Citrus Sinensis ID: 009865

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
MASAVLANRGEGNWPMQTKGSGPKFMGKAPNPNPKKRNFHPEINNGCQIDDVSPAVTQSAASDDASSINRRPNNDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIRQLKNRIESPQFRSGSKKSSISGNKRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFHEVKEKEVVKQQPLPKPEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPVRVTPAVKPLKQPKPKAKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATDAKKAKKGEAGDEDVDIGDEIPMSSFPPVEIEKDNAHNNNAASSSSSSSSSSSSDSSSSSGTTLLTI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccc
cccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHcccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccEEEEEHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHcHHHHccHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccc
MASAVLAnrgegnwpmqtkgsgpkfmgkapnpnpkkrnfhpeinngcqiddvspavtqsaasddassinrrpnndhllvGNYVSFNVASYSKKELFELKNRLISELEQIRQLKNriespqfrsgskkssisgnkrpfvsnELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDiiknpmdlgtvksklsknlydspasfaaDVRLTFnnamtynpkdhevHIIAEQFLARFEELFRPINEKLMQEDVQervlddefpahswnfhevkekevvkqqplpkpepmqrvlatgsnhnpkpnpppaaaapqmpvrtpspvrvtpavkplkqpkpkakdpnkremSMEEKHKLgiglqslpqeKMEQVIHILKKrngnlrqdedeiELDIEALDTETLWELDRFVTNYKKMVSKIKRQALMGinnvssadanrevpmaeKIEVATDAKkakkgeagdedvdigdeipmssfppveiekdnahnnnaassssssssssssdsssssgttllti
MASAVlanrgegnwpmqtkgsgpkfMGKAPNPNPKKRNFHPEINNGCQIDDVSPAVTQSAASDDASSINRRPNNDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIRQLknriespqfrsgskkssisgnkrpfvsnelkklnqqdngkLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAhswnfhevkekevvkqqplpkpEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPVrvtpavkplkqpkpkakdpnkremSMEEKHKLgiglqslpqEKMEQVIHILKkrngnlrqdedEIELDiealdtetlwelDRFVTNYKKMVSKIKRQALMginnvssadanrevpmaEKIEvatdakkakkgeagdedvdigdeIPMSSFPPVEIEKDNAHNNNAAssssssssssssdsssssgttllti
MASAVLANRGEGNWPMQTKGSGPKFMGKAPNPNPKKRNFHPEINNGCQIDDVSPAVTQSAASDDASSINRRPNNDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIRQLKNRIESPQFRsgskkssisgNKRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFHEVKEKEVVKQQPLPKPEPMQRVLATGSNHnpkpnpppaaaapQMpvrtpspvrvtpavKPLKQPKPKAKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQdedeieldiealdTETLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATdakkakkgeagdedVDIGDEIPMSSFPPVEIEKDNAHNNNAAssssssssssssdsssssGTTLLTI
***************************************************************************HLLVGNYVSFNVASYSKKELFELKNRLISELE*********************************************LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFH**************************************************************************************************VIHILK***********EIELDIEALDTETLWELDRFVTNYKKMVSKIKRQALMGIN****************************************************************************************
************************************************************************************************************************************************************CGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLM*******************************************************************************************************************KMEQVIHIL***************LDIEALDTETLWELDRFVT********************************************************GDEIPMSSF************************************TLLTI
********RGEGNWPMQTKGSGPKFMGKAPNPNPKKRNFHPEINNGCQIDDVSP*************INRRPNNDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIRQLKNRIES**************NKRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFHEVKEKEVVKQQPLPKPEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPVRVTPAVKP*******************EKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVAT************EDVDIGDEIPMSSFPPVEIEKDNAH******************************
**********************************************************************************VSF*V*S*SKKELFELKNRLISELEQIRQLKNRI*******************************QDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINE**************************************************************************************************EMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRFVTNYKKMVS*********************************************DVDIGDEIPMSSFPPVEIEKDN********************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASAVLANRGEGNWPMQTKGSGPKFMGKAPNPNPKKRNFHPEINNGCQIDDVSPAVTQSAASDDASSINRRPNNDHLLVGNYVSFNVASYSxxxxxxxxxxxxxxxxxxxxxxxxIESPQFRSGSKKSSISGNKRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFHEVKEKEVVKQQPLPKPEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPVRVTPAVKPLKQPKPKAKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRxxxxxxxxxxxxxxxxxxxxxTLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATDAKKAKKGEAGDEDVDIGDEIPMSSFPPVEIEKDNAHNNNAASSSSSSSSSSSSDSSSSSGTTLLTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query523 2.2.26 [Sep-21-2011]
Q9LXA7581 Transcription factor GTE2 no no 0.741 0.667 0.410 1e-88
Q9S7T1461 Transcription factor GTE3 no no 0.621 0.704 0.411 5e-59
Q8H1D7487 Transcription factor GTE5 no no 0.625 0.671 0.408 4e-54
Q9LNC4766 Transcription factor GTE4 no no 0.493 0.336 0.414 8e-51
Q7Y214590 Transcription factor GTE7 no no 0.277 0.245 0.622 5e-46
Q93YS6 688 Transcription factor GTE9 no no 0.583 0.443 0.325 9e-37
Q9FGW9 1061 Transcription factor GTE1 no no 0.671 0.330 0.300 1e-32
Q9LK27 813 Transcription factor GTE8 no no 0.418 0.269 0.358 3e-32
Q93ZB7 620 Transcription factor GTE1 no no 0.539 0.454 0.323 3e-31
Q9LS28494 Transcription factor GTE1 no no 0.317 0.336 0.402 4e-24
>sp|Q9LXA7|GTE2_ARATH Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2 Back     alignment and function desciption
 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/495 (41%), Positives = 267/495 (53%), Gaps = 107/495 (21%)

