Citrus Sinensis ID: 009869

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

cccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccccccccEEEEEEccccccccEEEEccccccccHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccEEEccccccEEEEEccccccccEEEEEEccccccccccccccccHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEEcccccccHHcHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccEEEcccccccccccccccccccccccccHHHcccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccEEEEEccHcEEcHHHHcccccHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHccHHcccccccccccEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccHHcccccccEEEEEcccccEEEEEEEcccccccEEEEEEcccccccccccccccHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

meascslrsskfisppirpphhplsiastisisvirdpnfgsslrlVRRKNRFSirvsssdtlvaGSREVVSKKEEDLGDLkswmhknglppckvilkekpshnekhrpihyvaasedlqagdaafsvpNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHLQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVvdrpykagESIVVWYNIsftghdfkcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

meascslrsskfisppirpphhPLSIASTISISVIRDPNFGSSLRLVRRKNrfsirvsssdtlvagsrevvskkeedlgdlkswmhknglpPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAEllttnklsELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

*************************IASTISISVIRDPNFGSSLRLVRRKNRFSI****************************WMHKNGLPPCKVIL************IHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

*****S*RSSKFISPPI***************************************************************LKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATL**************KKRVATQLVRMEKKMLNACLQVTA******************A*L**

*********SKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

***SCSLRSSKFISPPIRPPHHPLSIASTISISVIRD*N*********RKNRFS***S*S*************KEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPY*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		523	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.780	0.701	0.227	2e-17
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.755	0.664	0.229	7e-17
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.755	0.663	0.229	2e-16
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.755	0.663	0.233	2e-16
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.755	0.663	0.233	3e-16
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.755	0.670	0.233	3e-16
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.755	0.664	0.233	5e-16
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.755	0.663	0.233	7e-16
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.755	0.671	0.233	1e-15
Q91WC0		594	Histone-lysine N-methyltr	yes	no	0.755	0.664	0.226	9e-15

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 203/466 (43%), Gaps = 58/466 (12%)

Query: 72  SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
            K+E+   +L  W  +NG       L E P           + A+ +++A +    VP  
Sbjct: 73  GKREDYFPELMEWCKENGASTDGFELVEFPEEG------FGLKATREIKAEELFLWVPRK 126

Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
           L++T+E   G+  +  L + +++ +      LA +L+ E+     SFWLPYI+ L  +  
Sbjct: 127 LLMTVESAKGS-VLGPLYSQDRILQAMGNITLAFHLLCERAD-PNSFWLPYIKTLPNE-- 182

Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
                 ++PL ++E E+ YL  +    ++  + +   R+Y      +F    + Q +P  
Sbjct: 183 -----YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQY-----AYFY--KVIQTHPNA 230

Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAMLAA 304
             +P  ++FTF+ ++ A  +V +    +     +R   AL+PL       +         
Sbjct: 231 NKLPLKDSFTFDDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNL 290

Query: 305 VDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVV 364
            DD  + V  + +K+GE I ++Y           G + N++ +I+ GF  E+N +DR+ +
Sbjct: 291 EDDRCECVALQDFKSGEQIYIFY-----------GTRSNAEFVIHNGFFFENNLHDRVKI 339

Query: 365 EAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GY 415
           +  ++  D  Y  K  V  R G  +  VF +H   E    + +L +LR+         G+
Sbjct: 340 KLGVSKSDRLYAMKAEVLARAGIPTSSVFALHV-TEPPISAQLLAFLRVFCMNEDELKGH 398

Query: 416 VSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKAR----LAGYPATLSEDEAMLTD 471
           +     +  + +      PVS   E  +  +L  + +AR    L  Y  T+ +D  +L  
Sbjct: 399 LIGDHAIDKIFTLGNSEFPVS--WENEI--KLWTFLEARASLLLKTYKTTVEDDNKVLEQ 454

Query: 472 YNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAP 517
            ++     +A +L R+EK++L   L+  +D   L    +    P P
Sbjct: 455 PDMTFHSAMAIKLRRVEKEILEKALKSASDNRKLYSKNSEEGTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q91WC0\|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		523
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.934	0.938	0.792	0.0
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.869	0.893	0.837	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.869	0.883	0.826	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.948	0.988	0.765	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.816	0.997	0.858	0.0
357497055		501	SET domain protein [Medicago truncatula]	0.906	0.946	0.770	0.0
22326803		514	Rubisco methyltransferase family protein	0.965	0.982	0.731	0.0
18377718		514	unknown protein [Arabidopsis thaliana]	0.965	0.982	0.729	0.0
297807453		516	SET domain-containing protein [Arabidops	0.969	0.982	0.723	0.0
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.826	0.860	0.814	0.0

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/510 (79%), Positives = 442/510 (86%), Gaps = 21/510 (4%)

Query: 21  HHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSR-------EVVSK 73
           H PL + S IS+S  R  +F +S   +RR N  S   SSS+TLVAGSR       E V+K
Sbjct: 24  HRPLLLLSKISVSAPRISHFSNSFSPIRRWNVCS--ASSSETLVAGSRKENGKTGEAVTK 81

Query: 74  KEED-LGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132
           KE+D  GDLK+WMH NGLPPCKVIL+EKPSH++ HRPIHYVAASEDL+ GD AFSVPNSL
Sbjct: 82  KEDDEFGDLKAWMHDNGLPPCKVILEEKPSHDKNHRPIHYVAASEDLEVGDVAFSVPNSL 141

Query: 133 VVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQL 192
           VVTLERVLGNET+AELLTTNKLSELACLALYLMYEKKQGKKSFW PYIRELDRQRGRGQL
Sbjct: 142 VVTLERVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQL 201

Query: 193 AVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTE 252
           AVESPLLWSE EL YL+GSPTK E+LERAEGIK+EYNELDTVWFMAGSLFQQYPYDIPTE
Sbjct: 202 AVESPLLWSEDELDYLSGSPTKKEVLERAEGIKKEYNELDTVWFMAGSLFQQYPYDIPTE 261

Query: 253 AFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLV 312
           AF+FEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAY S CKAML AVD AV+LV
Sbjct: 262 AFSFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYRSNCKAMLTAVDGAVELV 321

Query: 313 VDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTED 372
           VDRPYKAGESI VW           CGPQPNSKLL+NYGFVDEDN YDRLVVEAALNTED
Sbjct: 322 VDRPYKAGESIAVW-----------CGPQPNSKLLLNYGFVDEDNRYDRLVVEAALNTED 370

Query: 373 PQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPI 432
           PQYQDKRMVAQRNG+LS+Q F+V+AG+EKEA+ DMLPYLRLGYV+  SEMQSVISS GP+
Sbjct: 371 PQYQDKRMVAQRNGRLSIQAFYVYAGKEKEAVLDMLPYLRLGYVTHPSEMQSVISSQGPV 430

Query: 433 CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 492
           CPVSPCMERA+L+Q+ADYFK RLAGYP TLSEDE +L D NL+PKKRVATQLVR+EKK+L
Sbjct: 431 CPVSPCMERAMLEQVADYFKRRLAGYPTTLSEDEFLLADGNLNPKKRVATQLVRLEKKLL 490

Query: 493 NACLQVTADMIMLLPDVTVSPCPAPYAPLL 522
           ++CL+VT D I  LPD TVSPCPAPYAPLL
Sbjct: 491 HSCLEVTIDFINQLPDHTVSPCPAPYAPLL 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|18377718\|gb\|AAL67009.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		523
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.963	0.980	0.715	2.8e-192
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.586	0.609	0.267	6e-15
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.795	0.863	0.236	1.5e-12
TAIR\|locus:2097253		463	AT3G55080 "AT3G55080" [Arabido	0.263	0.298	0.285	1.4e-07
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.548	0.483	0.219	1.6e-07
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.548	0.483	0.216	1.6e-07
UNIPROTKB\|E2RBS6		588	SETD3 "Histone-lysine N-methyl	0.749	0.666	0.224	2.6e-07
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.546	0.480	0.223	2.6e-07
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.548	0.482	0.216	3.3e-07
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.548	0.482	0.216	3.3e-07

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1863 (660.9 bits), Expect = 2.8e-192, P = 2.8e-192
 Identities = 380/531 (71%), Positives = 423/531 (79%)

Query:     1 MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSS 60
             ME   +   +K +S PIR    PLS  S  S+   R+    SS R V  +   S+ VSSS
Sbjct:     1 MEGVITCFHTKCVSLPIRS--FPLSRVS--SLPRWRNNKLISSSRSVHLR---SLCVSSS 53

Query:    61 DTLVA-GS-RE------VVSKKE-EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIH 111
             DTLVA GS +E      V SKKE +D  DLK WM KNGLPPCKVILKE+P+H++KH+PIH
Sbjct:    54 DTLVASGSPKEDERQSKVSSKKEGDDSEDLKFWMDKNGLPPCKVILKERPAHDQKHKPIH 113

Query:   112 YVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 171
             YVAASEDLQ GD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG
Sbjct:   114 YVAASEDLQKGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 173

Query:   172 KKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 231
             KKS W PYIRELDRQRGRGQL  ESPLLWSE EL YLTGSPTKAE+LERAEGIKREYNEL
Sbjct:   174 KKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGIKREYNEL 233

Query:   232 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPL 291
             DTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA+QSCVVHLQ V LARRFALVPLGPPL
Sbjct:   234 DTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFALVPLGPPL 293

Query:   292 LAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYG 351
             LAY S CK               RPYKAG+ IVVW           CGPQPN+KLL+NYG
Sbjct:   294 LAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVW-----------CGPQPNAKLLLNYG 342

Query:   352 FVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYL 411
             FVDEDNPYDR++VEAALNTEDPQYQDKRMVAQRNGKLS QVF V  G+E+EA+ DMLPYL
Sbjct:   343 FVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRNGKLSQQVFQVRVGKEREAVQDMLPYL 402

Query:   412 RLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTD 471
             RLGY+SD SEMQSVISS GP+CP+SPCMERAVLDQLA+YF  RL+GYP T  ED+A+L D
Sbjct:   403 RLGYMSDPSEMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDALLAD 462

Query:   472 YNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLL 522
              +L P+KRVAT+LV++EKK+L ACL  T D++  LPD  +SPCPAPYAP L
Sbjct:   463 PSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSL 513

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2097253 AT3G55080 "AT3G55080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020556001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (509 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		523
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	8e-28

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  107 bits (269), Expect = 8e-28
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 368 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 427
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 428 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 482
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 483 QLVRMEKKML 492
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		523
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.98
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.76
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.46
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.24
KOG1085		392	consensus Predicted methyltransferase (contains a	89.61
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	82.26

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=2.7e-34  Score=310.45  Aligned_cols=393  Identities=33%  Similarity=0.412  Sum_probs=300.2

Q ss_pred             ccchhcHHHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCccCccCcccccCCchHHHhhcc
Q 009869           72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (523)
Q Consensus        72 ~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~l~~~l~~  151 (523)
                      ....+....+..|.+.+|....+..+ ....  ..+   +++.+..++..++.+..+|....++.......         
T Consensus        43 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  107 (472)
T KOG1337|consen   43 IASSENIKSLKFWLTGNGLSSSKSSL-PGND--IDE---WPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYN---------  107 (472)
T ss_pred             CCCccccccceeccccCCcchhhhcc-cccc--ccc---cchhhhhhhhhhhhhccCCchhhhccccccCc---------
Confidence            34557778888999999987654332 1111  112   35666777777777776666665555544321         


Q ss_pred             CCCChh-HHHHHHHHHHHhcCCCCCcHHHHHhcccccCCCccccCCccccCHhHHhhccCCchHHHHHHHHHHHHHHHHH
Q 009869          152 NKLSEL-ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE  230 (523)
Q Consensus       152 ~~~~~~-~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~  230 (523)
                         +.. ..++++|+.|...+..|.|++|+..||.       .+++|++|..+++..|++++....+..+...++..+.+
T Consensus       108 ---~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~  177 (472)
T KOG1337|consen  108 ---DLLPIALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAE  177 (472)
T ss_pred             ---cccHHHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHH
Confidence               111 6889999999998888999999999999       57999999999999999999999999999888887777


Q ss_pred             HHHHHHhhhhhhhcCCCCCCCCCcChhHHHHHHhhhhcceeeeccc------cccccccccccCCCccCCCCCCceeEee
Q 009869          231 LDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAA  304 (523)
Q Consensus       231 l~~~~~~~~~l~~~~~~~~~~~~~t~~~f~wA~~~V~SRa~~~~~~------~~~~~~~LVPl~Dmlnhh~~~~~a~~~~  304 (523)
                      +.+++......+....    .+.+++++|+||+++|.||+|+....      +-....+|+|++||+||....+.+.+..
T Consensus       178 ~~~~~~~~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~  253 (472)
T KOG1337|consen  178 LLEVLQSHPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQ  253 (472)
T ss_pred             HHHHHHhccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccC
Confidence            7765433322222222    23389999999999999999987432      2235679999999987644444677777


Q ss_pred             eCCeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHHhcCcccCCCCCCeEEEEEecCCCCcChHHHHHHHHH
Q 009869          305 VDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQR  384 (523)
Q Consensus       305 ~~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~  384 (523)
                      .++.+.+++.++|++||||||+           ||+++|++||++||||.++||+|.|.+.+.+...|+.+..|.+.+..
T Consensus       254 ~d~~~~l~~~~~v~~geevfi~-----------YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~  322 (472)
T KOG1337|consen  254 EDEAVELVAERDVSAGEEVFIN-----------YGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKK  322 (472)
T ss_pred             CCCcEEEEEeeeecCCCeEEEe-----------cCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhh
Confidence            7789999999999999999999           99999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEcCCccchHhhhhHHHHhhc---CCChHHHHHHHHh-------cCCCCCCChhhHHHHHHHHHHH-HHH
Q 009869          385 NGKLSVQVFHVHAGREKEAISDMLPYLRLGY---VSDTSEMQSVISS-------LGPICPVSPCMERAVLDQLADY-FKA  453 (523)
Q Consensus       385 ~g~~~~~~f~l~~~~~~~~~~~Ll~~LRl~~---~s~~~el~~~~~~-------~~~~~~~s~~nE~~vl~~L~~~-l~~  453 (523)
                      ++......|.+...+++.  .+++...++..   +..+.++......       ....++++..+|...+..+... +..
T Consensus       323 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  400 (472)
T KOG1337|consen  323 NGLPSSGEFSILLTGEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSL  400 (472)
T ss_pred             cCCCCCceEEEeecCCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccc
Confidence            998888888887766542  33333333222   2112122222211       1134677888999999988888 778


Q ss_pred             HHhcCCCChHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009869          454 RLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL  506 (523)
Q Consensus       454 ~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~eK~IL~~~l~~l~~~~~~l  506 (523)
                      .+..+.+++++|+..+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus       401 ~~~~~~~~~~~~~~vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l  453 (472)
T KOG1337|consen  401 TLRVFKALIDEDESVLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL  453 (472)
T ss_pred             hhcccchhhhhhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence            88889999999999998888889999999999999999999999998444433

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		523
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		3e-16
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		6e-07
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		7e-07

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 99/445 (22%), Positives = 192/445 (43%), Gaps = 50/445 (11%) Query: 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131 K+E+ DL W +NG V E + E+ + A+ D++A + VP Sbjct: 72 GKREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRK 125 Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188 L+ T+E N + L + +++ + LA +L+ E+ SFW PYI+ L + Sbjct: 126 LLXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-- 181 Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247 ++PL + E E+ YL + ++ + + R+Y +F + Q +P+ Sbjct: 182 -----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHA 229 Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKXXXXX 304 +P ++FT+E ++ A +V + + +R AL+PL + Sbjct: 230 NKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNL 289 Query: 305 XXXXXXXXXXRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVV 364 + ++AGE I ++Y G + N++ +I+ GF ++N +DR+ + Sbjct: 290 EDDRCECVALQDFRAGEQIYIFY-----------GTRSNAEFVIHSGFFFDNNSHDRVKI 338 Query: 365 EAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GY 415 + ++ D Y K V R G + VF +H E + +L +LR+ + Sbjct: 339 KLGVSKSDRLYAXKAEVLARAGIPTSSVFALHF-TEPPISAQLLAFLRVFCXTEEELKEH 397 Query: 416 VSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLH 475 + S + + + PVS E + L D L Y T+ ED+++L +++L Sbjct: 398 LLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLS 457 Query: 476 PKKRVATQLVRMEKKMLNACLQVTA 500 + + A +L EK++L ++ A Sbjct: 458 VRAKXAIKLRLGEKEILEKAVKSAA 482

PyMOL of 3smt

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		523
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	5e-77
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-68
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	1e-56
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  250 bits (638), Expect = 5e-77
 Identities = 96/450 (21%), Positives = 187/450 (41%), Gaps = 44/450 (9%)

Query: 67  SREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF 126
           S     K+E+   DL  W  +NG       +               + A+ D++A +   
Sbjct: 67  SVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEG------FGLRATRDIKAEELFL 120

Query: 127 SVPNSLVVTLERVLGNETIAELLTTNKLSEL---ACLALYLMYEKKQGKKSFWLPYIREL 183
            VP  L++T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L
Sbjct: 121 WVPRKLLMTVESAK-NSVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTL 178

Query: 184 DRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQ 243
             +        ++PL + E E+ YL  +    ++  + +   R+Y     V         
Sbjct: 179 PSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQT----HP 227

Query: 244 QYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAML 302
                   ++FT+E ++ A  +V +    +     +R   AL+PL       +       
Sbjct: 228 HANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGY 287

Query: 303 AAVDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRL 362
              DD  + V  + ++AGE I ++Y           G + N++ +I+ GF  ++N +DR+
Sbjct: 288 NLEDDRCECVALQDFRAGEQIYIFY-----------GTRSNAEFVIHSGFFFDNNSHDRV 336

Query: 363 VVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSD---- 418
            ++  ++  D  Y  K  V  R G  +  VF +H        + +L +LR+  +++    
Sbjct: 337 KIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEP-PISAQLLAFLRVFCMTEEELK 395

Query: 419 -----TSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYN 473
                 S +  + +      PVS   E  +   L D     L  Y  T+ ED+++L +++
Sbjct: 396 EHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHD 455

Query: 474 LHPKKRVATQLVRMEKKMLNACLQVTADMI 503
           L  + ++A +L   EK++L   ++  A   
Sbjct: 456 LSVRAKMAIKLRLGEKEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		523
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	98.88
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	98.84
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.74
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	96.9
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	95.6
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	94.61
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	94.38
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	93.85
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	93.59
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	93.05
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	92.62
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	92.44
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	91.6
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	91.22
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	90.79
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	90.45
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	89.71
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	89.05
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	88.69
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	85.08
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	84.81
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	84.6
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	82.75
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	80.14

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.4e-67  Score=568.52  Aligned_cols=398  Identities=24%  Similarity=0.366  Sum_probs=341.0

Q ss_pred             ccchhcHHHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCccCccCcccccCCchHHHhhcc
Q 009869           72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (523)
Q Consensus        72 ~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~l~~~l~~  151 (523)
                      +.+.+.+.+|++|++++|+.+++|+++.++.   .|   +||+|++||++|++|++||.+++||.+++..+ .++.++..
T Consensus        72 ~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~---~G---rGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~~  144 (497)
T 3smt_A           72 GKREDYFPDLMKWASENGASVEGFEMVNFKE---EG---FGLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYSQ  144 (497)
T ss_dssp             SCGGGGHHHHHHHHHHTTCCCTTEEEEEETT---TE---EEEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCCccceEEEEcCC---Cc---cEEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hccccccc
Confidence            4467889999999999999999999999863   45   58999999999999999999999999988753 35544432


Q ss_pred             CC---CChhHHHHHHHHHHHhcCCCCCcHHHHHhcccccCCCccccCCccccCHhHHhhccCCchHHHHHHHHHHHHHHH
Q 009869          152 NK---LSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY  228 (523)
Q Consensus       152 ~~---~~~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y  228 (523)
                      ..   ...+..|+++|++|+. |+.|+|+|||++||+       .+++|++|+++|+++|+||++...+.++...+.++|
T Consensus       145 ~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~  216 (497)
T 3smt_A          145 DRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY  216 (497)
T ss_dssp             CHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence            11   1346789999999995 899999999999999       579999999999999999999999988888888899


Q ss_pred             HHHHHHHHhhhhhhhcCCCC--CC-CCCcChhHHHHHHhhhhcceeeeccccc-cccccccccCCCccCCCCCCceeEee
Q 009869          229 NELDTVWFMAGSLFQQYPYD--IP-TEAFTFEIFKQAFVAVQSCVVHLQKVSL-ARRFALVPLGPPLLAYSSKCKAMLAA  304 (523)
Q Consensus       229 ~~l~~~~~~~~~l~~~~~~~--~~-~~~~t~~~f~wA~~~V~SRa~~~~~~~~-~~~~~LVPl~Dmlnhh~~~~~a~~~~  304 (523)
                      ..+...       +..+|..  ++ .+.+|+++|+||+++|+||+|.++..+. ....+|||++||+||+...+++.|+.
T Consensus       217 ~~~~~~-------~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~  289 (497)
T 3smt_A          217 AYFYKV-------IQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNL  289 (497)
T ss_dssp             HHHHHH-------C----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEET
T ss_pred             HHHHHH-------HHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeec
Confidence            877543       4444432  22 3579999999999999999998854322 12579999999998765555678888


Q ss_pred             eCCeEEEEEeccCCCCCeEEEecccccCCCccccCCCChHHHHHhcCcccCCCCCCeEEEEEecCCCCcChHHHHHHHHH
Q 009869          305 VDDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQR  384 (523)
Q Consensus       305 ~~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~~sN~eLLl~YGFv~~~Np~D~v~l~l~l~~~d~~~~~K~~lL~~  384 (523)
                      +++.++++|.++|++||||||+           ||+++|++||++|||+.++||+|.+.|.+.++.+|+++..|.++|+.
T Consensus       290 ~~~~~~~~a~~~i~~Geei~is-----------YG~~~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~~d~l~~~K~~~L~~  358 (497)
T 3smt_A          290 EDDRCECVALQDFRAGEQIYIF-----------YGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLAR  358 (497)
T ss_dssp             TTTEEEEEESSCBCTTCEEEEC-----------CCSCCHHHHHHHHSCCCTTCTTCEEEEEEECCTTSTTHHHHHHHHHH
T ss_pred             cCCeEEEEeCCccCCCCEEEEe-----------CCCCChHHHHHHCCCCCCCCCCceEEEEecCCCcchhHHHHHHHHHH
Confidence            8899999999999999999999           99999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEcCCccchHhhhhHHHHhhcCCChHHHHHHHHhc----------CCCCCCChhhHHHHHHHHHHHHHHH
Q 009869          385 NGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSL----------GPICPVSPCMERAVLDQLADYFKAR  454 (523)
Q Consensus       385 ~g~~~~~~f~l~~~~~~~~~~~Ll~~LRl~~~s~~~el~~~~~~~----------~~~~~~s~~nE~~vl~~L~~~l~~~  454 (523)
                      +|+.....|.++.++. +++.+|+++||+++++ ++|+..+....          ...+|+|.+||.++++.|...|..+
T Consensus       359 ~gl~~~~~f~l~~~~~-~~~~~Ll~~LRvl~~~-~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~  436 (497)
T 3smt_A          359 AGIPTSSVFALHFTEP-PISAQLLAFLRVFCMT-EEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLL  436 (497)
T ss_dssp             TTCCSEEEEEEESSSS-CSCHHHHHHHHHHTCC-HHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccceeeeecCCC-CCCHHHHHHHHHHhCC-HHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHH
Confidence            9999888999876643 4678999999999996 67888775432          1246899999999999999999999


Q ss_pred             HhcCCCChHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009869          455 LAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIM  504 (523)
Q Consensus       455 L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~eK~IL~~~l~~l~~~~~  504 (523)
                      |+.|+||++||+++|+++.++.|+++|+++|++||+||+++++.++....
T Consensus       437 L~~Y~TtieeDe~lL~~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~  486 (497)
T 3smt_A          437 LKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNRE  486 (497)
T ss_dssp             HHTCSSCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999999999999999999999866554

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		523
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	3e-33
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	7e-28

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  125 bits (313), Expect = 3e-33
 Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 43/289 (14%)

Query: 80  DLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERV 139
               W+ + G+   K  +K              + A +D+   D    VP  L +  + V
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLG-----LVALKDISRNDVILQVPKRLWINPDAV 61

Query: 140 LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLL 199
             +E        ++L     + L+L+ E+   + S W  Y   L ++        +S + 
Sbjct: 62  AASEIGRVC---SELKPWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIY 110

Query: 200 WSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIF 259
           WSE EL  L GS      +   E +K E  +L+    +           +  +  T + F
Sbjct: 111 WSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNK-------RLFPDPVTLDDF 163

Query: 260 KQAFVAVQSCVVHLQKVSLARRFALVPLGP-------PLLAYSSKCKAMLAAVDDAVQLV 312
             AF  ++S      +        +  L            AY  K  A L + D    L 
Sbjct: 164 FWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLK 223

Query: 313 VDRPYKAGESIVVWYNISFTGHDFKCGPQ-PNSKLLINYGFVDED-NPY 359
                KAGE + + Y                N++L ++YGF++ + N +
Sbjct: 224 SPLSVKAGEQVYIQY-----------DLNKSNAELALDYGFIEPNENRH 261

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		523
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.84
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	96.65
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	94.83
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	92.09
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	91.91
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	83.07

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=7.5e-40  Score=321.86  Aligned_cols=247  Identities=21%  Similarity=0.334  Sum_probs=199.2

Q ss_pred             hcHHHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCccCccCcccccCCchHHHhhccCCCC
Q 009869           76 EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLS  155 (523)
Q Consensus        76 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~~~it~~~~~~~~~l~~~l~~~~~~  155 (523)
                      .+++.|++|++++|+..+++.+.....  |.|   |||+|++||++||+|++||..++||.+++..+ .+.+.+.  ...
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~--~~G---rGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~   74 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVV--TEG---LGLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELK   74 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEE--TTE---EEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSC
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCC--Cce---eEEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcC
Confidence            467889999999999998887766432  345   58999999999999999999999999887654 3333332  356


Q ss_pred             hhHHHHHHHHHHHhcCCCCCcHHHHHhcccccCCCccccCCccccCHhHHhhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009869          156 ELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVW  235 (523)
Q Consensus       156 ~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~l~~~~  235 (523)
                      ++..++++|++|+. +..|.|+||+++||+       ...+|++|+.++++.|+++.+...+....+.++++|.++... 
T Consensus        75 ~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (261)
T d2h2ja2          75 PWLSVILFLIRERS-REDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQE-  145 (261)
T ss_dssp             HHHHHHHHHHHHHH-CTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHh-CCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            78999999999994 999999999999999       478999999999999999999999999999999999887653 


Q ss_pred             HhhhhhhhcCCCCCCCCCcChhHHHHHHhhhhcceeeeccccccccccccccCCCccCCC-CCCce---------eEeee
Q 009869          236 FMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYS-SKCKA---------MLAAV  305 (523)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~~t~~~f~wA~~~V~SRa~~~~~~~~~~~~~LVPl~Dmlnhh~-~~~~a---------~~~~~  305 (523)
                           ++..++. ...+.++++.|.||+++|.||+|..++.   ...+|+|++||+||.. +++..         .....
T Consensus       146 -----~~~~~~~-~~~~~~~~~~~~~a~~~v~sr~~~~~~~---~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~  216 (261)
T d2h2ja2         146 -----IILPNKR-LFPDPVTLDDFFWAFGILRSRAFSRLRN---ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSW  216 (261)
T ss_dssp             -----TTTTTTT-TCCSCCCHHHHHHHHHHHHHHSBCCC------CCBCCTTGGGCEECSSCCSCCCCCC----------
T ss_pred             -----HHhhhhh-hccCccCHHHHHHHHHHhhccccccccc---ccccchhhhHHhhcCCCCCcccccccccCcccccCC
Confidence                 2333332 2345689999999999999999987542   4579999999998753 23211         12234


Q ss_pred             CCeEEEEEeccCCCCCeEEEecccccCCCccccCC-CChHHHHHhcCcccCC-CCC
Q 009869          306 DDAVQLVVDRPYKAGESIVVWYNISFTGHDFKCGP-QPNSKLLINYGFVDED-NPY  359 (523)
Q Consensus       306 ~~~~~l~a~r~i~~GeEv~isY~~~~~~~~~~YG~-~sN~eLLl~YGFv~~~-Np~  359 (523)
                      ++.++|+|.|+|++||||||+           ||+ ++|++||.+||||+++ |||
T Consensus       217 ~~~~~l~A~r~I~~GEEI~is-----------YG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         217 DYLFSLKSPLSVKAGEQVYIQ-----------YDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             -CEEEEECSSCCCTTSBCEEC-----------SCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CcEEEEEECCCCCCCCEEEEe-----------cCCCCCHHHHHHhCCCCCCCCCCC
Confidence            578999999999999999999           995 7999999999999876 987

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure