccCC
Q 009833 446 MLCHFKFGIFLFFSGWV-LIMSCFVFFLLPETK 477 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~ 477 (524)
+.+..++...+...+.. .+..+......|+.+
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88887877555544433 333333444566643
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-11 Score=115.99 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=106.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGV--AFNVA--AQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+++..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999998776555444433 22222 2467777788999999999999
Q ss_pred hhhhhhhhccCCCCCcchhHHH-HHHHHHHHHHHHHHHHhhcccCCCCcc-hHHHHHhhHHHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAA 214 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~ 214 (524)
+...+++.|.+|+++|++++++ .+.+..+|..++|.+++ .+.++.| |+..++...+..+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g---~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA---ALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH---HHHHHcCcchhHHHHHHHHHH
Confidence 9999999999999999999998 45666788889998844 4444455 8877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=111.25 Aligned_cols=146 Identities=15% Similarity=0.064 Sum_probs=112.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA-AQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++... .++...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 999999999999999999999999999999999999999888887777665543 2222222 2346788888888877
Q ss_pred hhhhhccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCc-chHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 156 PLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW-GWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 156 ~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~-~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
.....+..+ +++|++..++.+....++..++|.+.+.+ .+.. +|+..|.+.++..++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL---RSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 56799999999999999999999995444 3333 3778888877766665555 55677764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=110.28 Aligned_cols=173 Identities=14% Similarity=0.021 Sum_probs=116.5
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHH
Q 009833 290 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 369 (524)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 369 (524)
.+...+............|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 93 (394)
T PRK11652 14 VLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA 93 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445556788888899999999999999999999999999999999999999988877766666554432
Q ss_pred HhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 370 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
. +.+..++...+.+.+.+ ...+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+.
T Consensus 94 ------------~--~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 94 ------------H--SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred ------------c--cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11122222222222211 12234445556888888899999999988999999999999998888
Q ss_pred hchhhHHHHHHH-HHHHHHHHHHhcccCC
Q 009833 450 FKFGIFLFFSGW-VLIMSCFVFFLLPETK 477 (524)
Q Consensus 450 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 477 (524)
.++...+.+.++ ..+..++..++.||++
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 787755555433 3333344445566643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=112.22 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=108.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA---A-QNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|.+......+.....+...++.+++|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 777766666666666777888899999999999999998887766655443322 1 234555556777788888888
Q ss_pred hhhhhhhhccCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCC
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 226 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 226 (524)
+...+++.|.+|.+.|+...++.. .+..+|..++|.+...+.... ..+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888999999999999988888854 445588888888844432211 1358888888877777776666666664
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=117.65 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+..+++..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 44455556666666677778889999999999999999999999999999999999999999999999888877777666
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... + +.+..+....+. +.......+....++.|.+|++.|+++.++......++..++|.+.+.
T Consensus 84 ~~~~------------~--~~~~l~~~~~~~-G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 84 CGVA------------P--NLELMIIFRVIQ-GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HhCc------------C--CHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 5432 1 122222222222 222233345566777899999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHH-HHHHHHHHHhcccCC
Q 009833 446 MLCHFKFGIFLFFSGWV-LIMSCFVFFLLPETK 477 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~ 477 (524)
+.++.+|...+...... .+..++..+..++++
T Consensus 149 l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 149 IIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 99888876555444333 333333444555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-09 Score=99.25 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCC
Q 009833 87 TSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR 166 (524)
Q Consensus 87 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 166 (524)
.++-+....+++++.+.+.|+.|.|..+.++...+..-.+..-+ +|-+.+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77778888999999999999999999999999998887776654 56778888999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHh
Q 009833 167 IRGGLNILFQLNVTIGILFANLVNY 191 (524)
Q Consensus 167 ~r~~~~~~~~~~~~lG~~~~~~~~~ 191 (524)
++.+..++.-+....+.++|..+-.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 9999999998888888888877643
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=109.52 Aligned_cols=172 Identities=12% Similarity=0.067 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++.+.+..+....+........+.+.++.+.++...++....+.+...+..++.|++.||+|||+++..+..+..++.+.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 33444444444443344455555567788888888999999999999999999999999999999999988887776655
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
+... .. . .+.- ...+.......|....++.|.+|+++|+++.|+......++..++|.+.|.
T Consensus 85 ~~~~------------~~--~---~~~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 85 MLFG------------IH--P---LLAY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHH------------HH--H---HHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 11 1 1111 122233334456777788999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHHHhcccC
Q 009833 446 MLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
+.+.. +...+...+.+.+.+.+..+.+||.
T Consensus 147 l~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 147 LADPH-AEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 98864 3333333333333334444556654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-11 Score=112.66 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=114.2
Q ss_pred HhhhHHHHHHhHH-HHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009833 296 QCTGINAIMFYAP-VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKV 374 (524)
Q Consensus 296 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (524)
............| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----- 82 (352)
T PF07690_consen 8 SGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA----- 82 (352)
T ss_dssp HHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----
Confidence 3334455566667 6667799999999999999999999999999999999999999998888888874444321
Q ss_pred cCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 009833 375 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGI 454 (524)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 454 (524)
. +.+..++...+.+.+. ....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++..
T Consensus 83 --------~-~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 83 --------S-NFWLLLIARFLLGIGS-GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp --------C-CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred --------h-hHHHHhhhcccccccc-ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 1 1222222222222222 23345666777899999999999999999999999999999999988877765
Q ss_pred HHHHHHHHHHHHHH
Q 009833 455 FLFFSGWVLIMSCF 468 (524)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (524)
.+...+...+...+
T Consensus 153 ~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 153 AFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhh
Confidence 55554444444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-10 Score=108.63 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=116.3
Q ss_pred HHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHH
Q 009833 291 LQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 369 (524)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 369 (524)
...+....+.+....+.+.++ ++.|.+..+.++......+...+..++.|+++||++||+.+..+.....++.+.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 333334444455555666554 6689999999999999999999999999999999999999998888887777665532
Q ss_pred HhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 370 LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
+ ..+...+...+.+.+.+ ...|....++.|.+|++.|+++.|+.+....++..++|.+.+.+. .
T Consensus 97 ------------~--~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~ 160 (400)
T PRK11646 97 ------------H--EPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q 160 (400)
T ss_pred ------------c--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1 12222222222222222 223444556678999999999999999999999999999999988 5
Q ss_pred hchhhHHHHHHHH-HHHHHHHHHhccc
Q 009833 450 FKFGIFLFFSGWV-LIMSCFVFFLLPE 475 (524)
Q Consensus 450 ~g~~~~~~~~~~~-~~~~~~~~~~~~~ 475 (524)
.++...+.+.++. .+.+++..+..++
T Consensus 161 ~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 161 YDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6766554444333 3333333444554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-10 Score=112.48 Aligned_cols=177 Identities=18% Similarity=0.096 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 009833 285 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 364 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 364 (524)
.+..+++..+....-...+....|.+.+++|.+..+.++....+.++...+.+..|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45566666777777777788889999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeeccc-CCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009833 365 VIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSET-FPLETRSAGQSVTVCVNLLFTFVIAQAF 443 (524)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 443 (524)
..... + +.+..++.-.+.+.+.+. ..+.....+.+. .|++.|+++.|+......+|..++|.+.
T Consensus 87 ~~~~a------------~--~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lg 151 (495)
T PRK14995 87 AAAFS------------P--TASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVG 151 (495)
T ss_pred HHHHc------------C--CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76643 1 122222222222222222 223333333344 4778999999999999999999999999
Q ss_pred HHHHhhhchhhHHHHHHHH-HHHHHHHHHhcccC
Q 009833 444 LSMLCHFKFGIFLFFSGWV-LIMSCFVFFLLPET 476 (524)
Q Consensus 444 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 476 (524)
+.+.++.+|...+...... .+..++..+..|+.
T Consensus 152 g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 152 GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998887665554433 33333444555654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=113.68 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++...+...........+....|.+.+ .|+++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 107 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL 107 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence 444444444444333444556676655 5999999999999999999999999999999999999888877776666655
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
...... .........+...+.+.+.+... +.....+.|.+|++.|+++.++.+....+++.+++.+.+.
T Consensus 108 ~~~~~~----------~~~~~~~l~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 108 MGFVPW----------ATSSIAIMFVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred Hhcccc----------ccchHHHHHHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 433210 00111112222222222222222 3334455789999999999999999999999999888776
Q ss_pred HHh-hhchhhHHHH-HHHHHHHHHHHHHhcccC
Q 009833 446 MLC-HFKFGIFLFF-SGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 446 ~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 476 (524)
..+ ..+|...+.. +++..+..++.+++.+|+
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 554 3566655554 444444444555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-10 Score=108.57 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=115.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHH
Q 009833 157 LFLSEIAPTRIRGGLNILFQ-LNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTV 218 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 218 (524)
.++.+. +++++++..+... ...++|..+|+.+ .+.+.+..|+ ..++..+++.++.++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i---~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL---SGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 998886 5666788888876 5567888899998 5555556677 466666666555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-10 Score=110.01 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~ 363 (524)
++..++..+.....++....+++.++ +++|++..++..+...+.....+..+++|+++|| +|||+.+..+.++..++.
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 45555555556666677777777666 4589999888888888887788888899999999 999999999999988888
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch--hhhhhhHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTFVIAQ 441 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~i~~~ 441 (524)
+.+.+.. . ......+.....+ .......|....++.|.+|++ .|+.+.++.....++|..++|.
T Consensus 96 ~~~~~~~------------~-~~~ll~~~~~l~~-ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 96 FMTGMSL------------L-KPDLIFIALGTIA-VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHhc------------c-chhHHHHHHHHHH-hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 7766531 1 1111212222222 222333455567778999887 4577899999999999999999
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcc
Q 009833 442 AFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 442 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
+.+++.++.||+..+.+..+..+.+++.+...+
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999987666665555554444444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-10 Score=98.70 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=119.3
Q ss_pred hhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Q 009833 53 PHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA- 131 (524)
Q Consensus 53 p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~- 131 (524)
|++++.+ |+|.+|...+.+...+|..+| ++.|.+.|++|++.++.+|.+...+|..+..++
T Consensus 26 ~~Lk~~l-----------------~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 26 PQLKSRL-----------------GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HHHHHHh-----------------CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888 999999999999999999874 889999999999999999999999999887764
Q ss_pred ------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHH
Q 009833 132 ------QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRIS 205 (524)
Q Consensus 132 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~ 205 (524)
.++|.+.+..++.|.+.+....++.....+.||. +||++.|+.-...+++..+-..+. ..+.+...-+..
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~---~~~f~~~~~~fl 163 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIY---SAFFGDDPSSFL 163 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHH---HHHcCCChHHHH
Confidence 4688999899999999888888888888888975 699999999999999887766662 222222223444
Q ss_pred HHhhHHHHHHHHHHhhcccCCh
Q 009833 206 LGLAGIPAALLTVGSLLVTDTP 227 (524)
Q Consensus 206 f~~~~~~~~~~~~~~~~~~e~p 227 (524)
+.+...+.++.++..++++..|
T Consensus 164 l~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 164 LFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHHHHHHHHhhheeccC
Confidence 4444444445444555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=109.13 Aligned_cols=162 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
.....-+|.+.++++.+....+...+.+.++..++.++.|+++||+|||+++..+..+..++.+.....
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------- 101 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----------- 101 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------
Confidence 334444556667899999999999999999999999999999999999999998877777666555432
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 460 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~ 460 (524)
+ +....++.-.+.+.+.+ ...+....+..|.+|++.++++.++.+....++..++|.+.+.+.+..+|...+...+
T Consensus 102 -~--~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 102 -T--SMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred -C--CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 11122222222222211 1223445666789999999999999999999999999999988888878776555544
Q ss_pred HHHHHHH-HHHHhcccCC
Q 009833 461 WVLIMSC-FVFFLLPETK 477 (524)
Q Consensus 461 ~~~~~~~-~~~~~~~~~~ 477 (524)
+..+.+. ...+..||++
T Consensus 178 ~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 4433333 3344567654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-10 Score=112.21 Aligned_cols=153 Identities=17% Similarity=0.125 Sum_probs=103.8
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHH
Q 009833 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTF 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (524)
+..+.+.+.+...++.+++.++.|++.||+|||+.+..+.++..++.++...... .. ........++.-.+.
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-----~~---~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-----SS---PKSVMATLCFWRFWL 125 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-----cc---cchHHHHHHHHHHHH
Confidence 3445678888899999999999999999999999998888777777665544210 00 000112222333333
Q ss_pred HhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhchh
Q 009833 397 ISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC-----------------------HFKFG 453 (524)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------~~g~~ 453 (524)
+.+.+ ...+....+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+
T Consensus 126 G~~~g-~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIG-GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHh-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 33333 2335566788999999999999999999999998888877665432 12566
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCC
Q 009833 454 IFLFFSGWVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (524)
..+.+.++..+...+..+++||+.+
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 6666666555555566667888643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=112.31 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=104.4
Q ss_pred HHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccch
Q 009833 303 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 382 (524)
Q Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (524)
+....|.+.++ |++..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.+.+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----------c
Confidence 45567777766 999999999999999999999999999999999999999888877777765554310 0
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhhchhhHHHHH-H
Q 009833 383 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF-LSMLCHFKFGIFLFFS-G 460 (524)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~g~~~~~~~~-~ 460 (524)
....+..+....+.+.+.+... +.....+.|.+|++.|+++.++.+....+++.+.+++. ..+....+|...+.+. .
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1111222222222222333222 32334456889999999999999888888875544443 2333333555444443 3
Q ss_pred HHHHHHHHHHHhcccC
Q 009833 461 WVLIMSCFVFFLLPET 476 (524)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (524)
...+..++..++++|+
T Consensus 196 ~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 196 AAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHccCC
Confidence 3444444555556654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=108.72 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+.......+...........+.|.+.+++|++..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 117 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFC 117 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33333344444444455666677888889999999999888888999999999999999999999988877776666555
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
.... .+ .....+..++.+.+.+ ...+ ...+++|.+|++.|+++.|+.+....+|..+++.+.+.
T Consensus 118 ~~~~------------~s--~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 118 MSLV------------SS--ATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHh------------cC--HHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 11 1112121222222222 1222 23356799999999999999988888888777766654
Q ss_pred HHh----h-----hchhhHHHHHHHHHHHHHHHHHhcc
Q 009833 446 MLC----H-----FKFGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 446 ~~~----~-----~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
+.. . .+|...+.+.++..+...+..++.+
T Consensus 182 i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 182 VFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 432 1 3566555554444333333333333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.6e-10 Score=108.31 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=112.8
Q ss_pred hHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009833 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 378 (524)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (524)
....+....|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 98 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--------- 98 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34444555677778899999999999999999999999999999999999999988877777666555432
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 009833 379 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 458 (524)
+ +.+..+....+.+.+.+ ...+....++.|.+|++.|.++.++......++..++|.+.+.+.+..++...+.+
T Consensus 99 ---~--~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 ---Q--SIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ---c--cHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 1 11122222222222221 22234455667899999999999998888888899999999998888777655544
Q ss_pred HHHH-HHHHHHHHHhcccCC
Q 009833 459 SGWV-LIMSCFVFFLLPETK 477 (524)
Q Consensus 459 ~~~~-~~~~~~~~~~~~~~~ 477 (524)
.+++ .+..+..+...||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 4333 333333444556554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=106.43 Aligned_cols=160 Identities=13% Similarity=0.012 Sum_probs=108.6
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 302 AIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
.+....|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 91 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------ 91 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------------
Confidence 33334455567899999999999999999999999999999999999999988877666665554432
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGW 461 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (524)
. +.+...+...+.+.+.+ ...+....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+.....
T Consensus 92 ~--~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~ 168 (401)
T PRK11043 92 E--SAAQLLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFA 168 (401)
T ss_pred c--CHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 1 11112222222222111 11223344567889998888888888888889999999999999988887765554444
Q ss_pred HHHHHHHHHHhcccC
Q 009833 462 VLIMSCFVFFLLPET 476 (524)
Q Consensus 462 ~~~~~~~~~~~~~~~ 476 (524)
..+...+..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 169 ITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHHHcCCC
Confidence 444444444444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=109.77 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=116.0
Q ss_pred HHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
.......|.+.+++|.+..+.+...+...++..++.++.|++.||+|||+.+..+.++..++...+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344456778888899999999999999999999999999999999999999998888777777666542
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH-
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS- 459 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~- 459 (524)
. ..+.......+.+.+.+ ...+....++.|.+|++.|+++.++.+....++..++|.+.+.+.+..++...+...
T Consensus 77 -~--~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 -Q--TIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred -c--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 1 11122222222222222 223444566789999999999999999999999999999999998887876555443
Q ss_pred HHHHHHHHHHHHhcccC
Q 009833 460 GWVLIMSCFVFFLLPET 476 (524)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (524)
....+..++..+..+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 153 LAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 33344444444555654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=113.87 Aligned_cols=145 Identities=13% Similarity=0.003 Sum_probs=104.8
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHH
Q 009833 313 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 392 (524)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (524)
+++++..+.+.+.+.+.++..++.++.|++.||+|+|+.+..+.++..++.++..... . ...+. ++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~-~~~~~-l~~ 136 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------G-GGIAL-VVF 136 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------H-cCchH-HHH
Confidence 4678888899999999999999999999999999999999888777666655543321 1 11112 222
Q ss_pred HHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHH
Q 009833 393 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-KFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 470 (524)
.-+..+.......|....+++|.+|++.|+++.++.+....+|..+++.+.+.+.+.. +|...+.+.++..+...+.+
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 2233333333445566677789999999999999999999999999999999998884 77755555444443333333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-10 Score=106.59 Aligned_cols=162 Identities=9% Similarity=-0.065 Sum_probs=111.2
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
...+....|.+.+++|.+..+.++..+.+.++..++++..|+++||+|||+++.........+.. ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~---------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD---------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence 34556677888889999999999999999999999999999999999998876544333322221 1111
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH-
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF- 458 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~- 458 (524)
.. +....++.-.+.+.+.+. .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+..
T Consensus 76 --~~-~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 76 --PF-NYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred --hc-cHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 01 112222222222222221 122233347889999999999999999999999999999999988888866655
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 009833 459 SGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~ 477 (524)
+++..+..++.++.+||.+
T Consensus 151 ~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4445555555666677643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=105.45 Aligned_cols=147 Identities=11% Similarity=-0.014 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHH-HHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 287 IAVALQIFQQCTGINAIMFYAPV-LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+...+..+..+.....+..+.|. +.+++|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34555555556666777788885 66789999999999999999999999999999999999999999988888777766
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
+... .. ..+...+...+.+.+ .... +....++.|.+|+++|+.+.++......+|..+++.+.+.
T Consensus 84 ~~~~------------~~-~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 84 AGLA------------VQ-SYSVLLLLRLFIGIA-GGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHH------------hh-hHHHHHHHHHHHHHh-chhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6543 10 111222222222222 2222 2344566899999999999999988887887777777666
Q ss_pred HHh
Q 009833 446 MLC 448 (524)
Q Consensus 446 ~~~ 448 (524)
+..
T Consensus 149 l~~ 151 (366)
T TIGR00886 149 IIG 151 (366)
T ss_pred HHH
Confidence 554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-10 Score=109.00 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=119.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+..+.|.+.+...+...++.++.|++.||+|||+.+.++.++.+++..+...+++.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888878888999999999999999887777777
Q ss_pred hhhhccCCCCCcchhHHH-HHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH
Q 009833 157 LFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
.+..+..+++.++...+. .+....+|..+++.+ .+.+.+..||+..|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l---~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL---AGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh---HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 788888888888777665 667889999999998 556666678999999988887776655
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-10 Score=108.19 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=127.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhH--HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRR--LTMLIAGIFFIAGVAFNVA--------AQNLAMLIVGRILLGC 146 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~r~l~G~ 146 (524)
|++..+...+.-+..+..++|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-++.|+
T Consensus 313 g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~ 392 (477)
T PF11700_consen 313 GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGL 392 (477)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999998888776666655 6788899999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 147 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 147 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
..|..++...++.+|..|+++.+..+|++....-....+||++.+.+..... +-|+.+....++.++.+++.++++.
T Consensus 393 ~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 393 FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999555544442 3788888777777777777666655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=89.99 Aligned_cols=344 Identities=13% Similarity=0.032 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--------h-------hHHHHHHHHHHHHhhh
Q 009833 84 QLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA--------Q-------NLAMLIVGRILLGCGV 148 (524)
Q Consensus 84 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------~-------~~~~l~~~r~l~G~~~ 148 (524)
+...-.-.+..++.++..|.+.||..|.+++..+.+..-++..+.+.. . .+..+++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 333344455667788889999999999999887777644433332211 1 1122222222222222
Q ss_pred hhhh-hhhhhhhhccC------CCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-h
Q 009833 149 GFAN-QAVPLFLSEIA------PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-S 220 (524)
Q Consensus 149 g~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~ 220 (524)
-... ....+.=.||. +++.+.+.++...-.--+.-+++|++ .+.+....+.+....+.+...++..++ .
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~---vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF---VGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11222224553 23445666677766777888999998 555555567888888777777777665 3
Q ss_pred hcc----cCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHH
Q 009833 221 LLV----TDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQ 296 (524)
Q Consensus 221 ~~~----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
+++ ...| .+..+++.++.+...+.. ...+.+.+....+...+.-++....|+..++.+...+-+-..++ +
T Consensus 198 ~~l~~VY~~~P-~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y 271 (432)
T PF06963_consen 198 FLLARVYNSVP-ALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL----Y 271 (432)
T ss_pred HHHHHHHHhCh-HhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----H
Confidence 322 1222 222222222111000000 00000011111111111122234566666666653332222222 2
Q ss_pred hhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 009833 297 CTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376 (524)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (524)
+. ...+...+..|+...|+++...+..-....+.++.+.++..++.+|+|..+.-.++......++.+.......+...
T Consensus 272 ~T-VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 272 FT-VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred HH-HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 22234445566677799999999999999999999999999999999988887777776665555444333221110
Q ss_pred CCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 377 HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
. .......++......=..-.++--....++.|..|+++||...|+-+..+++...+.-.+
T Consensus 351 ~-----~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 351 F-----SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred c-----hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 111111122111111111122222334556899999999999999999888776554433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-10 Score=109.35 Aligned_cols=140 Identities=18% Similarity=0.293 Sum_probs=126.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|.+....|++.+++.+|.++++++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
+.+.+..|++.|||++++++.....+..+|.++ .+.+.+.+|-+..+.+.++..++..++
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll---~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLL---WGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 555555678888888877655555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=102.87 Aligned_cols=151 Identities=10% Similarity=-0.049 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHH-hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 009833 284 QLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362 (524)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 362 (524)
+.++...+.+...+..-+.+....+.+.+ ++|++..+.+++.++..+...+.++..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44565666666555555555555556555 69999999999999999999999999999999999999998888887776
Q ss_pred HHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009833 363 QTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQA 442 (524)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~ 442 (524)
.+...+.... ..++....++.-.+.+.+ +.. .+.....+++.+|+++||++.|+....+++|..+++.+
T Consensus 114 ~~~~~~a~~~---------~~~s~~~lli~r~l~Gig-g~~-f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 114 CVWLGIAVQN---------PNTPFGIFIVIALLCGFA-GAN-FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHcc---------cCCCHHHHHHHHHHHHHH-HHh-HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 6655542100 001111222222222222 222 23445566899999999999999977777777666555
Q ss_pred HHH
Q 009833 443 FLS 445 (524)
Q Consensus 443 ~~~ 445 (524)
.+.
T Consensus 183 ~p~ 185 (462)
T PRK15034 183 APL 185 (462)
T ss_pred HHH
Confidence 544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=104.12 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=107.8
Q ss_pred cCCcchhHHHHHHHH-HHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhhhh
Q 009833 77 KYDNQGLQLFTSSLY-LAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA------AQNLAMLIVGRILLGCGVG 149 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~-l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g 149 (524)
|++.+++|++.+... .+..++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 999999999988876 466778899999999999999998877766443332221 1233444555667777788
Q ss_pred hhhhhhhhhhhccCCC-CCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH
Q 009833 150 FANQAVPLFLSEIAPT-RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 150 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
...+...+.+.+..++ +++++.+++.+...++|..++|.+ .+.+.+..||+..|++.+++.++..++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~---~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI---AGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 8888888887777776 789999999999999999999999 445555678999999888776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=110.17 Aligned_cols=138 Identities=22% Similarity=0.143 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 009833 85 LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNL--AMLIVGRILLGCGVGFANQAVPLFLSEI 162 (524)
Q Consensus 85 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 162 (524)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345556777888999999999999999999999999888887776543 5555667777888888888899999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCCh
Q 009833 163 APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 227 (524)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 227 (524)
+|.+.|+.++++.+....+|.+++|.+.. . ...++..++++.++..++..++.+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L----GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H----HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999854 2 224577788888888888777777889864
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=103.91 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=118.7
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc-----Cchh-HHHHHHHHHHHHH
Q 009833 290 ALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-----GRRM-LLLEAGIQMFLSQ 363 (524)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~r~-~~~~~~~~~~~~~ 363 (524)
...++.+.........-+|.++++.|++.++.+++...... .+..++.|+++||+ |||| .+..+.+..+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34445566667777888999999999999999988666554 57889999999999 7765 6776666666666
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 443 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 443 (524)
..+.... .....+......++. ..+.....+....++.|..|+++|+++.++......++..+++.+.
T Consensus 83 ~~l~~~~-----------~~~~~~~l~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 83 AAMAFCP-----------PHAALWPLAGLAVLV-AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHhcC-----------ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 5554321 111222222222222 2333344456677788999999999999999998899999999998
Q ss_pred HHHHhh-hchhhHHHHHHHHHHHHHHHHHhcccCC
Q 009833 444 LSMLCH-FKFGIFLFFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 444 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (524)
+.+.+. .+|...+.+.+...+...+..+..+|++
T Consensus 151 ~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 151 LWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 888885 4777666555544444444445556543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=102.21 Aligned_cols=149 Identities=5% Similarity=-0.090 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 009833 287 IAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 366 (524)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 366 (524)
+.+++.++.............|.+.+++|.+..+.+++.+...++..++++..|++.||+|||+.+..+..+..++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34444444444444555677788888899999999999999999999999999999999999999999988888877665
Q ss_pred HHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009833 367 AIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSM 446 (524)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 446 (524)
.... ..++.+..+....+.+.+.+... +....++.+..|++.+++..++.+....+|..+++.+.+.+
T Consensus 86 ~~~~-----------~~~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 86 WPAA-----------EIMNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHH-----------hhccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 11112222222233333332222 23334556788889999999999999999999999998877
Q ss_pred H
Q 009833 447 L 447 (524)
Q Consensus 447 ~ 447 (524)
.
T Consensus 154 ~ 154 (410)
T TIGR00885 154 I 154 (410)
T ss_pred H
Confidence 5
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-09 Score=97.16 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++...+.+...+...+.+....+.+-+++|+|+.+.+++.++..+.+.+.++..|.+.||+|.|++...+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555666789999999999999999999999999999999999999999988888887777
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
+.+... .++.+..+.+ .++.+..+ +...+...++++.+|++++|.+.|+.. .+++|..+...+.+.
T Consensus 96 ~~~a~~-----------~~~~~~ll~~-gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 96 LAFAVT-----------YPSTWQLLVI-GLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHcc-----------CCchHHHHHH-HHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 776531 1111222222 22222222 222455667789999999999999988 999999999998888
Q ss_pred HHhhhc---hh-hHHHHHHHHHHHHHHHHHhcc
Q 009833 446 MLCHFK---FG-IFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 446 ~~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~ 474 (524)
+....+ +. ...++.....+..+..++...
T Consensus 162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888877 44 344444444444555555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-09 Score=105.32 Aligned_cols=166 Identities=11% Similarity=0.055 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQ 363 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~ 363 (524)
++..++..++....++....+++.++ +++|++..+++..............+++|+++|| +|||+.+..+.++..++.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 45555555566666777777888777 5699998888777776665555556789999999 599999999888888776
Q ss_pred HHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchh--hhhhhHHHHHHHHHHHHHHHH
Q 009833 364 TVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET--RSAGQSVTVCVNLLFTFVIAQ 441 (524)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~i~~~ 441 (524)
.++... .. ......+...+.+.+.+. ..+....+..|.+|++. +..+.++.+...++|..++|.
T Consensus 103 ~l~~~~------------~~-~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 103 ALVAWS------------GH-DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHh------------cc-cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 655532 11 111222222222222222 23454566789887643 456788889999999999999
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHH
Q 009833 442 AFLSMLCHFKFGIFLFFSGWVLIM 465 (524)
Q Consensus 442 ~~~~~~~~~g~~~~~~~~~~~~~~ 465 (524)
+.+++.+..||...+...++..+.
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999988887666665543333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=104.65 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=88.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF-N---VAAQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~-~---~~~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|.+..+.++....+.++..++.+++|+++||+|||+++..+.++..+..+. . ...+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999887765544332221 1 112344445555666777777777
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhcccCCCCcch
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQWGW 202 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~~w 202 (524)
+....++.|.+|+++|+..+++... +..++..++|.+ .+.+.+..|+
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~---~g~i~~~~g~ 397 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAI---STWLIHVTGD 397 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHH---HHHHHHhcCC
Confidence 7777889999999999999998544 444456678877 4444444454
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-10 Score=107.02 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
...+++....+..--+.+..-.+..-+.++.+.+..|++.....+...+++++.|++.||++|++++.++..+-.++.+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 44455555555555555555555666668999999999999999999999999999999999999999888877777776
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
..+. ...+.+++.=.+.+....+..|+...+++|.+|.++|+++.++.+....+|+.+|-.....
T Consensus 115 ~~fs---------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 115 SGFS---------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred HHHH---------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 6653 2334445555555666667778888899999999999999999999999998888777777
Q ss_pred HHhhhc-hh-hHHHHHHHHHHHHHHHHHhcccCCCCC
Q 009833 446 MLCHFK-FG-IFLFFSGWVLIMSCFVFFLLPETKNVP 480 (524)
Q Consensus 446 ~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (524)
+.+..+ |+ .+...+++.++++++..++.+|..++.
T Consensus 180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred eccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 777666 44 444555555666666666777665443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=111.03 Aligned_cols=163 Identities=10% Similarity=-0.088 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 009833 287 IAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 366 (524)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 366 (524)
+...+..+.+..........++.+-++++++..+.|++.+.+.++..++.++.+++.||.+||+.+.++.++++++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33444444444444455556677777899999999999999999999999999999999999999999999999888877
Q ss_pred HHHHhhhc-cCC---------------------------------Cccchh--hHHHHHHHHHHHHHhhhccccccccce
Q 009833 367 AIILGIKV-KDH---------------------------------SEDLHT--GFAVLVVIMICTFISAFAWSWGPLGWL 410 (524)
Q Consensus 367 ~~~~~~~~-~~~---------------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
++.-.... +.. .+.... ...+..+++.-+..+.......++...
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 65421110 000 000000 112233333344444444455567788
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 411 IPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 411 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
++.|.+|++.|+...++.+....+|..+++.+.+.+.+.
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 889999999999999999999999999999998887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-09 Score=97.45 Aligned_cols=129 Identities=8% Similarity=0.017 Sum_probs=103.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++... ..+-++.|++.+..+|...
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~ 252 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIF 252 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998888888887766665554333 3456689999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHH
Q 009833 157 LFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI 211 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 211 (524)
+...+..|++ .+.+.++. ....+|.++.|++ .+.+.|..|.+..|++..+
T Consensus 253 s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l---~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 253 SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLL---QGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHH---HHHHHHhccchHHHHHHHH
Confidence 9998888764 45666665 5566899999988 5556666778888774433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=103.33 Aligned_cols=145 Identities=12% Similarity=-0.035 Sum_probs=92.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV--A--AQNLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~~ 152 (524)
|.+..+.++..+...++..+++++.|+++||+|||+++.++.++.++..+... . .++....+..-.+.+++.+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 88888999999998888899999999999999999988776665443332221 1 1222322222233333444444
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHH-HHHHHHHHHhhcccCCCCcc-hHHHHHhhHHHHHHHHHHhhcccC
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
+....++.|++|++.|+.++|+.+....+ .....|.+..... ..| |...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~----~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK----SIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 55667889999999999999998765443 2334555533222 123 555666666655555555444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=99.52 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=144.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccccchhhhh-hhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHh
Q 009833 27 VSCIMAATGGLMFGYDVGVSGGVTAMPHFLK-KFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105 (524)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 105 (524)
...++++-..+.+|.+..+.-. ..+.. ++ |++..++.++.-...+..+++++++|++.
T Consensus 254 i~~FLiA~~~~~DGv~til~~~----~~fg~~~~-----------------gls~~~lll~g~~~~vvA~lg~ii~g~Ld 312 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMG----GVFGAADL-----------------GLSSTELLLIGIALSVVAALGAIIAGFLD 312 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHH----HHHHHHHc-----------------CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556677776655321 23433 55 99999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHH
Q 009833 106 RRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILF 185 (524)
Q Consensus 106 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 185 (524)
||+|.|+++..+++++.+.++...+...-..+.++-.+.|.+.|+.+..+.++.++..|+++-++.+|++....-.+..+
T Consensus 313 ~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~ 392 (438)
T COG2270 313 ERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL 392 (438)
T ss_pred HHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH
Confidence 99999999999999999999888887777777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCC
Q 009833 186 ANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDT 226 (524)
Q Consensus 186 ~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 226 (524)
||.+-.......+ +-|.-+....++..+.+++.+.+|+.
T Consensus 393 gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 393 GPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999655555544 36777766666666666666667654
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=96.98 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=119.7
Q ss_pred HHHHhHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 302 AIMFYAPVLFKTLGFGGSA-SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
...+..|++.+++|++..+ .+.+...+..+..+..+.+|+++||+|.|+++..+.+.-.+..++.++..
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455677777899999999 99999999999999999999999999999999988887777777766531
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchh---hHHH
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFG---IFLF 457 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~---~~~~ 457 (524)
......+.-++++.+-+..+ ....++...+|++.|+++.|+.+....+|.++++++.+. ....+|. ....
T Consensus 114 ----Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 114 ----SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 22223333333333333333 445667789999999999999999999999999999998 5555644 4445
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 009833 458 FSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~ 476 (524)
+.......+++..+++|..
T Consensus 187 Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5555666667777788843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=101.87 Aligned_cols=146 Identities=17% Similarity=0.226 Sum_probs=124.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHH-HHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHh-hcccC
Q 009833 157 LFLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 225 (524)
.|+++.+|+|..++...+ .+.+.++|..+.+.+ .+.+.|+.|.+..|++.+.+.++..++. +.+++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~---~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL---AGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh---HHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999999877777666 467888898888888 7777888999999999888877766664 44544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-09 Score=104.17 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=98.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhhhhhhh
Q 009833 79 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-QNLAMLIVGRILLGCGVGFANQAVPL 157 (524)
Q Consensus 79 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 157 (524)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999999888888777665 46677788889999999999999999
Q ss_pred hhhccCC-------CCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 009833 158 FLSEIAP-------TRIRGGLNILFQLNVTIGILFANLVNYGT 193 (524)
Q Consensus 158 ~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~~~~~~ 193 (524)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999999885543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-09 Score=117.04 Aligned_cols=137 Identities=14% Similarity=0.057 Sum_probs=117.4
Q ss_pred cCCcc-hhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQ-GLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~-~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.+.. +.+++.+...++.+++++++|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888 99999999999999999999999999999999999999988888888888899999999999999999999999
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHH
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 215 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 215 (524)
.+++.+.+|+++||+++++.+....+|.++++.++..... ..+++...|++.+.+.++
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777554433 123566666665554443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=100.25 Aligned_cols=166 Identities=12% Similarity=0.081 Sum_probs=103.8
Q ss_pred hHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009833 299 GINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHS 378 (524)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (524)
..+.+..+.+.+.+++|++..+.+.+...... .....++.|++.||+|+|+++.++.+...++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~----- 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV----- 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 34567778888888899999888887765333 334566789999999999999999999888888777642100
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 009833 379 EDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 458 (524)
.....+...+..++.+.+.+.. .+.....+.+.+| +.||.+.|+......+|+.+.+.+...+........+++.
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~-~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLF-DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0012222222222222222211 1222333467777 6799999999999999998766666555543222344445
Q ss_pred HHHHHHHHHHHHHhccc
Q 009833 459 SGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (524)
+.+..+.+++...+++.
T Consensus 191 ~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 191 MSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHhheeC
Confidence 55555555555555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=112.44 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=115.7
Q ss_pred hhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCC-CcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHH
Q 009833 275 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFG-GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLL 352 (524)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~ 352 (524)
.+++++.++++++..++..+........+..+..+.+.. .+.+ ....++..+...+..++.+++.|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 355666666655555554444332222223232222221 2221 13456677778888899999999999999999976
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHH
Q 009833 353 LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN 432 (524)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (524)
........+......... ...+.+..++ ..+..+.......|....++.+.+|++.++.++|+.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~-----------~~~s~~~l~~-~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~ 153 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGF-----------HLNSVPLLFA-ALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGT 153 (1140)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHhhHHHHHH-HHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence 442222222222111111 1112222232 3333333334445777788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcccC
Q 009833 433 LLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 433 ~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
.++..++|.+.|.+.+..++...++..++..+.++++.++++++
T Consensus 154 ~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 154 FIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999998887766655555555555555555554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=102.75 Aligned_cols=145 Identities=15% Similarity=0.051 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhc
Q 009833 322 LYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
+...+.+.+++++|++..++++||+|||..+.++.+...++.++...... .+.....++.=++.+...+
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-----------~~~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-----------APSFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHhH
Confidence 44566778999999999999999999999998888887777777666532 1222223332233332322
Q ss_pred cccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhh-chhhHHHHHHHHHHHHHHHHHhcccCCC
Q 009833 402 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF-LSMLCHF-KFGIFLFFSGWVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 402 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (524)
... .....+..|..|++.||....+......+|..++..+. ..+.... .|...+.+..+..+...+...++||..+
T Consensus 132 l~~-~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 132 LST-GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHH-HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 222 34456778999999999998888888888887774443 3333332 2555555555656666677778888755
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=95.34 Aligned_cols=116 Identities=15% Similarity=-0.037 Sum_probs=91.1
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHH
Q 009833 317 GGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTF 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (524)
+...+|.+-+.+++..++.++..|.++||+|||.++.++.+..++..++.+.. .....++..=+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---------------~~F~afv~aR~l 130 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---------------RNFAAFVLARFL 130 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHh
Confidence 44568889999999999999999999999999999999888888866666543 122222222222
Q ss_pred HhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009833 397 ISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 448 (524)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 448 (524)
++.+ -+...+..++++|+++++.|+.+++.......+|.++||.+.|++..
T Consensus 131 ~Gi~-kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 131 GGIF-KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhc-cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3333 33345667888999999999999999999999999999999999887
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-09 Score=99.47 Aligned_cols=150 Identities=13% Similarity=-0.009 Sum_probs=101.9
Q ss_pred HHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 009833 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380 (524)
Q Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (524)
..+.+++=-.+++.+-.+.--|...+..-.+.++.-++.+++.+|+|+-+++..+..+..+=++.+..+
T Consensus 388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------
Confidence 333444433457777777777777777778888999999999999999999988877776666655544
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhchhh-HHHH
Q 009833 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCV-NLLFTFVIAQAFLSMLCHFKFGI-FLFF 458 (524)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~g~~~-~~~~ 458 (524)
. ++|..+.+=.+-+......+. ....|++...|++.+.++.++.... ..+|-.+|+.+.|.+.+..+... +.++
T Consensus 457 -~--n~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 457 -Q--NPWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIF 532 (618)
T ss_pred -c--CchheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHH
Confidence 2 333333333333444443333 3346778899999999999987765 45777888889998888887553 4444
Q ss_pred HHHHHHH
Q 009833 459 SGWVLIM 465 (524)
Q Consensus 459 ~~~~~~~ 465 (524)
++.+++.
T Consensus 533 giAcl~~ 539 (618)
T KOG3762|consen 533 GIACLVT 539 (618)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=102.98 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=138.4
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhh--hHHHHHHHHHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLG--RRLTMLIAGIFFIAGVAF 127 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~l~~~~~l~~~~~~~ 127 (524)
..+|.+.++. +.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++.+.
T Consensus 319 ~~l~~~~~~~-----------------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 319 VYLPSYAKSL-----------------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHhhc-----------------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 5667777777 999999999999999999999999999999988 556778888889999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcc-hHHHH
Q 009833 128 NVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-WRISL 206 (524)
Q Consensus 128 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f 206 (524)
++++++++.+...-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++ .+.+.+..+ |...|
T Consensus 382 ~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi---ag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 382 LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI---AGLLYDITGNYDHAF 458 (509)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc---ceeeeeccCCeeeeh
Confidence 99999999999999999999999988888899999999999999999999999999999999 445555444 99999
Q ss_pred HhhHHHHHHHHHHhhccc
Q 009833 207 GLAGIPAALLTVGSLLVT 224 (524)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~ 224 (524)
+..++..++..+.++..+
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 999998888887776665
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=97.61 Aligned_cols=162 Identities=13% Similarity=0.103 Sum_probs=105.1
Q ss_pred HHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc-----CchhHH-HHHHHHHHHHHHHHHHHHhhhc
Q 009833 301 NAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-----GRRMLL-LEAGIQMFLSQTVIAIILGIKV 374 (524)
Q Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (524)
.......|.+.++.|++..+.+..... .+...+ .++.|++.||+ ||||.+ ..+.+...+....+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence 344556788899999999999888654 444444 88999999997 788864 444554444444443221
Q ss_pred cCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 009833 375 KDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK--- 451 (524)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--- 451 (524)
.....+.......+ .........+....++.|.+|+++|+.+.++......+|..+++.+.+.+....+
T Consensus 79 -------~~~~l~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 -------PSTDLPLLAGLAFL-IAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred -------cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11122222222222 2222223334556677899999999999999999999999999999998888877
Q ss_pred -----hhhHHHHHHHHHHHHHHHHH-hcccC
Q 009833 452 -----FGIFLFFSGWVLIMSCFVFF-LLPET 476 (524)
Q Consensus 452 -----~~~~~~~~~~~~~~~~~~~~-~~~~~ 476 (524)
|...+.+.++..+.+++..+ ..+|+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 77666666655555444433 34553
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-08 Score=96.09 Aligned_cols=150 Identities=6% Similarity=-0.083 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++.+.+.++.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444555555555666777888888889999999999999999999999999999999999999999998888888766
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
+.... ..++.+..+....+.+.+.+... +....++.|..|++.|....++.+....+|..+++.+.+.
T Consensus 108 ~~~~~-----------~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 108 FWPAA-----------EIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHH-----------hcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211 11122222333333333333222 3334445676666666667889999999999999888765
Q ss_pred HH
Q 009833 446 ML 447 (524)
Q Consensus 446 ~~ 447 (524)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 44
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-07 Score=94.94 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=117.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQ--------NLAMLIVGRILLGCG 147 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~--------~~~~l~~~r~l~G~~ 147 (524)
|++.++...+...+....-+..+++|+++|+ +||++.++++.++..+|.++.+++. .....+++-.+..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999995 9999999999999999998887642 123466788889999
Q ss_pred hhhhhhhhhhhhhccCCCCC---cchhHHHHHHHHHHHHHHHHHHHhhcccC----CCCcchHHHHHhhHHHHHHHHHHh
Q 009833 148 VGFANQAVPLFLSEIAPTRI---RGGLNILFQLNVTIGILFANLVNYGTSHI----KSQWGWRISLGLAGIPAALLTVGS 220 (524)
Q Consensus 148 ~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~~ 220 (524)
.|+.-+...+...|.+++++ |...+.++..+.++|..+++++......- .+..+|...|.+.++..++.+++.
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997643 66788888999999999998884443321 123479999999888877766653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=86.27 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccc
Q 009833 326 VITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWG 405 (524)
Q Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (524)
+...++..++.+..+++.||++||+.+..+.....++.+..... . ..+.......+.+...+ ...
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~g~~~~-~~~ 69 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------S--NITVLIIARFLQGFGAA-FAL 69 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------c--cHHHHHHHHHHHHHHHH-HHH
Confidence 34567788899999999999999999887777666665544432 1 11222222222222222 223
Q ss_pred cccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHHHHHhcc
Q 009833 406 PLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS-GWVLIMSCFVFFLLP 474 (524)
Q Consensus 406 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 474 (524)
+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+... ....+..+...+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455566789999999999999999999999999999999998887775444443 333333334444333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=94.44 Aligned_cols=139 Identities=28% Similarity=0.377 Sum_probs=115.1
Q ss_pred cCCc--chhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhhhhhh
Q 009833 77 KYDN--QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQN--LAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~--~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~ 152 (524)
+.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 112 (338)
T COG0477 33 SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLL 112 (338)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHH
Confidence 4444 57899999999999999999999999999999888888776677777777776 8999999999999999999
Q ss_pred hhhhhhhhccCCC-CCcchhHHHHHH-HHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHH
Q 009833 153 QAVPLFLSEIAPT-RIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALL 216 (524)
Q Consensus 153 ~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 216 (524)
+...+++.|+.|+ ++|+...+.... ...+|.++++.++...... ...+||..|.+........
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 9999999999988 678999998888 5888888888775555444 5568999776666655443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=95.08 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=93.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.++..+.++..... .-++.|++.+..++..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 89999999999999999999999999999999 567777788888888877777665433332 4578899999999888
Q ss_pred hhhhhccCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhcc
Q 009833 156 PLFLSEIAP-TRIRGGLNILFQLNVTIGILFANLVNYGTS 194 (524)
Q Consensus 156 ~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~ 194 (524)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765554 456788899988888888899998854443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=92.12 Aligned_cols=147 Identities=16% Similarity=0.297 Sum_probs=117.1
Q ss_pred c-CCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhHHHH----HHHHHHHHhhhhh
Q 009833 77 K-YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-QNLAML----IVGRILLGCGVGF 150 (524)
Q Consensus 77 ~-~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l----~~~r~l~G~~~g~ 150 (524)
| .+....+.+.+...++-+..-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+.. ++...++|+..+.
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~ 317 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGL 317 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHH
Confidence 5 677788888888889999999999999999999999999999999988888877 554443 3345679999999
Q ss_pred hhhhhhhhhhccCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhcccCCCCc------chHHHHHhhHHHHHHHHHH-hhc
Q 009833 151 ANQAVPLFLSEIAPTRIRGGLNILFQL-NVTIGILFANLVNYGTSHIKSQW------GWRISLGLAGIPAALLTVG-SLL 222 (524)
Q Consensus 151 ~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~~~~~~~~~~~~~~~~------~wr~~f~~~~~~~~~~~~~-~~~ 222 (524)
...++..++.+.+|++.|+++.+++.+ ..++|..+|..+++ .+.+++ .|...+.+.+++.++..++ .++
T Consensus 318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG---~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG---WLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999876 46899999999944 444333 4556677777766666555 344
Q ss_pred ccCC
Q 009833 223 VTDT 226 (524)
Q Consensus 223 ~~e~ 226 (524)
.+|+
T Consensus 395 fk~~ 398 (400)
T PF03825_consen 395 FKPK 398 (400)
T ss_pred ccCC
Confidence 5543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-09 Score=95.75 Aligned_cols=125 Identities=15% Similarity=0.235 Sum_probs=98.8
Q ss_pred ccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhh----hhhHHHH-HHHHHHHHHH
Q 009833 50 TAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR----LGRRLTM-LIAGIFFIAG 124 (524)
Q Consensus 50 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~l-~~~~~l~~~~ 124 (524)
..+|++.++. |++....+.+--...+...+.+++.|..+|| |||||.+ ..+.....++
T Consensus 53 sy~tPyl~~l-----------------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~ 115 (498)
T KOG0637|consen 53 SYLTPYLQSL-----------------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS 115 (498)
T ss_pred ccccHHHHHc-----------------CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence 4557888888 9999999999888899999999999999995 9987655 4555666677
Q ss_pred HHHHHhhhhH-----------------HHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcch-hHHHHHHHHHHHHHHH
Q 009833 125 VAFNVAAQNL-----------------AMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG-LNILFQLNVTIGILFA 186 (524)
Q Consensus 125 ~~~~~~~~~~-----------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~~~ 186 (524)
.++..++.++ ..++++--+.=++.-.....+-+++.|...++++.+ +++.+....++|.++|
T Consensus 116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 7777776543 344555555666777788899999999997776666 9999999999999999
Q ss_pred HHHHh
Q 009833 187 NLVNY 191 (524)
Q Consensus 187 ~~~~~ 191 (524)
..++.
T Consensus 196 Y~~g~ 200 (498)
T KOG0637|consen 196 YALGS 200 (498)
T ss_pred eeccc
Confidence 88743
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-05 Score=77.77 Aligned_cols=115 Identities=9% Similarity=0.008 Sum_probs=87.8
Q ss_pred cchhHHHHHHHHHHHHHH-HHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----h----------------------
Q 009833 80 NQGLQLFTSSLYLAGLTA-TFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----Q---------------------- 132 (524)
Q Consensus 80 ~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~---------------------- 132 (524)
.+.+.++-+...+...+. .++.+++++|++|++++-+....+....+++++. +
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 367889988887777666 8999999999999999887777766666665544 0
Q ss_pred -----hHHHHHHHHHHHHhhhhhhhh-hhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcc
Q 009833 133 -----NLAMLIVGRILLGCGVGFANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTS 194 (524)
Q Consensus 133 -----~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~ 194 (524)
+.|...+.-+...+-...... ....++.|.++.+|-.|..+++..+.++|.++++.+.....
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444445555555555555 77889999999999999999999999999999998855544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-07 Score=86.74 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccC
Q 009833 84 QLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIA 163 (524)
Q Consensus 84 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 163 (524)
+.+.-+-.+-..+..+.+.+..+|+..+.=+....+++.++.++.+++++.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666677777888889887554456666788889999999999999999999999999998888887655 45
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhc-ccC
Q 009833 164 PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL-VTD 225 (524)
Q Consensus 164 ~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 225 (524)
++ ...+-+..+.+.+.++|+..-..+.. -..+-|..+++...+.++..+..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 35677888888888888876433333 1234577777777666655555444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=91.60 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc----ccCchhHHHHH-HHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD----KVGRRMLLLEA-GIQMF 360 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~r~~~~~~-~~~~~ 360 (524)
+.........++ .+.....+.+.+++..|.+....+.+.....+.+++..++.|+++| |+|||+..+.. .+...
T Consensus 7 i~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 7 LRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 333333333333 3455666777788999999999999999999999999999999999 59999988765 33333
Q ss_pred HHHHHHHHHHhhh-ccCCC-ccchhhH-HHHHHHHHHHHHhhhccccccccceeecccCCchhh--hhhhHHHHHHHHHH
Q 009833 361 LSQTVIAIILGIK-VKDHS-EDLHTGF-AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETR--SAGQSVTVCVNLLF 435 (524)
Q Consensus 361 ~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~ 435 (524)
+++.++....... ...+. ....... .+..+....+..........|. .++++|..|+++| +.+.++.+....+|
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 4334333321000 00000 0000011 1122222222233333333333 5677899998865 57889989999999
Q ss_pred HHHHHHHHHHH
Q 009833 436 TFVIAQAFLSM 446 (524)
Q Consensus 436 ~~i~~~~~~~~ 446 (524)
+.+++.+.+..
T Consensus 165 ~ilg~~~g~~~ 175 (477)
T TIGR01301 165 NVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHH
Confidence 99988887754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=94.00 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=95.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555677888999999999999999999999999888887776643 6777778889999999999999
Q ss_pred hhhhhhccCCCC-------CcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 155 VPLFLSEIAPTR-------IRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 155 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
..++.+|..|.+ ++|...+..+....+|..+|+.+...
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 35888999999999999998887543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=82.61 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=102.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIA-GIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~-~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|+|+...+.+.+....-.++.+++.|.++||+|++-..+.+ ++.+.++.....+ +++.=.++..+.|++........
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcsl 373 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSL 373 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999766554 4444444444444 33333456677888877665556
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHH-HHHHH
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGI-PAALL 216 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~-~~~~~ 216 (524)
...++-..|+++.|++.+..+...++|..+.|++++++..-...+.|--.|.+... +++..
T Consensus 374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 67778888889999999999999999999999996655544433456555554433 43333
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=85.16 Aligned_cols=340 Identities=9% Similarity=0.037 Sum_probs=201.8
Q ss_pred cCCcchhH-HHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQ-LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|++..|+. -+.=...-.+.+.-++.=.+.|-.-.|++++.-.+......++.-+.++.+.+=+.-++.|...+ ...+-
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAY 115 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAY 115 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhh
Confidence 66666543 22223344455566666678999999999998888888888888899999999999999999876 66688
Q ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCC
Q 009833 156 PLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGR 235 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 235 (524)
++++-+..+++++.++.+...+..-.|...|..++-++... +..++...-.+.-....+..++.+++|..+|....+.+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 89999999999999999998888877777777764433222 12334444444444444455556778877765555444
Q ss_pred hhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcC
Q 009833 236 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLG 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 315 (524)
.++.. ..+.+..+. +.+..+.. ...-..-...+.+..+++. +....+.+.....+++.+.+|...+.++..
T Consensus 195 ~~~~~--v~~~e~~~~-~~~~~~~l--~~~~~~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~ 265 (433)
T KOG3810|consen 195 EDKIS--VGDLEEMNP-QASYMSYL--RGAFVLLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEVA 265 (433)
T ss_pred cccce--eccchhcCc-cchhhHHH--HHHHHHHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhhC
Confidence 43211 111111111 00000000 0000111122333444444 556667777777788888888888887753
Q ss_pred CC--CcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHH
Q 009833 316 FG--GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMI 393 (524)
Q Consensus 316 ~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (524)
-. ....|..=++..+.+.++.+..|.+.-.+.|+.-+.++......+.+++... ..+..|+.....
T Consensus 266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~------------~t~~Iw~~Ya~y 333 (433)
T KOG3810|consen 266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA------------QTQHIWVCYAGY 333 (433)
T ss_pred CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh------------cccceehhhhhH
Confidence 11 1224555566677788888889988666666543333322222222222211 344455555555
Q ss_pred HHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009833 394 CTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 440 (524)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~ 440 (524)
.++...+..... +...-+++....+.-|...|+..++.-+...+-.
T Consensus 334 vlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT 379 (433)
T KOG3810|consen 334 VLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILT 379 (433)
T ss_pred HHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence 666555554433 2222234555667778888887776655544433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-08 Score=95.87 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=90.7
Q ss_pred HhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhh
Q 009833 305 FYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG 384 (524)
Q Consensus 305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (524)
.-++.+..+.|-+ ....++.....+...++.++.|+++|.+|||..++.+.++..++.++.+.. +
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------------~ 129 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------------Q 129 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--------------C
Confidence 3345666677765 556667777888999999999999999999999999988888888877643 1
Q ss_pred HHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 009833 385 FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFS 459 (524)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 459 (524)
+....+....+.+.+.+. ..+....++|..|.+.|..+.++.....-....+++.+...+..+.+|+..+.+.
T Consensus 130 ~~~~~iag~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 222233333333333222 2233445689999999988877666554444445666665555555555444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.7e-08 Score=93.45 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=110.9
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHH
Q 009833 313 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 392 (524)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (524)
++.++..+.+++.+....+.+++.+.++++.||+|.|+++..+.++.+++.++..+... ...+..+++
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------------hcchhhHHH
Confidence 36677888999999999999999999999999999999999999999888888877642 111222232
Q ss_pred HHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHH-HHHHHHHH
Q 009833 393 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH-FKFGIFLFFSGWV-LIMSCFVF 470 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~~~~~ 470 (524)
=++-+.+.+ ...|....+.++-.|+++|++..++.....++|.+++-++.|.+.+. .||...+++.+.. .+..++.+
T Consensus 135 R~lqGl~~g-~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQG-VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHh-HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 333333333 33456667778999999999999999999999999999999999998 7877555554444 44443333
Q ss_pred Hhc
Q 009833 471 FLL 473 (524)
Q Consensus 471 ~~~ 473 (524)
++.
T Consensus 214 ~~~ 216 (466)
T KOG2532|consen 214 LFY 216 (466)
T ss_pred HHh
Confidence 333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.9e-08 Score=87.07 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcc
Q 009833 90 LYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169 (524)
Q Consensus 90 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 169 (524)
..+...-|.++.+++.||+|||+.|..+.+++++..++...+.+-....+.-+..-++..+.+.+.+.|..|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566778899999999999999999999999999988777654333333333333444556778899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccC
Q 009833 170 GLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 225 (524)
Q Consensus 170 ~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 225 (524)
...|......-+|.++.|.++... .. .-..+..+.+...++..+...++|-
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~-e~----s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRA-EL----STSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHh-cc----ceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999996222 21 2234556667777777777777764
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=78.48 Aligned_cols=356 Identities=14% Similarity=0.037 Sum_probs=181.3
Q ss_pred HhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhh-----hh
Q 009833 34 TGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR-----RL 108 (524)
Q Consensus 34 l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~ 108 (524)
+.+...|...+..+ ++|.+.+.= |+|.++.+...-++.= .---+.|.++.| |+
T Consensus 38 ~LYllQGiP~GL~~---~iP~lL~ak-----------------~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~ 95 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG---AIPLLLQAK-----------------GVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRF 95 (510)
T ss_pred HHHHHcCCchhHhh---hhHHHhcCC-----------------CcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhh
Confidence 33566777877775 346776643 8888887765443321 223478899999 99
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHH
Q 009833 109 GRRLTML-IAGIFFIAGVAFNVA-----------AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176 (524)
Q Consensus 109 Grr~~l~-~~~~l~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 176 (524)
||||.-+ -+..+.+..+...+. .++...+...-++.-+.++..-.+.-.+.-....+++-|.+.....
T Consensus 96 GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~ 175 (510)
T KOG3574|consen 96 GRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQS 175 (510)
T ss_pred ccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHH
Confidence 9987532 233333333332222 2344445556677777778888888888888888999999999888
Q ss_pred HHHHHHHHHHHHHHhhcccCCC-------CcchH---------HHHHhhHHHHHHHHHHhhcccCChHHHHhcCChhHHH
Q 009833 177 LNVTIGILFANLVNYGTSHIKS-------QWGWR---------ISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGK 240 (524)
Q Consensus 177 ~~~~lG~~~~~~~~~~~~~~~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~ 240 (524)
.+...|..++..+ .-.+.+ ..+|. ...++.+.+.++.-.+..+..+++.. +.
T Consensus 176 Vg~~~GyfL~~~i---fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~-------~~-- 243 (510)
T KOG3574|consen 176 VGQTAGYFLGNVV---FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE-------SV-- 243 (510)
T ss_pred HHHhhhHHhhcce---eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch-------hh--
Confidence 8888888888766 222211 01121 12233333333333333333332210 00
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcc
Q 009833 241 AVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSA 320 (524)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 320 (524)
++| .+...++....++++++-+..+.+... ....=.++..-....+.-+-+.|++.++
T Consensus 244 ------------~~e------~~~~i~~~yk~l~~vLklk~v~~la~i----~lt~K~gf~a~da~t~LkLle~Gv~ke~ 301 (510)
T KOG3574|consen 244 ------------DEE------LELGIHESYKLLRDVLKLKSVRWLAGI----LLTGKLGFQAADALTSLKLLEHGVPKEE 301 (510)
T ss_pred ------------hhh------hhcCHHHHHHHHHHHHcCccHHHHHHH----HHHHHHHhhhhhhccchHHHHcCCChhH
Confidence 000 000001111234555555553322221 1112222333444455666788999888
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccC------chhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHH
Q 009833 321 SLYSTVITGAVNVLSTLVSIYSVDKVG------RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMIC 394 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (524)
.++...+..-.+++.....|++..... |+....+. ......++. ...+.....+...........+...
T Consensus 302 Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~---~~~~~t~Lv--~~~~~~~~~~G~~~~~~~il~i~~y 376 (510)
T KOG3574|consen 302 LALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLG---GGLVQTALV--WWTPTLGHSDGTFPRGYYILLITSY 376 (510)
T ss_pred heeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHH---HHHHHHHHH--hhhcccccCCCceeechHHHHHHHH
Confidence 776654444444454444444433211 11111111 111111111 1112222111001111112222222
Q ss_pred HHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 395 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
.+..++.........+.-+++.++...|+.+.+.|...++|+---..+..++.|..
T Consensus 377 ~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 377 AFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 22222222222233455578889999999999999999999877777777777643
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=83.48 Aligned_cols=167 Identities=13% Similarity=0.185 Sum_probs=112.5
Q ss_pred hhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 009833 297 CTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKD 376 (524)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (524)
....+.+..|.|.+-+++|++.++...+.....++..+| +..|.+.|++|.+.++.++.+...++...+........
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-- 91 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-- 91 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence 345678889999999999999999999988888888775 88899999999999999999988888887766542110
Q ss_pred CCccchhhHHHHHHHHHHHHHhhhcccc-ccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Q 009833 377 HSEDLHTGFAVLVVIMICTFISAFAWSW-GPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIF 455 (524)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~ 455 (524)
.....+ .++...+.++.+..+ .........+.+|. .||++.|+.-....+++.+...+...+.+.......
T Consensus 92 -----~~~~~~--~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fl 163 (250)
T PF06813_consen 92 -----PSLPVW--LMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFL 163 (250)
T ss_pred -----CccchH--HHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHH
Confidence 111122 222222233222222 12222222467885 799999999999999999988888887776434444
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 009833 456 LFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (524)
...+....+.+++...+++
T Consensus 164 l~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 164 LFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 4444444444444444444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.3e-07 Score=80.53 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhH
Q 009833 23 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS 102 (524)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 102 (524)
+..|.+.+...+-++.+....++ +|.+..|- |+|..+.|++.+...+.....++...
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~W------LP~ili~~-----------------G~sa~~aG~llsl~~l~~~~~~ll~P 264 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGW------LPAILIDR-----------------GLSAAEAGSLLSLMQLAQLPTALLIP 264 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHH------HHHHHHHc-----------------CCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34566666555555544444444 36777776 99999999999999999999999999
Q ss_pred HHhhhh-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC-cchhHHHHHHHHH
Q 009833 103 YTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRI-RGGLNILFQLNVT 180 (524)
Q Consensus 103 ~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~ 180 (524)
.+++|. .+|+..+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+...+.+..+..+ -++..++.+....
T Consensus 265 ~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY 343 (395)
T COG2807 265 LLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY 343 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence 999964 4677788888888888888877765443333 499999999999999999998876543 4455566665555
Q ss_pred HHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhh
Q 009833 181 IGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSL 221 (524)
Q Consensus 181 lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 221 (524)
+=..+||.+.+++.+.. .+|+..........++..+.-+
T Consensus 344 llAa~GP~l~G~lhDa~--gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 344 LLAAFGPWLFGFLHDAT--GSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHhhhhhhHhHHHHhc--CChHHHHHHHHHHHHHHHHHHh
Confidence 55566777744443333 3699888887777776666533
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-07 Score=89.75 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=90.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhh
Q 009833 79 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA-----AQNLAMLIVGRILLGCGVGFANQ 153 (524)
Q Consensus 79 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 153 (524)
+....+++.+...++.+++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777899999999999999999999999888877766655432 34567777888899999999999
Q ss_pred hhhhhhhccCC-------CCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 154 AVPLFLSEIAP-------TRIRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 154 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
...++++|..+ .++.|..++......-+|..+++.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 2334558888888888888888777443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=89.84 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHH-hcC----CCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFK-TLG----FGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQM 359 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~ 359 (524)
++.+...-+.--.+++++-..+..|+. +.+ ++++++..+...+....-+..+++||++|| +|+|+.+..+.+++
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~ 102 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM 102 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 455555555555566666655555553 344 888888888888877777888999999999 59999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch--hhhhhhHHHHHHHHHHHH
Q 009833 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE--TRSAGQSVTVCVNLLFTF 437 (524)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~ 437 (524)
+++.++++... ........+.+.+.. .....+-|....+..|++|++ .|-.+.++..+..++|+.
T Consensus 103 ~iGh~~L~~~~------------~~~~~gl~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl 169 (498)
T COG3104 103 AIGHLVLAISS------------VSGPGGLYIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL 169 (498)
T ss_pred HHHHHHHhccc------------cccccHHHHHHHHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence 99998887641 011111222222222 223334456667778999864 466778888888899999
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhccc
Q 009833 438 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPE 475 (524)
Q Consensus 438 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (524)
++|.+.+++.+..+|...+..+++....+++.+...++
T Consensus 170 ~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999998888888888887777766553
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-08 Score=90.84 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=107.9
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHH
Q 009833 314 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMI 393 (524)
Q Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (524)
.+-+..+.|++++...+.+++.+++.|.+.||+|+|..++++...+..+.+++++.- .. +..++.=
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-------------sy-~~l~vAR 166 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-------------SY-PMLFVAR 166 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-------------hh-HHHHHHH
Confidence 445567899999999999999999999999999999999999999998888887642 11 1222222
Q ss_pred HHHHhhhccccccccceeecccCCchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 394 CTFISAFAWSWGPLGWLIPSETFPLET-RSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
.+-+.+.+ ........++++.+|.+. |++++|+...+..+|..++|++.|.+++..|+...+.+.++..+.-..+-++
T Consensus 167 ~LQgvgsA-~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 167 SLQGVGSA-FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHhhhhHH-HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 22222222 223344566789999875 6999999999999999999999999999999876666555555444444444
Q ss_pred c
Q 009833 473 L 473 (524)
Q Consensus 473 ~ 473 (524)
+
T Consensus 246 v 246 (464)
T KOG3764|consen 246 V 246 (464)
T ss_pred e
Confidence 3
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-07 Score=88.51 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=100.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009833 81 QGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFANQAVPLF 158 (524)
Q Consensus 81 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 158 (524)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhccCCC-------CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 159 LSEIAPT-------RIRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 159 i~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
++|..+. ++.|..++......-+|..+++.+...
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999873 335788888888888888888877443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=91.80 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=117.3
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHH
Q 009833 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA----------QNLAMLIVGRILLG 145 (524)
Q Consensus 76 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----------~~~~~l~~~r~l~G 145 (524)
+|.++.+.|++.+...++.+++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 39999999999999999999999999999999999999999999999888654311 34445666788999
Q ss_pred hhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC----CCcchHHHHH-hhHHHHHHHHHHh
Q 009833 146 CGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK----SQWGWRISLG-LAGIPAALLTVGS 220 (524)
Q Consensus 146 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~----~~~~wr~~f~-~~~~~~~~~~~~~ 220 (524)
++.+..+.....++.+..|+++++...++.+...++|..+++.++..+.... ++++.++... +..+..++.+...
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~ 442 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLL 442 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765543322 2233333333 3333444444445
Q ss_pred hcccC
Q 009833 221 LLVTD 225 (524)
Q Consensus 221 ~~~~e 225 (524)
+++|+
T Consensus 443 ~llP~ 447 (468)
T TIGR00788 443 HLLPR 447 (468)
T ss_pred HhCCC
Confidence 56785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=94.17 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=105.9
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHH
Q 009833 313 TLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIM 392 (524)
Q Consensus 313 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (524)
....+.....+..+++.++..+|.++.|.++||+|||+++..+.++..++.+..++. ..+..+.+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------------~~~~~~~~ 176 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------------PNYWMFLI 176 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------------CcHHHHHH
Confidence 345566677888899999999999999999999999999999999888888666653 12223333
Q ss_pred HHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 393 ICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
.=++.+.+..+...+...+..|.++++.|+.+..+ ......++.+++...+++.. +|........+..+..++.+++
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444444455677788899999999999999 88888888899999888887 4554444444444444344444
Q ss_pred cccCC
Q 009833 473 LPETK 477 (524)
Q Consensus 473 ~~~~~ 477 (524)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 44543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-06 Score=84.92 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 009833 82 GLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA--AQNLAMLIVGRILLGCGVGFANQAVPLFL 159 (524)
Q Consensus 82 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 159 (524)
..+.+.....++..++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888889999999999999999999888776654443332 35777788889999999999999999999
Q ss_pred hccCCC-------CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 160 SEIAPT-------RIRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 160 ~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
+|..+. ++.|...+.......+|..+|+.+++.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 223566788887888888888877543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=75.09 Aligned_cols=307 Identities=13% Similarity=0.116 Sum_probs=157.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+....++|.+.-..+-..++...+.|.++||-|||+..+.-++.+.++++ .-.+++|-.++++|.+.|++.+..+.+..
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 77888999888888888888889999999999999977766666655443 34678999999999999999999998887
Q ss_pred hh-hhccCCCCCcchhHHHHHH----HHHHHHHHHHHHHhhccc-CCCC--cchHHHHHhhHHHHHHHHHHhhcccCChH
Q 009833 157 LF-LSEIAPTRIRGGLNILFQL----NVTIGILFANLVNYGTSH-IKSQ--WGWRISLGLAGIPAALLTVGSLLVTDTPN 228 (524)
Q Consensus 157 ~~-i~~~~~~~~r~~~~~~~~~----~~~lG~~~~~~~~~~~~~-~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 228 (524)
++ +.|.-+ +|+.---+... +.-+|.-+-.+++++.+. +.+. .|--.+|-..+.+..+...+.+ . .
T Consensus 147 sWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil--~---~ 219 (454)
T KOG4332|consen 147 SWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL--S---S 219 (454)
T ss_pred HHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH--h---h
Confidence 75 566542 23322211111 111222222222222211 1111 2333444433322222211111 0 1
Q ss_pred HHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 009833 229 SLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAP 308 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (524)
|-..-++..+.+..++ +.+...+.+..+.+ +.++-.+........+..+..|.|
T Consensus 220 W~ENygdps~~kdllt-----------------------qf~gaa~aiaSD~k---i~LLG~iqsLFE~smytFVFLWTP 273 (454)
T KOG4332|consen 220 WSENYGDPSENKDLLT-----------------------QFKGAARAIASDEK---IALLGAIQSLFEGSMYTFVFLWTP 273 (454)
T ss_pred hhhccCChhhhHHHHH-----------------------HhhHhHHHHhcchH---HHHHHHHHHHHhhhhheeeeeecc
Confidence 1111122111111111 11112222332222 233333344444444444455666
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCch--hHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHH
Q 009833 309 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRR--MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 386 (524)
Q Consensus 309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (524)
.+-.+ -...--|.+++.+.++.++|+-+..++..|-..| ..+.+.+++....+.+..+... ... ....+
T Consensus 274 aLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP------~kes~ 344 (454)
T KOG4332|consen 274 ALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSP------SKESP 344 (454)
T ss_pred cCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCC------CcCCc
Confidence 55311 0112357788888888899888887776654333 3444444444443333322221 111 11222
Q ss_pred HHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH
Q 009833 387 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 427 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 427 (524)
...++..+.+-...+..+..+ .-+-.+..|.+.|++.+-+
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhh
Confidence 333555555555555554433 3444677788888775444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-06 Score=77.33 Aligned_cols=148 Identities=9% Similarity=-0.088 Sum_probs=106.8
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 368 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 368 (524)
....++.............|.+.+.++.+..+++++......+..+.++..+++.+|+|+|+-++.+..++++++.++.-
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333445556778888889999999999999999999999999999999999999999999999998887754
Q ss_pred HHhhhccCCCccchhhHHHHHHHHHHHHHhhhccc-cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 369 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWS-WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
.. .... + ...+..++..+.+.+ .......++..+.|++....-+.+.+.++.+|..++|.+.+.+.
T Consensus 98 Aa-----------~~~~-y-~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 98 AA-----------SSKS-Y-GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred hh-----------hhhh-H-HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 32 1111 1 122222222222222 22344556677778877778889999999999999999999888
Q ss_pred hh
Q 009833 448 CH 449 (524)
Q Consensus 448 ~~ 449 (524)
.+
T Consensus 165 ls 166 (422)
T COG0738 165 LS 166 (422)
T ss_pred Hh
Confidence 73
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=64.50 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=70.7
Q ss_pred hhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHH
Q 009833 40 GYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGI 119 (524)
Q Consensus 40 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~ 119 (524)
|.....++ +.+|.+++|. ++|.++.|++.+.+++||.+|++...++.++..+++.+..+++
T Consensus 5 GigRFayT--plLP~M~~~~-----------------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~ 65 (85)
T PF06779_consen 5 GIGRFAYT--PLLPLMQADG-----------------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLL 65 (85)
T ss_pred hhHHHHHH--hHhHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34444444 5679999998 9999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 009833 120 FFIAGVAFNVAAQNLAMLI 138 (524)
Q Consensus 120 l~~~~~~~~~~~~~~~~l~ 138 (524)
...+..+.+++.++.+.+.
T Consensus 66 ~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 66 LTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHHHHHHHHhchHHHh
Confidence 9999999999999887653
|
Note that many members are hypothetical proteins. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=85.62 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhc
Q 009833 322 LYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFA 401 (524)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (524)
+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.+... +.....+.=++.+.+.+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------------~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------------SWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHhccchh
Confidence 7899999999999999999999999999999999999998888887642 22233333333333332
Q ss_pred cccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHHHHHHHhcccCC
Q 009833 402 WSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--KFGIFLFFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 402 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (524)
.. ..+...+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+..+...+..++.||+.
T Consensus 158 ~~-~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 158 GA-SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hh-hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 22 23556778999999999999999998888666666 6666666543 677666665555555555566777653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-09 Score=103.46 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhh
Q 009833 321 SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAF 400 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
.+...+...++..+|.++.|+++||+|||+.+..+..+..++.++..... ....+..+...-++.+..
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP------------SYNNFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc------------cccccccccccccccccc
Confidence 46778888999999999999999999999999998888888877766541 001122222222222222
Q ss_pred ccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHhcccCC
Q 009833 401 AWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH---FKFGIFLFFSGWVLIMSCFVFFLLPETK 477 (524)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (524)
..+..+....++.|..|++.|+...++.+....+|..++..+.-..... ..|.....+..+..+...+...++||..
T Consensus 116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333456678889999999999998888888777766665554333222 2356566555555555555556777763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=80.50 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=76.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhh-HHHHHHHHHH
Q 009833 316 FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTG-FAVLVVIMIC 394 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 394 (524)
++....+.+.....++.++|++..|++.||+|||++.....+++.++.++.++.... ..+ .....+.+.=
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~---------~~~~~~m~~L~~~R 151 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT---------TSPLGVMMTLCFFR 151 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC---------CCCcchhhHHHHHH
Confidence 455667888888999999999999999999999999998888888887755543211 111 1222222222
Q ss_pred HHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHH
Q 009833 395 TFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLF 435 (524)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 435 (524)
.+.+....+-.|+..++++|....+.||+-.+.....+..|
T Consensus 152 ~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 152 FLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred HHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 23333333456888888999999999998766655554443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.5e-06 Score=78.83 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=94.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ--NLAMLIVGRILLGCGVGFANQA 154 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 154 (524)
|.++.+..+.......+.+++.+++.++++|+|+|+++.++.++..++.++..+.+ +.+.+++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 55666777788888888888899999999999999999999999999999988876 7889999999999999999999
Q ss_pred hhhhhhccCCC-------CCcchhHHHHHHHHHHHHHHHHHH
Q 009833 155 VPLFLSEIAPT-------RIRGGLNILFQLNVTIGILFANLV 189 (524)
Q Consensus 155 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~lG~~~~~~~ 189 (524)
..++++|..+- +.-|...+......=+|..++..+
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999887652 233666677666666676666644
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-07 Score=86.26 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=125.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+-.+...|.....-..|-++.-++.+++..|+|+-+++..++....+=.+..++.+|.|+.+-..+++|+..+..+.++.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 66777788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHHHHH-HHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhc
Q 009833 157 LFLSEIAPTRIRGGLNILFQLN-VTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 222 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~~~~-~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 222 (524)
+|++...||+.|..+-++.+.. .++|--+|.++ .+.+...++=|..|.+.++.+++.+++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI---GG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI---GGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh---hhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654 57788888888 555556688899999998888777666443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=81.91 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh--cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCc-hhHHHHHHHHH
Q 009833 283 PQLVIAVALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGR-RMLLLEAGIQM 359 (524)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-r~~~~~~~~~~ 359 (524)
++.++...+..+.....+..+..-.-.|+++ .+-+.+..|++.+...++..+++++.|+...|.++ |+.++.+.+++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 3335555555554444333222222234454 66677788999999999999999999999999885 77888888888
Q ss_pred HHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHH
Q 009833 360 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVI 439 (524)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~ 439 (524)
.++.++...+... ++... .+++++=+..+.+.+.....-.|+++..-.+.|.++.+.......++..+|
T Consensus 113 ~~g~llY~~l~~~---------~~~~~--y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 113 IIGNLLYLALAYV---------PNGVK--YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHhc---------ccchH--HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 8888887544321 12122 333333333334444445666777776666778888777777666666666
Q ss_pred HHHHHHHHh---h-h---------chh-hHHHHHHHHHHHHHHHHHhcccCCC
Q 009833 440 AQAFLSMLC---H-F---------KFG-IFLFFSGWVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 440 ~~~~~~~~~---~-~---------g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (524)
|.+...... . . -|. +.++.+.+.++..+++.++++|...
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 655433221 1 0 022 4455555556666666666666443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=65.36 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 009833 78 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 157 (524)
Q Consensus 78 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 157 (524)
+++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+++.-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344443445566677778888899999999999999999999988654443 5677889999999999999999999999
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 009833 158 FLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 192 (524)
Q Consensus 158 ~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~ 192 (524)
++.+..++++|++..+++-.....+.++|.++..+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888877443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=74.06 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=112.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhh----------------------
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQN---------------------- 133 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~---------------------- 133 (524)
|.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..++.++..++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 7777888888888888888999999999996 68889999999998888665544321
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhhhhhccCC---CCC---cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHH
Q 009833 134 ---LAMLIVGRILLGCGVGFANQAVPLFLSEIAP---TRI---RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRI 204 (524)
Q Consensus 134 ---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~ 204 (524)
...++.+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+ ..+..++.+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~---~vyiq~~~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV---LVYIQDNVGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH---HHhhhhccccee
Confidence 1366777888888999999999999999998 322 2367888889999999999888 666667789999
Q ss_pred HHHhhHHHHHHHHHHh
Q 009833 205 SLGLAGIPAALLTVGS 220 (524)
Q Consensus 205 ~f~~~~~~~~~~~~~~ 220 (524)
-|.+..+...+..+++
T Consensus 226 gf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIF 241 (571)
T ss_pred eccHHHHHHHHHHHHH
Confidence 9988887766655543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=70.56 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred HHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhh-----
Q 009833 32 AATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR----- 106 (524)
Q Consensus 32 ~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----- 106 (524)
+.+.+++.|...++.. -.+|.+.++. + -++|.+|.|.++-+.. -+ -.-++|.++.|
T Consensus 5 L~~LY~lQGiP~GL~~--gsiPflL~~~-~--------------~~~sy~q~~~fSla~~-Pf-SlKlLWaPiVDs~y~~ 65 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAF--GSIPFLLQSM-A--------------KKVSYSQQAIFSLASY-PF-SLKLLWAPIVDSVYSK 65 (544)
T ss_pred HHHHHHHcCccccccc--ccchhhhccc-c--------------CCCChhHheeeeeeec-hh-HHHHhhhhhhhhhccc
Confidence 3445677888888852 2347777762 0 0778888776532211 00 02355666665
Q ss_pred hhhhHHHHH------HHHHHHHHHHHH----------HHhh-------h--hHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 009833 107 RLGRRLTML------IAGIFFIAGVAF----------NVAA-------Q--NLAMLIVGRILLGCGVGFANQAVPLFLSE 161 (524)
Q Consensus 107 r~Grr~~l~------~~~~l~~~~~~~----------~~~~-------~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 161 (524)
|+||||.-+ .|..+..++.-. -... + +...+...-++.=+-++..-.+.-.+.-.
T Consensus 66 ~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT 145 (544)
T PF13000_consen 66 RIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALT 145 (544)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhh
Confidence 899998543 333333333322 0000 0 11123333434445556666677777777
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009833 162 IAPTRIRGGLNILFQLNVTIGILFANLV 189 (524)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~lG~~~~~~~ 189 (524)
..++++++.+......+.++|..++..+
T Consensus 146 ~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 146 MLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 7888999999999888888888888766
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=77.97 Aligned_cols=152 Identities=13% Similarity=-0.019 Sum_probs=101.4
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHH
Q 009833 312 KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVI 391 (524)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (524)
++.++...+.+...+.+.++.+++.+.++.+.||++-.+.+....++-.+..++-.. .++.+..++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--------------~~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--------------VHSFPGLIA 139 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHH
Confidence 345666778899999999999999999999999999555544333332222222211 112223333
Q ss_pred HHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh------hhchhhH-HHHHHHHHH
Q 009833 392 MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC------HFKFGIF-LFFSGWVLI 464 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~g~~~~-~~~~~~~~~ 464 (524)
.-++.+.+ ..+..|....++..-+.++.|+.-+|+.++...+|+++++.+...+.. ..||... ++-+++.++
T Consensus 140 lr~llGl~-es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLF-ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHH-hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 33334444 444446556677899999999999999999999999999999887643 2355544 444555566
Q ss_pred HHHHHHHhcccCCC
Q 009833 465 MSCFVFFLLPETKN 478 (524)
Q Consensus 465 ~~~~~~~~~~~~~~ 478 (524)
.++++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 66677777776443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7e-05 Score=74.57 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=89.8
Q ss_pred hhHHHHHHhHHHHH-HhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc----cCchhH-HHHHHHHHHHHHHHHHHHHh
Q 009833 298 TGINAIMFYAPVLF-KTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK----VGRRML-LLEAGIQMFLSQTVIAIILG 371 (524)
Q Consensus 298 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~r~~-~~~~~~~~~~~~~~~~~~~~ 371 (524)
.....+..|+.++. +..|+++..++.+..+.-+...+.-++.|.++|| +||||. +.++.+.++++..++...
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-- 100 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-- 100 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--
Confidence 33444555565555 5589999999999999999999999999999997 466554 445555555554333221
Q ss_pred hhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCC-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 372 IKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFP-LETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
+ +.+ ......+..+..+++..++.....|- .++.+|+.+ +++|++..+.....+.+|..+++.+...+....
T Consensus 101 -p--~~s---~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 101 -P--DLS---MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred -C--CCC---cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 000 11112223333333344444433332 344567665 578999999999999988888777765555443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0046 Score=61.08 Aligned_cols=117 Identities=17% Similarity=0.084 Sum_probs=79.0
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh--------------------------
Q 009833 79 DNQGLQLFTSSLYL-AGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAA-------------------------- 131 (524)
Q Consensus 79 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-------------------------- 131 (524)
.++.+..+=....+ +..+......+++++++|.+++-+.+..+.....+.++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666554444 455667889999999999998876666655555544442
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhh-hhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhccc
Q 009833 132 -----QNLAMLIVGRILLGCGVGFANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195 (524)
Q Consensus 132 -----~~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~ 195 (524)
-+.|...+.-++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+......
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123333333344443333333 457888999999999999999999999999999888555554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=71.70 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccccc
Q 009833 329 GAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 408 (524)
Q Consensus 329 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
++..++.+...|.++|++|||..+........+....+.+.. ++.++ .....+++ .......
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----------------~~~~~-~~~l~g~~-~~~~s~~ 133 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----------------YWFFL-LLGLSGGF-SAIFSVG 133 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----------------HHHhh-hcccccch-hhhhhhh
Confidence 677888899999999999999999887777666666555421 22222 22222222 2223455
Q ss_pred ceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-HHHHHHHhcccCCCCCh
Q 009833 409 WLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLI-MSCFVFFLLPETKNVPI 481 (524)
Q Consensus 409 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 481 (524)
.+++++....+.|....|+.+.....+..++|.+.+.+.+..+....+.++....+ ..+...+++||+...+.
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 67788999999999999999999999999999999999998887655555554444 44445566777655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.012 Score=56.69 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHH-HHHHHHHhh
Q 009833 23 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYL-AGLTATFFA 101 (524)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~ 101 (524)
+.-+...+-.++..++.++..+..- .+.+.+.-. ..+++.+.++-+...+ +..+..++.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR------~lKDslvv~--------------~~gae~I~FlK~~~vlP~avif~~iy 82 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLR------SLKDSLVVT--------------RQGAESISFLKTWGVLPSAVIFTIIY 82 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HhhhheEee--------------cCcchhhHHHHHHHhchHHHHHHHHH
Confidence 3334444444555555555665542 445554111 2346667788777777 778889999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhh---------------h-----------------hHHHHHHHHHHHHhhhh
Q 009833 102 SYTTRRLGRRLTMLIAGIFFIAGVAFNVAA---------------Q-----------------NLAMLIVGRILLGCGVG 149 (524)
Q Consensus 102 g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------------~-----------------~~~~l~~~r~l~G~~~g 149 (524)
+++.+++-|.+++-.-+..+....+++++. . +.|...+...+.-+-..
T Consensus 83 ~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgs 162 (509)
T COG3202 83 QKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGS 162 (509)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHH
Confidence 999999999999887777777766666653 1 11333333333333323
Q ss_pred hhhh-hhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhccc
Q 009833 150 FANQ-AVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH 195 (524)
Q Consensus 150 ~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~ 195 (524)
.... .-.....|.+..+|-.|..++++.+.+++..++..+......
T Consensus 163 lV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 163 LVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 445667889988999999999999999999999888544444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=66.74 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=47.9
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 310 LFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 310 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
+.+++|++..+.+.++....+...+...+.|.+.||+|||+..+...++..++++.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999988777776666653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00026 Score=66.47 Aligned_cols=148 Identities=12% Similarity=0.102 Sum_probs=121.3
Q ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhh-hhhhHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhh
Q 009833 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTR-RLGRRLTMLIAGIFFIAGVAFNVA---AQNLAMLIVGRILLGCGV 148 (524)
Q Consensus 73 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 148 (524)
.+.+|.+..|...+......|..++....|++.. |.++|+.-.+++.+..++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 3445999999999999999999999999998887 688888888888887777665443 467889999999999999
Q ss_pred hhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC-------CCcchHHHHHhhHHHHHHHHHHh
Q 009833 149 GFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-------SQWGWRISLGLAGIPAALLTVGS 220 (524)
Q Consensus 149 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-------~~~~wr~~f~~~~~~~~~~~~~~ 220 (524)
|.......+.+.+...+++.|..+|.+.+...++..++..++....++. ...+|-.+|.+.++..++.+.+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888888877766544421 23567788888887766665553
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0018 Score=63.36 Aligned_cols=91 Identities=9% Similarity=0.062 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC---cchH--HHHH
Q 009833 133 NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ---WGWR--ISLG 207 (524)
Q Consensus 133 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~---~~wr--~~f~ 207 (524)
.++..++.-++.|++.+.......++.+. +|++ .+..+..+.+++++++.++........+. ..++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 57777888889999999888888887774 5544 45555566666666655543322211111 1122 3344
Q ss_pred hhHHHHHHHHHHhhcccCChH
Q 009833 208 LAGIPAALLTVGSLLVTDTPN 228 (524)
Q Consensus 208 ~~~~~~~~~~~~~~~~~e~p~ 228 (524)
+..++.+++++....++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444555555555556676663
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.8e-05 Score=54.43 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHH
Q 009833 291 LQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGI 357 (524)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 357 (524)
..++..+.....+.-|.|.++++.|+++.+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 4445555666778888999999999999999999999999999999999999999999887765443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0025 Score=60.17 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCC--cchHHHHHhhH
Q 009833 133 NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQ--WGWRISLGLAG 210 (524)
Q Consensus 133 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~--~~wr~~f~~~~ 210 (524)
.|+..++.-.+.|++.|......+...++ +|++.-+. ..+|.++++++..++........+. -+=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqa----vm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQA----VMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHH----HHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 56777788889999999888887777776 45553332 2334444444444432222222211 12223455555
Q ss_pred HHHHHHHHHhhcccCChH
Q 009833 211 IPAALLTVGSLLVTDTPN 228 (524)
Q Consensus 211 ~~~~~~~~~~~~~~e~p~ 228 (524)
++.+++.++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 555555555556776663
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00023 Score=68.93 Aligned_cols=108 Identities=21% Similarity=0.396 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCC---CcchhHHHHHHHH
Q 009833 112 LTMLIAGIFFIAGVAFNVAAQ---------NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTR---IRGGLNILFQLNV 179 (524)
Q Consensus 112 ~~l~~~~~l~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 179 (524)
|+++++.+++.+|.++..++. +.+.++++-++.++|.|+.-|....+.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 578889999999998855442 2368899999999999999999999999999866 3667888899999
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhc
Q 009833 180 TIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 222 (524)
Q Consensus 180 ~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 222 (524)
++|..++..+ ...+.+++||.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~---~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTL---VPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHC---CCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhccc---chhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999988 666667889999999998877776665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.8e-05 Score=53.48 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=41.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHH
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFF 121 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~ 121 (524)
|++..|+|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999988777665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00087 Score=68.91 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=97.3
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHH
Q 009833 309 VLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV 387 (524)
Q Consensus 309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (524)
++.+.+|++...+..+...+....-+..+++|+++|+ +|+++.+.++.++..++..++.+...... .......
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~------~~~~~~~ 86 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS------GHPLHDL 86 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc------ccchHHH
Confidence 3345588888888888777777778888899999997 69999999888888887766654311000 0011111
Q ss_pred HHHHHHHHHHhhhccccccccceeecccCCch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-------chhhHHH
Q 009833 388 LVVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-------KFGIFLF 457 (524)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------g~~~~~~ 457 (524)
..++.+.+ +.+...+.-|.......|.++++ .+-....+.....++|+.+++.+.+++.+.. +|...+.
T Consensus 87 ~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 87 LDLLGLAL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 22222222 22223334455566667777653 3667788888889999999999999887543 3444444
Q ss_pred HHHHHHHHHHHH
Q 009833 458 FSGWVLIMSCFV 469 (524)
Q Consensus 458 ~~~~~~~~~~~~ 469 (524)
..+++.+++.+.
T Consensus 166 i~~i~m~ia~lv 177 (654)
T TIGR00926 166 VPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.2e-05 Score=80.75 Aligned_cols=161 Identities=12% Similarity=-0.066 Sum_probs=1.3
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 009833 287 IAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVI 366 (524)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 366 (524)
..+++..+.+......+...++.+-++++++..++|++.+.+-++.++..++..++.+|-.|-+.+-.+.++++++.+++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 33444445554444444455556666799999999999999999999999999999999888888889999988888877
Q ss_pred HHHHhhhccC-C---------------Cc----------------c--chh-hHHHHHHHHHHHHHhhhcccccccccee
Q 009833 367 AIILGIKVKD-H---------------SE----------------D--LHT-GFAVLVVIMICTFISAFAWSWGPLGWLI 411 (524)
Q Consensus 367 ~~~~~~~~~~-~---------------~~----------------~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
.+--...... . .+ . ... .....++++.-+..+..+....++..+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 6543221100 0 00 0 000 1122333333344444444556788899
Q ss_pred ecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 412 PSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 412 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
+-|..+++..+...|+......+|..+|-.+.+...
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999999888887776666655443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=67.34 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 009833 285 LVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 364 (524)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 364 (524)
.+.++.+..+.+......+...+..+-++++++..+.|++...+-++..+......+...|..|-+++-++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34445555555554443344444444456899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhcc-------------CC---------------------Cc---cchhhHHHHHHHHHHHHHhhhccccccc
Q 009833 365 VIAIILGIKVK-------------DH---------------------SE---DLHTGFAVLVVIMICTFISAFAWSWGPL 407 (524)
Q Consensus 365 ~~~~~~~~~~~-------------~~---------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (524)
+.++--..... .. +. ...+...++++++..++.+.......++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 87665211000 00 00 0111224555555555666666666778
Q ss_pred cceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------------------c-hhhHHHHHHHHHHHHHH
Q 009833 408 GWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF------------------K-FGIFLFFSGWVLIMSCF 468 (524)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------g-~~~~~~~~~~~~~~~~~ 468 (524)
...|+-|...++......|+...+..+|-++|-.+.+.....+ | |+.-+++++...+...+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8899989888888899999999888888877777666554321 1 33444555555555556
Q ss_pred HHHhcccCCCCCh
Q 009833 469 VFFLLPETKNVPI 481 (524)
Q Consensus 469 ~~~~~~~~~~~~~ 481 (524)
.++++|+..++..
T Consensus 338 p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 338 PLFFFPKELPKSQ 350 (735)
T ss_pred HHHhCcccCcccc
Confidence 6667776655543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0022 Score=56.36 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=38.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhcccCC--CCcchHHHHHhhHHHHHHHHHHhhcc
Q 009833 166 RIRGGLNILFQLNVTIGILFANLVNYGTSHIK--SQWGWRISLGLAGIPAALLTVGSLLV 223 (524)
Q Consensus 166 ~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~--~~~~wr~~f~~~~~~~~~~~~~~~~~ 223 (524)
|+|+....+...+.++|.++.-+.-....... ..-.|++++.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888889999887765522221111 12359999999888877766664443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0035 Score=59.52 Aligned_cols=127 Identities=19% Similarity=0.010 Sum_probs=81.8
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHH--HHHH
Q 009833 314 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAV--LVVI 391 (524)
Q Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 391 (524)
+| +...+-+...++.+..++..+.+-|+.||+|-|....++.....++..+=....... .++..+ +...
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~--------v~~~f~~~l~~~ 145 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF--------VPPLFRRPLTHT 145 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc--------ccccchhhhhHH
Confidence 56 666777888899999999999999999999999999988888887776644432100 011112 1112
Q ss_pred HHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009833 392 MICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF 450 (524)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 450 (524)
.-.+...... ....++.-+..--+|+++|+.+..+..+.+.+|..++..+-..+..+.
T Consensus 146 Gq~iaa~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 146 GQSIAAAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hHHHHHHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 1111111111 111122223334679999999999999998888888777766655443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0096 Score=58.53 Aligned_cols=129 Identities=6% Similarity=-0.025 Sum_probs=80.3
Q ss_pred cchhHHHHHHHHHHHHH-HhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc---------chhhH---
Q 009833 319 SASLYSTVITGAVNVLS-TLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED---------LHTGF--- 385 (524)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 385 (524)
+...++-+...+...+. .++.+++++|++|+++...........+++++..........+.+ .+.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45555555555555554 778899999999999988777766666666655533111100000 00000
Q ss_pred ----HHHHHHHHHHHHhhhcccccc-ccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009833 386 ----AVLVVIMICTFISAFAWSWGP-LGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSML 447 (524)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 447 (524)
..+...+..+..-.++....+ +.|.+++|.+..++..+-.++....+++|..+++.+...+.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222222222222233 66888899999999999999999999999999999888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.021 Score=57.45 Aligned_cols=138 Identities=13% Similarity=0.041 Sum_probs=78.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHH-HHHHHH-HHHHHH----HhhhhH-HHHHHHHHHHHhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLI-AGIFFI-AGVAFN----VAAQNL-AMLIVGRILLGCGVG 149 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~l~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~g 149 (524)
|.+..+.+.+.+++.+|.++|+.+++++.++.-|+...+- +..+.+ ++..+. ++...+ ..++..-++.|+..|
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988754333332111 111111 111111 111111 223444567788889
Q ss_pred hhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHH
Q 009833 150 FANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLT 217 (524)
Q Consensus 150 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 217 (524)
+..|....+..+... ++-++..|.......+|.++|.++..+. +.+..|-....++.+.+.++..
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v--Llp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL--LLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHHHH
Confidence 888888777765432 2235566777777777777777764332 2222443333334444444333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0077 Score=57.47 Aligned_cols=158 Identities=11% Similarity=0.021 Sum_probs=94.1
Q ss_pred HhHHHHHHh-cCCCCcchhHHHHHHH-HHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccch
Q 009833 305 FYAPVLFKT-LGFGGSASLYSTVITG-AVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 382 (524)
Q Consensus 305 ~~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (524)
+..|++.+. .|++.++..--..+.+ -..+...+....+.|.++.|++++...+...+...++.+.
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------- 91 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------- 91 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 344555554 7888776653333333 3445555667789999999999998877766665554432
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--chhhHHHHHH
Q 009833 383 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--KFGIFLFFSG 460 (524)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--g~~~~~~~~~ 460 (524)
.......+.-+.++...+.- ...+.++-...|+++--++.+.......+|.+++..+...+.... .+.....+..
T Consensus 92 -~sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl 168 (412)
T PF01770_consen 92 -TSVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISL 168 (412)
T ss_pred -CcHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 12222333333333333222 122344445567777778888888888888777777766655533 2445555555
Q ss_pred HHHHHHHHHHHhcccCCC
Q 009833 461 WVLIMSCFVFFLLPETKN 478 (524)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (524)
.....+.+..+++|..++
T Consensus 169 ~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 169 ASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHcCCCCc
Confidence 656666666677776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0047 Score=60.87 Aligned_cols=156 Identities=18% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccC-----chhHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 009833 307 APVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVG-----RRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 381 (524)
Q Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (524)
.+++.+++|+++.+...+..+..+...+ .++.|.++|-+. ||..+.++.++..++.+.++....
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---------- 81 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---------- 81 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc----------
Confidence 3445567999998887777766665555 677889999873 555566666555544444444321
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccccceeecccC---CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 009833 382 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF---PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 458 (524)
.........+++.+...+.... ..+.-.+..|.. |.+ +|...+.......+|+.++..+.|.+.+..++...+.+
T Consensus 82 ~~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 82 SESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred ccchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 0111111122222222222211 112333444554 434 77788888888999999999999999998876654444
Q ss_pred HHHH-HHHHHHHHHhccc
Q 009833 459 SGWV-LIMSCFVFFLLPE 475 (524)
Q Consensus 459 ~~~~-~~~~~~~~~~~~~ 475 (524)
.... .+..+...+..+|
T Consensus 160 ~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 4333 3333334444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0074 Score=43.22 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=60.7
Q ss_pred HHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHH
Q 009833 300 INAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII 369 (524)
Q Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 369 (524)
-+.++..+|...++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667899999999999999999999999999999999999998888888888888877777777654
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.1 Score=50.76 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhc-CCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTL-GFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQT 364 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~ 364 (524)
.+.+.+..+....+--...+-.+.++.+. .-+-.-.+.....-.+..++.....|.+.||..|.+....+.+..-++..
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 33445555555555566666777777664 22333344555556667777788888999999999887776665444433
Q ss_pred HHHHHHhhhccCCCccch-hhHHHHHHHHHHHHHhhhcccccccccee----ecccC--CchhhhhhhHHHHHHHHHHHH
Q 009833 365 VIAIILGIKVKDHSEDLH-TGFAVLVVIMICTFISAFAWSWGPLGWLI----PSETF--PLETRSAGQSVTVCVNLLFTF 437 (524)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--p~~~~~~~~~~~~~~~~~~~~ 437 (524)
+-................ .......+......+.............+ +..+. +++.....++...-+=.+...
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 322222111111110000 11111111111111111111111111111 11122 334445556666666677899
Q ss_pred HHHHHHHHHHhhhchhhHHHH
Q 009833 438 VIAQAFLSMLCHFKFGIFLFF 458 (524)
Q Consensus 438 i~~~~~~~~~~~~g~~~~~~~ 458 (524)
++|.+.|.+.+..+......+
T Consensus 164 laPl~vG~l~t~~s~~~~~~~ 184 (432)
T PF06963_consen 164 LAPLFVGLLMTFASPVIAAIF 184 (432)
T ss_pred HHHHHHHHHhhccCHHHHHHH
Confidence 999999999987775544433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.11 Score=42.75 Aligned_cols=109 Identities=11% Similarity=-0.022 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhh
Q 009833 321 SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAF 400 (524)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (524)
-..-..+......++.++.+.+.+++|.|+.++++.+...+-...... + ..+..+....+.+.+.
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------------~--~~~~l~~~s~l~G~~~ 103 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------------P--NSYTLYPASALLGFGA 103 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------------h--hHHHHHHHHHHHhhhh
Confidence 334455556667777888888999999999999887766644443321 1 2233334444444444
Q ss_pred ccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 401 AWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
+..+.+. ..++.+...++.+++..++.-.+...+.++|..+.-.
T Consensus 104 a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 104 ALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 3455677778888888888888777776666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=50.57 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhHHHhh---hhhhHHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHHh
Q 009833 88 SSLYLAGLTATFFASYTTR---RLGRRLTMLIAGIFFIAGVAFNVAA------------------QNLAMLIVGRILLGC 146 (524)
Q Consensus 88 s~~~l~~~i~~~~~g~l~d---r~Grr~~l~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G~ 146 (524)
-...+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 3344555556666666664 5889999999999988888776553 246788888999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009833 147 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLV 189 (524)
Q Consensus 147 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~ 189 (524)
+.+......+.++.+.. +++|..+.++.-.-..++..++...
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 5668888888887777777766554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.056 Score=51.73 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=83.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIF-----FIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l-----~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 151 (524)
.-..++..+....|.+|-.++.--...+ |+ |++.+.+.+- ..+.....-+.++.|..++.-+..|+..|..
T Consensus 277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~ 352 (402)
T PF02487_consen 277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS 352 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence 3346778888888888877775433221 33 3333322222 2222223335688999999999999999999
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGT 193 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~ 193 (524)
++-....+.|-.++++|..+++....+.++|.+++.+++...
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00089 Score=62.68 Aligned_cols=117 Identities=9% Similarity=-0.025 Sum_probs=2.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcc
Q 009833 323 YSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAW 402 (524)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
.....+.++..+|+.+.++..-+..+++.+.+..+.-.+..-++.+....+. ....+....+.++.++.+++++..- .
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~-~~~~~~~~~~d~~~~i~~~l~g~TN-G 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPR-PRYLPVLFNSDAWFIILMLLFGFTN-G 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcc-cccCCCcccchHHHHHHHHHHHHcc-c
Confidence 3566788999999998886422211333333322222222111111101000 0000001112233333333333222 2
Q ss_pred ccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009833 403 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQ 441 (524)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~ 441 (524)
-...+...+.++..+++.|..+..+....-.+|-.+|..
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp ---HHHH--------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233466677788888888877766666555555555444
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=47.93 Aligned_cols=135 Identities=16% Similarity=0.050 Sum_probs=80.1
Q ss_pred HHHHhHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 009833 302 AIMFYAPVLFKTLGFGG--SASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSE 379 (524)
Q Consensus 302 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (524)
......+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+.+..+.....++.+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 33445555556555544 367788888888888888999999999999977766655433332222221
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc-hhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 009833 380 DLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL-ETRSAGQSVTVC-VNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 449 (524)
.....+........ .+.......+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 90 --~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --PNVGLALLLILRLL-QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --ccchHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11011122222221 1222223345566777888887 567888887777 4666777777666655544
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.4 Score=40.66 Aligned_cols=99 Identities=22% Similarity=0.326 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCC--CC
Q 009833 90 LYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPT--RI 167 (524)
Q Consensus 90 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~ 167 (524)
..+..+.++++.+.+..++|-|.++.++...+...- ..-+-+.|..++-.-...|++.+..+..--+|+++.-.. +.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 345556666777799999999999999888776532 223447788999999999999999998887777765432 22
Q ss_pred c---------chh----HHHHHHHHHHHHHHHHHH
Q 009833 168 R---------GGL----NILFQLNVTIGILFANLV 189 (524)
Q Consensus 168 r---------~~~----~~~~~~~~~lG~~~~~~~ 189 (524)
| .+. ..+++....+|.+++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 233 444555555555555544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.3 Score=45.29 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=100.5
Q ss_pred HHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc-CchhHHHHHHHHHHHHHHHHHHHHhhhccC------
Q 009833 304 MFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMFLSQTVIAIILGIKVKD------ 376 (524)
Q Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 376 (524)
.+...++...++.+...+...............+.+++++|.+ ||-+.+.++.++..++..++......+...
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 4455555666777776677677777777778888999999974 888888888888888876666554433211
Q ss_pred ----CCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCc----hhhh--hhhHHHHHHHHHHHHHHHHHHHHH
Q 009833 377 ----HSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPL----ETRS--AGQSVTVCVNLLFTFVIAQAFLSM 446 (524)
Q Consensus 377 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~--~~~~~~~~~~~~~~~i~~~~~~~~ 446 (524)
..+..........+...+........+.-|....+-+|.++. +.+. .-........++|..+...+..+.
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 011112222223333333333334445556666777888872 2222 455666667778888888887777
Q ss_pred HhhhchhhHHHHHHHHHHHHHH
Q 009833 447 LCHFKFGIFLFFSGWVLIMSCF 468 (524)
Q Consensus 447 ~~~~g~~~~~~~~~~~~~~~~~ 468 (524)
.++.+|..-+.....+...+++
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred hhcccceeeccHHHHHHHHHHH
Confidence 7777766444444444433333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.019 Score=51.68 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccC
Q 009833 84 QLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIA 163 (524)
Q Consensus 84 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 163 (524)
|.+.-+-.+-..+..+......||+---.=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.....-..+-+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 333334445555666667777887543222445566777888889999999999999999999888766555444332 2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCCh
Q 009833 164 PTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTP 227 (524)
Q Consensus 164 ~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 227 (524)
+ ....+.+..+.+.++++|..--.++.... ...-|...++...+.++.....+++.++|
T Consensus 144 ~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 P----SIVIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred C----CceeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 2 22334444444445555544322222222 24567777776666666666655543333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.1 Score=42.94 Aligned_cols=60 Identities=8% Similarity=-0.151 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhccc
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV 346 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (524)
.+.+++.........+.+.+-.+++.+.+-.+.. +........+.+.+..++.-.+.-+.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444454555567777777777766433322 44444555555555555444444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.04 Score=52.70 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc----cCchhHHHHH-HH
Q 009833 283 PQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDK----VGRRMLLLEA-GI 357 (524)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~r~~~~~~-~~ 357 (524)
+.++....+....++. ...-..|.+.+++..|.+....+.+....-+.+++.+++.|..+|| +||||..+.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4444444555554444 4556677888888999998888888888888899999999999997 5777765544 44
Q ss_pred HHHHHHHHHHHHHhhh--ccCCCcc-chhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhh-hhHHHHHHHH
Q 009833 358 QMFLSQTVIAIILGIK--VKDHSED-LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSA-GQSVTVCVNL 433 (524)
Q Consensus 358 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~ 433 (524)
..+++..++.....+. ..++... .........++.+-+.-........|. -++..|+...+.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 4444444444432221 1111100 011111111222222222222333333 345567777766666 8888888888
Q ss_pred HHHHHHHHHHH
Q 009833 434 LFTFVIAQAFL 444 (524)
Q Consensus 434 ~~~~i~~~~~~ 444 (524)
+|+.++-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 87766554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.2 Score=45.11 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh-hhch-hhHHHHHHHHHHHH
Q 009833 421 RSAGQSVTVCVNLLFTFVIAQAFLSMLC-HFKF-GIFLFFSGWVLIMS 466 (524)
Q Consensus 421 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~ 466 (524)
-+...|-.+..+.+|+++|+.+.+.+.- ..|. ...+..+.+.++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3566777888888999999988887765 3453 33344444444443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.88 Score=45.31 Aligned_cols=131 Identities=14% Similarity=0.038 Sum_probs=76.9
Q ss_pred CCcchhHHHHHHHH-HHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccch----------hhH
Q 009833 317 GGSASLYSTVITGA-VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH----------TGF 385 (524)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 385 (524)
+++....+=....+ +.++...+..++++++++.++..+..........++++..+. ..+.-.+.. ...
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP-~~~~lhp~~~~~~~~~~~~~~~ 134 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYP-NRDILHPDAFADKLLAILPPGF 134 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh-chhhcCCCHHHHHhhhhccchH
Confidence 34444444333333 334456667899999999998887766666666666655421 111100000 000
Q ss_pred HH-------HHHHHHHHHHhhhccc-cccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009833 386 AV-------LVVIMICTFISAFAWS-WGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 448 (524)
Q Consensus 386 ~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 448 (524)
.+ +...+..+..-.++.. ..-+.|.+++|..+.++..+-+++....++++..+++.+.....+
T Consensus 135 ~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 135 KGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111111112211 122458888999999999999999999999999999988887777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.099 Score=48.56 Aligned_cols=124 Identities=12% Similarity=-0.063 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHH------hh------hhHHHHHHHHH----HHHhhhhhhh
Q 009833 89 SLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV------AA------QNLAMLIVGRI----LLGCGVGFAN 152 (524)
Q Consensus 89 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~------~~------~~~~~l~~~r~----l~G~~~g~~~ 152 (524)
.-.....+..++.|...|+..|+|++...+.+.-++.++++ +. .++..+..+-+ +..++.=...
T Consensus 71 vesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~ 150 (503)
T KOG2601|consen 71 VESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASL 150 (503)
T ss_pred HHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566777888999999999999887776544443333 22 23443333332 2333222222
Q ss_pred hhhhhhhhccC----CCCCcchhH---HHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHH
Q 009833 153 QAVPLFLSEIA----PTRIRGGLN---ILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAAL 215 (524)
Q Consensus 153 ~~~~~~i~~~~----~~~~r~~~~---~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 215 (524)
.-....-.||. ..+.+.... +.....-..-..++|.+ .+.+....+-|..-...++-+++
T Consensus 151 A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~---tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 151 AGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVI---TGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhh---hcccceeechhhhhhhhHHHHHH
Confidence 22222224443 233333333 44444455566777777 55555555566544444444444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.3 Score=42.00 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhhhhcccCchhHHHHH
Q 009833 327 ITGAVNVLSTLVSIYSVDKVGRRMLLLEA 355 (524)
Q Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~r~~~~~~ 355 (524)
...+..++..+....+..|+..|.-+..+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHH
Confidence 33444455555555566666653333333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.34 Score=46.88 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCch---hhhhhhH
Q 009833 350 MLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLE---TRSAGQS 426 (524)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~ 426 (524)
+.+..+.++..++.+++.+........ .........+.+.+ ......+.-|....+..|.++++ .|.....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~-----~~~~~~~~~~gL~l-ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP-----SGIQLGLFYIGLAL-IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-----------CHHHHHHHH-HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh-----hhHHHHHHHHHHHH-HHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 456667777777777755543221110 00111122222222 22223344456666677888765 4566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcc
Q 009833 427 VTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLP 474 (524)
Q Consensus 427 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (524)
......++|..++....+++.++.+|...+.++.++.+.+++.++..+
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999888888888777776655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.73 E-value=1 Score=44.06 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHh--cCCCCcchhHHH---HHHHHHHHHHHhhhhhhhcccCchhHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKT--LGFGGSASLYST---VITGAVNVLSTLVSIYSVDKVGRRMLLLEA 355 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~ 355 (524)
+.+.++.+.........-.|.++++ .+.+-.+.+... -++++=-+=+.++=...++|+||||..++-
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 4445555655544444567888877 566655544332 233333333444555677889999875543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.30 E-value=11 Score=37.18 Aligned_cols=133 Identities=9% Similarity=-0.094 Sum_probs=79.3
Q ss_pred CCcchhHHHHHHHH-HHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCcc----------chhh-
Q 009833 317 GGSASLYSTVITGA-VNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED----------LHTG- 384 (524)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~- 384 (524)
+++....+-...-+ ++++..++..++.+++.+.++...........++++++..+....-.+.+ .+..
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34455555555555 56677788889999999999888776666666666665543111100000 0100
Q ss_pred -------HHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009833 385 -------FAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCH 449 (524)
Q Consensus 385 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 449 (524)
..|...+.....-.-......-+.+..++|....++..+-+++.+...+++..+++.+..++..+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00111111111111111111224566778999999999999999999999999988888887764
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.66 E-value=4 Score=36.54 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhhH--HHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhh
Q 009833 82 GLQLFTSSLYLAGLTATFFASYTTRRLGRR--LTMLIAGIFFIAGVAFNVAAQ-------NLAMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 82 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~ 152 (524)
--|.+.+.++++.++|+-+..++..|-..| ..+.+...+.++...+..+.. +...-+++-++.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 358999999999999999998888775554 455665555555444433321 22233556667777889999
Q ss_pred hhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH
Q 009833 153 QAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG 219 (524)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 219 (524)
|....+=+++.|++.|...+.++..-.++=..++-.. ...-....+-|..|-++.+...+..+.
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLyn---lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN---LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee---cccccCccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999988765544433222111 111111245677888777766665444
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.00 E-value=7.4 Score=34.34 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 009833 328 TGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLS 362 (524)
Q Consensus 328 ~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 362 (524)
..++..++.+.+-.++.|+..|.+..++.+++.+.
T Consensus 249 H~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 249 HALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 34455555555557888999888877776655544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.24 E-value=15 Score=34.35 Aligned_cols=85 Identities=11% Similarity=0.015 Sum_probs=60.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHhh----hhHHHHHHHHHHHHhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIA-----GVAFNVAA----QNLAMLIVGRILLGCG 147 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~-----~~~~~~~~----~~~~~l~~~r~l~G~~ 147 (524)
|-+--|.+.+.+.|..+..+|+...-++.|.--.-+.+..-.++..+ ..+-..|+ ++-+.+.+.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 66778899999999999999999998888754433332222222111 11111233 4667888899999999
Q ss_pred hhhhhhhhhhhhhc
Q 009833 148 VGFANQAVPLFLSE 161 (524)
Q Consensus 148 ~g~~~~~~~~~i~~ 161 (524)
.|...|....++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999998876
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.57 E-value=5.6 Score=37.71 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhc-----ccCchhHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVD-----KVGRRMLLLE 354 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~r~~~~~ 354 (524)
+..+.+.+..+........ ..|.+++..|.|-+..+.....+.= .---++...+.| |+||||.-++
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 5556666677777655555 8899999877776655544332221 111334455556 9999876543
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.7 Score=38.38 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=80.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009833 80 NQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLF 158 (524)
Q Consensus 80 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 158 (524)
+.|.-|....|.+|..+..-.....--+ .---.++..-.+++.+...+..+.+++|..++.-+.-|+-.|..++-..--
T Consensus 287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred hhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 3457788888888765543222111111 001122333344455556667788999999999999999989898888888
Q ss_pred hhccCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 009833 159 LSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 191 (524)
Q Consensus 159 i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~ 191 (524)
+.+-.++++|-.+|+....+-++|..++..++.
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 888888999999999999999999999988843
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=83.84 E-value=4.7 Score=39.16 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=6.2
Q ss_pred HHHHhhhhhhhccc
Q 009833 333 VLSTLVSIYSVDKV 346 (524)
Q Consensus 333 ~~~~~~~g~l~d~~ 346 (524)
++.....|++..|.
T Consensus 9 i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 9 IFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444554443
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 524 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 6e-40 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 524 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 37/289 (12%), Positives = 80/289 (27%), Gaps = 90/289 (31%)
Query: 216 LTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAK----EVKH 271
L + + ++P +++E L+K+ +I+P + + S K ++
Sbjct: 187 LNLKN---CNSPETVLEM---------LQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 272 PFRNLLKRRNRPQ-LVI------AVALQIFQ-QCTGINAIMFYAPVLFKTLGFGGSASLY 323
R LLK + L++ A A F C K L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------------KIL--------- 269
Query: 324 STVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHT 383
+ T V L + + + + ++++ L + +D ++ T
Sbjct: 270 --LTTRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 384 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAF 443
+ +I I +W W + + +N+L + F
Sbjct: 325 TNP-RRLSIIAESIRDGLATWDN--WK------HVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 444 LSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMT-ERVWKQ 491
+F P + I + +W
Sbjct: 376 DR------LSVF------------------PP--SAHIPTILLSLIWFD 398
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.29 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.25 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.16 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=398.51 Aligned_cols=446 Identities=27% Similarity=0.459 Sum_probs=353.1
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
.+++.+.++++++++.+++|||.++++ ..+|.+.++|..+. +.+.+.+..+.|++.+++.+|..+|+++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~--~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVIS--GTVESLNTVFVAPQ---------NLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGG--GTHHHHHHHHTGGG---------CCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCC---------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888999999999999998 45688888873221 1112445677899999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNV------------------AAQNLAMLIVGRILLGCGVGFANQAVPLFLSEI 162 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 162 (524)
+|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 478999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhcccCC-----CCcchHHHHHhhHHHHHHHHHHhhcccCChHHHHhcCChh
Q 009833 163 APTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFE 237 (524)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 237 (524)
.|+++|++..++.+.+..+|.++++.++....... ...+||+.+.+..++.++..+..+++||||+|+..+++.+
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 99999999999999999999999998876554332 2457999999999999988888999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCC
Q 009833 238 EGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFG 317 (524)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 317 (524)
++++.+++...++..+++..+.++..+..++. ...... ...++..+......+.+..+...+..|.+.+.+..+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 99999888765543333332222222221111 111122 22334456666677777778888889999999888888
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHH
Q 009833 318 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFI 397 (524)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (524)
...........++..+++.++++++.||+|||+.+..+...+.++.+.+..... .....+..+...+++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY----------TQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh----------cccchHHHHHHHHHHH
Confidence 777777888888999999999999999999999999888888887776665432 1222333444555556
Q ss_pred hhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh------c-hhhHHHHHHHHHHHHHHHH
Q 009833 398 SAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF------K-FGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~~~~ 470 (524)
.++..+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66667777888889999999999999999999999999999998887765432 1 2356677777888888888
Q ss_pred HhcccCCCCChHHhHHHHHccc
Q 009833 471 FLLPETKNVPIEEMTERVWKQH 492 (524)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
+++||||++++||+ |+.++++
T Consensus 461 ~~~PETkg~tLeei-~~~f~~~ 481 (491)
T 4gc0_A 461 KFVPETKGKTLEEL-EALWEPE 481 (491)
T ss_dssp HHCCCCTTCCHHHH-GGGTC--
T ss_pred heecCCCCCCHHHH-HHHhCCC
Confidence 99999999999998 7666544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=317.40 Aligned_cols=400 Identities=15% Similarity=0.063 Sum_probs=288.1
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHh
Q 009833 21 ITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFF 100 (524)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 100 (524)
.+++++......+++.+..+++...++ ..+|.+.+ ++ .+..+.|++.+++.++..+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFA--LAMPYLVE-----------------QG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHH--HHHHHTTS-----------------ST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----------------Hh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777788888877765 33354433 34 67889999999999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHH
Q 009833 101 ASYTTRRLGRRLTMLIAGIFFIAGVAFNVA----AQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQ 176 (524)
Q Consensus 101 ~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 176 (524)
+|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcc-hHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchH
Q 009833 177 LNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEP 254 (524)
Q Consensus 177 ~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
.+.++|.++++.++..+ .+..+ ||+.|++.+++.++..++ .+++||+|+....+++.+. .+..+
T Consensus 162 ~~~~~g~~~g~~~~~~l---~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 227 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLG---MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYP 227 (451)
T ss_dssp HHHHHHHTSHHHHHHHH---HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC--
T ss_pred HHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccc
Confidence 99999999999995443 24467 999999999888776655 5668888753211111100 00000
Q ss_pred HHHHHHHHHHHhhhh-ccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHH
Q 009833 255 EFLELVEASRIAKEV-KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVN 332 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 332 (524)
+. . .++.+++... +...++.++++. ++...+..+........+..+.|.++++ +|++..+.+.......++.
T Consensus 228 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 228 DD-Y-NEKAEQELTAKQIFMQYVLPNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp -------------CCTHHHHHHTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred cc-c-hhhhhcccccccchHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 0 0000000000 001233444333 5556666666666677788899998877 8999999999999999999
Q ss_pred HHHHhhhhhhhccc--CchhHHHHHHHHHH-HHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccc
Q 009833 333 VLSTLVSIYSVDKV--GRRMLLLEAGIQMF-LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGW 409 (524)
Q Consensus 333 ~~~~~~~g~l~d~~--~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (524)
+++.++.+++.||+ +||+.+..+..+.. ++.+.+... .....+......++.+.+.. ...+...
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 368 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------------PAGNPTVDMICMIVIGFLIY-GPVMLIG 368 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHh-chHHHHH
Confidence 99999999999999 99988776655544 333222211 11122222222333332222 2234445
Q ss_pred eeecccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhc
Q 009833 410 LIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLL 473 (524)
Q Consensus 410 ~~~~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (524)
.+..|.+|++.|+++.|+.+....+ +..++|.+.+.+.+..++...+.+.+.+.+.+.+..++.
T Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 369 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999 999999999999999887766655555555444444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=304.63 Aligned_cols=375 Identities=11% Similarity=0.095 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHH
Q 009833 24 IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASY 103 (524)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 103 (524)
+.+....++++..+..+++....+ ..+|.+.+++ |++..+.|++.+.+.+++.++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLND--ILLPQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHS-----------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555566666777888877777 4568899998 999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHH
Q 009833 104 TTRRLGRRLTMLIAGIFFIAGVAFN---VAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180 (524)
Q Consensus 104 l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (524)
++||+|||++++++.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.+
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-cCCCC----------------------cchHHHHHhhHHHHHHHHHHhhc--ccCChHHHHhcCC
Q 009833 181 IGILFANLVNYGTS-HIKSQ----------------------WGWRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGR 235 (524)
Q Consensus 181 lG~~~~~~~~~~~~-~~~~~----------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~ 235 (524)
+|.+++++++.... ..... .+||+.|++.+++.++..++.++ .||+++. +++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~ 240 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS 240 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc
Confidence 99999999955443 22110 01999998887776666555333 4655421 000
Q ss_pred hhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHh-
Q 009833 236 FEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKT- 313 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 313 (524)
.+ ++++.+.+++++++++. ++...+..+...........+.|.+ +++
T Consensus 241 ~~---------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 241 DA---------------------------KQGSFSASLSRLARIRH----WRWAVLAQFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp CS---------------------------STTSHHHHHHHHTTCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc---------------------------cccchhhhHHHHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 00111234556666665 4444555555555566777888888 776
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHH
Q 009833 314 LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMI 393 (524)
Q Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (524)
+|++..+.+.......++.+++.++.+++.||++||+.+..+.++..++.+.+... .. . +. ....
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~-~~-~~~~ 354 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GG-H-VG-LIAL 354 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CH-H-HH-HHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CC-c-HH-HHHH
Confidence 59999999999999999999999999999999999999988877776665554432 11 1 11 2222
Q ss_pred HHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHH
Q 009833 394 CTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFV 469 (524)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 469 (524)
.+.+.+.+ ...|....+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..+ +...+.+.+++.+..++.
T Consensus 355 ~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 355 TLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 22233332 33456667767888877 888888876 677999999999999999988 776666555544444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=278.25 Aligned_cols=387 Identities=13% Similarity=0.066 Sum_probs=246.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++++.++++|+++|++.+...+..
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 129 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNV 129 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCC--cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc-cCChH----
Q 009833 156 PLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-TDTPN---- 228 (524)
Q Consensus 156 ~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~---- 228 (524)
.+++.|++|+++ |+.++++++.+.++|..++|.++.. +.+..|||+.|++.++..++..++.++. ++..+
T Consensus 130 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 130 STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA---AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999988 7778888999999999999999544 4445789999999887766655553322 22110
Q ss_pred HHHhcCChhHHHHHHHH----------------HhCCCCchHHHHHHHHH---------HHHhhhhccchhhhcccCchh
Q 009833 229 SLIERGRFEEGKAVLRK----------------IRGTDKIEPEFLELVEA---------SRIAKEVKHPFRNLLKRRNRP 283 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 283 (524)
....+.+.++.++..+. ..+..+.++........ ....++.+....+..+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 284 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVS-- 284 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTT--
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHH--
Confidence 00011122222222221 11111111111000000 0000000000001111111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHH-----HHHH
Q 009833 284 QLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL-----EAGI 357 (524)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~-----~~~~ 357 (524)
.+...+..+.....+.....+.|.+.++ .+.+....+.......++.+++.++.+++.||++||+... .+..
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 285 --YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp --HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 2222222233333334444556666655 6766677788888888999999999999999999886544 4444
Q ss_pred HHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHH
Q 009833 358 QMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 437 (524)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 437 (524)
+..++.+.+.......... .....+.......+.+.+.. ...+....++.|.+|++.|+++.|+.+....+|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTS-----GKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCC-----TTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-----CCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443321110000 01122222222333333322 33455667888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhcccC
Q 009833 438 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 476 (524)
Q Consensus 438 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (524)
+++.+.+.+.+......+..++++..+.+++.++..++.
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 437 LNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776544555555555555555555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=279.31 Aligned_cols=360 Identities=14% Similarity=0.122 Sum_probs=269.2
Q ss_pred HHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhh
Q 009833 31 MAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGR 110 (524)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 110 (524)
+.+++.+..+++..... ..+|.+.+++ |.+..+.+++.+.+.++..++++++|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYI--PAIADMARDL-----------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHTTS-----------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHh--hhhHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566677777766 4458888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009833 111 RLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVN 190 (524)
Q Consensus 111 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~ 190 (524)
|+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 143 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI- 143 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhh
Q 009833 191 YGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEV 269 (524)
Q Consensus 191 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (524)
.+.+.+..+||+.|++.+++.++..+. .+++||+++.. ++ +++.
T Consensus 144 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~ 188 (375)
T 2gfp_A 144 --GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------------RTRL 188 (375)
T ss_dssp --HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC------------------------------CCCT
T ss_pred --HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc------------------------------cccH
Confidence 444555679999999998888777664 56688876320 00 0112
Q ss_pred ccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCc
Q 009833 270 KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGR 348 (524)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 348 (524)
+.++++.++++. ++...+..+........+..+.|.++++ +|.++.+.+.......++.+++.++.+++.||.++
T Consensus 189 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 189 LTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp TTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555544 4444455555555566677777777765 78888889999999999999999999999999887
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH
Q 009833 349 RMLLLEAGIQ-MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV 427 (524)
Q Consensus 349 r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 427 (524)
+ ...+... ...+...+..... .....+.......+.+.+.+. ..+....+..|..| +.|+++.|+
T Consensus 265 ~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~ 330 (375)
T 2gfp_A 265 L--MWQSVICCLLAGLLMWIPDWF----------GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGAL 330 (375)
T ss_dssp H--HHHHHHHHHHTSSSSSHHHHH----------HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHhhh----------ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHH
Confidence 3 2222222 1111111111100 111222222333333333332 34555667789888 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 009833 428 TVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 463 (524)
Q Consensus 428 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (524)
.+....++..+++.+.+.+.+..++...+.+.++..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999999999999999999988777666665544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=249.26 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=128.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhhh
Q 009833 78 YDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQAV 155 (524)
Q Consensus 78 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 155 (524)
++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|+++|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhccCCCCCcchhHHH---HHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhc
Q 009833 156 PLFLSEIAPTRIRGGLNIL---FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 222 (524)
Q Consensus 156 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 222 (524)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+ .+.+.+..+||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~---~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS---MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT---STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 889999999999998 444445578999999988887766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=240.40 Aligned_cols=353 Identities=14% Similarity=0.062 Sum_probs=214.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHH---HHHhhhhH-HHHHHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVA---FNVAAQNL-AMLIVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~g~~~ 152 (524)
|++..+.|++.+.+.++..++++++|+++||+|||++++++..+++++.. ...+++.. ..++..+++.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887765322 12233222 124456777777666555
Q ss_pred hhhhhhhhccCCC--CCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcccCChHHH
Q 009833 153 QAVPLFLSEIAPT--RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTDTPNSL 230 (524)
Q Consensus 153 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 230 (524)
+.....+.++.++ ++|+...+....+..+|..++|.++..... .+||+.|++.++..++..+..++.+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~- 193 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS- 193 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc-
Confidence 5555555555443 346777788877788888999988554432 479999998887765555555554443310
Q ss_pred HhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 009833 231 IERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL 310 (524)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (524)
+.+.++. .+.++ ++....+++++++++. ++...+..+.....+..+..+.|.+
T Consensus 194 --~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 194 --SATVANA-------VGANH--------------SAFSLKLALELFRQPK----LWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp --SSCSSSS-------SSSCC--------------CCCCHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccc-------ccccc--------------ccccHHHHHHHhcCCc----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000 0000012234444443 2222222222222334444556766
Q ss_pred HHh-cC---CCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHH
Q 009833 311 FKT-LG---FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFA 386 (524)
Q Consensus 311 ~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (524)
+.+ ++ .+....+....+..++.+++.++.++++||++||+.+..+..+..+..+.+... . ..
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------~--~~ 312 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------T--SA 312 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------C--SH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------c--cH
Confidence 654 32 123344666777778888999999999999999998887766655544333211 1 11
Q ss_pred HHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Q 009833 387 VLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT-VCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIM 465 (524)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 465 (524)
+..+....+...... ...+..+.+.+|.+|++.|+++.++. +..+.+++.++|.+.|.+.+..++...+.+.+...+.
T Consensus 313 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 313 LEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122222111221111 11123356778999999999999984 7888899999999999999887766555554444444
Q ss_pred HHH-HHHhcccC
Q 009833 466 SCF-VFFLLPET 476 (524)
Q Consensus 466 ~~~-~~~~~~~~ 476 (524)
+.+ .++..+|+
T Consensus 392 ~~~~~~~~~~~~ 403 (417)
T 2cfq_A 392 FTLISVFTLSGP 403 (417)
T ss_dssp HHHHHTTSSCCS
T ss_pred HHHHHHhhhcCC
Confidence 433 33334443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=127.08 Aligned_cols=154 Identities=6% Similarity=-0.067 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 365 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 365 (524)
++.+.+.++.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44455555555555567777788888999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009833 366 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 445 (524)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 445 (524)
..... ..++.+..++..++.+.+.+ ...+....++.|.+|++.|+.+.++.+....+|..+++.+.+.
T Consensus 108 ~~~~~-----------~~~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 108 FWPAA-----------EIMNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHH-----------HTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHhcc-----------ccccHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63321 11122223333333333333 3334556777899999999999999999999999999999999
Q ss_pred HH-hhhc
Q 009833 446 ML-CHFK 451 (524)
Q Consensus 446 ~~-~~~g 451 (524)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=127.06 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=124.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhh--hhHHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRL--GRRLTMLIAGIFFI-AGVAFNVAA--QNLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~ 151 (524)
|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 89999999999999999999999999999999 99999888887776 666666665 37888888899999999999
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHH-HHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHhhcc
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 223 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 223 (524)
.+....++.|.+|+++|++++++.+....+ |..+++.+ .+.+.+..||+..|++.+++.++..++.+++
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI---VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999 4444555789999999888877776665443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-13 Score=128.43 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=122.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009833 79 DNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLF 158 (524)
Q Consensus 79 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 158 (524)
+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999999999999999999999999998888888777778888888888888998888777778899
Q ss_pred hhccCCCCCcchhHHH-HHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 159 LSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 159 i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
+.|.+|++.|+++.++ ++....+|..++|.+ .+.+.+..|++..|.+.+++.++..++ .++.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH---HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999999 444445568899999888887777666 44466654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=119.73 Aligned_cols=173 Identities=13% Similarity=0.010 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 368 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~ 368 (524)
+.+..+........+....|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++.+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 33444444455566666778888889999999999999999999999999999999999999999888888877776654
Q ss_pred HHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009833 369 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 448 (524)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 448 (524)
. + +.+..+....+.+.+. ....+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 85 ~------------~--~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 85 T------------S--SLTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp H------------H--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred h------------c--cHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3 1 2222222222222222 22345556777899999999999999999999999999999999988
Q ss_pred hhchhhHHHHHHHHHHHHHH-HHHhcccC
Q 009833 449 HFKFGIFLFFSGWVLIMSCF-VFFLLPET 476 (524)
Q Consensus 449 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 476 (524)
..++...+.+.+...+...+ ..+..||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 87877655554444433333 33444544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-12 Score=124.56 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHH-h-----cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcc-cCchhHHHHHHHH
Q 009833 286 VIAVALQIFQQCTGINAIMFYAPVLFK-T-----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQ 358 (524)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~ 358 (524)
++...+..+.....++....+.+.+++ . +|.+..+.+++.+...++..++.++.|+++|| +|||+.+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 444445555555555666666666664 4 89999999999999999999999999999999 8999999998888
Q ss_pred HHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchh--hhhhhHHHHHHHHHHH
Q 009833 359 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET--RSAGQSVTVCVNLLFT 436 (524)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~ 436 (524)
..++.++.... . +.+...+...+.+.+.+ ...+....++.|.+|++. |+.+.++.+....+|.
T Consensus 95 ~~~~~~~~~~~------------~--~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 95 IMLGHIVLALP------------F--GASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHSC------------C--STTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------h--hHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 77777665532 1 11122222222222222 233556677789999988 7778888889999999
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 009833 437 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVF 470 (524)
Q Consensus 437 ~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (524)
.++|.+.+.+.+..+|...+...++..+.+++..
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888766666555444444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-11 Score=117.88 Aligned_cols=170 Identities=11% Similarity=0.062 Sum_probs=119.4
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHH-HhcC------CCCcchhHHHHHHHHHHHHHHhhhhhhhccc-CchhHHHHHHHHHH
Q 009833 289 VALQIFQQCTGINAIMFYAPVLF-KTLG------FGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQMF 360 (524)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~ 360 (524)
..+..+.....++....+.+.++ +++| ++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444444445555666676665 4588 9999999999999999999999999999999 99999998888777
Q ss_pred HHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHH---HHHHHHHHHH
Q 009833 361 LSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV---TVCVNLLFTF 437 (524)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~ 437 (524)
++.++.... . .+.+..++...+.+.+.+ ...+....++.|.+|++.|+++.+. .+....+|..
T Consensus 97 ~~~~~~~~~------------~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 97 VGHAFLAIF------------E-HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHT------------S-SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------c-ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 776665542 1 012222222233333322 3345666777899999999876666 8888999999
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 009833 438 VIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 472 (524)
Q Consensus 438 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (524)
++|.+.+.+.+..++...+.+.++..+.+++..+.
T Consensus 163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888776666555554444444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-10 Score=112.03 Aligned_cols=151 Identities=18% Similarity=0.086 Sum_probs=107.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-----NLAMLIVGRILLGCGVGFA 151 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 151 (524)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...++..-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 66777777777888888999999999999999999999999888888776655431 1222222222222222334
Q ss_pred hhhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhhccc---CCCCcchHHHHHhhHHHHHHHHHH-hhcccCCh
Q 009833 152 NQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH---IKSQWGWRISLGLAGIPAALLTVG-SLLVTDTP 227 (524)
Q Consensus 152 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 227 (524)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.. .....++...|++.++++++..+. ++++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 56777899999999999999999999988888888766332211 111234556788888877777665 57799984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 524 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.004 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 70.1 bits (170), Expect = 2e-13
Identities = 56/402 (13%), Positives = 114/402 (28%), Gaps = 34/402 (8%)
Query: 83 LQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAF----NVAAQNLAMLI 138
L S + +A + F + R R+ + I A + F A ++A++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 139 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKS 198
V L G G + + RGG+ ++ +G L+ +
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 199 QWGWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLE 258
W + + L F + + E +
Sbjct: 181 DWHAALYMPAFCAILVALFA-----------------FAMMRDTPQSCGLPPIEEYKNDY 223
Query: 259 LVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFK-TLGFG 317
+ + A++ + ++ +L+ +A+ I+ ++P K F
Sbjct: 224 PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA 283
Query: 318 GSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDH 377
S ++ + + TL+ + DKV R M L +
Sbjct: 284 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW------- 336
Query: 378 SEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 437
++ V ++ I + L L E P + T L
Sbjct: 337 ---MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 393
Query: 438 VIAQAFLSMLCHF--KFGIFLFFSGWVLIMSCFVFFLLPETK 477
V A A + F G F+ G ++ + ++ K
Sbjct: 394 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.004
Identities = 44/405 (10%), Positives = 96/405 (23%), Gaps = 47/405 (11%)
Query: 85 LFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV----AAQNLAMLIVG 140
+ +++ L L + +LG R +L + A ++VG
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 141 RILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQW 200
I+ G +GF A + R + + + +A + +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-TIN 165
Query: 201 GWRISLGLAGIPAALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELV 260
+ +G L + TD P+S +
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------------- 210
Query: 261 EASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSA 320
L ++ L + V + F T G
Sbjct: 211 ----------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 321 SLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSED 380
Y T + +N + ++ + ++A + S
Sbjct: 261 FGYVTTMGELLNASIMFFAPLIIN------------RIGGKNALLLAGTIMSVRIIGSSF 308
Query: 381 LHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIA 440
+ V+++ + F F + + F + + V C +
Sbjct: 309 ATSALEVVILKTLHMFEVPFLL---VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365
Query: 441 QAFLSMLCHFK--FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEE 483
+ G +L L + F L + +
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 524 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-39 Score=315.63 Aligned_cols=405 Identities=15% Similarity=0.036 Sum_probs=279.6
Q ss_pred cccccccchHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccccCCCCCCcccCCcchhHHHHHHHHHHH
Q 009833 15 VEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG 94 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~ 94 (524)
.+.+++.++++|.+...+.++.+...++...++ ..+|.+ +|+ |+|.+|+|++.+++.+++
T Consensus 13 ~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~--~~~p~~-~~~-----------------g~s~~~~g~~~s~~~~~~ 72 (447)
T d1pw4a_ 13 AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFA--LAMPYL-VEQ-----------------GFSRGDLGFALSGISIAY 72 (447)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH--HHHHHT-TSS-----------------TTCSSCHHHHHHHHHHHH
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHh-----------------CcCHHHHHHHHHHHHHHH
Confidence 334445556678888888888888888877766 344554 456 999999999999999999
Q ss_pred HHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCcch
Q 009833 95 LTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ----NLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGG 170 (524)
Q Consensus 95 ~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 170 (524)
.++++++|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.|...+...+++.|++|+++|++
T Consensus 73 ~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~ 152 (447)
T d1pw4a_ 73 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG 152 (447)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999988764 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHHHHhcCChhHHHHHHHHHhCC
Q 009833 171 LNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNSLIERGRFEEGKAVLRKIRGT 249 (524)
Q Consensus 171 ~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 249 (524)
++++.+.+..+|.++++.++...... ..+||+.|++.+++.++..++ +++.+|+|+........+.
T Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 219 (447)
T d1pw4a_ 153 IVSVWNCAHNVGGGIPPLLFLLGMAW--FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------- 219 (447)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------
T ss_pred cccccccccchhhhhhhhhhhhHhhh--hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------
Confidence 99999999999999999875543322 237999999988888777666 4456666542211111100
Q ss_pred CCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHh-cCCCCcchhHHHHHH
Q 009833 250 DKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVIT 328 (524)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 328 (524)
+.+.+.+..++.+++...++...+..++++ .++......++..........+.|.++.+ .+++..+.+......
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 220 -KNDYPDDYNEKAEQELTAKQIFMQYVLPNK----LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp -CCC-------------CCTHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred -hhhcccchhhccccccchhhHHHHHHHcCc----hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 000000000001111111111223333333 35555555566666667777888887755 788999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhHHHHHHHHHHHHHhhhcccccccc
Q 009833 329 GAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLG 408 (524)
Q Consensus 329 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
.+..+++.++.|++.||++|++..........+........... .....+...+..+..+ .......+..
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g-~~~~~~~~~~ 364 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---------PAGNPTVDMICMIVIG-FLIYGPVMLI 364 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---------CTTCHHHHHHHHHHHH-HHHTHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999998765544444333333322222110 1112222222222222 2222333455
Q ss_pred ceeecccCCchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 009833 409 WLIPSETFPLETRSAGQSVTVCVNLLF-TFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSC 467 (524)
Q Consensus 409 ~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 467 (524)
..+..|.+|++.|+++.|+.+..++++ ..++|.+.|.+.+..|+...+.+.+.+.+.++
T Consensus 365 ~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 424 (447)
T d1pw4a_ 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424 (447)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 667789999999999999999988875 55678899999999987655544444433333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=4.8e-28 Score=234.38 Aligned_cols=359 Identities=14% Similarity=0.025 Sum_probs=224.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAML----IVGRILLGCGVGFAN 152 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l----~~~r~l~G~~~g~~~ 152 (524)
|+|.+++|++.+++.++..++++++|+++||+|||++++++..+..++.++..+..+.... ++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999888887665543 455666666655555
Q ss_pred hhhhhhhhccCCC--CCcchhHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHH-hhcccCChHH
Q 009833 153 QAVPLFLSEIAPT--RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTDTPNS 229 (524)
Q Consensus 153 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~ 229 (524)
........+..++ +++.+..+........|..+++.++..... .+|+..+........+..++ .+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHHHHHHHHHHhcccccc
Confidence 5555444444332 345566777788888888888888554443 45666666555555444444 5666766521
Q ss_pred HHhcCChhHHHHHHHHHhCCCCchHHHHHHHHHHHHhhhhccchhhhcccCchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 009833 230 LIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPV 309 (524)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
. .+.++ + +.+.++..+....+..+.+..+............. .......+.
T Consensus 195 ~---~~~~~----------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 245 (417)
T d1pv7a_ 195 A---TVANA----------------V------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DVFDQQFAN 245 (417)
T ss_dssp S---CSSHH----------------H------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred h---hhhhh----------------h------hhhcccccccccccccccccccchhhhhHHHHHHH----Hhhhccccc
Confidence 0 00000 0 00000000111122222333222222222222211 222222222
Q ss_pred HHHh----cCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccchhhH
Q 009833 310 LFKT----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGF 385 (524)
Q Consensus 310 ~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (524)
+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.+... . +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~--~ 311 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------T--S 311 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------------C--C
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------------c--c
Confidence 2222 22333455667777788889999999999999999999988887777766655432 1 2
Q ss_pred HHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhhchhhH-HHHHHHHH
Q 009833 386 AVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTV-CVNLLFTFVIAQAFLSMLCHFKFGIF-LFFSGWVL 463 (524)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~g~~~~-~~~~~~~~ 463 (524)
.+.......+.+.+.+.. .+....+..|.+|++.|+++.++.. ....++..++|.+.|.+.|..|+... ++.+++.+
T Consensus 312 ~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~ 390 (417)
T d1pv7a_ 312 ALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 222233333333333322 3455667789999999999999854 56678999999999999999987654 44455555
Q ss_pred HHHHHHHHhcccCCCCChHH
Q 009833 464 IMSCFVFFLLPETKNVPIEE 483 (524)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~ 483 (524)
+..++..+.++++++.+.++
T Consensus 391 ~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 391 GFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHhhcCCCccchhH
Confidence 55556666666666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.2e-13 Score=131.99 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=128.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 009833 77 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVP 156 (524)
Q Consensus 77 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 156 (524)
+.+....+...+...++..++..+.+++.||+|+|+++..+.++.+++.++..+.++.+.+++.-++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcchhHHHH-HHHHHHHHHHHHHHHhhcccCCCCcchHHHHHhhHHHHHHHHHHh-hcccC
Q 009833 157 LFLSEIAPTRIRGGLNILF-QLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTD 225 (524)
Q Consensus 157 ~~i~~~~~~~~r~~~~~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 225 (524)
+++.|.+|+++|+++.++. +....+|..++|.+ .+.+.+..||+..|++.+++.++..++. +.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~---~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 56678999999998 5555666899999999888887776664 33443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=9.2e-13 Score=127.37 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=113.0
Q ss_pred HHHhHHHHHHhcCCCCcchhHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCccch
Q 009833 303 IMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLH 382 (524)
Q Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (524)
+....|.+ ++.|++..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++.+.....
T Consensus 44 ~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 112 (447)
T d1pw4a_ 44 FALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 112 (447)
T ss_dssp HHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----------
T ss_pred HHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh----------
Confidence 44445544 5689999999999999999999999999999999999999999988888877766654211
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccceeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-chhh-HHHHHH
Q 009833 383 TGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF-KFGI-FLFFSG 460 (524)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~-~~~~~~ 460 (524)
....+..++...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+.+...+.. +|.. ++..+.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 11111222222222222222 23445566789999999999999999999999999999888777655 3443 344444
Q ss_pred HHHHHHHHHHHhcccC
Q 009833 461 WVLIMSCFVFFLLPET 476 (524)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (524)
+..+..++.+++.+++
T Consensus 192 ~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHhcccc
Confidence 4445555555555544
|