Query: 74  NDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIRQLKNRIESPQFRSGSKKSSIS-- 131
           +D    G+YVSF++  Y+  +L ELK RL SELE++R L+ RIES  F SGS  ++ +  
Sbjct: 61  DDSSAYGDYVSFDLDGYTSNQLRELKKRLNSELEEVRFLRERIESGTFVSGSVYTTQARS 120

Query: 132 ----------------------GNKR--PFVSNE--------LKKLNQQDNGKLMKNCGQ 159
                                 G KR  PF ++E        L  ++++    +M  CGQ
Sbjct: 121 FAGETNDVGVKKTKTKKKKIGHGQKRSNPFATDEPSLKRHVALDLMSEKVLKSMMTTCGQ 180

Query: 160 ILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADV 219
           IL KLMKHK  ++F +PVDVVG+ LHDY+ I+  PMDLGTVK  L K LY SP  FA+DV
Sbjct: 181 ILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASDV 240

Query: 220 RLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNF 279
           RLTF NAM+YNPK  +V+++AE+ L++F+  F P  ++                      
Sbjct: 241 RLTFTNAMSYNPKGQDVYLMAEKLLSQFDVWFNPTLKRF--------------------- 279

Query: 280 HEVKEKEVVKQQPLPKPEPMQRVL-ATGSNHNPKPNPPPAAAAPQM-------------- 324
            E +E +V+     P PE  QRV        N +  P   + A ++              
Sbjct: 280 -EAQEVKVMGSSSRPGPEDNQRVWNQNNVAENARKGPEQISIAKKLDSVKPLLPTLPPPP 338

Query: 325 -----------------------------PVRTPSPVRVTPAVKPLKQPKPKAKDPNKRE 355
                                         V     VR T   +  K PKPKAKDPNKRE
Sbjct: 339 VIEITRDPSPPPSPVQPPPPPSPPPQPVNQVEASLEVRETNKGRKGKLPKPKAKDPNKRE 398

Query: 356 MSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIELDIEALDTETLWELDRF 415
           M+M+EK KLG+ LQ LP EK+ Q+I IL+KR  +L QD DEIELDIEALD ETLWELDRF
Sbjct: 399 MTMDEKGKLGVNLQELPPEKLGQLIQILRKRTRDLPQDGDEIELDIEALDNETLWELDRF 458

Query: 416 VTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATDAKKAKK-GEAGDEDVDIG 474
           VTNY+KM SKIKRQ    I NVS+   N    M    E+ +  K+ +K GEAG+EDVDIG
Sbjct: 459 VTNYRKMASKIKRQGF--IQNVSTPPRN----MPPVTEMGSAEKRGRKGGEAGEEDVDIG 512

Query: 475 DEIPMSSFPPVEIEK 489
           ++IP+  +P VEIE+
Sbjct: 513 EDIPVEDYPSVEIER 527

Arabidopsis thaliana (taxid: 3702)
>sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 Back     alignment and function description
>sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 Back     alignment and function description
>sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 Back     alignment and function description
>sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
449459556533 PREDICTED: transcription factor GTE7-lik 0.896 0.879 0.622 1e-158
255554567 634 bromodomain-containing protein, putative 0.917 0.757 0.563 1e-152
356554832529 PREDICTED: uncharacterized protein LOC10 0.883 0.873 0.583 1e-147
356554838536 PREDICTED: transcription factor GTE11-li 0.894 0.873 0.580 1e-147
357476127533 Bromodomain-containing protein [Medicago 0.875 0.859 0.574 1e-144
296088086564 unnamed protein product [Vitis vinifera] 0.869 0.806 0.584 1e-144
359475584561 PREDICTED: transcription factor GTE2-lik 0.898 0.837 0.560 1e-143
224056335474 global transcription factor group [Popul 0.816 0.900 0.611 1e-143
356549487531 PREDICTED: uncharacterized protein LOC10 0.889 0.875 0.575 1e-140
449438275539 PREDICTED: uncharacterized protein LOC10 0.891 0.864 0.547 1e-137
>gi|449459556|ref|XP_004147512.1| PREDICTED: transcription factor GTE7-like [Cucumis sativus] gi|449511376|ref|XP_004163939.1| PREDICTED: transcription factor GTE7-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 318/511 (62%), Positives = 375/511 (73%), Gaps = 42/511 (8%)

Query: 1   MASAVLANRGEGNWPMQTKGSG----PKFMGKAP--NPNPK--KRNFHPEINNGCQIDDV 52
           MASAVLANR E NWP Q +G+G      FMGK P  NPNPK  K+ FH E+N G Q+DD 
Sbjct: 1   MASAVLANRNEANWP-QPRGNGRGTEEGFMGKVPFSNPNPKFNKKQFHGEMN-GFQMDD- 57

Query: 53  SPAVTQSAASDDASSIN--RRPNNDHLLVGNYVSFNVASYSKKELFELKNRLISELEQIR 110
           SPAVTQSA SDDASSIN  RR +N  +    YVSFNV+S S+KEL ELK RLISELEQIR
Sbjct: 58  SPAVTQSA-SDDASSINHHRRLSNG-VDFSQYVSFNVSSCSRKELIELKTRLISELEQIR 115

Query: 111 QLKNRIESPQFRSGSKK----SSISGNKRPFVSN----ELKKLNQQDNGKLMKNCGQILT 162
           QLK+RI S +  S  K     S   G KRP  ++    ELK+ N  DNG L+K C QILT
Sbjct: 116 QLKSRINSGELHSRPKHQKKFSKTLGTKRPLPTSSNGMELKRSNS-DNGNLLKACSQILT 174

Query: 163 KLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLT 222
           KLMKHK G+IFN PVDVVGM LHDYYDI+K PMDLG+VK KL K+ Y+SP  FA+DVRLT
Sbjct: 175 KLMKHKHGWIFNKPVDVVGMGLHDYYDIVKRPMDLGSVKVKLGKDAYESPYDFASDVRLT 234

Query: 223 FNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDDEFPAHSWNFHEV 282
           F NAMTYNPK H+VH +AEQ L RFEELFRP+ E L +ED +     +E PA SWN  E 
Sbjct: 235 FKNAMTYNPKGHDVHAMAEQLLVRFEELFRPVAEALEEEDRRFCGYQEELPASSWNHSEA 294

Query: 283 K---EKEVVKQQPLPKPEPMQRVLATGSNHNPKPNPPPAAAAPQMPVRTPSPVRVTPAVK 339
           +   +K+ +++Q + K EPM+   A  S+ NP           Q PV+TPSP+R  P VK
Sbjct: 295 ERTVKKDNIQKQVVKKTEPMK---APSSSSNP--------PMMQSPVKTPSPLRA-PPVK 342

Query: 340 PLKQPKPKAKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQDEDEIEL 399
           PLKQPKP+AKDPNKREM++EEKHKLGIGLQSLP EKMEQV+ I+KKRNG+L+QD DEIEL
Sbjct: 343 PLKQPKPRAKDPNKREMTLEEKHKLGIGLQSLPPEKMEQVVQIIKKRNGHLKQDGDEIEL 402

Query: 400 DIEALDTETLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATDAK 459
           DIEA+DTETLWELDR VTN+KKM+SKIKRQAL+     +S   N  +P  EKIEV ++ K
Sbjct: 403 DIEAVDTETLWELDRLVTNWKKMMSKIKRQALI---TAASMKPNGVMPTPEKIEVGSETK 459

Query: 460 KAKKGEAGDEDVDIGDEIPMSSFPPVEIEKD 490
           K +KGEAG+EDVDIGDE+P S+FPPVEIEKD
Sbjct: 460 KQRKGEAGEEDVDIGDEMPASNFPPVEIEKD 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255554567|ref|XP_002518322.1| bromodomain-containing protein, putative [Ricinus communis] gi|223542542|gb|EEF44082.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356554832|ref|XP_003545746.1| PREDICTED: uncharacterized protein LOC100819363 [Glycine max] Back     alignment and taxonomy information
>gi|356554838|ref|XP_003545749.1| PREDICTED: transcription factor GTE11-like [Glycine max] Back     alignment and taxonomy information
>gi|357476127|ref|XP_003608349.1| Bromodomain-containing protein [Medicago truncatula] gi|355509404|gb|AES90546.1| Bromodomain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296088086|emb|CBI35445.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475584|ref|XP_003631709.1| PREDICTED: transcription factor GTE2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056335|ref|XP_002298808.1| global transcription factor group [Populus trichocarpa] gi|222846066|gb|EEE83613.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549487|ref|XP_003543125.1| PREDICTED: uncharacterized protein LOC100802622 [Glycine max] Back     alignment and taxonomy information
>gi|449438275|ref|XP_004136914.1| PREDICTED: uncharacterized protein LOC101209352 [Cucumis sativus] gi|449521741|ref|XP_004167888.1| PREDICTED: uncharacterized protein LOC101228592 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query523
TAIR|locus:2155715590 GTE7 "AT5G65630" [Arabidopsis 0.273 0.242 0.516 4.5e-75
TAIR|locus:2038565766 GTE4 "AT1G06230" [Arabidopsis 0.210 0.143 0.572 6.4e-54
TAIR|locus:2032692461 GTE3 "AT1G73150" [Arabidopsis 0.411 0.466 0.439 9.9e-54
TAIR|locus:2030958487 AT1G17790 "AT1G17790" [Arabido 0.636 0.683 0.363 7.9e-46
TAIR|locus:2086498 813 GTE8 "AT3G27260" [Arabidopsis 0.231 0.148 0.475 5.6e-26
TAIR|locus:2158564 1061 NPX1 "nuclear protein X1" [Ara 0.288 0.142 0.362 7.6e-26
TAIR|locus:2082289 620 BET10 "AT3G01770" [Arabidopsis 0.198 0.167 0.519 2.6e-23
TAIR|locus:2044722386 IMB1 "AT2G34900" [Arabidopsis 0.233 0.316 0.403 2.6e-23
RGD|1306678 952 Brdt "bromodomain, testis-spec 0.198 0.109 0.476 1.3e-22
MGI|MGI:1914632726 Brd3 "bromodomain containing 3 0.210 0.151 0.422 6.3e-22
TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 354 (129.7 bits), Expect = 4.5e-75, Sum P(3) = 4.5e-75
 Identities = 77/149 (51%), Positives = 92/149 (61%)

Query:   342 KQPKPKAKDPNKREMSMEEKHKLGIGLQSLPQEKMEQVIHILKKRNGNLRQXXXXXXXXX 401
             K PKPKAKDPNKR M+MEEK KLG+ LQ LP EK+ Q++ IL+KRNG+L Q         
Sbjct:   390 KLPKPKAKDPNKRLMTMEEKSKLGMNLQDLPPEKLGQLLQILRKRNGHLAQDGDEIELDI 449

Query:   402 XXXXTETLWELDRFVTNYKKMVSKIKRQALMGINNVSSADANREVPMAEKIEVATXXXXX 461
                  ETLWELDRFVTNYKKM SKIKRQ    I NVS+   N    MA   E+ +     
Sbjct:   450 EAVDNETLWELDRFVTNYKKMASKIKRQGF--IRNVSTPPRN----MASVAEMGSAEKRT 503

Query:   462 XXXXXXXXXVDIGDEIPMSSFPPVEIEKD 490
                      VDIG++IP+  +P VEIE+D
Sbjct:   504 RRGDAGEEDVDIGEDIPIEDYPSVEIERD 532
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0009294 "DNA mediated transformation" evidence=RCA;IMP
TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1306678 Brdt "bromodomain, testis-specific" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914632 Brd3 "bromodomain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GTE906
global transcription factor group (474 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 2e-50
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 2e-36
cd0436999 cd04369, Bromodomain, Bromodomain 3e-28
smart00297107 smart00297, BROMO, bromo domain 6e-27
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 1e-22
pfam0043984 pfam00439, Bromodomain, Bromodomain 3e-22
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 4e-19
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 3e-18
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 2e-17
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 6e-17
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 3e-16
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 3e-16
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 4e-15
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 1e-14
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 4e-14
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 2e-12
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 3e-12
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 4e-12
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 6e-12
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 4e-11
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 6e-11
COG5076371 COG5076, COG5076, Transcription factor involved in 2e-10
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 4e-10
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 2e-09
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 7e-09
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 1e-08
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 1e-08
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 1e-07
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 5e-07
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 6e-06
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 8e-06
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 1e-05
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 1e-05
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 2e-05
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 0.001
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.001
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
cd05494114 cd05494, Bromodomain_1, Bromodomain; uncharacteriz 0.004
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information 
 Score =  167 bits (426), Expect = 2e-50
 Identities = 61/97 (62%), Positives = 73/97 (75%)

Query: 153 LMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSP 212
           +MK CG +L KLMKHK G++FN+PVDVV + L DY+DIIK PMDLGTVK KL K  Y SP
Sbjct: 1   VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60

Query: 213 ASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEE 249
             FAADVRLTF NAM YNP  ++VH +A++ L  FE 
Sbjct: 61  EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFET 97

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 523
KOG1474640 consensus Transcription initiation factor TFIID, s 100.0
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.95
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.95
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.95
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.94
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.94
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.94
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.94
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.93
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.93
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.93
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.93
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.93
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.93
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.93
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.93
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.93
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.92
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.92
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.92
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.91
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.91
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.9
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.9
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.9
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.89
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.89
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.89
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.89
smart00297107 BROMO bromo domain. 99.89
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.88
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.86
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.86
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.86
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.85
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.83
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.74
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 99.7
COG5076371 Transcription factor involved in chromatin remodel 99.68
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 99.44
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.38
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 99.3
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 99.03
KOG00081563 consensus Transcription initiation factor TFIID, s 98.95
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.87
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 98.79
KOG1474 640 consensus Transcription initiation factor TFIID, s 98.69
KOG00081563 consensus Transcription initiation factor TFIID, s 98.68
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 98.61
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 98.25
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 98.01
COG5076371 Transcription factor involved in chromatin remodel 97.05
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 96.53
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 89.35
KOG06441113 consensus Uncharacterized conserved protein, conta 89.34
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-40  Score=368.83  Aligned_cols=346  Identities=35%  Similarity=0.465  Sum_probs=220.7

Q ss_pred             ceEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc-Cc----------c--ccCC-----------CCC---CCC----
Q 009865           82 YVSFNVASYSKKELFELKNRLISELEQIRQLKNRIE-SP----------Q--FRSG-----------SKK---SSI----  130 (523)
Q Consensus        82 ~~~~~~~~~s~~e~~~l~~RL~~eLeqvr~l~~~i~-~~----------~--~~~~-----------~k~---k~~----  130 (523)
                      .+.+.+..++..+++++..||..+|+++|.+.++++ ..          .  +.+.           .+.   +..    
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  187 (640)
T KOG1474|consen  108 ASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPS  187 (640)
T ss_pred             cccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcCCCC
Confidence            345788889999999999999999999999999996 11          1  0000           000   000    


Q ss_pred             CCCCCCCCch-------------hhhhhccCCcHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCH
Q 009865          131 SGNKRPFVSN-------------ELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDL  197 (523)
Q Consensus       131 ~~~kr~~~~~-------------~~~~~~r~~~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL  197 (523)
                      .+.++.....             ............++++|..||..||.|+++|+|+.|||++.||+||||+||++||||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDL  267 (640)
T KOG1474|consen  188 PGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDL  267 (640)
T ss_pred             ccccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccH
Confidence            0001100000             000111123378999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCC----CCC
Q 009865          198 GTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKLMQEDVQERVLDD----EFP  273 (523)
Q Consensus       198 ~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~i~~~~~~~~~~~~~~~~----e~~  273 (523)
                      +|||+||++|.|.++.+|++||||||.|||+||++|++||.||..|+++|+.+|..+...+............    +..
T Consensus       268 gTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (640)
T KOG1474|consen  268 GTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQI  347 (640)
T ss_pred             HHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999987665432220000000    000


Q ss_pred             cCc-c---CcchhhHHHhhhcCCCCCCCchh-hhhhcCC-CCCCCCCCC-------CCCCC--CCCCCCCCCCCCCCCC-
Q 009865          274 AHS-W---NFHEVKEKEVVKQQPLPKPEPMQ-RVLATGS-NHNPKPNPP-------PAAAA--PQMPVRTPSPVRVTPA-  337 (523)
Q Consensus       274 ~~s-~---~~~~~~er~~kk~~~~~~~~~q~-~~~~~~~-~s~~~~~p~-------~~~~~--~q~~~~t~s~~~~~~~-  337 (523)
                      ... .   .......+.. ...........+ +....+. ....+..++       ++...  .+.............. 
T Consensus       348 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  426 (640)
T KOG1474|consen  348 PSNSVEGPRSSSFESRES-ASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTG  426 (640)
T ss_pred             ccccccCcccccchhccc-ccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchh
Confidence            000 0   0000000000 000000000000 0000000 000000000       00000  0000000000000000 


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CChHhHHHHHHHH--HhhCCCCCCCCCeEEEeCCCCC--------
Q 009865          338 -VKPLKQPKPKAKDPNKREMSMEEKHKLGIGLQS-LPQEKMEQVIHIL--KKRNGNLRQDEDEIELDIEALD--------  405 (523)
Q Consensus       338 -~k~~k~~k~k~~~~~~r~MT~eEK~~Ls~~I~~-Lp~e~l~~Vi~II--k~~~p~~~~~~dEIELDId~L~--------  405 (523)
                       ....+.....+...+++.||..|+..|...++. +++..+..+++|+  ..+.+.+.+++++|++|++.++        
T Consensus       427 ~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~  506 (640)
T KOG1474|consen  427 KLIKEKNKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPS  506 (640)
T ss_pred             hhhhhhhccccccccccccccccccccchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCC
Confidence             000122223344567899999999999999999 5999999999999  5577888888999999999999        


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHH
Q 009865          406 -----TETLWELDRFVTNYKKMVSKIKR  428 (523)
Q Consensus       406 -----~~TL~eL~rfV~~~~k~~~k~kr  428 (523)
                           .+|+|++.+|+..|.....+...
T Consensus       507 ~~~~~~e~~~~~~~~~~~~~~~~s~~~~  534 (640)
T KOG1474|consen  507 SNPLEIETIRETLKLSTERELELSKASS  534 (640)
T ss_pred             cccchhhhhhccccchhhHHHHHHHHhh
Confidence                 99999999999999987776665

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 4e-19
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 2e-18
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 2e-18
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 3e-18
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 7e-18
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 1e-17
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 1e-17
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 1e-17
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 3e-17
2e7n_A117 Solution Structure Of The Second Bromodomain From H 1e-16
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 3e-15
3dwy_A119 Crystal Structure Of The Bromodomain Of Human Crebb 3e-13
1jsp_B121 Nmr Structure Of Cbp Bromodomain In Complex With P5 4e-13
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 7e-13
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 7e-13
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 8e-13
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 1e-12
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 1e-12
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 2e-12
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 2e-12
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 2e-12
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 3e-12
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 3e-12
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 8e-12
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 2e-11
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 2e-11
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 2e-11
3fkm_X166 Plasmodium Falciparum Bromodomain-Containing Protei 2e-11
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 4e-11
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 4e-10
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 1e-09
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 1e-09
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 2e-09
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 4e-09
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 5e-09
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 6e-09
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 7e-09
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 7e-09
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 1e-08
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 2e-08
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 2e-08
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 6e-08
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 3e-07
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 5e-07
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 6e-07
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 6e-07
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 9e-07
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 1e-06
3lxj_A136 Crystal Structure Of The Bromodomain Of Human Aaa D 1e-06
2dkw_A131 Solution Structure Of The Bromodomain Of Human Prot 9e-06
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 9e-06
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 5e-05
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 6e-05
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 9e-05
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 1e-04
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 1e-04
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 1e-04
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 3e-04
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 3e-04
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 4e-04
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 4e-04
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 4e-04
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 5e-04
3iu5_A116 Crystal Structure Of The First Bromodomain Of Human 8e-04
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure 
Iteration: 1

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 154 MKNCGQILTKLMKHK---LGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYD 210
           +K+C +IL +++  K     + F +PVD   + LH+YYD++KNPMDLGT+K K+    Y 
Sbjct: 16  LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 211 SPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPI 254
               FAADVRL F N   YNP DHEV  +A      FE  F  I
Sbjct: 76  DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKI 119
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 Back     alignment and structure
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 Back     alignment and structure
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query523
3p1f_A119 CREB-binding protein; structural genomics consorti 1e-43
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 2e-43
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 3e-42
3fkm_X166 Signaling protein; bromodomain, malaria, structura 1e-40
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 1e-40
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 2e-40
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 3e-40
4alg_A154 Bromodomain-containing protein 2; signaling protei 3e-40
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 5e-37
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 7e-37
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 2e-36
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 4e-36
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 5e-36
3dai_A130 ATPase family AAA domain-containing protein 2; anc 1e-35
3d7c_A112 General control of amino acid synthesis protein 5; 1e-34
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 2e-34
2d9e_A121 Peregrin; four-helix bundle, transcription activat 3e-34
3nxb_A116 CAT eye syndrome critical region protein 2; struct 2e-33
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 3e-32
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 1e-31
3rcw_A135 Bromodomain-containing protein 1; transcription, s 3e-31
3uv4_A158 Second bromodomain of human transcription initiat 2e-30
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 4e-30
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 7e-26
3aad_A292 Transcription initiation factor TFIID subunit 1; p 9e-29
3aad_A292 Transcription initiation factor TFIID subunit 1; p 4e-27
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-26
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 4e-26
2grc_A129 Probable global transcription activator SNF2L4; br 1e-25
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 7e-25
2r0y_A311 Chromatin structure-remodeling complex protein RSC 2e-24
2r0y_A311 Chromatin structure-remodeling complex protein RSC 9e-18
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 3e-24
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 7e-24
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 3e-23
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-23
2r10_A361 Chromatin structure-remodeling complex protein RSC 3e-23
2r10_A361 Chromatin structure-remodeling complex protein RSC 4e-16
2dat_A123 Possible global transcription activator SNF2L2; br 4e-23
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 2e-22
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 8e-17
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 4e-15
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
 Score =  149 bits (378), Expect = 1e-43
 Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 143 KKLNQQDNGKLMKNCGQILTKLMK-HKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVK 201
           KK+ + +  +L +     L  L +       F  PVD   + + DY+DI+KNPMDL T+K
Sbjct: 4   KKIFKPE--ELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIK 61

Query: 202 SKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRPINEKL 258
            KL    Y  P  +  DV L FNNA  YN K   V+    +    FE+   P+ + L
Sbjct: 62  RKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.95
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3p1f_A119 CREB-binding protein; structural genomics consorti 99.95
3d7c_A112 General control of amino acid synthesis protein 5; 99.95
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.95
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.95
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.95
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.95
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.94
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.94
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.94
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.94
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.94
2dat_A123 Possible global transcription activator SNF2L2; br 99.94
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.94
2grc_A129 Probable global transcription activator SNF2L4; br 99.94
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.94
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.94
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.94
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.94
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.94
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.94
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3uv4_A158 Second bromodomain of human transcription initiat 99.92
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.92
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.91
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.91
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.91
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.9
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.9
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.89
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.89
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.89
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.88
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.87
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.87
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.86
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.79
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.78
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 99.75
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.73
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.54
2lm0_A125 AF4/FMR2 family member 1/protein AF-9 chimera; int 96.08
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
Probab=99.95  E-value=2e-28  Score=219.93  Aligned_cols=105  Identities=32%  Similarity=0.564  Sum_probs=100.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 009865          150 NGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTY  229 (523)
Q Consensus       150 ~~~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~Y  229 (523)
                      ..++...|..||..|++|+.+|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus        19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y   98 (127)
T 2oss_A           19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY   98 (127)
T ss_dssp             CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999987779999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH
Q 009865          230 NPKDHEVHIIAEQFLARFEELFRPI  254 (523)
Q Consensus       230 N~~~s~v~~~A~~L~~~Fe~~~~~i  254 (523)
                      |+++|.||.+|..|++.|++.|+.+
T Consensus        99 N~~~s~i~~~A~~L~~~f~~~~~~l  123 (127)
T 2oss_A           99 NKPGDDIVLMAEALEKLFLQKINEL  123 (127)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999998754
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 523
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 1e-26
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 2e-26
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 3e-24
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 1e-23
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 4e-23
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 1e-22
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-26
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 134 KRPFVSNELKKLNQQDNGKLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKN 193
            RP  S   ++ +      L      I+  +      Y F++PV+     + DYY II  
Sbjct: 10  NRPHKSIHRRRTDPMV--TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITR 65

Query: 194 PMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNPKDHEVHIIAEQFLARFEELFRP 253
           PMDL T++  + K LY S   F   + L   N+ TYN   H +  I++  L   +E  + 
Sbjct: 66  PMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 125

Query: 254 INEKLMQ 260
             +KL +
Sbjct: 126 KEDKLAR 132
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query523
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.94
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.94
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.94
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.93
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.92
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=204.50  Aligned_cols=100  Identities=27%  Similarity=0.441  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCccccCCCcccccCCCchhhhcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 009865          152 KLMKNCGQILTKLMKHKLGYIFNSPVDVVGMALHDYYDIIKNPMDLGTVKSKLSKNLYDSPASFAADVRLTFNNAMTYNP  231 (523)
Q Consensus       152 ~~~k~c~~iL~~L~~~~~s~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLif~Na~~YN~  231 (523)
                      ++...|..||..|++|+.+++|..||++..  +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus         2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCccCCCCChhh--CcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence            688999999999999999999999999876  999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q 009865          232 KDHEVHIIAEQFLARFEELFRP  253 (523)
Q Consensus       232 ~~s~v~~~A~~L~~~Fe~~~~~  253 (523)
                      ++|.+|.+|..|+++|++.+++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988764
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure