Citrus Sinensis ID: 009963
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPI5 | 725 | Peroxisomal fatty acid be | yes | no | 0.871 | 0.626 | 0.790 | 0.0 | |
| Q39659 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.871 | 0.626 | 0.784 | 0.0 | |
| O49809 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.871 | 0.626 | 0.777 | 0.0 | |
| Q9ZPI6 | 721 | Peroxisomal fatty acid be | no | no | 0.859 | 0.621 | 0.564 | 1e-154 | |
| Q8W1L6 | 726 | Peroxisomal fatty acid be | no | no | 0.904 | 0.648 | 0.533 | 1e-151 | |
| A8A2L0 | 714 | Fatty acid oxidation comp | yes | no | 0.821 | 0.599 | 0.342 | 9e-61 | |
| Q08426 | 723 | Peroxisomal bifunctional | yes | no | 0.896 | 0.645 | 0.319 | 9e-60 | |
| A3CYJ4 | 716 | Fatty acid oxidation comp | yes | no | 0.825 | 0.600 | 0.342 | 1e-59 | |
| A1RDW6 | 716 | Fatty acid oxidation comp | yes | no | 0.825 | 0.600 | 0.340 | 1e-59 | |
| A4Y1B6 | 716 | Fatty acid oxidation comp | yes | no | 0.825 | 0.600 | 0.340 | 1e-59 |
| >sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/454 (79%), Positives = 411/454 (90%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKL 619
|
Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/454 (78%), Positives = 408/454 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR+IF ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVA AT QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK+
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKL 619
|
Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2 | Back alignment and function description |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/454 (77%), Positives = 407/454 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+ +++ +T K
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
++KFGMPMGPFRL DLVGFGVAIAT QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD+RRKA PDPE+K +I+KARS+SG DPK+
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKL 619
|
Brassica napus (taxid: 3708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 253/448 (56%), Positives = 337/448 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SK + EE H LGL+DA+V P ++ST+R+WALDI E R+P++ +L++TDKI L
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR I K +R A+K APN+ CI+V+E G++ G +G+ KEAE F++L+ S+T K
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN V+LKE+N
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL GI V AN++S V +GK+TQ+K K +SL GVLDY F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L G DL+ ID
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
IT FG+P+GPF+L DL G G+ +A G + + + +R ++S + ++ + R G+ +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGV 448
Y+Y++ K PDP V +EK+R ++ +
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNI 610
|
Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/484 (53%), Positives = 349/484 (72%), Gaps = 13/484 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SK + +E GLVDA+ +P++L+ +R WAL+I +R+PW+ +L +TD++ L
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR + AR QA+K A NL C+DV+E GV+ G AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN V+LKEVN
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+ G + ANL+ VK+G +T++K K +SLL G LDY FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV G D++ IDR
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+ FGMPMGPF+L DL G+GVA+A + F R S ++ +M ++ R G++ KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582
Query: 421 YLYDERRKASPDPEVKKFIEK----ARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTG 476
YLY++ K PDP V+ I++ A++M G + +TL+ + + +F
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYRRCAKTMPG---------GKPVTLSDQDILEMIFFPVV 633
Query: 477 EESC 480
E+C
Sbjct: 634 NEAC 637
|
Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 154/450 (34%), Positives = 237/450 (52%), Gaps = 22/450 (4%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EP 58
M+LT K ++ ++A LGLVD VV P+ ++ A A+++ + RP L ++I P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVV-PHSILLEA---AVELAKKDRPSSRPLPVRERILAGP 222
Query: 59 LGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
LG A + K N ++VVE G+ G +G EA F +L +
Sbjct: 223 LGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQS 282
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA-TALILSNYPVILKE 177
++L IFFA K PG +D AP + V ILGGGLMG+GIA + PV +K+
Sbjct: 283 QALRSIFFASTDVKKDPG-SDAPPAP--LNSVGILGGGLMGAGIAYVTACKAGLPVRIKD 339
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+N + + + L+ +V++ + + +K ++L++G DY F D++IEA+ EN
Sbjct: 340 INPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFEN 399
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
+ LKQQ+ A++E+ C H I ASNTS++ + I ++++G HFFSP MPL+EI
Sbjct: 400 LELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEI 459
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ TS Q I + + KK KTPIVV + GF VNR+ PY A ++ G + I
Sbjct: 460 IPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHI 519
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFI----ENFPER-TYKSMIIPIMQEDKRA 412
D A+ KFG P+GP +L D VG I TG + I + ER + + ++ + D R
Sbjct: 520 DAALVKFGFPVGPIQLLDEVG----IDTGTKIIPVLEAAYGERFSAPANVVSSILNDDRK 575
Query: 413 GETTRKGFYLYDERRKASP---DPEVKKFI 439
G +GFYLY ++ + S DP + I
Sbjct: 576 GRKNGRGFYLYGQKGRKSKKQVDPAIYPLI 605
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Escherichia coli O9:H4 (strain HS) (taxid: 331112) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 159/497 (31%), Positives = 247/497 (49%), Gaps = 30/497 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPN---QLVSTARQWALDILEHRRPWVATLYKTDKIE 57
++ + + + +EA LG++D VV + + + A++ + LE RR I+
Sbjct: 151 LITSGRRILADEALKLGILDKVVNSDPVEEAIRFAQRVSDQPLESRR------LCNKPIQ 204
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
L IF A + R+Q P C+ V+A V G++KE E F LL+S
Sbjct: 205 SLPNMDSIFSEALLKMRRQHPGCLAQEACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQ 264
Query: 118 CKSLVHIFFAQRGTSK---VPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
++L + FFA+R +K G + + R V V ++G G MG GI + + PVI
Sbjct: 265 ARALQYAFFAERKANKWSTPSGASWKTASARPVSSVGVVGLGTMGRGIVISFARARIPVI 324
Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
+ ++ L + + L+ K + + + LT + + VD+VIEA+
Sbjct: 325 AVDSDKNQLATANKMITSVLEKEASKMQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAV 382
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E +SLK+Q+FA+L C P L +NTS +D++ I T ++G HFFSPAHVM L
Sbjct: 383 FEEMSLKKQVFAELSAVCKPEAFLCTNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKL 442
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
LE++ + +SP I ++++ KKIKK +VVGNC GF NRM PY A+ L+E G+
Sbjct: 443 LEVIPSQYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKP 502
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER---TYKSMIIP 404
+D+ + +FG MGPFR++DL G V TG + P R + IP
Sbjct: 503 EEVDQVLEEFGFKMGPFRVSDLAGLDVGWKSRKGQGLTGPTLLPGTPARKRGNRRYCPIP 562
Query: 405 -IMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKVL-QSRQL 460
++ E R G+ T KG+Y YD+ R PDP + KF+ + R I+P+ + Q L
Sbjct: 563 DVLCELGRFGQKTGKGWYQYDKPLGRIHKPDPWLSKFLSRYRKTH--HIEPRTISQDEIL 620
Query: 461 TLTLRLLWAWVFHLTGE 477
L L F + GE
Sbjct: 621 ERCLYSLINEAFRILGE 637
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A3CYJ4|FADB_SHEB5 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
T K + E+A +G VDAVVAP L + A Q D + + W A + L +
Sbjct: 169 TGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228
Query: 64 EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+ F A+ A H P+ + V+E G LQ E + F KL +++ K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+ IF + G + V A+LG G+MG GIA P+++K++ +
Sbjct: 289 LIGIFLNDQFVKGK--AKKAGKLAKEVNNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
L+ G+ L ++V +G+ T EK K ++ +T LDY + K D+V+EA++E+ +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKI 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
K Q+ A++E Y I+ASNTSTI +NL+ + +R G HFF+P H MPL+EI+R
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEIIRG 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D ID+
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526
Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
+ K FG PMGP L D+VG E FP+R KS I +M E+KR G+
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586
Query: 418 KGFYLYDERRKASPDPEV 435
KGFY+Y + P +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A1RDW6|FADB_SHESW Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
T + E+A +G VDAVVAP L + A Q D + + W A + L +
Sbjct: 169 TGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228
Query: 64 EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+ F A+ A H P+ + V+E G LQ E + F KL +++ K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+ IF + G + VK A+LG G+MG GIA P+++K++ +
Sbjct: 289 LIGIFLNDQLVKGK--AKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
L+ G+ L ++V +G+ T EK K ++ +T LDY + K D+V+EA++E+ +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKI 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
K Q+ A++E Y I+ASNTSTI +NL+ + +R G HFF+P H MPL+E++R
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRG 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D ID+
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526
Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
+ K FG PMGP L D+VG E FP+R KS I +M E+KR G+
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586
Query: 418 KGFYLYDERRKASPDPEV 435
KGFY+Y + P +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella sp. (strain W3-18-1) (taxid: 351745) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A4Y1B6|FADB_SHEPC Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 224/438 (51%), Gaps = 8/438 (1%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
T + E+A +G VDAVVAP L + A Q D + + W A + L +
Sbjct: 169 TGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228
Query: 64 EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+ F A+ A H P+ + V+E G LQ E + F KL +++ K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+ IF + G + VK A+LG G+MG GIA P+++K++ +
Sbjct: 289 LIGIFLNDQLVKGK--AKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
L+ G+ L ++V +G+ T EK K ++ +T LDY + K D+V+EA++E+ +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKI 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
K Q+ A++E Y I+ASNTSTI +NL+ + +R G HFF+P H MPL+E++R
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRG 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D ID+
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526
Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
+ K FG PMGP L D+VG E FP+R KS I +M E+KR G+
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586
Query: 418 KGFYLYDERRKASPDPEV 435
KGFY+Y + P +V
Sbjct: 587 KGFYVYSVDSRGKPKKDV 604
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| 224107106 | 726 | predicted protein [Populus trichocarpa] | 0.871 | 0.625 | 0.848 | 0.0 | |
| 225431755 | 724 | PREDICTED: glyoxysomal fatty acid beta-o | 0.911 | 0.656 | 0.825 | 0.0 | |
| 296083347 | 765 | unnamed protein product [Vitis vinifera] | 0.911 | 0.620 | 0.825 | 0.0 | |
| 224130412 | 726 | predicted protein [Populus trichocarpa] | 0.871 | 0.625 | 0.843 | 0.0 | |
| 356521845 | 724 | PREDICTED: glyoxysomal fatty acid beta-o | 0.882 | 0.635 | 0.826 | 0.0 | |
| 351723429 | 723 | peroxisomal fatty acid beta-oxidation mu | 0.882 | 0.636 | 0.820 | 0.0 | |
| 357478819 | 724 | Glyoxysomal fatty acid beta-oxidation mu | 0.880 | 0.633 | 0.810 | 0.0 | |
| 171854673 | 725 | putative glyoxysomal fatty acid beta-oxi | 0.911 | 0.655 | 0.787 | 0.0 | |
| 356564184 | 722 | PREDICTED: peroxisomal fatty acid beta-o | 0.880 | 0.635 | 0.799 | 0.0 | |
| 297829230 | 723 | hypothetical protein ARALYDRAFT_478006 [ | 0.871 | 0.627 | 0.792 | 0.0 |
| >gi|224107106|ref|XP_002314377.1| predicted protein [Populus trichocarpa] gi|222863417|gb|EEF00548.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/454 (84%), Positives = 428/454 (94%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDILE RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDILERRRPWIASLYKTEKLDSLG 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFAR Q RK+APNLTHPIVCIDV+E G+VSGPR GL KE E F +L+RS+TCKS
Sbjct: 227 EAREIFKFAREQVRKRAPNLTHPIVCIDVIEHGIVSGPRDGLYKELESFHELVRSDTCKS 286
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQRGT+KVPG+TDLGL PRRVKKVA+LGGGLMGSGIATAL+LSNYPVILKEVN
Sbjct: 287 LIHIFFAQRGTTKVPGITDLGLVPRRVKKVAVLGGGLMGSGIATALVLSNYPVILKEVNN 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+AGIGRVRANLQSRVKKG+MTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGRMTQEKFEKTMSLLKGALDYESFKDVDMVIEAVIENVSL 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LLVE G DLY ID+
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAALLLVEHGADLYQIDKV 526
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 527 ITKFGMPMGPFRLVDLVGFGVAIATGTQFVVNFPERTYKSMLIPLMQEDKRAGETTRKGF 586
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD+RRKA PDPE++K+IEKAR++SGVA DPK+
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARNISGVANDPKL 620
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431755|ref|XP_002270067.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/480 (82%), Positives = 435/480 (90%), Gaps = 5/480 (1%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 165 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 224
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 225 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 284
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 285 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 344
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 345 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 404
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 405 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 464
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 465 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 524
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 525 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 584
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEESC 480
Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK+++ L+ + + +F E+C
Sbjct: 585 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMK-----LSDKDIVEMIFFPVVNEAC 639
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083347|emb|CBI22983.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/480 (82%), Positives = 435/480 (90%), Gaps = 5/480 (1%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 206 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 265
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 266 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 325
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 326 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 385
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 386 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 445
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 446 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 505
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 506 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 565
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 566 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 625
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEESC 480
Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK+++ L+ + + +F E+C
Sbjct: 626 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMK-----LSDKDIVEMIFFPVVNEAC 680
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130412|ref|XP_002328602.1| predicted protein [Populus trichocarpa] gi|222838584|gb|EEE76949.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/454 (84%), Positives = 426/454 (93%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDI E RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDIFECRRPWIASLYKTEKLDSLG 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFARAQA+K+APNL HPIVCI+VVE G+VSGPRAGL KE E FQ+L+RS+ KS
Sbjct: 227 EAREIFKFARAQAQKRAPNLLHPIVCINVVEHGIVSGPRAGLYKEFESFQELVRSDISKS 286
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVHIFFA GT+KVPG+TDLG PR VKKVA+LGGGLMGSGIATALILSNYPVILKEVN+
Sbjct: 287 LVHIFFALHGTTKVPGITDLGFVPRLVKKVAVLGGGLMGSGIATALILSNYPVILKEVND 346
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+AGIGRVRANLQSRVKKGKMTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGKMTQEKFEKTMSLLKGSLDYESFKDVDMVIEAVIENVSL 406
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE G DLY IDR
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAIFLVEHGVDLYQIDRV 526
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRLADLVGFGVAIATGMQF+ENFPERTYKSM++P+MQEDKR GETT KGF
Sbjct: 527 ISKFGMPMGPFRLADLVGFGVAIATGMQFVENFPERTYKSMLLPLMQEDKRGGETTCKGF 586
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD+RRKA PDPE++K+IEKARS+SGVA+DPK+
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARSISGVAVDPKL 620
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521845|ref|XP_003529561.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/462 (82%), Positives = 432/462 (93%), Gaps = 2/462 (0%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVD+VIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDLVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIVGAHFFSPAHVMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTSPQVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LLVERG D+Y IDR
Sbjct: 464 KQTSPQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRI 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRLADLVGFGVAIATG QFI+NFPERTYKSM+IP++QED RAGETTRKGF
Sbjct: 524 ITKFGMPMGPFRLADLVGFGVAIATGTQFIQNFPERTYKSMLIPLLQEDNRAGETTRKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV--LQSRQL 460
YLYD++RKASPDPE+K +IEKARS+SGV++DPK+ LQ + +
Sbjct: 584 YLYDDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDI 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351723429|ref|NP_001234975.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] gi|167962162|dbj|BAG09370.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/462 (82%), Positives = 430/462 (93%), Gaps = 2/462 (0%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDMVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T ++DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKTQDRIVGAHFFSPAHVMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTS QVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LLVERG D+Y IDR
Sbjct: 464 KQTSAQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRV 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+I ++QEDKRAGETT KGF
Sbjct: 524 ITKFGMPMGPFRLMDLVGFGVAIATGMQFIQNFPERTYKSMLISLLQEDKRAGETTHKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV--LQSRQL 460
YLY+++RKASPDPE+K +IEKARS+SGV++DPK+ LQ + +
Sbjct: 584 YLYNDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDI 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478819|ref|XP_003609695.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] gi|355510750|gb|AES91892.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/460 (81%), Positives = 425/460 (92%), Gaps = 1/460 (0%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKG++A S GLVD +V+P+QLV+TARQWALDIL+ RRPW+A+LYKT+KIEPLG
Sbjct: 164 MMLTSKPVKGKDAFSSGLVDGLVSPDQLVNTARQWALDILDRRRPWIASLYKTEKIEPLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQARKQAPNL HP+VCIDV+EAG+VSGPRAGL KEAE F L++S+TCKS
Sbjct: 224 EAREILKFARAQARKQAPNLKHPLVCIDVIEAGIVSGPRAGLWKEAEAFDALVQSDTCKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQRGTSKVPGVTD GL PR VKKVAILGGGLMGSGIATALILSNY VILKEVNE
Sbjct: 284 LIHIFFAQRGTSKVPGVTDRGLVPRPVKKVAILGGGLMGSGIATALILSNYSVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI R++ANLQSRVKKG +TQE+FEK SL+ G LDY+SF+DVDMVIEA+IENVSL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGNLTQERFEKAFSLVKGSLDYDSFRDVDMVIEAVIENVSL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF-SPAHVMPLLEIVR 299
KQQIFADLEKYCPPHCIL SNTSTIDL+LIGE+T S+DRI+GAHFF PAHVMPLLEIVR
Sbjct: 404 KQQIFADLEKYCPPHCILGSNTSTIDLDLIGEKTKSQDRIIGAHFFRCPAHVMPLLEIVR 463
Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
T +TSPQVIVDLLDI KKIKKTP+VVGNCTGFAVNR+FFPYTQA LLVERG D+Y ID+
Sbjct: 464 TKRTSPQVIVDLLDISKKIKKTPVVVGNCTGFAVNRVFFPYTQATLLLVERGADVYQIDK 523
Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKG 419
A+TKFGMPMGP RL DLVGFGVA+ATG QF++NFPERTYKSM+IP++QEDKRAGETTRKG
Sbjct: 524 AVTKFGMPMGPLRLCDLVGFGVAVATGSQFVQNFPERTYKSMLIPLLQEDKRAGETTRKG 583
Query: 420 FYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQ 459
FYLYD+RRKASPDPE+KKFIEKARS+SGV++DP +++ ++
Sbjct: 584 FYLYDDRRKASPDPELKKFIEKARSISGVSVDPMLVKLQE 623
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854673|dbj|BAG16526.1| putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/480 (78%), Positives = 427/480 (88%), Gaps = 5/480 (1%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVKGEEA +LGLVDAVV NQL+ TAR+WALDILE R+PWVA+L+KTDKIEPLG
Sbjct: 166 MILTSKPVKGEEAVNLGLVDAVVPSNQLLGTARKWALDILECRKPWVASLHKTDKIEPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREIFKFAR Q RKQAPNL H +V IDV+E G+VSGP AGL KEAE FQ LL S+TCK+
Sbjct: 226 EAREIFKFARVQTRKQAPNLQHLLVVIDVIEEGIVSGPLAGLWKEAEAFQALLHSDTCKA 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LV++FFAQR T+KVPGVTDLGL PRR+KKVAILGGGLMGSGIATAL+ S YPVILKEVN+
Sbjct: 286 LVNVFFAQRATTKVPGVTDLGLKPRRIKKVAILGGGLMGSGIATALLRSGYPVILKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AG+GRV+ANLQS VKKGKM+QEKFEKT+SLL G LDYE F+DVDMVIEA+IENVSL
Sbjct: 346 KFLQAGLGRVKANLQSSVKKGKMSQEKFEKTLSLLKGALDYEGFRDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQ+FADLEKYCP HCILASNTSTIDLNLIGE+T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQVFADLEKYCPSHCILASNTSTIDLNLIGEKTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ+IVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LLVERG D++ IDR
Sbjct: 466 QKTSPQIIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAALLLVERGADVFRIDRI 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 526 ITKFGMPMGPFRLCDLVGFGVAIATGGQFVMNFPERTYKSMLIPLMQEDKRAGETTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEESC 480
Y+YD+RRKASPDPE+KK+IEKAR MSGV ID K+ + L+ + + +F E+C
Sbjct: 586 YVYDDRRKASPDPEIKKYIEKAREMSGVTIDHKMAK-----LSDKDIIEMIFFPVVNEAC 640
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564184|ref|XP_003550336.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/459 (79%), Positives = 419/459 (91%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKPVKG+EA SLGLVD +++P+ LV+TA QWALDI+ RRPW+A+LYKTDK+EPLG
Sbjct: 163 MMLTSKPVKGKEAFSLGLVDGLMSPDDLVNTACQWALDIMGRRRPWIASLYKTDKLEPLG 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFARAQ +K+APNL HP+VCIDV+EAGVV+GPRAGL KE E + L++S+T KS
Sbjct: 223 EAREILKFARAQVQKRAPNLQHPLVCIDVIEAGVVAGPRAGLWKEVEASEGLIKSDTSKS 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGTSKVPGVTD GL PR VKKVAI+GGGLMGSGIATALILS+YP+ILKEVNE
Sbjct: 283 LIHVFFSQRGTSKVPGVTDCGLVPRHVKKVAIIGGGLMGSGIATALILSSYPIILKEVNE 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGI R++ANLQSRVKKGK+TQE FE T+SLL G LDYESFKDVDMVIEA++ENVSL
Sbjct: 343 KFLEAGINRIKANLQSRVKKGKLTQENFENTVSLLKGTLDYESFKDVDMVIEAVVENVSL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCPPHCILASNTSTIDLNLIGERT S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 403 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTKSQDRIVGAHFFSPAHVMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
QTS QV+VD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA LVE G D+Y IDR
Sbjct: 463 KQTSAQVVVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLFLVEHGADVYQIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+IP++QEDKRAGETTRKGF
Sbjct: 523 ITKFGMPMGPFRLVDLVGFGVAIATGMQFIQNFPERTYKSMLIPLLQEDKRAGETTRKGF 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQ 459
YLYD++ K SPDPE+K +IEKARS +GV++DPK+++ ++
Sbjct: 583 YLYDDKCKPSPDPELKNYIEKARSFTGVSVDPKLVKLQE 621
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829230|ref|XP_002882497.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] gi|297328337|gb|EFH58756.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/454 (79%), Positives = 414/454 (91%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAV+ P +L++TAR+WALDI+E R+PWV+++ KTDK+ LG
Sbjct: 164 MILTSKPVKAEEGHSLGLIDAVMPPAELLTTARRWALDIVERRKPWVSSVSKTDKLPSLG 223
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFAR Q +K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T KS
Sbjct: 224 EAREILKFARGQTQKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKS 283
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GLAPR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LIHVFFSQRGTAKVPGVTDRGLAPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 403
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 404 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 463
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 464 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 523
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 524 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 583
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+
Sbjct: 584 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKL 617
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| TAIR|locus:2077542 | 725 | MFP2 "multifunctional protein | 0.871 | 0.626 | 0.790 | 6.1e-197 | |
| UNIPROTKB|O49809 | 725 | O49809 "Glyoxysomal fatty acid | 0.871 | 0.626 | 0.777 | 1.8e-196 | |
| UNIPROTKB|Q39659 | 725 | Q39659 "Glyoxysomal fatty acid | 0.871 | 0.626 | 0.784 | 2.4e-195 | |
| TAIR|locus:2119891 | 721 | AIM1 "ABNORMAL INFLORESCENCE M | 0.859 | 0.621 | 0.564 | 3.1e-138 | |
| UNIPROTKB|Q8W1L6 | 726 | MFP "Peroxisomal fatty acid be | 0.850 | 0.610 | 0.566 | 1.4e-135 | |
| TIGR_CMR|SPO_0772 | 698 | SPO_0772 "enoyl-CoA hydratase/ | 0.836 | 0.624 | 0.360 | 9.4e-66 | |
| TIGR_CMR|SO_0021 | 716 | SO_0021 "fatty oxidation compl | 0.815 | 0.593 | 0.347 | 2.6e-63 | |
| UNIPROTKB|Q48GW3 | 721 | fadB "Fatty acid oxidation com | 0.823 | 0.595 | 0.328 | 4.2e-63 | |
| TIGR_CMR|SO_3088 | 707 | SO_3088 "fatty oxidation compl | 0.813 | 0.599 | 0.356 | 1.3e-61 | |
| UNIPROTKB|P28793 | 715 | fadB "Fatty acid oxidation com | 0.802 | 0.584 | 0.347 | 1.5e-60 |
| TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
Identities = 359/454 (79%), Positives = 411/454 (90%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKL 619
|
|
| UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)] | Back alignment and assigned GO terms |
|---|
Score = 1885 (668.6 bits), Expect = 1.8e-196, Sum P(2) = 1.8e-196
Identities = 353/454 (77%), Positives = 407/454 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+ +++ +T K
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
++KFGMPMGPFRL DLVGFGVAIAT QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
YLYD+RRKA PDPE+K +I+KARS+SG DPK+
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKL 619
|
|
| UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 356/454 (78%), Positives = 408/454 (89%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR+IF ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVA AT QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKV 454
Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK+
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKL 619
|
|
| TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 253/448 (56%), Positives = 337/448 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+L SK + EE H LGL+DA+V P ++ST+R+WALDI E R+P++ +L++TDKI L
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR I K +R A+K APN+ CI+V+E G++ G +G+ KEAE F++L+ S+T K
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN V+LKE+N
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL GI V AN++S V +GK+TQ+K K +SL GVLDY F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L G DL+ ID
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
IT FG+P+GPF+L DL G G+ +A G + + + +R ++S + ++ + R G+ +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGV 448
Y+Y++ K PDP V +EK+R ++ +
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNI 610
|
|
| UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 251/443 (56%), Positives = 333/443 (75%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MML SK + +E GLVDA+ +P++L+ +R WAL+I +R+PW+ +L +TD++ L
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAR + AR QA+K A NL C+DV+E GV+ G AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN V+LKEVN
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
+FL+ G + ANL+ VK+G +T++K K +SLL G LDY FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
+TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV G D++ IDR
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+ FGMPMGPF+L DL G+GVA+A + F R S ++ +M ++ R G++ KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582
Query: 421 YLYDERRKASPDPEVKKFIEKAR 443
YLY++ K PDP V+ I++ R
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYR 605
|
|
| TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 164/455 (36%), Positives = 243/455 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVA--PNQL-VSTARQWALDILEHRRPWVATLYKTDKIE 57
M+ T + V+ +EA LG++D V P ++ +S R+ LD RRP V +
Sbjct: 151 MITTGRHVRADEALRLGVIDRVAEGEPREIGLSYLRE-LLDEGAPRRP-VGEM------- 201
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGP-RAGLQKEAEDFQKLLRSE 116
P + A RK L+ P + V+A + AGL++E E F +L+ S+
Sbjct: 202 PAPAPVDFDAIYAAVLRKGRGQLS-PATAVRAVQAACEAESFAAGLKRERELFMELMNSD 260
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
+ L+H FFA R K+P + G+APR + + ++GGG MG+GIATA +LS V +
Sbjct: 261 QREGLIHAFFADRAVGKLPELE--GVAPRPLAAIGVIGGGTMGAGIATAALLSGLSVTML 318
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK-TISLLTGVLDYESFKDVDMVIEAII 235
E+ + EA GR+ NL +K+GK+T ++F+ T LT +DY++ D D+VIEA+
Sbjct: 319 EMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNLTTKALTLAIDYDALADADLVIEAVF 378
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E++ +K+Q+F L+ C P +LASNTS +D+N I T ++G HFFSPAHVM LL
Sbjct: 379 EDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQIAAVTSRPQDVLGLHFFSPAHVMKLL 438
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E+V +QT+P V +GK++ K + G C GF NR+ Y A ++ G Y
Sbjct: 439 EVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDGFIGNRILSVYRTCADHMILDGASPY 498
Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF-IENFPERTYKSMIIPIMQEDKRAGE 414
ID A+ +FG MGPF +ADL G + A + E R S + E G+
Sbjct: 499 QIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKRAEGLDPRARDSAYADKLCEAGHFGQ 558
Query: 415 TTRKGFYLYDERRKAS-PDPEVKKFIEKARSMSGV 448
T KG+Y Y KA P+PEV IE R+ G+
Sbjct: 559 KTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGI 593
|
|
| TIGR_CMR|SO_0021 SO_0021 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 154/443 (34%), Positives = 230/443 (51%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
T + E+A +G VDAVVAP L A Q D + + W A + K+ PL
Sbjct: 169 TGNEQRAEDALKVGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQR--KLSPLTLPK 226
Query: 61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
EA F A+ A + P+ ++VVE G LQ E + F KL +++
Sbjct: 227 LEAMMSFTTAKGMVFSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVA 286
Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
K+L+ IF +G +K G LA + V A+LG G+MG GIA P+++
Sbjct: 287 KALIGIFLNDQFVKGKAKKAGK----LA-KAVNSAAVLGAGIMGGGIAYQSASKGTPIVM 341
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++ + L+ G+ L ++V +G+ T EK K ++ +T L+Y K D+V+EA++
Sbjct: 342 KDIAQPALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVV 401
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E+ +K Q+ A++E+Y I+ASNTSTI ++L+ + +R G HFF+P H MPL+
Sbjct: 402 EHPKVKAQVLAEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLV 461
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R +S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 462 EVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFA 521
Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
ID+ + K FG PMGP L D+VG E FP+R KS I +M E+KR
Sbjct: 522 AIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRL 581
Query: 413 GETTRKGFYLYDERRKASPDPEV 435
G+ KGFY Y + P +V
Sbjct: 582 GQKNGKGFYAYSVDSRGKPKKDV 604
|
|
| UNIPROTKB|Q48GW3 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 145/442 (32%), Positives = 230/442 (52%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY-KTDKIEPLGEA 62
+ K E+A +G VDAVVAP +L + A + + A K DK++ L
Sbjct: 170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQPKLDKLK-LNAI 228
Query: 63 REIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCK 119
++ F A+ A + PN P+ I ++ G L+ EA F K+ ++ +
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMAKTSAAQ 288
Query: 120 SLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVN 179
SL+ +F + K D + VK+ A+LG G+MG GIA + P+++K++
Sbjct: 289 SLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIR 346
Query: 180 EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239
E+ ++ G+ L R++KG++T K + ++ + L Y F +VD+V+EA++EN
Sbjct: 347 EEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVR 299
+KQ + A++E H ILASNTSTI ++L+ + + VG HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
++S + + + +K+ K PIVV +C GF VNR+ FPY LV G D ID+
Sbjct: 467 GEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDK 526
Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTR 417
+ KFG PMGP L D+VG E FP+R + ++ + E KR G+
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNG 586
Query: 418 KGFYLYDERRKASP----DPEV 435
KGFY Y+ +K P DP V
Sbjct: 587 KGFYAYETDKKGKPKKVNDPAV 608
|
|
| TIGR_CMR|SO_3088 SO_3088 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 154/432 (35%), Positives = 226/432 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MMLT K ++ ++A +GLV+ VV L+ TA + AL + +P +L +E G
Sbjct: 167 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVN-QLLEGTG 225
Query: 61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
R I + A+ A+K N P ID V G+ G + GL+ EA F +L+ S+
Sbjct: 226 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKES 285
Query: 119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
++L IFFA K G G PR+VKK ILGGGLMG GIA+ + P +K+
Sbjct: 286 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 343
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+NEK L + L VK+ MT + ++L+T +Y+ KD D+V+EA+ E+
Sbjct: 344 INEKGLSNALSYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFED 403
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK Q+ D+E+ C H I ASNTS++ + I + + ++G H+FSP MPL+E+
Sbjct: 404 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 463
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYL 356
+ +TSP+ I + +K KTPIVV + GF VNR+ Y +AA LL+E G +
Sbjct: 464 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLE-GQSVEH 522
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
+D+A+ KFG P+GP L D VG V + ER + D R G
Sbjct: 523 LDKALVKFGFPVGPITLLDEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKN 582
Query: 417 RKGFYLYDERRK 428
KGFY Y K
Sbjct: 583 GKGFYQYGAASK 594
|
|
| UNIPROTKB|P28793 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas fragi (taxid:296)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 151/435 (34%), Positives = 224/435 (51%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
+ K + E+A + VDAVV ++L + A LD R+P + L K + I
Sbjct: 170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228
Query: 57 EPLGEAREIFK-FARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
E + A E K F QA PN P+ I ++ G L+ EA F KL ++
Sbjct: 229 EQM-MAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284
Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
L+ +F + K V D +A + VK+ A+LG G+MG GIA P+++
Sbjct: 285 SASNCLIGLFLNDQELKKKAKVYDK-IA-KDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++NE +E G+ L RV KG+MT K + ++ + L Y F +VD+V+EA++
Sbjct: 343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
EN +KQ + A++E + ILASNTSTI ++L+ + + VG HFF+P H+MPL+
Sbjct: 403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R ++S + + KK+ K PIVV +C GF VNR+ FPY LV G D
Sbjct: 463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522
Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAG 413
ID+ + KFG PMGP L D+VG E FP+R + I + E KR G
Sbjct: 523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582
Query: 414 ETTRKGFYLYDERRK 428
+ KGFY Y+ +K
Sbjct: 583 QKNGKGFYAYEADKK 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O49809 | MFPA_BRANA | 1, ., 1, ., 1, ., 3, 5 | 0.7775 | 0.8714 | 0.6262 | N/A | no |
| Q39659 | MFPA_CUCSA | 1, ., 1, ., 1, ., 3, 5 | 0.7841 | 0.8714 | 0.6262 | N/A | no |
| Q9ZPI5 | MFP2_ARATH | 1, ., 1, ., 1, ., 3, 5 | 0.7907 | 0.8714 | 0.6262 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 521 | |||
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-98 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 1e-97 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 3e-95 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 1e-85 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 3e-82 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 2e-75 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 2e-74 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 2e-71 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 9e-62 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 3e-55 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 6e-53 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 5e-52 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 2e-50 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 1e-47 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 1e-47 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 3e-44 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 9e-38 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 1e-22 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 4e-21 | |
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 1e-20 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 2e-13 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 1e-07 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 1e-07 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 3e-05 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 2e-04 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 3e-04 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 5e-04 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 9e-04 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 0.002 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 0.002 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 312 bits (803), Expect = 1e-98
Identities = 161/461 (34%), Positives = 235/461 (50%), Gaps = 52/461 (11%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-DILEHRR-PWVATLYKTDKIEP 58
M+LT K ++ ++A LGLVD VV + L+ A + A R P L + + P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGN---P 223
Query: 59 LGEAREIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
LG A +FK AR + + N P +DVV G+ G +G + EA F +L +
Sbjct: 224 LGRAL-LFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPE 282
Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA--TALILSNYPVIL 175
+L IFFA K G PR V KV +LGGGLMG GIA TA + PV +
Sbjct: 283 SAALRSIFFATTEMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTA-TKAGLPVRI 338
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++N + + + L +VK+ + + +K ++L++G DY FK D+VIEA+
Sbjct: 339 KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVF 398
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
E+++LKQQ+ A++E+ C PH I ASNTS++ + I ++++G H+FSP MPL+
Sbjct: 399 EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDL 354
E++ +TS + I + + KK KTPIVV + GF VNR+ PY +AA LL+E G +
Sbjct: 459 EVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPI 517
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQE------ 408
ID A+ KFG P+GP L D VG V + IIPI++
Sbjct: 518 EHIDAALVKFGFPVGPITLLDEVGIDVG-----------------TKIIPILEAALGERF 560
Query: 409 -----------DKRAGETTRKGFYLYDERRKAS---PDPEV 435
D R G +GFYLY ++ K S D V
Sbjct: 561 SAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESV 601
|
Length = 708 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 1e-97
Identities = 161/455 (35%), Positives = 237/455 (52%), Gaps = 34/455 (7%)
Query: 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG- 60
+ K V+ E+A +G VDAVVAP +L A + + W A + K+EPL
Sbjct: 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKA--RRQPKLEPLKL 224
Query: 61 ---EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
EA F A+ ++A + P+ + +EA G L+ EA+ F KL ++
Sbjct: 225 SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTN 284
Query: 117 TCKSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
++LV IF +G +K L + VK+ A+LG G+MG GIA PV
Sbjct: 285 VARALVGIFLNDQYVKGKAK-----KLAKDAKPVKQAAVLGAGIMGGGIAYQSASKGVPV 339
Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
I+K++N+K L+ G+ L +V++GK+ K +S + LDY F+ VD+V+EA
Sbjct: 340 IMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEA 399
Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
++EN +K + A++E+ ILASNTSTI ++L+ + + G HFF+P H MP
Sbjct: 400 VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459
Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
L+E++R +TS + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 460 LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAD 519
Query: 354 LYLIDRAITK-FGMPMGPFRLADLVGFGVAIATG------MQFIENFPERTYKSM--IIP 404
ID+ + K FG PMGP L D+VG I T M E FP+R K I
Sbjct: 520 FRQIDKVMEKQFGWPMGPAYLLDVVG----IDTAHHAQAVMA--EGFPDRMKKDYRDAID 573
Query: 405 IMQEDKRAGETTRKGFYLYDERRKASP----DPEV 435
++ E KR G+ KGFY Y+E +K P DP V
Sbjct: 574 VLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAV 608
|
Length = 715 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 3e-95
Identities = 107/284 (37%), Positives = 168/284 (59%), Gaps = 4/284 (1%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+KKVA++G G+MG+GIA L+ Y V+LK+++ + LE + + NL+ V+KGK+T+E
Sbjct: 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
+ + ++ +T D + KD D+VIEA++E++ LK+Q+FA+LE P ILASNTS++
Sbjct: 63 EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + E +R +G HFF+P +MPL+E++R +TS + + +++ KKI KTP+VV
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384
+ GF VNR+ A L+E G ID A+ G+PMGPF LADL+G V +
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242
Query: 385 TGMQFIENFPERTYKSM--IIPIMQEDKRAGETTRKGFYLYDER 426
E + Y ++ + E R G + KGFY Y
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGE 286
|
Length = 307 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 279 bits (714), Expect = 1e-85
Identities = 147/443 (33%), Positives = 230/443 (51%), Gaps = 18/443 (4%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
+ K + E+A +G VDAVV ++L + A Q D + + W A + K+EPL
Sbjct: 169 SGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSK 226
Query: 61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
EA F A+ + A P+ P+ + +E G L+ EA+ F KL ++
Sbjct: 227 IEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEA 286
Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
K+L+ +F +G +K + VK+ A+LG G+MG GIA P+++
Sbjct: 287 KALIGLFLNDQYVKGKAKK-----ADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIVM 341
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++N+ L+ G+ L +V++G++T K ++ +T L Y F +VD+V+EA++
Sbjct: 342 KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
EN +K + A++E++ ILASNTSTI ++L+ + + G HFF+P H MPL+
Sbjct: 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV 461
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R ++S + I ++ K+ KTPIVV +C GF VNR+ FPY L+ G D
Sbjct: 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFV 521
Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
ID+ + K FG PMGP L D+VG E FP+R K I + E KR
Sbjct: 522 RIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRL 581
Query: 413 GETTRKGFYLYDERRKASPDPEV 435
G+ KGFY Y+ +K P V
Sbjct: 582 GQKNGKGFYAYEADKKGKPKKLV 604
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 3e-82
Identities = 159/444 (35%), Positives = 225/444 (50%), Gaps = 12/444 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP--WVATLYKTDKIEP 58
M+LT K ++ ++A LGLVD VV + L+ TA + AL R+P L + P
Sbjct: 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGT---P 218
Query: 59 LGEAREIFKFARAQ-ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
LG A +F A + A+K N +DVV G+ G + GL EA F +L+ +
Sbjct: 219 LGRAL-LFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPE 277
Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILK 176
+L IFFA K G P ++KKV ILGGGLMG GIA+ + PV +K
Sbjct: 278 SAALRSIFFATTEMKKETGSDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIK 334
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
++N + + + L VK+ MT + + ++L+TG DY FKDVD+VIEA+ E
Sbjct: 335 DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394
Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
+++LK Q+ D+E+ C H I ASNTS++ + I + ++G H+FSP MPL+E
Sbjct: 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454
Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
++ TS Q I + + KK KTPIVV + GF VNR+ PY A L+ G +
Sbjct: 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEH 514
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
ID+A+ KFG P+GP L D VG V ER + + D R G
Sbjct: 515 IDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKN 574
Query: 417 RKGFYLYDERRKASP-DPEVKKFI 439
KGFYLY K D V +
Sbjct: 575 GKGFYLYGAATKKKAVDESVYGLL 598
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-75
Identities = 69/180 (38%), Positives = 115/180 (63%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
KVA++G G MG+GIA + V+L +++E+ LE R+ +L V+KG++T+E
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
+ ++ ++ D D D+VIEA+ EN+ LK+++FA+L+ PP ILASNTS++ +
Sbjct: 61 DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120
Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
+ T +R +G HFF+P +MPL+E+VR +TSP+ + ++ + KKI KTP+VV +
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 2e-74
Identities = 144/454 (31%), Positives = 221/454 (48%), Gaps = 27/454 (5%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL 59
MMLT K ++ + A +G+VD +V P + A + ++ LE A K+
Sbjct: 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSIN 233
Query: 60 GEA-----------------REIFKFARAQARKQAPNL-THPIVCIDVVEAGVVSGPRAG 101
+ ++++K A + KQ L P+ +DVV G GP AG
Sbjct: 234 RDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAG 293
Query: 102 LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG 161
+ E++ F +L + K+L+ +F Q K G R VK +A+LG GLMG+G
Sbjct: 294 YEAESKAFGELSMTFESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAG 349
Query: 162 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221
IA + +LK+ L+ G +V L +VK+ K+T + + +S LT LDY
Sbjct: 350 IAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409
Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIV 281
FK+ DMVIEA+ E++SLK ++ ++E PPHCI+ASNTS + + I + ++++
Sbjct: 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVI 469
Query: 282 GAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYT 341
G H+FSP M LLEI+ + TS + + +G K K IVV + GF R P
Sbjct: 470 GMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPML 529
Query: 342 QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM 401
L++ G D +D+ TKFG P+G LAD VG VA + F ER +
Sbjct: 530 AEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGER-FGGG 588
Query: 402 IIPIMQEDKRAGETTR---KGFYLYDERRKASPD 432
++ E +AG R KG ++Y E +K S
Sbjct: 589 SAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKK 622
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-71
Identities = 103/283 (36%), Positives = 160/283 (56%), Gaps = 9/283 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
++K+ ++G G MG+GIA ++ Y V++ ++++ ++ G+ + +L VKKGKMT+
Sbjct: 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
E ++ +TG D + KD D+VIEA EN+ LK++IFA L++ P ILA+NTS++
Sbjct: 63 DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + T D+++G HFF+P VM L+EI+R TS + + KKI KTP+ V
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
N GF VNR+ P +A F+L E ID + K G P+GP LADL+G +
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGM-KLGCNHPIGPLALADLIGLDTCL 241
Query: 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
A E F + Y+ P++++ AG RK GFY Y
Sbjct: 242 AIMEVLYEGFGDSKYRPC--PLLRKMVAAGWLGRKTGRGFYDY 282
|
Length = 282 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 9e-62
Identities = 96/294 (32%), Positives = 153/294 (52%), Gaps = 15/294 (5%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+KKV ++G G MGSGIA + V L + + L G+ + ++L VKKGKM+QE
Sbjct: 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
+ + T+ + + E +D D +IEAI+E+ LK+++F++L++ C P ILASNTS+I
Sbjct: 64 EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + T +++G HF +P +M L+EI+R TS +V + ++ KT +
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAITKFG--MPMGPFRLADLVGFG 380
+ GF VNR+ P AF + G D ID + K G PMGP LAD +G
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKED---IDTGM-KLGTNHPMGPLHLADFIGLD 239
Query: 381 VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASP 431
++ E + Y+ P++ + AG RK G Y YD +++ P
Sbjct: 240 TCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291
|
Length = 295 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 3e-55
Identities = 98/289 (33%), Positives = 153/289 (52%), Gaps = 19/289 (6%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+++V ++G G MG+GIA + V++ E E+ AG R+ +L+ V +GK+T+
Sbjct: 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASNTSTI 265
+ + ++ L D F D +VIEA++E+ ++K +IFA+L+K P +LASNTS+I
Sbjct: 65 ERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLD-IGKKIKKTPIV 324
+ + T R++G HFF+P V+PL+E+V T TS + + + K +
Sbjct: 125 PIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVR 184
Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITK-FGMPMGPFRLADLVGF 379
+ +GF VN + PY +A +VE G D ID+A+ PMGP RL+DLVG
Sbjct: 185 AQDRSGFVVNALLVPYLLSAIRMVESGFATAED---IDKAMVLGCAHPMGPLRLSDLVGL 241
Query: 380 GV--AIATGMQFIENFPERTYKSMIIPI---MQEDKRAGETTRKGFYLY 423
AIA M E F E Y P+ M E G+ + +GFY Y
Sbjct: 242 DTVKAIADSM--YEEFKEPLYAPP--PLLLRMVEAGLLGKKSGRGFYTY 286
|
Length = 286 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 6e-53
Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 17/291 (5%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV---RANLQSRVKKGKM 203
+K + ++G G+MG GIA + Y V + +V+E+ L+ + + L++ V+KGKM
Sbjct: 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62
Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
++++ + ++ + YES D D ++EA+ E + LK+++FA+LE+ P I+ASNTS
Sbjct: 63 SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
I + I KDR +G H+F+PA VM L+E+VR TS + +++ KKI K PI
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182
Query: 324 VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITK--FGMPMGPFRLADLVGFGV 381
V + GF R + A E G + K FG PMGPF L D++G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDT 242
Query: 382 A--IATGM-------QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
IA + QFI P + K M++ DK+ ++ G++ Y
Sbjct: 243 VYHIAEYLYEETGDPQFI---PPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290
|
Length = 291 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 5e-52
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 7/299 (2%)
Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK 202
A + VA++G G MG+GIA + + V+L + A + A L V+KGK
Sbjct: 3 ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
+T E+ + ++ L V D D+V+EAI+E + +KQ +FA LE P CILA+NT
Sbjct: 63 LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122
Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
S++ + I +R+ G HFF+P +M L+E+V T P V L + + KTP
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182
Query: 323 IVVGNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFG 380
+ + GF VNR P YT+A +L E D ID + + G MGPF L DL+G
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242
Query: 381 VAIATGMQFIEN--FPERTYK-SMIIPIMQEDKRAGETTRKGFYLY-DERRKASPDPEV 435
V A M+ + + E ++ S+I + R G + +GFY Y D ++ +
Sbjct: 243 VNHAV-MESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAP 300
|
Length = 507 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-50
Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 11/329 (3%)
Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ 205
V VA++G G MG+GIA + + V+L ++ + L I + A L S V KGK+T
Sbjct: 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTA 63
Query: 206 EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
E+ E+T+ L V D + D +VIEAI+EN+ +K+ +FA LE+ CP I+ASNTS++
Sbjct: 64 EECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
+ I +R+ G HFF+PA VM L+E+V T+ +V L + K P+
Sbjct: 124 SITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC 183
Query: 326 GNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAI 383
+ GF VNR+ P Y +A L E+ ++D A+ G PMGPF L DL+G V
Sbjct: 184 HSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243
Query: 384 A-TGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY-DERRKASPDPEVKKF 438
A T F + +R + + QE AG RK G Y Y +E P V
Sbjct: 244 AVTCSVFNAFWQDRRFLPS--LVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDS 301
Query: 439 IEKARSMSGV--AIDPKVLQSRQLTLTLR 465
++ G A P + + + +
Sbjct: 302 FSPRVTVVGDIGAAAPLLARLEAAGIKVE 330
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-47
Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 9/286 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
++K+ ++G G+MG GIA +S + L ++ ++ LE+ + + + V +GK+T+
Sbjct: 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60
Query: 207 KFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
+ ++ L+ LD + D D+VIEA+ E + LK+ +F + + P C +A+NTST+
Sbjct: 61 ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120
Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
I T +R++ HFF+P H M L+E++R +TS + + ++ +++ K +VV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180
Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380
GF +R+ AF +++ G D ID+AI PMGP L DLVG
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAED---IDKAIRLGLNFPMGPLELGDLVGLD 237
Query: 381 VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
+ E E+ + ++ + R G T +G Y Y R
Sbjct: 238 TRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283
|
Length = 288 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-47
Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 11/284 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+KKV ++G G MG+GIA L+ Y V+L +V+ LEAG+ + NL +V KGK+++E
Sbjct: 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
++ ++ D E D D+VIEA E+ ++K++IFA L P ILA+NTS+I
Sbjct: 64 ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ + T +R +G HF +P VM L+E++R T + K+ KT V
Sbjct: 124 ITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAE 183
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
+ F VNR+ P +A + L E + ID A+ K G PMGP LAD +G +
Sbjct: 184 DFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAM-KLGANHPMGPLELADFIGLDTCL 242
Query: 384 ATGMQFI-ENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
+ MQ + + + Y+ P++ + AG RK GFY Y
Sbjct: 243 SI-MQVLHDGLADSKYRP--CPLLVKYVEAGWLGRKTGRGFYDY 283
|
Length = 292 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 3e-44
Identities = 101/331 (30%), Positives = 164/331 (49%), Gaps = 39/331 (11%)
Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR--VKKGKM 203
++ +AI+G G MGSGIA V+L +V E LE R R ++ V
Sbjct: 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALE----RARGVIERALGVYAPLG 58
Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
I + G+ + D+VIEA+ E + LK+ +FA L+ C P I A+NTS
Sbjct: 59 IASAGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTS 116
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
+ + I + +R VG HFF+PA V+PL+E+VR ++TSPQ + + + + I K P+
Sbjct: 117 GLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPV 176
Query: 324 VVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITKFGMPM-----GPFRLADL 376
+V + GF NR+ + A L+E+G ID + K+ + + GP D+
Sbjct: 177 LVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVV-KWSLGIRLALTGPLEQRDM 235
Query: 377 VGFGV--AIATGM-QFIENFPERTYKSMIIPIMQEDKRAGE---TTRKGFYLYD-ERRKA 429
G V A+A+ + Q +EN ++ P+++E AGE + +GFY + ERR+
Sbjct: 236 NGLDVHLAVASYLYQDLEN------RTTPSPLLEEKVEAGELGAKSGQGFYAWPPERRE- 288
Query: 430 SPDPEVKKFIEKARSMSGVAIDPKVLQSRQL 460
EV +K+ ++ V L+SR+
Sbjct: 289 ----EVLA--DKSAALVEVR---AWLESREP 310
|
Length = 311 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 9e-38
Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 15/288 (5%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
+K V + G G++GS IA + V + +++++ LE R+ V+ + T+E
Sbjct: 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62
Query: 207 KF-EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
E ++ +T D E+ KD D+VIEA+ E+ +K + +L K P I A+N+ST
Sbjct: 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
+ + E T ++ + HF + EI+ T P+V ++ K I PIV
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182
Query: 325 VGN-CTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITK-FGMPMGPFRLADLVGFGV 381
+ G+ +N + P+ AA L +G D ID+ G PMGPF + D+VG
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG--- 239
Query: 382 AIATGMQFIENFPERTYKSMIIPI------MQEDKRAGETTRKGFYLY 423
+ T N+ E T + + G T +GFY Y
Sbjct: 240 -LDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNY 286
|
Length = 287 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 1e-22
Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 40/297 (13%)
Query: 158 MGSGIATALILSNYPVILKEVN-------EKFLEAGIGRVRANLQSRVKKGKMTQEKFEK 210
MG GIA A + + V L + + L + V G++ + +
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60
Query: 211 T---ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
I+++ ++ D D+V EA+ E + K++ L ++ I+AS TST +
Sbjct: 61 VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327
+ +R + AH+ +PA++MPL+E+ ++ T P V+ L + ++I K P+V G
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180
Query: 328 CTGFAVNRMFFPYTQA-----AFLLVERG-TDLYLIDRAI-TKFGMPMGPFRLADLVGFG 380
G+ V R+ QA A +VE G ID+AI T FG+ L + + +G
Sbjct: 181 SPGYIVPRI-----QALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWG 235
Query: 381 -----------VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
+A G P+R I+ E+ R G T GFY Y
Sbjct: 236 GCDILYYASRYLAGEIG-------PDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285
|
Length = 314 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-21
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITK-FGMPMGPFRLADLVGFGVAIATGM 387
GF VNR+ P A LVE G ID A+ G+PMGPF L+DLVG V
Sbjct: 1 GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60
Query: 388 QFIENFPERTYK-SMIIPIMQEDKRAGETTRKGFYLY 423
E F +R Y+ S ++ + E R G T KGFY Y
Sbjct: 61 VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
VAI+G GL+G A + + V L + + A + L+ + E
Sbjct: 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAP 63
Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
+ ++ + ++ D D V E+ EN+ LK+ +FA+L+ PPH ILAS+TS +
Sbjct: 64 DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG- 326
+ E ++R + AH +P +++P++E+V T+P + + + ++P+ +
Sbjct: 124 SAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRR 183
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITKFGMP-----MGPFRLADL 376
GF +NR+ + AF LV G D ID I + G+ MGPF DL
Sbjct: 184 EIDGFVLNRLQGALLREAFRLVADGVASVDD---IDAVI-RDGLGLRWSFMGPFETIDL 238
|
Length = 308 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG--IGRVRANLQSRVKKGKMT 204
+ K A +GGG++G G A +L+ V V + EA IG V AN + +T
Sbjct: 4 IMKAACIGGGVIGGGWAARFLLAGIDV---AVFDPHPEAERIIGEVLAN--AERAYAMLT 58
Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
L E+ D + E++ E + LK+++ A+++ P ++ S+TS
Sbjct: 59 DAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSG 118
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
+ + E +R+ AH ++P +++PL+E+V +TSP+ I +I ++I P+
Sbjct: 119 FLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVH 178
Query: 325 VG 326
+
Sbjct: 179 IA 180
|
Length = 495 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKM 203
+K A +G G++GSG + V+ E L A + L+ +
Sbjct: 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66
Query: 204 TQEK--FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261
+ + F TI D D + E+ E +LK ++ + + P I+AS+
Sbjct: 67 SPARLRFVATIE--------ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118
Query: 262 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321
TS + R +R V H F+P +++PL+E++ +T+P+ + + I + +
Sbjct: 119 TSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMR 178
Query: 322 PI-VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY-LIDRAITKFGMP-----MGPFRLA 374
P+ V GF +R+ + A LV G ID AI +FG MG F
Sbjct: 179 PLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI-RFGAGIRWSFMGTFLTY 237
Query: 375 DLVG 378
L G
Sbjct: 238 TLAG 241
|
Length = 321 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++LT + + EEA LGLVD VV +L++ A + A +
Sbjct: 157 LLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
M+LT + V E LG V+ VV +L++ A +WA DIL
Sbjct: 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILA 198
|
Length = 259 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILE 41
++LT +P+ EA LGLVD VV +L+ A + A +
Sbjct: 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA 203
|
Length = 257 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
MMLTS+P+ G EA GLV+ V L+ A++ A I L +T K
Sbjct: 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS 217
Query: 58 PLGEA--REIFKFARA 71
E RE F
Sbjct: 218 SYYEGVKREAKIFGEV 233
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LT + ++ +EA +GLVD VV QLV A + A + + +A L +
Sbjct: 154 MLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAAL-----KAAMR 208
Query: 61 EA-REIFKFARAQARKQAPNLTHPIVCIDVVEA 92
A + RAQA + P P DV E
Sbjct: 209 AALEDALPEVRAQALRLYPA---PFSTDDVKEG 238
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 9e-04
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
M+L +P+ EEA +GLV+ VV +L + A A +
Sbjct: 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPAS 204
|
Length = 259 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++LT +PV +EA ++GL + VV Q + A + A ++
Sbjct: 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAEL 195
|
Length = 254 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 3 LTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----P 58
LT+ P+ E A GLV+ VV ++L+ AR+ A I+++ + V YK+ +
Sbjct: 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMV-LRYKSVINDGLKLD 223
Query: 59 LGEAREIFK 67
LG A ++ K
Sbjct: 224 LGHALQLEK 232
|
Length = 265 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 100.0 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 100.0 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 100.0 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.96 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.94 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.91 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.76 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.73 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.7 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.7 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.64 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.63 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.6 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.56 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.55 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.54 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.54 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.53 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.52 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.51 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.51 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.5 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.49 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.48 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.46 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.46 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.45 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.44 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.43 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.42 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.41 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.4 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.4 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.39 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.38 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.37 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.36 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.36 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.36 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.35 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.34 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.33 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.31 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.31 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.31 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.3 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.3 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.3 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.28 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.26 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 99.25 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.24 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.23 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.22 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 99.22 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 99.22 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.21 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.21 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 99.2 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.2 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 99.2 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 99.2 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 99.2 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 99.19 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 99.19 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 99.19 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.19 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.18 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.18 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 99.17 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 99.17 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 99.17 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 99.16 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.15 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 99.15 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 99.15 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.15 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 99.15 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 99.15 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.15 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 99.15 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 99.14 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.14 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 99.14 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 99.14 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 99.14 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 99.14 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 99.14 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 99.13 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 99.12 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.12 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 99.12 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 99.12 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.11 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.1 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 99.1 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 99.1 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 99.09 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 99.09 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 99.08 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 99.07 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 99.07 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 99.06 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.06 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 99.06 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.06 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 99.06 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 99.05 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 99.02 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.02 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.02 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 99.02 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.01 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 99.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 99.0 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.98 | |
| PLN02921 | 327 | naphthoate synthase | 98.98 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.97 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.96 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 98.96 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 98.95 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 98.93 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.93 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 98.92 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.92 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.91 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 98.91 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.91 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 98.91 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 98.9 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 98.89 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.88 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 98.88 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 98.85 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 98.84 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 98.83 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 98.81 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.81 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 98.8 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.78 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 98.78 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 98.78 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.77 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.77 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.75 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.74 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 98.73 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.71 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.7 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.7 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 98.69 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 98.67 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.67 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 98.66 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 98.64 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.62 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.62 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.53 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.52 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.46 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.42 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 98.39 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 98.39 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.39 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 98.37 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.37 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.32 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 98.31 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.31 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.3 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.29 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.29 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 98.29 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.28 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.27 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.24 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.22 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.21 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.2 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.18 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.16 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.16 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.15 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.15 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.15 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.14 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 98.14 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.13 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.13 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.12 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.11 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.11 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.07 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.07 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.07 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.03 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 98.02 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.0 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.98 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.97 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.97 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.96 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.95 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.92 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.92 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.89 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.88 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.87 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.87 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.87 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.86 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 97.81 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.8 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.8 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.79 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.77 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.77 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.77 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.75 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.74 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.71 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.7 | |
| PLN00106 | 323 | malate dehydrogenase | 97.69 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.67 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 97.64 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.64 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.61 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.59 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.59 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.58 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.57 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.57 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.53 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.53 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.52 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 97.52 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.51 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 97.49 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.49 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.48 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 97.45 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.44 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.42 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.42 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.41 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.41 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.41 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.35 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.35 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.34 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 97.34 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.32 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.31 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.31 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.31 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.29 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.28 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.28 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.27 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.24 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.24 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.2 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.18 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.14 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.13 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.09 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.04 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 97.04 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.02 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.01 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.97 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.96 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.96 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.96 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 96.92 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.9 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.89 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 96.88 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.88 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.87 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 96.87 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.86 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.84 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.82 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.78 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.77 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.77 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.76 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.71 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.69 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.65 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.63 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.63 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.62 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.61 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.55 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.53 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 96.53 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.52 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.52 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.52 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 96.49 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.48 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.47 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.47 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.46 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.43 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.31 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.31 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.27 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.26 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.24 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.21 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 96.21 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.2 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.2 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.18 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.18 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.17 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.17 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.13 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.12 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.12 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.08 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.07 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.05 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.04 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.03 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.01 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.01 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.95 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.9 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.87 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.83 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.82 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.8 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.77 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.77 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.76 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.72 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.72 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.66 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.65 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.59 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.55 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.46 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.44 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.37 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 95.31 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.29 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 95.26 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.26 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 95.21 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.21 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.18 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.15 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.13 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.12 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.1 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.09 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.08 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.08 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.05 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.03 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.02 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.02 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.02 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.01 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.93 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.91 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.87 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.84 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.84 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.76 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.75 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.69 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.63 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.54 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.52 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.48 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.47 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.47 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.45 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.4 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.37 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.37 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.36 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.34 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.3 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.28 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 94.16 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.15 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.1 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.07 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.06 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.0 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.95 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 93.95 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.92 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.91 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 93.88 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 93.84 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.83 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 93.83 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.82 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.82 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 93.81 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.81 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.71 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.65 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.64 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 93.64 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.56 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.56 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 93.55 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.47 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 93.45 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.45 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.41 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 93.39 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 93.39 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.3 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 93.28 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 93.26 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.24 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 93.24 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.24 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 93.22 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.21 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.17 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.06 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 93.05 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.03 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 93.02 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 92.94 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 92.93 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 92.89 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 92.87 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 92.74 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 92.72 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 92.69 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 92.62 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 92.58 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 92.57 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 92.49 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.45 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 92.4 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 92.38 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 92.31 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 92.26 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 92.23 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 92.2 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 92.2 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.17 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.15 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 92.15 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.08 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 92.06 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.01 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.01 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 92.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 91.97 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 91.9 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 91.87 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.83 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 91.83 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 91.82 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 91.81 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 91.78 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.77 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.77 |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-98 Score=823.50 Aligned_cols=502 Identities=28% Similarity=0.418 Sum_probs=449.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-------------chHHHHHHHHHHhhhccCCCcchhhcccCCCC-----CchHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIE-----PLGEA 62 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~-----~~~~~ 62 (521)
|++||++++|+||+++||||+|||+ +++++.|.+|++.++..+.+..+.....++.. .....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5799999999999999999999987 55888999999887654212211111111110 00123
Q ss_pred HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCC
Q 009963 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (521)
Q Consensus 63 ~~~~~~a~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~ 141 (521)
...+..+++++.+++++ ||||.+++++|+.+...+++++++.|+++|.+|+.|+++++++|+||.++.+++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 45678888999888775 9999999999999999999999999999999999999999999999999999886431
Q ss_pred CCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 142 ~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
+++++||+|||||||++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~ 381 (521)
.|++++++.+.++++.+||+||+++|+||||+||++.+|++||++|+++|++|++||.++++||||||||+++|++|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhhHHHhhCCCCCc--cccHHHHHHHCCCCCccCCceeeeccCCC--CCCCChHHHHHHHHHhhccCccCChhhhhh
Q 009963 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKVLQS 457 (521)
Q Consensus 382 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (521)
++++++.+++.+++++. |++++++|+++|++|+|||+|||+|++++ ++..++++.+++...+. .|. .
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~----~- 640 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK----A- 640 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc----c-
Confidence 99999999998887653 57899999999999999999999998654 47789999888765432 111 0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 458 RQLTLTLRLLWAWVFHLTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 458 ~~~~~~~~~i~~rll~~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
...+.++|++|++++|+|||++||++|+ +++.||| .+|.+|.|||+ |||.|+|.+|-+
T Consensus 641 --~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID--~a~~~G~GfP~~~gGP~~~aD~~Gld 702 (737)
T TIGR02441 641 --EVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGD--IGAVFGLGFPPFLGGPFRFVDLYGAD 702 (737)
T ss_pred --ccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 0256889999999999999999999999 8999999 99999999997 999999999854
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-96 Score=809.44 Aligned_cols=502 Identities=29% Similarity=0.465 Sum_probs=445.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCC-C-CCchHHHHHHHHHHHHHHH-hC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDK-I-EPLGEAREIFKFARAQARK-QA 77 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~-~-~~~~~~~~~~~~a~~~~~~-~~ 77 (521)
|++||++++|++|+++||||+++|++++.+.|.++++++.....++.+....... . .+.......+..+++++.+ +.
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAG 245 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999998866532222221110000 0 0111112235556664444 45
Q ss_pred CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
++||||..++++++.+...+++++++.|+++|.+|+.|+++++++++||.+|++++.+.. .+..+++|++|+|||+|+
T Consensus 246 ~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGaG~ 323 (714)
T TIGR02437 246 PHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGAGI 323 (714)
T ss_pred CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECCch
Confidence 689999999999999999999999999999999999999999999999999999886422 123567899999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|++++++.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||+++.|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 404 PKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
+||+||+++|+||||+||++.+|++||++|+++|++|++||++|+ +||||||||+++|++|||+++++++.++..++++
T Consensus 484 lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~ 563 (714)
T TIGR02437 484 MGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDR 563 (714)
T ss_pred cCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999998 7999999999999999999999999999888775
Q ss_pred Cc--cccHHHHHHHCCCCCccCCceeeeccCC----CCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHH
Q 009963 397 TY--KSMIIPIMQEDKRAGETTRKGFYLYDER----RKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAW 470 (521)
Q Consensus 397 ~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 470 (521)
+. +++++++|+++|++|+|||+|||+|+++ .++..|+++..++...+. ++ +.++.+||++|
T Consensus 564 ~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~i~~R 630 (714)
T TIGR02437 564 MGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----EQ--------RDFDDEEIIAR 630 (714)
T ss_pred cccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----cc--------CCCCHHHHHHH
Confidence 42 4589999999999999999999999633 245688998887754432 01 13788999999
Q ss_pred HHHHHHHHHHHHhhcc-ccCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 471 VFHLTGEESCSGLTLL-DRSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 471 ll~~~vnea~~~l~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
++++|+|||++||++| ++++.||| .++.+|.|||. |||+++|.+|-+
T Consensus 631 ll~~~~nEa~~ll~eGiva~~~dID--~~~~~G~Gfp~~~gGP~~~~D~~Gl~ 681 (714)
T TIGR02437 631 MMIPMINETVRCLEEGIVATAAEAD--MGLVYGLGFPPFRGGAFRYLDSIGVA 681 (714)
T ss_pred HHHHHHHHHHHHHhCCCcCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 9999999999999998 89999999 89999999998 999999999854
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-93 Score=786.38 Aligned_cols=502 Identities=31% Similarity=0.483 Sum_probs=445.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhccc-CCC-CCchHHHHHHHHHHHHHHH-hC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARK-QA 77 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~a~~~~~~-~~ 77 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+.+|.+..... .+. .+......+++.+++.+.+ +.
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~ 245 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAG 245 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999987532332221100 000 0001122345566655544 45
Q ss_pred CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
++||++..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|..++.+... ...+++|+||+|||+|+
T Consensus 246 ~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGaG~ 323 (715)
T PRK11730 246 KHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGAGI 323 (715)
T ss_pred cCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECCch
Confidence 6899999999999999888999999999999999999999999999999999998765321 12456799999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||..++.+|++|+++|++++.++++.+++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVEN 403 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++.|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~ 483 (715)
T PRK11730 404 PKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK 483 (715)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
+||+||+++|+||||+||++.++++||++++++|++++|||.+|+ ++|||||||+++|.+|||+++++.+.++..++++
T Consensus 484 lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~ 563 (715)
T PRK11730 484 MGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDR 563 (715)
T ss_pred hCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999 7999999999999999999999999999888875
Q ss_pred Cc--cccHHHHHHHCCCCCccCCceeeeccCCC----CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHH
Q 009963 397 TY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAW 470 (521)
Q Consensus 397 ~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 470 (521)
.. +++++++|+++|++|+|||+|||+|+++. +...|+.+.+++...+. .+ +.++.+||.+|
T Consensus 564 ~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~i~nR 630 (715)
T PRK11730 564 MKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----PK---------REFSDEEIIAR 630 (715)
T ss_pred cccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----cc---------CCCCHHHHHHH
Confidence 32 46899999999999999999999996431 35578888777765321 00 23788999999
Q ss_pred HHHHHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 471 VFHLTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 471 ll~~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
++.+++|||++||++|+ +++.||| .+|.+|.|||+ |||+++|.+|-+
T Consensus 631 ll~~~~~Ea~~ll~eGvva~~~dID--~a~~~g~G~p~~~gGPf~~~D~~Gld 681 (715)
T PRK11730 631 MMIPMINEVVRCLEEGIVASPAEAD--MALVYGLGFPPFRGGAFRYLDTLGVA 681 (715)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHH--HHHHhCCCCCCCcCCHHHHHHHhCHH
Confidence 99999999999999996 9999999 89999999987 999999999854
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-92 Score=781.68 Aligned_cols=495 Identities=33% Similarity=0.500 Sum_probs=442.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC--CCchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||++++|++|+++||||+|||+++++++|.+||++. . +.++........ .++......+..+.+++.++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111100000000 0111223345566777777655
Q ss_pred -CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
+||||.++|++++++...+++++++.|++.|..++.|+++++++++|+.+++.++.++. . ..+++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 79999999999999999999999999999999999999999999999999998876552 1 2346799999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.||+||||+++.|++++++.+.++++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 317 ~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.+||+||+++|+|||++||++.++++||++++++|++++|||.+|+++|||||||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCC-CCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLT 475 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~ 475 (521)
+.+++++++|+++|++|+|||+|||+|+++ +++..|+.+..++.. .+. .+++..+|.+|++.++
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~g~v~~Rll~~~ 619 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KPG--------VDKEASAVAERCVMLM 619 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CCC--------CCCCHHHHHHHHHHHH
Confidence 888899999999999999999999999854 356778888766521 111 1367899999999999
Q ss_pred HHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 476 GEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 476 vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
+|||++||++|+ ++++||| .++.+|.|||. |||+++|.+|-+
T Consensus 620 ~~Ea~~ll~eGvva~~~dID--~~~~~g~G~p~~~~Gpf~~~D~~Gld 665 (699)
T TIGR02440 620 LNEAVRCLDEGVIRSPRDGD--IGAIFGIGFPPFLGGPFRYIDTLGAD 665 (699)
T ss_pred HHHHHHHHHCCCcCCHHHHH--HHHHhcCCCCCCcCCHHHHHHHhCHH
Confidence 999999999997 9999999 99999999996 999999999854
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-92 Score=781.29 Aligned_cols=495 Identities=32% Similarity=0.484 Sum_probs=444.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCC--CchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||++++|+||+++||||+|||+++++++|.+||+++.... ++........ ++......+..+++++.++.+
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR----RPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc----CcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999998842110 0000000000 111223467778888888766
Q ss_pred -CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
+|||+..+|++++.+...++++++..|++.|..++.|+++++++++|+.++..++.+.. . ..+++++||+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 79999999999999999999999999999999999999999999999999998876553 1 2356899999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||++||..++ .+|++|+++|++++.++++..++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
++++|+++|++++++++|++||+||||++++++|++.+.+|+||+|+|||||++.||+||||++++|++++++.+.++++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 317 ~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.+||.|++++|+||||+||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|+++++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCCC---CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFH 473 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~ 473 (521)
+.+++++++|+++|++|+|||+|||+|++++ ++..++++...+.. .+. ++++..+|.+|++.
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~g~i~~Rll~ 624 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TPQ--------SRLSANEIAERCVM 624 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CCC--------CCCCHHHHHHHHHH
Confidence 7788999999999999999999999997532 35677877665521 111 13789999999999
Q ss_pred HHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 474 LTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 474 ~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
+|+|||++||++|+ ++++||| .+|.+|.|||+ |||+++|.+|-+
T Consensus 625 ~~~nEa~~ll~eGvva~~~dID--~~~~~G~G~p~~~gGp~~~~D~~Gld 672 (708)
T PRK11154 625 LMLNEAVRCLDEGIIRSARDGD--IGAVFGIGFPPFLGGPFRYMDSLGAG 672 (708)
T ss_pred HHHHHHHHHHHCCCcCCHHHHH--HHHHhcCCCCCccCCHHHHHHHhCHH
Confidence 99999999999997 9999999 99999999998 999999999854
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=612.76 Aligned_cols=369 Identities=30% Similarity=0.456 Sum_probs=325.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||||++++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.|+|+||++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. +|++||.+|+ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HHhhHHHhhC-CCC-CccccHHHHHHHCCCCCccCCceeeeccCCCCC-CC-----------------------------
Q 009963 384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------- 431 (521)
Q Consensus 384 ~~~~~~~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~-~~----------------------------- 431 (521)
++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+++++. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 554 446788999999999999999999999864321 11
Q ss_pred ----------------------------------------ChHHHHHHHHHhhccCc--cCCh-----------------
Q 009963 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (521)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (521)
|+.+..++...+....+ .+.+
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 12222222222211111 1110
Q ss_pred -hhhhhhccCCCHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 453 -KVLQSRQLTLTLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 453 -~~~~~~~~~~~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
+.+. .. .-+...|++|++.+++|||++++++|+++++||| .+|.+|.|||+|||+|+|.+|-
T Consensus 404 Gk~pi-~v-~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID--~a~~~g~G~P~GP~~~~D~~Gl 466 (503)
T TIGR02279 404 GKKVL-QI-ADYPGLLILRTVAMLANEAADAVLQGVASAQDID--TAMRLGVNYPYGPLAWAAQLGW 466 (503)
T ss_pred CCeEE-Ee-CCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCcCHHHHHHHhCH
Confidence 0000 00 0112579999999999999999999999999999 9988999999999999999984
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=599.87 Aligned_cols=373 Identities=29% Similarity=0.434 Sum_probs=326.0
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+++++|+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|++++++.+..+++++++++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+|||||||++++|+.+|++++..+++++|++|||||+++++++..+.+|+|++|+|||+|++.|+|+||++++.|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHH
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~ 382 (521)
+++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||++++ ++|||||||+++|++|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 79999999999999999999
Q ss_pred HHHhhHHHhhC-CC-CCccccHHHHHHHCCCCCccCCceeeeccCCCC-CCCChH--------------------HHHHH
Q 009963 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKFI 439 (521)
Q Consensus 383 ~~~~~~~~~~~-~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~-~~~~~~--------------------~~~~~ 439 (521)
+++.+.+++.+ ++ ++.+++++++|+++|++|+|||+|||+|+++++ +.++++ +.+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 34 455778999999999999999999999975432 222222 22222
Q ss_pred HHH----------------------------hhccCccCChh-------hh-hhhccC----------------------
Q 009963 440 EKA----------------------------RSMSGVAIDPK-------VL-QSRQLT---------------------- 461 (521)
Q Consensus 440 ~~~----------------------------~~~~~~~~~~~-------~~-~~~~~~---------------------- 461 (521)
... +......|..- +. ..+-..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 100 00000000000 00 000000
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 462 --------LTLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 462 --------~~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
-+...|.+|++.+++|||++|+++|+++++||| .+|..|.|||+|||+|+|.+|-.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGvas~~dID--~a~~~g~G~p~GP~~~~D~~Gld 468 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIASPADID--LAMRLGLNYPLGPLAWGDRLGAA 468 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCcCHHHHHHHhCHH
Confidence 046689999999999999999999999999999 99899999999999999999843
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=550.99 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=270.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.|+||+|||+|+||++||..++.+|++|+++|++++.++++...+.+.+++++++|++++++.+..++++++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||||++++|+++|++++++++|++||+||||++|++++++.+.+|+||+|+|||||++.|+||||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++++.++.+.+||+|++++|+||||+||++.++++||++++.+|+ +|++||.+|+ ++|||||||+++|++|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 9999999999 899999999999999999999
Q ss_pred HHhhHHHhhCCCC-Cc-cccHHHHHHHCCCCCccCCceeeeccC
Q 009963 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~-~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
++++.+++.++++ ++ +++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888733 33 678999999999999999999999975
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=502.12 Aligned_cols=281 Identities=36% Similarity=0.566 Sum_probs=266.9
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----Hhhhcccccc
Q 009963 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF-----EKTISLLTGV 218 (521)
Q Consensus 144 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~ 218 (521)
..+++.|+|||+|.||++||+..+.+|++|+++|.|++++.++.+.|.+.+.+..+++..+.... +..+++|+.+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999999999998887665443 6678999999
Q ss_pred cCcc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEE
Q 009963 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297 (521)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lvei 297 (521)
++.+ .++++|+||||+.|++++|+++|++|+..+++++|++||||++.+++++..+++|.||.|+|||||+++|+|||+
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEV 167 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEV 167 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhh
Confidence 9875 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhh
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLAD 375 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D 375 (521)
+.++.|+++++..+..+.+.+||++|.++|.||||+||++.||++||+++++.|. +-+|||.+|+ |.|+||||||++|
T Consensus 168 ir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~D 247 (298)
T KOG2304|consen 168 IRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELAD 247 (298)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 9999999999 9999999999999
Q ss_pred hcCchHHHHHhhHHHhhCCCC--CccccHHHHHHHCCCCCccCCceeeecc
Q 009963 376 LVGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 376 ~~Gld~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~G~~G~k~g~GfY~y~ 424 (521)
.+|||++..+++.|++.+++. +.|+|+++++|++|++|+|+|.|||+|.
T Consensus 248 yvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 248 YVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred HhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 999999999999999999763 4589999999999999999999999994
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=504.50 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=269.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.+++++++|.+++.+.+..+++++.++++++++
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 83 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA 83 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhC-CCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
+||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchH
Q 009963 305 PQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (521)
Q Consensus 305 ~e~~~~~~~l~~-~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~ 381 (521)
+++++.+.+++. .+||+|++++|.|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|+
T Consensus 164 ~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~ 243 (286)
T PRK07819 164 EATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDT 243 (286)
T ss_pred HHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHH
Confidence 999999999988 599999999999999999999999999999999997 9999999998 8999999999999999999
Q ss_pred HHHHhhHHHhhCCCCC-ccccHHHHHHHCCCCCccCCceeeec
Q 009963 382 AIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (521)
Q Consensus 382 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~G~~G~k~g~GfY~y 423 (521)
+.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 244 ~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 244 VKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999998744 58899999999999999999999998
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-60 Score=473.58 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=264.4
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (521)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++...+.+.++.++ .+....+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36899999999999999999999999999999999999999999989889888888888776 666778998888886 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld 380 (521)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|+|||.+|+ ++|||||||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHhhHHHhhCCCCCc--cccHHHHHHHCCCCCccCCceeeecc
Q 009963 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GfY~y~ 424 (521)
++.++++.+++.++++++ +++++++|+++|++|+|||+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=470.42 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=268.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...++..++.|.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999998888888888889999988888888899888888 4689
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+||+|||++.++|+.+|+++.+.+++++|++|||||++++++++.+.+|.|++|+|||+|++.++|+|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.|++++|+|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCCCccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
++.+.+++.+++++.|++++.+|+++|++|+|||+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999898887888999999999999999999999998654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=465.07 Aligned_cols=277 Identities=35% Similarity=0.610 Sum_probs=267.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++||+|||+|.||.+||..++++|++|+++|++++.++++.+++.+.++...+.|.++..+......+++.+++++.+++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999998888888889988888888999
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e 306 (521)
||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHH
Q 009963 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384 (521)
Q Consensus 307 ~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~ 384 (521)
+++.+.++++.+|+.|++++|+|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|++.+
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 9999999999 9999999999999999999999
Q ss_pred HhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeec
Q 009963 385 TGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (521)
Q Consensus 385 ~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y 423 (521)
+++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999874 457889999999999999999999998
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-59 Score=465.78 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=263.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+ .++..++.|.+++.+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988887766 366778889888888888888998888887
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~ 302 (521)
.+++||+||||+|++.++|+.+|+++++.+++++|++||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 009963 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld 380 (521)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||||||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHhhHHHhhCCCCC-ccccHHHHHHHCCCCCccC-----Cceeeec
Q 009963 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (521)
Q Consensus 381 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~G~~G~k~-----g~GfY~y 423 (521)
++.++++.+++.+++++ .|++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998755 4778999999999999999 9999998
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=463.09 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=269.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++++.++++++.|.++.++.+..++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.+++++|.+||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
++++.+++.++++ +.|++++++|+++|++|+|||+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999998874 4578899999999999999999999997654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=460.89 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=267.9
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.++..++.|.++..+.+..+.+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999889899998888888888999888888899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+||+||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeeccCC
Q 009963 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~ 426 (521)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999988874 457789999999999999999999999653
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=456.59 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=255.4
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c-ccccCC
Q 009963 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 227 (521)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.+++++.+..+++|+++++ . +.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477899999999999999999999999999999998764 2 568999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~ 307 (521)
|+|||||||++++|+.+|+++++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.||+|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcCchHH
Q 009963 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (521)
Q Consensus 308 ~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~Gld~~ 382 (521)
++.+.++++.+||.|++++|.+||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999986 9999999999 99999 699999999999999
Q ss_pred HHHhhHHHhhCCC-CCccccHHHHHHHCCCCCccCCceeeeccC
Q 009963 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 383 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
.++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998887 556889999999999999999999999964
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=451.74 Aligned_cols=277 Identities=22% Similarity=0.294 Sum_probs=247.5
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.+++||+|||+|+||++||.+|+.+|++|++||++++.++++..++.+.++.+.+.| ++.. ...++++.++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 458899999999999999999999999999999999999999999999998888877 4432 344688888888 45
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+||||||+++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv-~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~ 377 (521)
++++++.+.+|++.+||+||++ +|.||||+|||+.++++||++++++|+ |++|||.+|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99997 9999999999
Q ss_pred CchH-HHHHhhHHHhhCCCC---CccccHHHHHHH------CCCCCccCCceeeeccC
Q 009963 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (521)
Q Consensus 378 Gld~-~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~G~~G~k~g~GfY~y~~ 425 (521)
|+|. ..+.++++.+.+.+. +..+++...|++ ++.+|.++..+||.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 344445554443221 223456667776 68999999999999965
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=444.12 Aligned_cols=344 Identities=36% Similarity=0.506 Sum_probs=311.6
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||.++..+|++|++.|.|...++.+..++...+.+.+++++++..+.+....++..+.|+..+++||+|||+|+||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|.+|++++++++|++||||++++..+++.+.+|++++|+|||+|++.|+|+||+.+..||..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~-G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.||.|++|++|+||.+||++.+|++++.+++.+ |++|.+||.....|||||||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999887 9999999999999999999999999999999888877766555543
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCCCCCCCCh-HHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLT 475 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~ 475 (521)
+.++|++.|+.|+|||+|||.|+++.++..++ +..+.+.+.. +.+++ +..+++|+++|+++++
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~-----r~~~~ed~v~~~~~p~ 304 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNP-----RVADDEDFVEFLLSPF 304 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCc-----ccCCHHHHHHHHhhHH
Confidence 68899999999999999999999875444444 4444444332 11111 2378999999999999
Q ss_pred HHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 476 GEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 476 vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
||||++|++|++ +++.++| .+-.+|.|||. ||+.|.|..|.+
T Consensus 305 VnEal~~l~EGi~~~~~~~D--i~~v~G~gfp~~~GGp~~~~d~~G~~ 350 (380)
T KOG1683|consen 305 VNEALRCLLEGLKASPSDGD--IASVFGLGFPPFRGGPMRFVDLYGAD 350 (380)
T ss_pred HHHHHHHHHHHHhcCccccc--eeeeeccCCCCcCCCceeeeeccChH
Confidence 999999999977 7788999 66678999988 999999887754
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=398.23 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=247.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+.+......+. ......+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 578999999999999999999999999999999999988877665544333222211 012234566666775 48
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+||+|||++.++|+.+++++.+.+++++|++|+||+++++++++.+.++.+++|+||++|++.++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~G 378 (521)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. +|++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999985 9999999998 99999 79999999999
Q ss_pred chHHHHHhhHHHhhCCCCCccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 379 ld~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
+|++.+++..+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887788999999999999999999999997643
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=344.45 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=244.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+|++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++.+.+.|.++..+....+.++..+++++ .+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999998888888888888888885 57
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+||+|+|++.++|+.+|+++.+.+++++|++||||+++++++++.+.++.++++.|||+|++.++++|++++..|+
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~ 160 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA 160 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc-
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV- 377 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~- 377 (521)
+++++.+.++++.+|+++++++ +.+||++||++.++++||+.++++|. |+++||.+++ ++|++ +|||++.|..
T Consensus 161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~ 240 (308)
T PRK06129 161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA 240 (308)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence 9999999999999999999996 78999999999999999999999885 9999999999 89998 8999999987
Q ss_pred --CchHHHHHhhHHHhhCCCCC-ccccHHHHHHH
Q 009963 378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (521)
Q Consensus 378 --Gld~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 408 (521)
|++........++..+++.. .|+|++++|++
T Consensus 241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred cccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999998888888887754 47788888887
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=313.00 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=162.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||++||..++.+|++|++||++++.++.+.+++.+.++..+++|.+++++.+..+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHH
Q 009963 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~ 308 (521)
+||||+||++++|+++|++|++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.+|++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 009963 309 VDLLDIGKKIKKTPIVVGNC 328 (521)
Q Consensus 309 ~~~~~l~~~lGk~~vvv~d~ 328 (521)
+.+.++++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=333.90 Aligned_cols=242 Identities=23% Similarity=0.323 Sum_probs=204.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....++++++++++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence 3679999999999999999999999999999999998876443222211111 1111111 11224566777774 68
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+|||||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.++++.|||||++.++|+|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~G 378 (521)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.|+++|. |+++||++++ ++|++ ||||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999996 89999999999999999999999875 9999999999 77764 89999999999
Q ss_pred chH-HHHHhhHHHh
Q 009963 379 FGV-AIATGMQFIE 391 (521)
Q Consensus 379 ld~-~~~~~~~~~~ 391 (521)
++. +.+.++++..
T Consensus 239 ~~~g~~~~~~~~~~ 252 (495)
T PRK07531 239 GEAGMRHFLAQFGP 252 (495)
T ss_pred cHHHHHHHHHHhch
Confidence 654 4445555443
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=266.92 Aligned_cols=230 Identities=27% Similarity=0.454 Sum_probs=212.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
..||+|+|.|..|+++|..|+..||+|.+||+.+++++.+.+.+++.+.++-+. |.++. +..+..|+.+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 579999999999999999999999999999999999999999999988877664 55664 45678899999985
Q ss_pred -cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
.++++=.|-|||||++++|+++|+++++.+.|.+|++|+||++.++...+.+.+.++++-.||.||+...||+|+||.+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhh
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD 375 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D 375 (521)
-|+++++++..++.+.+|..||... +.-||.+||+..+++||..+++..|+ +..|+|.+|. |+|+. .||+|.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 9999999999999999999999886 68899999999999999999999998 9999999999 99976 49999887
Q ss_pred hcCc
Q 009963 376 LVGF 379 (521)
Q Consensus 376 ~~Gl 379 (521)
+.--
T Consensus 240 LNA~ 243 (313)
T KOG2305|consen 240 LNAE 243 (313)
T ss_pred cCcH
Confidence 6543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=269.34 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=153.2
Q ss_pred hCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 251 ~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.+.+++++++.+++.+.+..+....+|+|++|+|||+|++.|+++||+++..|++++++.+.++++.+||.|++++|++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45678888888888777787777778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCC-CCccccHHHHHH
Q 009963 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (521)
Q Consensus 331 fi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 407 (521)
||+||++.+++|||++++++|+ +|+|||.+|+ ++|||+|||+|+|.+|+|.++++++.+++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 556889999999
Q ss_pred HCCCCCccCCceeee
Q 009963 408 EDKRAGETTRKGFYL 422 (521)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (521)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 985 66765
|
|
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=195.08 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.4
Q ss_pred cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCCc-cccHHHHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~-~~~~l~~~ 406 (521)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 799999999999999999999999999999998844 68999999
Q ss_pred HHCCCCCccCCceeeec
Q 009963 407 QEDKRAGETTRKGFYLY 423 (521)
Q Consensus 407 ~~~G~~G~k~g~GfY~y 423 (521)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=217.39 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GP 370 (521)
..+||+++..|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 8999999999 99999999
Q ss_pred HHHhhhcCchHHHHHhhHHHhhCCC-CCccccHHHHHHHCC
Q 009963 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (521)
Q Consensus 371 f~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~G 410 (521)
|+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999985 556889999999986
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=160.64 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=141.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||.+||.+|.++||+|++||+++++.... ..+.|... ..+..+.+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~----------~~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAEL----------LAAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHH----------HHHcCCcc------------cCCHHHHHHhC
Confidence 489999999999999999999999999999999984321 12334321 12234678999
Q ss_pred CEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCCC------CeE
Q 009963 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~~------~lv 295 (521)
|+||.|||.+.++...+|. .+.+.+++++++++. ||++++ ++++.+. -.|.+|+ .|+... .-+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDM-STISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999999888884 577788999998754 455554 4555442 2477887 576542 234
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-ccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~Gf---i~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.|+.| .+++.++.++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..+++
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~ 207 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVIS 207 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 44444 38999999999999999999999864 443 678877643 579998886 6999999999998
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-17 Score=161.77 Aligned_cols=187 Identities=17% Similarity=0.296 Sum_probs=137.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 23321 1122235678999
Q ss_pred EEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeeccccc-ccC------CCCeEE
Q 009963 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~-P~~------~~~lve 296 (521)
+||+|+|++..++..++. .+...+++++++++ +|+.++. ++.+.+... |+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999998888777654 35666788888874 5555543 565555332 566654 322 123345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-ccc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~G---fi~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~g 365 (521)
++.+ .++++++.+.++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++.+++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3688999999999999999999975 556 4788888765 789998885 6899999999998 444
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.7e-16 Score=153.11 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=120.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||++||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998877643 233322 123344567899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC------------CCCeE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (521)
|+||+|+|++.. .++++++.+.+++++++++ +++++...+......+.+|+|+||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997754 4678889888888888854 55566665555544556799999986432 24556
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.+++++.++++.++.+.++++.+|..++.++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 68899999999999999999999999998873
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-16 Score=154.47 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=137.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+++|+|||+|.||..+|..+++.|++|++||++++.++... +.|. ..+.++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 36899999999999999999999999999999998766532 1221 123344 3468
Q ss_pred CCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeeccccc-ccCC------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~-P~~~------~~ 293 (521)
+||+||+|+|+...++..++. .+.+.++++++++ ++|+.++. ++++.+... |.||+. |+.. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 999999999998887766653 4667788899887 45555543 555554322 667764 3322 13
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccch---hhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi---~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (521)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|+. +|+++.. .++|++.+.+ .|+++++++++++ +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3455555 3688999999999999999999975 56764 7776654 4799999886 6889999999997 4
Q ss_pred cC
Q 009963 364 FG 365 (521)
Q Consensus 364 ~g 365 (521)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=152.73 Aligned_cols=171 Identities=21% Similarity=0.228 Sum_probs=124.4
Q ss_pred cceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 146 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
.+++|+||| +|.||++||..|..+|++|++||+++.. +. .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~---------------------~~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD---------------------RA---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch---------------------hH---------------HHHH
Confidence 468999999 8999999999999999999999986310 00 1235
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccCCCCeEE--EEeC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve--iv~~ 300 (521)
++||+||+|+|++. ...++.++.+ +++++||++++|+. ++..+..... .+|+|.||++++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999885 4688888888 89999999998863 4566665543 4699999998776543322 4445
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhhchHH-HH---HHHHHHHHHcCCCHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMFF-PY---TQAAFLLVERGTDLYLI 357 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~nRil~-~~---~~ea~~l~~~G~~~~~I 357 (521)
+.++++.++.+.++++.+|..++.++. .++.++..+.. +. +.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 567888899999999999999999873 44444333221 22 23444555556665553
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=138.94 Aligned_cols=191 Identities=19% Similarity=0.209 Sum_probs=138.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
..++||+||.|.||++|+.+|.++||+|++||++.++.+... +.|.-. ..+..+..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHHh
Confidence 468999999999999999999999999999999999887643 344211 123346689
Q ss_pred CCCEEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcH---HHHHHhhcCCCceeecccc-cccCC------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV------MP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i---~~ia~~~~~~~r~ig~hf~-~P~~~------~~ 293 (521)
+||+||.+||...+++..++.. +.+.++++......+||+++ .+|+..+.+ .+..|. .|++. ..
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEeccccCCchhhhcC
Confidence 9999999999999998888764 33333444433223455554 377766532 244444 56653 23
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-h
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-K 363 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (521)
.+.|+.+ .+++.++.+..+++.+||+.+.++.+ .| -+.|+++.+. +.|++.+.+ .|+++..+-.++. +
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4556555 58999999999999999999999852 34 4778877653 578888875 6999999988887 4
Q ss_pred cC
Q 009963 364 FG 365 (521)
Q Consensus 364 ~g 365 (521)
-.
T Consensus 245 ~~ 246 (327)
T KOG0409|consen 245 RC 246 (327)
T ss_pred Cc
Confidence 33
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-14 Score=137.84 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=134.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
+||+|||+|.||.+|+..|.++|+ +|+++ |+++++.+... +.|. ..+.+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g~-------------~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLGV-------------KTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcCC-------------EEeCChH
Confidence 479999999999999999999998 89999 99988765421 1221 122333
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~ 300 (521)
+.+++||+||.|++ +....+++.++.+.++++++++|.+++++++.+....+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 44679999999996 3346778888887788889888999999999998776543 788888888876554444 5567
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecCc-----ccchh--hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d~-----~Gfi~--nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
..++++..+.+++++..+|+ ++++++. -|... ..++ .++.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776431 01111 1112 22223221 4457999999888876
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=130.69 Aligned_cols=146 Identities=20% Similarity=0.234 Sum_probs=101.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
|+||+|||.|.||+.||.+|+++|++|++||++++++++.. +.| .....+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999999887643 222 2234444 4578
Q ss_pred CCCEEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VM 292 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~~ 292 (521)
+||+||.|+|.+.+++ +++.. +.+.+.++.+++ ++||.+++ ++++.+.. .|.||. .|+. ..
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 8999999999887764 55555 778888998886 45566554 44444421 245555 3432 35
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
.+.-++.| ++++++.++++++.+|+..+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 66777777 6889999999999999988743
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=136.70 Aligned_cols=183 Identities=18% Similarity=0.212 Sum_probs=128.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+.+. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 2221 122333 45789
Q ss_pred CCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCC-------CC
Q 009963 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~-------~~ 293 (521)
||+||.|+|++..++..++. .+.+.++++++++ ++||.++. +++..+.. .|.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCc
Confidence 99999999998777655543 3555677888775 56666654 44444422 133333 34322 33
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.++.+ +++.++.++++++.+|+..+++++. .| .++|.++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4444444 7889999999999999999998852 23 24555443 34689988875 6999999877776
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=142.43 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=125.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||++||..|.++|++|.+|+++++..+... ....|..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999877544321 01122211 112333 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------------C
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------------~ 291 (521)
||+||.|||.+ ....++.++.+ .+++++|+++.+|+. .++.+...+.+..+|+|.||+...+ .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999986 45788899887 478888887766653 2345555445677899999975321 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHH--HHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAF 345 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~--~~~~ea~ 345 (521)
.....+++++.++++.++.+.++++.+|..++.+. +.+..++..+.. .++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33456788888999999999999999999999886 345555554432 3445444
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-13 Score=131.73 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=137.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+||+|||+|.||.+|+..|.++|+ +|+++|+++++++...+. .| +..+.+. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 479999999999999999999885 699999999887653210 12 1122333 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-eCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~ 301 (521)
.+.+||+||.||+. ..-.++++++.+.++++++++|...+++++.|...++.+.+++...|+.|+.....+..+ +++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 46899999999985 355788888888888899999999999999999988666689999999998877666654 677
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCc--ccc-hhhc---hHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNR---MFFPYTQAAF--LLVERGTDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~--~Gf-i~nR---il~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (521)
..+++..+.+.++|..+|+.. ++.+. ..+ .+.- -+..++.|++ ..++.|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 788888999999999999974 44421 000 0000 0112233443 23456777777666554
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=160.30 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHH
Q 009963 310 DLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAI 383 (521)
Q Consensus 310 ~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~ 383 (521)
.+.+++..+|+.++.+.+.+|||+||++.+++|||++++++|+ +|+|||.+|+ |+|||+ |||+++|.+|+|.++
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3455667778877766778999999999999999999999997 9999999999 999996 999999999999999
Q ss_pred HHhhHHHhhCCCCCccccHHHHHHHC-C
Q 009963 384 ATGMQFIENFPERTYKSMIIPIMQED-K 410 (521)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~-G 410 (521)
++++.+++.+++++.|++++.+|+++ |
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g 733 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG 733 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcC
Confidence 99999999999888899999999987 5
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-13 Score=130.87 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=133.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+++|+|||+|.||..|+..+.++| ++|.++|++++..+...+. .| +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999999876653221 01 1122333 3
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~ 301 (521)
.+.+||+||.|+|.. .-.++++++.+.+ +++|+|.+++++.+.+...+++..+++.+||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 467899999999754 3457777777665 467888999999999988776667899999998876655454 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecC-cc-cch-hh----chHHHHHHHHH-HH-HHcCCCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGN-CT-GFA-VN----RMFFPYTQAAF-LL-VERGTDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d-~~-Gfi-~n----Ril~~~~~ea~-~l-~~~G~~~~~ID~a~~ 362 (521)
.++++..+.+..+++.+|..+++..+ .. ... .. -++.. +.+++ .. ...|+++++-...+.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~-~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFL-FIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999999999975544322 11 111 11 12222 33333 33 357888888766665
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-13 Score=133.89 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=129.6
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 009963 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (521)
|||+|.||.+||..|+++|++|++||+++++.+... +.|. ..+.+. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 2221 123333 457899999
Q ss_pred EEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHHH---HHHhhcCCCceeecccc-cccCC-------CCeEEE
Q 009963 231 IEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFF-SPAHV-------MPLLEI 297 (521)
Q Consensus 231 Ieav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~~---ia~~~~~~~r~ig~hf~-~P~~~-------~~lvei 297 (521)
|.|||.+..++..++ ..+.+.+++++++++ +||++++. +++.+.. .|.+|. .|+.. ..+..+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999998766644433 567777788888764 45776653 3333321 255554 34432 345555
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~g 365 (521)
+.| +++.++.+.+++..+|+.++++++ ..|. ++|+++.. .++|++.+.+ .|++++++..++. +.|
T Consensus 132 ~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 555 578899999999999999999986 4454 56665543 3689998875 6899999999998 544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=132.09 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=133.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+||+|||+|.||.+|+..|.++| ++|+++|++++ .++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 469999999999999999999998 78999999764 4333211 012 1123333
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCC-CeEEEEe
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVR 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~-~lveiv~ 299 (521)
+.+.+||+||.||+.+. -.+++.++.+.+.++++|+|..++++++.+...+.+..++++.||+.|.... .+.-+++
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 44689999999998654 3466688887788889999988999999998877655679999998776553 3444557
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCc--c---cchh--hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~--~---Gfi~--nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
++..+++..+.+++++..+|+.. ++.+. . |... ..+ ..++.|++. ....|+++++.-.++.
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77788999999999999999854 43321 1 1110 011 223344433 3467899888888776
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=130.44 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=111.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|..+ ...+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~ 57 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELK 57 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHh
Confidence 379999999999999999999996 7899999998776532 233221 122333455
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc--CCCceeeccccc------ccC------C
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFS------PAH------V 291 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~--~~~r~ig~hf~~------P~~------~ 291 (521)
+||+||.|+|.+. ..+++.++.+ ++++++|++.+|+. ..+...+. .+.+|++.||+. |.. .
T Consensus 58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k--~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~ 132 (275)
T PRK08507 58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTK--AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYE 132 (275)
T ss_pred cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccch--HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhC
Confidence 6999999999764 3467788888 88899888765543 22222221 235799999985 322 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
...+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus 133 g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 133 GKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 346677788888899999999999999999999873
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=131.51 Aligned_cols=185 Identities=15% Similarity=0.179 Sum_probs=125.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2321 122321 1122234568999
Q ss_pred EEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcHH---HHHHhh-cCCCceeecccccc----cCCCCeEEEE
Q 009963 229 MVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP----AHVMPLLEIV 298 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~ia~~~-~~~~r~ig~hf~~P----~~~~~lveiv 298 (521)
+||.|||.+..++..++.. +.+.+.++.+++. +||+++. ++++.+ .+..+|+. +|+.. +....|.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999987776665542 4555677887764 5566654 444444 23334444 23321 1223445455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.| +++.++.++++++.+|+..+++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 7889999999999999999999863 332 45555543 3688888875 6899998777776
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=136.94 Aligned_cols=162 Identities=19% Similarity=0.148 Sum_probs=122.2
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+||+||| +|.||.++|..|..+|++|+++|++++....... +.|. ..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~gv-------------~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELGV-------------EYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcCC-------------eeccCHHHHhc
Confidence 4899998 7999999999999999999999999876533211 1121 123333 4578
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccc----cCCCCeEEEEe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P----~~~~~lveiv~ 299 (521)
+||+||.|+|.+. ...++.++.+.+++++++++.+|+ .+++.+...++...+|++.||+.. ......+.+++
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999753 357889998889999999988874 345566666555568999998743 23456777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhh
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVN 334 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~n 334 (521)
++.++++.++.+.+++..+|..++.+.. .+..++.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a 171 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMS 171 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 8888899999999999999999988763 3444433
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-12 Score=135.08 Aligned_cols=190 Identities=15% Similarity=0.223 Sum_probs=129.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
.+++|||||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|.. .+....+.++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 356899999999999999999999999999999999887643210 001210 1112233332
Q ss_pred --ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------
Q 009963 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH------- 290 (521)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~------- 290 (521)
++.||+||.|||.+..+. +++..+.+.+.++.|+++. |+.+.. ++++.+.. .|.||+ .|+.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~-sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDG-GNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 345999999999888765 4557788888888888754 344332 44444421 256665 3443
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCC------eEEEecC-cccc---hhhc-hHHH---HHHHHHHHHHc--CCCH
Q 009963 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKK------TPIVVGN-CTGF---AVNR-MFFP---YTQAAFLLVER--GTDL 354 (521)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk------~~vvv~d-~~Gf---i~nR-il~~---~~~ea~~l~~~--G~~~ 354 (521)
..+ .+++| .++++++.++++++.++. ..+++++ ..|. ++|+ +... .+.|++.+.+. |+++
T Consensus 142 ~G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 142 NGP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CCC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 234 34555 378899999999999985 4778885 3343 3444 4443 36899988864 8899
Q ss_pred HHHHHHHH
Q 009963 355 YLIDRAIT 362 (521)
Q Consensus 355 ~~ID~a~~ 362 (521)
+++-.++.
T Consensus 218 ~~l~~vf~ 225 (493)
T PLN02350 218 EELAEVFA 225 (493)
T ss_pred HHHHHHHH
Confidence 99998865
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=126.16 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=122.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (521)
.++|+|+|+|.||++||..+..+|+.|.+++++... ++.+ .+.|..+. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 468999999999999999999999988777666543 3332 12343321 1122 35
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------CCCe
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------~~~l 294 (521)
.+.++|+||.|||-.. -..+++++.+.+++++||++.+|+. +++.+....+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999664 4588899999999999999999976 3445555443222899999997662 2345
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMF 337 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil 337 (521)
+.+++++.++.+.+..+.++++.+|..++.+. +.+..+...+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vs 182 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVS 182 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHH
Confidence 66788888899999999999999998888886 34444444333
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-12 Score=135.92 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=131.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (521)
.+|+|||+|.||.+||..|+++|++|++||+++++.+...+.. ...|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999987654210 00121 1223444433
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~ 293 (521)
+.++|+||.+|+....+ ..++.++.+.+.++.||++.+++.+.+ .....+. --|.||+ .|+.. .+
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 23699999999887665 456688888899999988766655443 2333331 1266666 35432 34
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCe------EEEecC-cccc----hhhchHHH---HHHHHHHHHH--cCCCHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMFFP---YTQAAFLLVE--RGTDLYLI 357 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~------~vvv~d-~~Gf----i~nRil~~---~~~ea~~l~~--~G~~~~~I 357 (521)
. +++| .++++++.++++++.++.. ..++++ ..|. +.|-+... .+.|++.+++ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 4444 3788999999999999977 577775 3443 33445444 3689999985 68899999
Q ss_pred HHHHHh
Q 009963 358 DRAITK 363 (521)
Q Consensus 358 D~a~~~ 363 (521)
-.++..
T Consensus 215 ~~v~~~ 220 (470)
T PTZ00142 215 SEVFNK 220 (470)
T ss_pred HHHHHH
Confidence 888863
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=129.63 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=114.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.+++|+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|... ..+.+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 8999999998766542 223211 112233 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccCC---------
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~~--------- 291 (521)
.+++||+||.|+|... ...++.++.+.+++++++++.+|.- .+..+........+|++.||+.+.+.
T Consensus 63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 5789999999999753 4677888888888898886655432 12334444444458999999975331
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
...+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345777777889999999999999999999886
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-14 Score=149.56 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=118.7
Q ss_pred eEEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 37999999999998665 23 45688999999999998876655533322 111 11467778885
Q ss_pred -ccccCCCEEEEecc----------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcC--CCceeecccccc
Q 009963 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (521)
Q Consensus 222 -~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~--~~r~ig~hf~~P 288 (521)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.+ | +.+.+||+||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 67899999999998 45889999999999999999999999999999999988764 7 8999999999
Q ss_pred cCCC-----CeEE--EEeCCCCcHHHHHHHHHHHHhcCCe
Q 009963 289 AHVM-----PLLE--IVRTNQTSPQVIVDLLDIGKKIKKT 321 (521)
Q Consensus 289 ~~~~-----~lve--iv~~~~t~~e~~~~~~~l~~~lGk~ 321 (521)
+..+ +... ++... .........+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~c---~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGLC---HGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEEC---CcHHHHHHHHHHHhCCC
Confidence 8754 2222 33222 22455566666777763
|
linked to 3D####ucture |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=124.28 Aligned_cols=189 Identities=9% Similarity=0.063 Sum_probs=124.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.+||..|+++|++|.+||+++++++... +.|..... ...+. +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~----------s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVA----------NLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccC----------CHHHHHhhcCC
Confidence 3799999999999999999999999999999999876643 12211100 00011 23567
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhh-cCCCceeecccccccC--CCCeEEEEeCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~-~~~~r~ig~hf~~P~~--~~~lveiv~~~ 301 (521)
+|+||.|||.+ . -+.++.++.+.++++.++++.+++.+. .++...+ .+..+|+..+...++. ...+.-++.|
T Consensus 60 ~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999987 4 467778888888888888765554433 2333333 2223344443322111 1123334444
Q ss_pred CCcHHHHHHHHHHHHhcCC---eEEEecCc-ccc----hhhchHHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF----AVNRMFFP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~vvv~d~-~Gf----i~nRil~~---~~~ea~~l~~~-G--~~~~~ID~a~~ 362 (521)
+++.++.+.++++.++. ..+++++. .|. +.|-+... .+.|++.+++. | ++++++-.+|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78899999999999986 46778752 332 23444443 35789998875 4 59999999987
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=123.35 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=124.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence 3799999999999999999999999999999998876532 2221 11223322 22
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccc-cccCC------CCe
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHV------MPL 294 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~-~P~~~------~~l 294 (521)
++|+||.++|.+..+ ..++..+...++++.++++.+++.+ ..+++..+.. .|.+|. .|+.. ..+
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence 479999999987554 4556777777888887765433332 2234444322 255554 34332 123
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCC----eEEEecCc-ccc---hhhc-hHHHH---HHHHHHHHH---cCCCHHHHHH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNR-MFFPY---TQAAFLLVE---RGTDLYLIDR 359 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk----~~vvv~d~-~Gf---i~nR-il~~~---~~ea~~l~~---~G~~~~~ID~ 359 (521)
.++.+ .++++++.++++++.+++ ..+++++. .|. ++|+ +.... +.|++.+.+ .|++++++-.
T Consensus 132 -~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 132 -CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred -eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444 378899999999999998 78888862 332 3444 33332 578998886 5789999999
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
+++
T Consensus 209 ~~~ 211 (301)
T PRK09599 209 VWR 211 (301)
T ss_pred HHh
Confidence 988
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=125.83 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=111.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (521)
.++|+|||+|.||+++|..|.+.|++|+++|+++.. +.+. +.|. ....+.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 368999999999999999999999999999998632 2111 1121 11233333 3
Q ss_pred cCCCEEEEecccchhhHHHHHHHH-HhhCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccccCCC------CeE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P~~~~------~lv 295 (521)
.+||+||.|+|.. .-.+++.++ ...+++++++++.+|+ .+++.+...++...+|+|.||+.+++.. .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4699999999865 346777777 5667899999998884 5567777766555579999999877542 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.+.+. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788899999999999999999886
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.3e-12 Score=130.99 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=130.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
+||+|||+|.||..+|..|+++|++|++||++++.++...+... ..++..+.+. ...++++.+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 47999999999999999999999999999999998876432100 0000000000 0013355666664
Q ss_pred cccCCCEEEEecccchh--------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHH-hhcC--CCc-eeecc-cc
Q 009963 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS--KDR-IVGAH-FF 286 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~-~~~~--~~r-~ig~h-f~ 286 (521)
.+++||+||.|||.... ....+.+.+.+.++++++++. +||+++. ++.. .+.+ ..+ ....+ -+
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 48899999999997642 234556778888888887764 5666543 3432 2211 000 11111 11
Q ss_pred cccCCCC--e-------EEEEeCCCCcHHHHHHHHHHHHhcC-CeEEEecCc-cc---chhhchH----HHHHHHHHHHH
Q 009963 287 SPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFLLV 348 (521)
Q Consensus 287 ~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~vvv~d~-~G---fi~nRil----~~~~~ea~~l~ 348 (521)
+|....+ + -.++.| .+++..+.+.+++..++ +.++++++. .+ -++++++ .+++||+..+.
T Consensus 152 ~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 152 NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3432211 1 134555 47889999999999998 577777652 22 2344444 35689999888
Q ss_pred H-cCCCHHHHHHHHH
Q 009963 349 E-RGTDLYLIDRAIT 362 (521)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (521)
+ .|++++++-.++.
T Consensus 230 ~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 230 EALGIDVYEVIEAAG 244 (411)
T ss_pred HHhCCCHHHHHHHhC
Confidence 6 6999999988886
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-13 Score=148.81 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=82.7
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccc
Q 009963 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (521)
Q Consensus 327 d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (521)
..+|||+||++.+++|||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 36899999999999999999999996 9999999999 999997 99999999999999999999999999988899
Q ss_pred cHHHHHHHCCCCCccCCceee
Q 009963 401 MIIPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 401 ~~l~~~~~~G~~G~k~g~GfY 421 (521)
+++.+|+++| ++||
T Consensus 693 ~~l~~~~~~~-------~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG-------ESFY 706 (708)
T ss_pred HHHHHHHHcC-------CCCC
Confidence 9999999985 6786
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-13 Score=147.53 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=82.1
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccc
Q 009963 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (521)
Q Consensus 327 d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (521)
..+||++||++.+++|||++++++|+ +|+|||.+|+ ++|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 36899999999999999999999996 9999999999 999995 99999999999999999999999999988899
Q ss_pred cHHHHHHHCCCCCccCCceee
Q 009963 401 MIIPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 401 ~~l~~~~~~G~~G~k~g~GfY 421 (521)
+++.+|+++| +.||
T Consensus 686 ~~L~~~~~~~-------~~f~ 699 (699)
T TIGR02440 686 QRLVAMAAEK-------QSFY 699 (699)
T ss_pred HHHHHHHHcC-------CCcC
Confidence 9999999985 6676
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=121.62 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=122.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
++|+|||+|.||..||..|+++|++|++||+++++.+... +.|. ..+.+.++ ++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 56 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSK 56 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHh
Confidence 3799999999999999999999999999999998766532 1221 12233333 33
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH---HHHHHhhcCCCceeecccc-cccCC------CC
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV------MP 293 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i---~~ia~~~~~~~r~ig~hf~-~P~~~------~~ 293 (521)
++|+||.|+|.+..+ +.++..+.+.++++.+++.. |+.++ .++++.+.. .|.+|. .|+.. ..
T Consensus 57 ~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~-st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g 130 (299)
T PRK12490 57 LEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDG-GNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNG 130 (299)
T ss_pred CCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEEC-CCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcC
Confidence 379999999987555 45567777778888877644 33333 344444422 144554 23322 12
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCC---eEEEecCc-ccc---hhhchHH-H---HHHHHHHHHH-cC--CCHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFF-P---YTQAAFLLVE-RG--TDLYLIDR 359 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk---~~vvv~d~-~Gf---i~nRil~-~---~~~ea~~l~~-~G--~~~~~ID~ 359 (521)
..-++.| ++++++.++++++.+|. ..+++++. .|. ++|+++. . .+.|++.+.+ .| ++++++-+
T Consensus 131 ~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~ 207 (299)
T PRK12490 131 YCLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVAR 207 (299)
T ss_pred CeEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 2333444 68899999999999997 67888752 232 4454443 2 3689999886 56 78888888
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
++.
T Consensus 208 ~~~ 210 (299)
T PRK12490 208 LWR 210 (299)
T ss_pred HHc
Confidence 887
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=119.65 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=122.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 222 (521)
+||+|||+|+||.+|+..|.++| .+|++.|++++..+...++ -|. .. +++ .+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g~------------~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YGV------------VT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cCC------------cc-cCcHHH
Confidence 68999999999999999999999 5899999999987632211 111 11 333 35
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-eCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~ 301 (521)
.+.++|+||.||.. ..-.+++.++.. ..++.+++|...+++++.+...++ ..+++...|+.|+.+...+..+ .+.
T Consensus 59 ~~~~advv~LavKP--q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVKP--QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeCh--HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 67889999999953 455688888887 778999999999999999999987 6789999999998877666655 567
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
..+++..+.+.+++..+|+...+-
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEec
Confidence 889999999999999999876654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=143.96 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=134.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||+|.||.+||.+|+++|++|++||+++++.+... +.|.. ...+. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH-------------RCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHhc
Confidence 5899999999999999999999999999999998877643 23321 12333 45678
Q ss_pred CCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceee--cccc-cccC-------C
Q 009963 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH-------V 291 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig--~hf~-~P~~-------~ 291 (521)
||+||.|+|.+..++..++. .+.+.+.++.+++ ++||++++ ++++.+.. .| .+|. .|+. .
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence 99999999999888766653 4666677888776 45666665 44444422 24 4554 3443 3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEe-cC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv-~d-~~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
..|.-++.| +++.++.++++++.+|+..+++ ++ ..|. ++|+++.. .+.||+.+.+ .|++++.+-.++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456666666 6888999999999999988765 54 3343 55665543 3689998875 799999999998
Q ss_pred H-hcC
Q 009963 362 T-KFG 365 (521)
Q Consensus 362 ~-~~g 365 (521)
. +.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 8 554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-12 Score=130.91 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=119.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.++|..++. |++|++||+++++++...+.+...++..++. .......+++.+++. +.+++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence 379999999999999988875 9999999999999888664322111111110 000112244445554 45789
Q ss_pred CCEEEEecccchhhH---------HHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccccccCCCC-
Q 009963 227 VDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHVMP- 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k---------~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~P~~~~~- 293 (521)
||+||+|||++.+.| .++.+.+.+ ++++.+++ ..||+++. ++...+. + .++.| +|....+
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~--~~v~~-~PE~l~~G 146 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--T--ENIIF-SPEFLREG 146 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--c--CcEEE-CcccccCC
Confidence 999999999885433 344566766 57777765 45666654 4443321 1 13333 5543221
Q ss_pred -e-------EEEEeCCCCcHHHHHHHHHHHHh--cCC-eEEEecCc-ccc---hhhchHH----HHHHHHHHHHH-cCCC
Q 009963 294 -L-------LEIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTD 353 (521)
Q Consensus 294 -l-------veiv~~~~t~~e~~~~~~~l~~~--lGk-~~vvv~d~-~Gf---i~nRil~----~~~~ea~~l~~-~G~~ 353 (521)
+ -.++.|. +++..+.+.+++.. ++. .++++.+. .+. ++++.+. +++||...+.+ .|++
T Consensus 147 ~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 147 KALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 1 0233332 34556677777744 454 34345542 222 3444433 56899998875 6999
Q ss_pred HHHHHHHHH
Q 009963 354 LYLIDRAIT 362 (521)
Q Consensus 354 ~~~ID~a~~ 362 (521)
+.++-.++.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 999888884
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=125.92 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=126.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (521)
++||+|||+|.||.++|..|+++|++|++||+++++++..... +...+.+.++.| ++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence 5799999999999999999999999999999999988763211 111111111222 33334
Q ss_pred cCcccccCCCEEEEecccc--------hhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcC--CC-ce----
Q 009963 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI---- 280 (521)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~--~~-r~---- 280 (521)
++ +++||+||.|||.. ...-..+.+.+.+.++++++++ ..||+++. ++...+.. +. ++
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 33 45899999999975 2334456678888899998875 34555443 33332211 00 00
Q ss_pred -eecc---cccccC--CCC-------eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHH----H
Q 009963 281 -VGAH---FFSPAH--VMP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----P 339 (521)
Q Consensus 281 -ig~h---f~~P~~--~~~-------lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~----~ 339 (521)
.+.. -++|-. ... +.-++.+ .+++..+.+.++++.+++.++++++. .+ -++++.+. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0101 125521 111 1235544 37888999999999999877777642 22 23444443 5
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++||+..+.+ .|+++.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 6899998875 6999999877765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=142.73 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=133.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
..++|+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ...+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence 358999999999999999999999999999999998876532 22321 12233 457
Q ss_pred cCCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------C
Q 009963 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------V 291 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~ 291 (521)
++||+||.|||...+++..++. .+.+.+.++.+++ ++||+++. +++..+.. .-.|.+|. .|+. .
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999988777666653 3555677888776 45666665 34444321 01366665 3543 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc--c---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G--f---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
..|.-++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .++|++.+.+ .|++++.+-+++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345556666 678899999999999998777543233 2 55665543 3689988875 799999988888
Q ss_pred H-hcC
Q 009963 362 T-KFG 365 (521)
Q Consensus 362 ~-~~g 365 (521)
. +.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 7 544
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=118.63 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=134.3
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccc
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 237 (521)
|.+||..|+++|++|++||++++.++... .+...+.| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 88999999999999999999998654311 11112223 2233343 5578999999999976
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHH----HHHhhcCCCceeecccccccCC----CCeEEEEeCC------CC
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~----ia~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~------~t 303 (521)
. ..+.++..+.+.++++++++ ++|+.+... +...+..+.+.+|.||+.|... ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 5 35677888988899998887 455655543 3345544456778888876542 1224455443 34
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecCcccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCccHHHHh
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA 374 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d~~Gf---i~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~g~p~GPf~~~ 374 (521)
+++.++.++++++.+|+.+++++...|. ..|.++.+. ..|++.+.+ .|.+|.+.-.-+- . --.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~--~~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM--TLQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHH
Confidence 8899999999999999988888743333 345555443 567777775 4556655433332 1 113556777
Q ss_pred hhcCchHHHHHh
Q 009963 375 DLVGFGVAIATG 386 (521)
Q Consensus 375 D~~Gld~~~~~~ 386 (521)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777877766654
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-11 Score=119.36 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=120.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcccccccCcc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~-~ 223 (521)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+. +.... .+. .....+..+.+.+ .
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~ 68 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGI-KLPDNLRATTDLAEA 68 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCC-cCCCCeEEeCCHHHH
Confidence 3689999999999999999999999999999999887654321 10000 000 0001233344553 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-------HHHHhhcCCCceeecccc-cccC-----
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFF-SPAH----- 290 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-------~ia~~~~~~~r~ig~hf~-~P~~----- 290 (521)
+++||+||.|+|.. ....++.++.+.+++++++++.+++++.+ .+...... . ....++ .|..
T Consensus 69 ~~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~--~-~~~~~~~~P~~~~~~~ 143 (325)
T PRK00094 69 LADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPD--L-APIAVLSGPSFAKEVA 143 (325)
T ss_pred HhCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCC--C-CceEEEECccHHHHHH
Confidence 68999999999974 45778888888888899888777666542 22222211 0 011111 2332
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccc---------------------hhhchHH----HHHHH
Q 009963 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---------------------AVNRMFF----PYTQA 343 (521)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf---------------------i~nRil~----~~~~e 343 (521)
...++.+ .+ .+.+.++.+.++++..|..+....|..|. +.|..+. ..++|
T Consensus 144 ~g~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E 220 (325)
T PRK00094 144 RGLPTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAE 220 (325)
T ss_pred cCCCcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 1123333 32 36788999999999999877776554331 1222222 33577
Q ss_pred HHHHHH-cCCCHHHHHHH
Q 009963 344 AFLLVE-RGTDLYLIDRA 360 (521)
Q Consensus 344 a~~l~~-~G~~~~~ID~a 360 (521)
++.+.+ .|++++.+...
T Consensus 221 ~~~la~~~G~d~~~~~~~ 238 (325)
T PRK00094 221 ITRLGVALGANPETFLGL 238 (325)
T ss_pred HHHHHHHhCCChhhhhcc
Confidence 777764 57777776543
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-11 Score=118.68 Aligned_cols=184 Identities=17% Similarity=0.109 Sum_probs=126.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|||.|.||.++|..|..+|++|++++++.++..... .+.|. ...+..+.+++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhcC
Confidence 6899999999999999999999999999888754332210 11121 112223557899
Q ss_pred CEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC-------CCCeEE-EE
Q 009963 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-IV 298 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~-------~~~lve-iv 298 (521)
|+||.+||.... ..++ .++.+.++++++| +.++++++..+....+...+++-.+|..|.+ .+..+. ++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996643 5777 7788889999988 8888999988766554456788889998887 333222 23
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCeEE-----EecC-c-ccchhhc-hH----HHHHHHHHHH-HHcCCCHHHH
Q 009963 299 -RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGFAVNR-MF----FPYTQAAFLL-VERGTDLYLI 357 (521)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~~v-----vv~d-~-~Gfi~nR-il----~~~~~ea~~l-~~~G~~~~~I 357 (521)
.+...+.+..+.+..++..+|.++. .+.+ . ...+..+ ++ ..++..++.. ++.|.+|+.-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3455668889999999999998875 3332 1 2222222 22 2345556554 4668777653
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=118.68 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=117.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
|++|+|||+|.||.+|+..|.++| ++|++|+++.+. ++... ... .....+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~~-----------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DKY-----------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HHc-----------CCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 000 011123333
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-e
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~ 299 (521)
+.+.+||+||.|+|.. .-.+++.++.+.++++++|+|.+.++++++|...++. .+++.+.|+.|+.....+..+ .
T Consensus 59 ~e~~~~aDvVilavpp~--~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPL--AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 3478999999999854 3457888888888888889999999999999997753 489999999998876666655 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEE
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vv 324 (521)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678888999999999999987755
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=125.65 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=126.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----cc
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF 224 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~ 224 (521)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+.+ .+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988764321 00010 011122222 34
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CCe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~l 294 (521)
+++|+||.|||....+ .+++.++.+.+.++.||++.+++.+.+ .....+.. .|.||+ .|+.. .+
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence 5799999999987655 457788888888999887766554433 23333311 255555 34332 23
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeE------EEecC-cccc----hhhchHHHH---HHHHHHHHH--cCCCHHHHH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLID 358 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------vvv~d-~~Gf----i~nRil~~~---~~ea~~l~~--~G~~~~~ID 358 (521)
.++.| .++++++.++++++.++..+ .++++ ..|. +.|-+...+ +.|++.++. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444 47899999999999998763 67774 3343 334455443 689999873 688999998
Q ss_pred HHHHh
Q 009963 359 RAITK 363 (521)
Q Consensus 359 ~a~~~ 363 (521)
.++..
T Consensus 213 ~v~~~ 217 (467)
T TIGR00873 213 EVFTE 217 (467)
T ss_pred HHHHH
Confidence 88863
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=124.26 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=106.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (521)
++|+|||. |.||+++|..|.+. |++|+.+|++.+. ..+ .+.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999864 8999999985210 111 2357
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhh---CCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccCCC-----Ce
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHVM-----PL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~~-----~l 294 (521)
++||+||.|+|... -.++++++.+. ++++++|++.+|+.. ++.+ .....+|||.||+..++.. ..
T Consensus 50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999764 45788888775 689999999988762 2333 2233479999999866532 33
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-Ccccchhhch
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRM 336 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRi 336 (521)
+.+++. ...+.++.+.++++.+|..++.+. +.+..++..+
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 345554 344557889999999999998886 3344444433
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=114.70 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
++|+|||+|.||..|+..|.++|+ +|.++|++++..+...++ . ..+..+.+. +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~ 58 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEE 58 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHH
Confidence 379999999999999999999984 799999999876543210 0 012223333 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCe-EEEEeCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~ 301 (521)
.+.+||+||.|++.. .-.++++++.+.++++++++|.+++++++.+...+. .+++..+|..|...... .-++.++
T Consensus 59 ~~~~aDiVilav~p~--~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~ 134 (273)
T PRK07680 59 VISQSDLIFICVKPL--DIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS 134 (273)
T ss_pred HHHhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence 478999999999744 346778888888888889999999899999988764 34566666544322222 2334566
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
..+++..+.+.+++..+|. ++.+.
T Consensus 135 ~~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 135 RCSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCCHHHHHHHHHHHHcCCC-EEEEC
Confidence 6778888999999999995 44554
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=112.67 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=121.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
+||+|||+|.||.+|+..|.++|++ +.++|++++..+...+. .+ ....+.+. +.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~~------------~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------FP------------KVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------cC------------CceEeCCHHHH
Confidence 3799999999999999999999864 58899998876553211 00 11123333 34
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+.+||+||.|+|.+ ....++.++. +.++.+++|..++++++.+...+....+++..||+.|.....-+..+...
T Consensus 59 ~~~aDvVilav~p~--~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-- 132 (258)
T PRK06476 59 VDRSDVVFLAVRPQ--IAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-- 132 (258)
T ss_pred HHhCCEEEEEeCHH--HHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC--
Confidence 67899999999843 3456666662 46778888888999999999888655677888888776544333433321
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecC--ccc------chhhchHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGN--CTG------FAVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d--~~G------fi~nRil~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (521)
.+.+.++++.+|..+++..+ ..- +..| + ..++.++..+ ...|+++++...++.
T Consensus 133 ----~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~-~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ----DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-Y-FGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ----HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-H-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 14788999999988775432 111 1111 1 1244555544 457888888776664
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=111.00 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=127.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+||+|||+|.||.+++..++++|. + |+++++ +++.++...+. .+ +..+.+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3589999999999999999998873 3 777887 46655442211 01 1123344
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEe
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~ 299 (521)
+.+.++|+||.|+|... -+++++++.+.++ +.+|+|.+.+++++.|...++...+++..||+.|......+. ++.
T Consensus 61 ~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 34689999999999763 3677888877665 568889999999999998886556788899987766543332 334
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCcccchh---hch---HHHHHHHHH-H-HHHcCCCHHHHHHHHH
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV---NRM---FFPYTQAAF-L-LVERGTDLYLIDRAIT 362 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~---nRi---l~~~~~ea~-~-l~~~G~~~~~ID~a~~ 362 (521)
....+++..+.+++++..+|..+++ .+..-... .-. +..++.+++ . .+..|+++++-.+++.
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5667889999999999999998864 32111111 111 111223332 2 3467888877666654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=123.95 Aligned_cols=126 Identities=21% Similarity=0.399 Sum_probs=95.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.+||+|||+|.||+++|..++..|+ +|+++|++++.+.. . .++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-----~ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-----ALDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-----HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987532 1 11111110 0111223677778899999
Q ss_pred CCCEEEEec-------------------ccchhhHHHHHHHHHhhCCCC-ceEEecCCcCcHHHHHHhhcCC-Cceeecc
Q 009963 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (521)
Q Consensus 226 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ia~~~~~~-~r~ig~h 284 (521)
+||+||+++ .++..++++++.++.+.+++. .|++||.+.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 667888999999999999774 5668999888877777776665 8899986
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=117.12 Aligned_cols=204 Identities=16% Similarity=0.091 Sum_probs=136.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||+|.||.++|..|..+|++|+++++. .+..+.+. +.|. ..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhc
Confidence 58999999999999999999999998876554 33333321 1221 12222345789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCC-------CCeE-EEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~-------~~lv-eiv 298 (521)
||+||.+||.... ...+.+++.+.++++. ++|...+++++.+...++...+++...|+.|.+. ...+ -++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996633 4466677888888776 5688889999988877755567999999999973 4444 343
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCe-------EE--Eec-Ccccc--hhhchHHHHHHHHH-HHHHcCCCHHHHHHHHH-h
Q 009963 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYTQAAF-LLVERGTDLYLIDRAIT-K 363 (521)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--vv~-d~~Gf--i~nRil~~~~~ea~-~l~~~G~~~~~ID~a~~-~ 363 (521)
.++..+.+..+.+..++..+|.+ .. .+. |--+- ...-..-+|+...+ .|++.|.+|+.--.... .
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66667888899999999999988 21 221 11111 11112223332222 23788998876555443 2
Q ss_pred cCCCccHHHHhhhcCch
Q 009963 364 FGMPMGPFRLADLVGFG 380 (521)
Q Consensus 364 ~g~p~GPf~~~D~~Gld 380 (521)
+ .|--+++-..|+.
T Consensus 218 ~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 218 L---KLIVDLIYEGGIT 231 (314)
T ss_pred H---HHHHHHHHHhcHH
Confidence 2 5777777777774
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-10 Score=114.60 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=106.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (521)
++||+|||+|.||+.+|..|+++|++|+++|+++. .+... +.|. ++ ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 1121 00 000001112344455666
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeeccccc-----ccCC--CCe
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~hf~~-----P~~~--~~l 294 (521)
.+.++|+||.||+... ..++++++.+.+++++++++.++++.. +.+...+.....+.|.++++ |... ...
T Consensus 70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 7889999999998653 467888999989999998888888764 45666554333344545532 2110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
-.+.-+. .+.+..+.++++..|....+.+|..+
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 0111121 23467888999999988888877543
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=128.04 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=117.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
++||+|||+|.||.+++..+.++| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 579999999999999999999999 47999999998766532 223211 012233 34
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc-CCCceeecccccccC----------
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~-~~~r~ig~hf~~P~~---------- 290 (521)
+++||+||.|+|.+ ....+++++.+.+++++++++.+|+. .++.+...+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999965 46788899988888888876555432 2556665543 356899999985222
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
..+.+.+++...++++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567788888899999999999999999888886
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=117.23 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=85.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++++.++|++++.. |+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~--~p---------------------------------- 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQK--GP---------------------------------- 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.|..++.++++++++.+|++||+++
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 1445788999888778899999999999999999999999999999988654
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=117.34 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 14446788888877788999999999999999999999999999999887654
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=135.29 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=76.6
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
+..|+||++.++++||++++++|+ +|+|||.+|+ ++|||+ |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~ 702 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence 356999999999999999999994 9999999999 999986 9999999999999999999764 57777788999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009963 403 IPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY 421 (521)
+++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999875 6786
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=114.64 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=87.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||.++++.+|..|+++++..+ |
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~----------------------------------- 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P----------------------------------- 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999863 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
..+.+.|+.++.+...+..+++..|+..|...+.+++.++++.+|.++|+.+.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 14457889999999999999999999999999999999999999988776653
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-11 Score=117.04 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=86.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q----------------------------------- 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhccCCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~--~s~~a~~~~~aF~~kr~~~k~~ 135 (521)
.+...+|++++.....++++++..|.+.+..++ .++++++++.+|++||+.+|.|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 245578899988878889999999999888885 5999999999999999888754
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-11 Score=117.68 Aligned_cols=96 Identities=24% Similarity=0.284 Sum_probs=85.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|+++++++|.+++++++.. |+
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASF--SL---------------------------------- 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998774 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
+++..+|++++.....++++++..|.+.|..++.|+++++++++|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 2556789999988888999999999999999999999999999999987654
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=120.31 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+||++++.. |+
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~p---------------------------------- 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI--PL---------------------------------- 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~--------~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+.. .++++++..|...+..++.|++++ +++.+|++||++.-
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f 278 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPF 278 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 144578888888766 468999999999999999999997 49999999998754
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-11 Score=121.21 Aligned_cols=122 Identities=22% Similarity=0.358 Sum_probs=90.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
|+|||+|.||.++|..++..|+ +|+++|++++.+ ++... ...+ . ........++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~--dl~~-~--------~~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKAL--DISQ-A--------APILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH--HHHH-h--------hhhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754 32211 1110 0 00111124666677888999999
Q ss_pred EEEEec--------------ccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcC-CCceeec
Q 009963 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 229 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~-~~r~ig~ 283 (521)
+||+++ +++..+++++++++.+.++++. |++||.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 7889999999999999998777 46788877766666666554 5678876
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=116.94 Aligned_cols=96 Identities=32% Similarity=0.315 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM--PP---------------------------------- 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998764 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.....++++++..|.+.|..++.|+++++++++|+++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2555788999888788899999999999999999999999999999987654
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=116.77 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 1445788999888778899999999999999999999999999999987654
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=117.06 Aligned_cols=95 Identities=27% Similarity=0.423 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P----------------------------------- 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.++..+|++++.....++++++..|.+.+..++.++++++++.+|++||++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 258 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP 258 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence 245578889988878889999999999999999999999999999998864
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-11 Score=115.81 Aligned_cols=96 Identities=31% Similarity=0.484 Sum_probs=85.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.....+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2455788888888777899999999999999999999999999999987654
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-10 Score=109.77 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=109.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+||+|||+|+||++|+..+.++|. +++++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999998873 499999887532 00 001122234
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCe-EEEEeCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQ 302 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~~ 302 (521)
+.+||+||.|++.. .-..++.++.+.++++ +++|..++++++.+...++...+++...|..|.....- .-+++.+.
T Consensus 55 ~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 67899999999754 4568888888777654 56788999999999887765556777777777665444 34557777
Q ss_pred CcHHHHHHHHHHHHhcCCeEEE
Q 009963 303 TSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~vv 324 (521)
.+++..+.+.+++..+|...++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8888899999999999987655
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.9e-10 Score=115.48 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=124.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|||.|.||..+|.+|+. |++|++||+++++++... .|.. ..++... ..++.++++.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~ 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence 689999999999999999877 699999999999988753 2221 0111111 23566777777
Q ss_pred cccCCCEEEEecccch------hhHHH--HHHHHHhhCCCCceEEecCCcCcHH---HHH-HhhcC--CCceeeccc---
Q 009963 223 SFKDVDMVIEAIIENV------SLKQQ--IFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS--KDRIVGAHF--- 285 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~------~~k~~--v~~~l~~~~~~~~il~sntS~l~i~---~ia-~~~~~--~~r~ig~hf--- 285 (521)
.+++||+||.|||... ++... ..+.+.+.++++.+++ ..||+++. ++. ..+.. ..++ +-.|
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~-~~~~~~~ 150 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTF-NQDFYVG 150 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCc-CCCeeEe
Confidence 8899999999999662 22222 2356778888888775 45566553 221 22211 0011 1111
Q ss_pred ccccCCC---------CeEEEEeCCCCcHHHHHHHHHHHHhcC-CeEEEecC-cccc---hhhchHH----HHHHHHHHH
Q 009963 286 FSPAHVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLL 347 (521)
Q Consensus 286 ~~P~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l 347 (521)
|+|.... .+--++.|. +++..+.+..+++.+. ..++++.+ ..+. ++|+++. +++||++.+
T Consensus 151 ~~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 151 YSPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred eCCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2443221 122255553 4677888899998875 34566654 2232 4455443 568999988
Q ss_pred HH-cCCCHHHHHHHHH
Q 009963 348 VE-RGTDLYLIDRAIT 362 (521)
Q Consensus 348 ~~-~G~~~~~ID~a~~ 362 (521)
.+ .|+++.++=.++.
T Consensus 229 ae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 229 FNRLNIDTEAVLRAAG 244 (425)
T ss_pred HHHhCcCHHHHHHHhc
Confidence 75 6999999877765
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=133.15 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=76.9
Q ss_pred ccchhhchHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G-~-~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
...|+||++.+++||+++++++| + +++|||.++. |+|||+ |||+++|.+|+|.+.++++.+. .+++++.|+++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~ 702 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHH
Confidence 35699999999999999999999 4 9999999999 999997 9999999999999999999654 78888888999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009963 403 IPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY 421 (521)
+.+|+++| +.||
T Consensus 703 l~~~~~~g-------~~f~ 714 (714)
T TIGR02437 703 LREMAKNG-------QSFY 714 (714)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999985 5676
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-11 Score=115.99 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=85.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.+++++++.. |+
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAK--SP---------------------------------- 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1445788999888888899999999999999999999999999999887654
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=115.95 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=83.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAK--DT---------------------------------- 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|++||+
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~ 248 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRK 248 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCC
Confidence 14446888888877778899999999999999999999999999999875
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=116.47 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T----------------------------------- 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|++||+++
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 273 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPV 273 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444688899888788899999999999999999999999999999988765
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=114.85 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++.. |+
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGC--GP---------------------------------- 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 14456888888887788999999999999999999999999999999874
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-10 Score=113.92 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=98.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
.+||+|||+|.||.+||..|+++|++|++|+++++..+.....- ..+..-+. .....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~--------~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAER--------ENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhC--------cccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 35899999999999999999999999999999988766543210 00100000 0011123345555 4478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc-----HHHHHHhhcC----CCceeecccccccC---CCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS----KDRIVGAHFFSPAH---VMP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-----i~~ia~~~~~----~~r~ig~hf~~P~~---~~~ 293 (521)
+||+||.|+|+.. + ++++ +.+++++++++.+.++. ...+++.+.. ...+++ -|..+.+ ..+
T Consensus 74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 9999999999873 2 3333 45667777776666554 3355554421 111121 1111111 113
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.+.++.+ .+++.++.+++++...|..+.+..|
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~d 178 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRD 178 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCC
Confidence 3344444 3688899999999999987775444
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=114.56 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T----------------------------------- 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1445688888888778899999999999999999999999999999987654
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=114.63 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=85.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~----------------------------------- 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P----------------------------------- 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1455788899888778899999999999999999999999999999887654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-10 Score=106.21 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=107.4
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+||| +|.||++++..|+++|++|+++++++++++......... ....| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 4799997 899999999999999999999999998876543221110 00011 00 01222333466889
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-----------------HHHHHhhcCCCceeeccccccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-----------------~~ia~~~~~~~r~ig~hf~~P~ 289 (521)
+|+||.|||... -.+++.++...++. ++++|.+.++++ +.+++.++...+++....+.|.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998653 35666777666654 778777777665 3455555432677777544332
Q ss_pred CC-------CCeEEEEeCCCCcHHHHHHHHHHHHhc-CCeEEEecC
Q 009963 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (521)
Q Consensus 290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~vvv~d 327 (521)
.. .+.-..+.|+ +++..+.+.++.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345664 566788899999999 999998874
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=114.42 Aligned_cols=96 Identities=27% Similarity=0.440 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.+...+++++++.|.+.+..++.|+++++++++|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2455788999888888899999999999999999999999999999988654
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=118.34 Aligned_cols=125 Identities=23% Similarity=0.390 Sum_probs=93.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.++|..++..| .+|.++|++++.++ +.. ++..... .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhhc------cccCCCeEEEeCCCHHHhCC
Confidence 59999999999999999999999 69999999987754 221 1110000 00111135666678899999
Q ss_pred CCEEEEec--ccch------------hhHHHHHHHHHhhCCCC-ceEEecCCcCcHHHHHHhhcCC-Cceeecc
Q 009963 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (521)
Q Consensus 227 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ia~~~~~~-~r~ig~h 284 (521)
||+||+++ |+++ .+++++.+.+.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 7766 78999999999998777 5667888877766666666555 7888876
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-10 Score=122.85 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=108.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
.++|+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.|. ....+.++ +.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHHh
Confidence 478999999999999999999999999999998642 2211 1221 12234433 43
Q ss_pred -CCCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccccCCCC--------
Q 009963 226 -DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP-------- 293 (521)
Q Consensus 226 -~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-------- 293 (521)
+||+||.|||.. .-..++.++.. .+++++|+++.+|+ .+++.+...++...+|++.||+.+.....
T Consensus 424 ~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 589999999954 34566777654 57889999988887 45566666655555799999998766431
Q ss_pred eE--EEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LL--EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
++ .++.++....+.++.+.+++..+|..++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1233444556667778899999999888886
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=115.71 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=87.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKL--PS---------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~ 135 (521)
.+...+|++++.....++++++..|.+.+..++.|+++++++.+|++|.+.||..
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 1444688888888777899999999999999999999999999999988777643
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=114.30 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=85.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|++|+++||||+|||++++++.|.+++++++.. |+
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~--~~---------------------------------- 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASK--SP---------------------------------- 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.++++.|.+.+..++.|++.++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 1444678888888778899999999999999999999999999999988754
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=113.95 Aligned_cols=96 Identities=25% Similarity=0.359 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-P----------------------------------- 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.|..++.++++++++.+|++||+++
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 2455788888887777899999999999999999999999999999987654
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=113.04 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P----------------------------------- 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.|..++.+++.++++.+|++||+++
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 1445688888888788899999999999999999999999999999987654
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=114.02 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++++.++|++++.. |+
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGN--AP---------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++.++.|.+.+..++.|+++++++.+|++||+++
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1445688888888778899999999999999999999999999999988654
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=114.47 Aligned_cols=96 Identities=21% Similarity=0.182 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.+++++++.. |+
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~--~~---------------------------------- 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG--PT---------------------------------- 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||+++
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=113.41 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=84.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARA--AP---------------------------------- 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhc--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.++++.|.+.+..++.++++++++.+|++||+++
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=116.91 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754321111111 00 011123566677888899
Q ss_pred CCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcC-CCceeec
Q 009963 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~-~~r~ig~ 283 (521)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3566889999999999986653 34565544333333333222 3566665
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=113.34 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=84.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAAN--GP---------------------------------- 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1445678888887777899999999999999999999999999999876543
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=113.23 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=84.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999987752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.+...++++++..|.+.|..++.++++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 1444678888888788899999999999999999999999999999987643
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=107.16 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=129.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
|||+|||.|-.|...+.+|+..||+|+.+|+++++++...+.. +..++.+++++.. -+|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence 5899999999999999999999999999999999998765443 2233444443322 14688999986
Q ss_pred cccCCCEEEEecccchh--------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhc--CCCceeeccccccc
Q 009963 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA 289 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~--~~~r~ig~hf~~P~ 289 (521)
+++++|++|.||+.+.. ....+.+++.++++..++++ +-||+|+. .+...+. .+.+-.++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 58999999999965433 44566778888888766664 56788763 3333221 111111111 2332
Q ss_pred C----------CCCeEEEEeCCCCcHHHHHHHHHHHHhc--CCeEEEecCcc-c----chhhchHH---HHHHHHHHHHH
Q 009963 290 H----------VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE 349 (521)
Q Consensus 290 ~----------~~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~vvv~d~~-G----fi~nRil~---~~~~ea~~l~~ 349 (521)
- ..|-- ||-|.. ++.+.+.+.+++..+ ...|+++.+.. . +..|-+|+ +++||-..+.+
T Consensus 151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111 333332 222455555565543 55677665422 1 34566665 57899988876
Q ss_pred -cCCCHHHHHHHH
Q 009963 350 -RGTDLYLIDRAI 361 (521)
Q Consensus 350 -~G~~~~~ID~a~ 361 (521)
-|++.++|-.++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 588888887765
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-10 Score=113.31 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P----------------------------------- 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.+..++.++++++++.+|++||++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 1445688888888778899999999999999999999999999999987654
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=112.67 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=83.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~----------------------------------- 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P----------------------------------- 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.......++.++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1444678888776555678889999999999999999999999999988754
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=114.37 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||+++++++|.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 578999999999999999999999999999999999998863112
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.++++++++.+|++||++.
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 1445688888888778899999999999999999999999999999987654
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=112.74 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 2455788899888778899999999999999999999999999999987654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=107.30 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=102.0
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccchh
Q 009963 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (521)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (521)
||..|.++| ++|+.+|++++.++.+. +.|.++. ...+.+.+++||+||.|+|.+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHHH-
Confidence 678888998 79999999999887753 3454431 1222567899999999998664
Q ss_pred hHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------------CCCeEEEEeCCCCcH
Q 009963 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (521)
Q Consensus 240 ~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------------~~~lveiv~~~~t~~ 305 (521)
-..+++++.+.+++++++++.+|.. ++..+...+....+|+|.||+..++ ....+.+++++.+++
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 5688999999999999999988875 3455556555567999999996551 245677889999999
Q ss_pred HHHHHHHHHHHhcCCeEEEec
Q 009963 306 QVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999888875
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=112.23 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=84.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.++|++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVAN--SP---------------------------------- 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.+. ++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 144568888888777788888 8899999999999999999999999988654
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=108.42 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=93.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||.+||..|+.+|++|++||+++.. + ..+.+++|
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~---------------------~---------------~~~~~~~a 48 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL---------------------S---------------LAAVLADA 48 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC---------------------C---------------HHHHHhcC
Confidence 58999999999999999999999999999998530 0 01235689
Q ss_pred CEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCcHH------HHHH-hhcCCCceeecccccccC------CCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VMP 293 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i~------~ia~-~~~~~~r~ig~hf~~P~~------~~~ 293 (521)
|+||.|+|.. ..+.++.++... +++++++++.|+++++. ++.. .+.. .+++. +..|.. ..+
T Consensus 49 dvvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~~ 123 (308)
T PRK14619 49 DVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGLP 123 (308)
T ss_pred CEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCCC
Confidence 9999999974 456777888764 67888888876655433 2211 1111 12210 112211 112
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
...++.+ .+.+..+.+.+++...|..++..+|..|
T Consensus 124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 2333333 3678889999999999988886666333
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-10 Score=112.99 Aligned_cols=96 Identities=24% Similarity=0.208 Sum_probs=83.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+|||++++|+||+++||||+|||+ +++.+++.++|++++..+ |
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p---------------------------------- 219 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P---------------------------------- 219 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999985 889999999999998852 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++.
T Consensus 220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888887778899999999999999999999999999999987654
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=112.45 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=83.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P----------------------------------- 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..| ...+..++.++++++++.+|+++|+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1445678888887778899999998 557889999999999999999876543
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=113.05 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=84.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+++|++++|+||+++||||+|||+ +++++.+.+++++++.. |+
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~~--------------------------------- 217 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--SP--------------------------------- 217 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--CH---------------------------------
Confidence 5789999999999999999999986 88999999999999875 22
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|+++|+++
T Consensus 218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 1445688888887777899999999999999999999999999999988644
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=111.86 Aligned_cols=96 Identities=26% Similarity=0.379 Sum_probs=84.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++++.|.++|++++.. |+
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~--~~---------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAG--PA---------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998775 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.|..++.++++++++++|+++++++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 1334678888888778899999999999999999999999999999987543
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-10 Score=123.88 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=87.2
Q ss_pred cccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCc
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (521)
++||++++|+||+++||||+|||++++++++.++|++++..+ | .
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence 589999999999999999999999999999999999998862 2 2
Q ss_pred hHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhccCCC
Q 009963 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (521)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~~~aF~~kr~~~k 133 (521)
|...+|++++.+...+++++ +..|.+.|..++.|+++++ ++.+|++||+++-
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f 545 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQF 545 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCC
Confidence 45578999999999999999 9999999999999999999 9999999998753
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-10 Score=123.47 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=86.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++|||++|||++++++++.++|++++..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4689999999999999999999999999999999999998862 2
Q ss_pred chHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~~~aF~~kr~~~ 132 (521)
.|...+|++++.+...+++++ +..|+++|..++.|+++++ ++.+|++||++.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~ 540 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQ 540 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCC
Confidence 145578899999888999999 9999999999999999999 999999998864
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=111.26 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=82.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.|.+|+++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P----------------------------------- 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHH----HHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~----~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|. +.|..++.++++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 14446788888877788999998886 48888999999999999999987654
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.1e-10 Score=110.01 Aligned_cols=93 Identities=24% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|+++++. |+
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAF--PQ---------------------------------- 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.....++++++..|...+..++. +++++++.+|+++++
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 1444678888887777899999999998888887 999999999998765
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=104.51 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=97.9
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccCCCEEEEecccc
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~ 237 (521)
|.+||.+|+++||+|++||+++++++... .+.+.+.|.. .+++ .+.+++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA~-------------~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGVK-------------VVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCCe-------------ecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 1112233421 2233 46688999999999977
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc----CCCceeecccccccC--CCCeE--E------EEeCCCC
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VMPLL--E------IVRTNQT 303 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~----~~~r~ig~hf~~P~~--~~~lv--e------iv~~~~t 303 (521)
..++ +++..+.+.++++++++ ++||+++..+...+. ...+-+|+..|.|.. .++.= - .......
T Consensus 93 aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 6554 45577888889999886 577888775544332 122334544444432 22211 1 1222346
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+++.++++.++.+..|+.+.++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 78999999999999999999885
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-10 Score=110.74 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=83.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|| ++++.+++.+++++++.. |+
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~--~~---------------------------------- 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK--PL---------------------------------- 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 57899999999999999999999 788999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 1445688888887778899999999999999999999999999999988654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=110.08 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=110.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
+||+|||+|.||.++|..|+++|++|++|.++++..++.... +.+- ++.. |.. ....+..++|++ .+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Ccc-------CCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999988774432 1110 0111 111 224567788875 4677
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc------HHHHHHhhcCCCceeecccccccC-------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID------LNLIGERTYSKDRIVGAHFFSPAH-------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~------i~~ia~~~~~~~r~ig~hf~~P~~-------~~~ 293 (521)
||+|+.+||.. .-+.+++++...+++++++++.+-++. ++++....- |...++ +.+.|+ ..|
T Consensus 72 ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l-~~~~~~--vLSGPs~A~EVa~g~p 146 (329)
T COG0240 72 ADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL-PDNPIA--VLSGPSFAKEVAQGLP 146 (329)
T ss_pred CCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc-CCCeEE--EEECccHHHHHhcCCC
Confidence 99999999976 467888888888899999988876543 345444321 211122 223332 244
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
...++.+ .+++..+.++.+|..--..+....|..|
T Consensus 147 ta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 147 TAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred cEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 4444555 4677777788887774455555556544
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=109.61 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=83.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S----------------------------------- 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++.+..|.+.+..++.|+++++++.+|.+||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 14457889998887888999999999999999999999999999998764
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-10 Score=110.37 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=81.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P----------------------------------- 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++.. |.+.+..++.|+++++++.+|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 144467888888877888888765 5568888999999999999999987643
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-10 Score=110.04 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.++|++++.. |+
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQK--SP---------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... .+..+..|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 1344677777765432 35556678889999999999999999999988654
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-08 Score=98.86 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=129.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH---H-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR---V-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~---i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
.+|+|||+|-+|-.+|..++++|++|+.+|+|+.+.+..... | ...+...++. ++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence 799999999999999999999999999999999988765321 1 1112223333 4577899
Q ss_pred CcccccCCCEEEEecccch--------hhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcC--CCceeecccc-
Q 009963 220 DYESFKDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS--KDRIVGAHFF- 286 (521)
Q Consensus 220 ~~~~~~~aDlVIeav~e~~--------~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~--~~r~ig~hf~- 286 (521)
+.+.++.||++|.|||... ..-.+..+.+.+.+.++.+++--+++.| .+++..-+-. +.=..+--|+
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 9999999999999998543 3344556678999999987764333322 2344332211 1111222222
Q ss_pred --cccCCCC---eEE------EEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcc-cc---hhh----chHHHHHHHHHHH
Q 009963 287 --SPAHVMP---LLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-GF---AVN----RMFFPYTQAAFLL 347 (521)
Q Consensus 287 --~P~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~-Gf---i~n----Ril~~~~~ea~~l 347 (521)
+|-..+| +.| |+.| .+++..+.+..+.+.+=+..+.+.+.. .. +.. -+-.++.||-..+
T Consensus 158 aysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred eeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5554432 222 4444 578888888888888766666665421 21 222 2445788997776
Q ss_pred H-HcCCCHHH-HHHHHH
Q 009963 348 V-ERGTDLYL-IDRAIT 362 (521)
Q Consensus 348 ~-~~G~~~~~-ID~a~~ 362 (521)
. +.|++..+ |+.|-+
T Consensus 236 ~~~~GIdvwevIeaAnt 252 (436)
T COG0677 236 CNAMGIDVWEVIEAANT 252 (436)
T ss_pred HHHhCCcHHHHHHHhcc
Confidence 6 57997655 555544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-10 Score=101.48 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=75.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDV 227 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (521)
||+|||+|.||.++|..|+++|++|++|.++++.++...+. .......+. ......+..++|+ +.++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877664321 000000000 1122356677887 468999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
|+||.+||..- -+.+++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999774 4789999999999999998887665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-10 Score=109.47 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++.. |+
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQN--SP---------------------------------- 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.... ..+.....|.+.+..++.|+++++++.+|++||+++
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 265 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD 265 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence 134467777776543 345555678889999999999999999999988764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-09 Score=114.30 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=104.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (521)
-++|+|||+|.||..+|..|.++|++|++||++... +.+. +.|. ....+.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~Gv-------------~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLGV-------------SFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcCC-------------EEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2211 1121 12334433 3
Q ss_pred cCCCEEEEecccchhhHHHHHHHHH-hhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccCC-----CCeEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~-----~~lve 296 (521)
.+||+||.|+|.. .-..++.++. +.++++++|++.+|... +..+...++...+|+|.||+..++. .....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 4699999999964 3467777775 56788999988776542 3445555544457999999865541 11112
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 223334567788899999999999886
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=108.18 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhh-CCh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.... .+. +..++.|.+.+..++.|+++++++.+|++||+++
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 144467888876543 333 5778889999999999999999999999988654
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=108.65 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=78.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R----------------------------------- 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhC-ChHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... ++++.+..|..... .++.|+++++++.+|++||+++
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888776554 68888887875432 3578999999999999987654
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=108.02 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++|++.|.+++++++..+ |
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P----------------------------------- 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~l~~s~-~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+ .+..++.++ ++++++.+|+++|.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 144578899998888889999888764 455678898 89999999999887
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=93.38 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=103.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
|++++|+|+|.||+++|..|+++||+|++-.++.+ +++.+.+. ....++.....++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 57899999999999999999999999999966544 44433211 112344555667789
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC----------------cHH-HHHHhhcCCCceeeccccc-
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS- 287 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l----------------~i~-~ia~~~~~~~r~ig~hf~~- 287 (521)
.||+||.+||-. --..+.+++...+. +.|+++.|-.+ +.+ .++..+++. +++.. |.+
T Consensus 60 ~aDVVvLAVP~~--a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPFE--AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccHH--HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 999999999854 34577788877665 77777665432 122 334444433 44432 321
Q ss_pred --------ccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 288 --------PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 288 --------P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+.......-.+++ -+.++.+.+.++.+.+|..|+.++.
T Consensus 135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 1111334445566 3778889999999999999999874
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=110.03 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=77.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++++.+||++++..+ |
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P----------------------------------- 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++..... .+.....|.+.+..++.|+++++++.+|++||+++.
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 1444678888766443 333334455888899999999999999999887653
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=107.22 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea 233 (521)
||..||.+|+++|++|.+||+++++.+...+. .|. . ..+....++++ ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988764320 110 0 01223344433 3358999999
Q ss_pred cccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CCeEEEEeCCCC
Q 009963 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 303 (521)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~lveiv~~~~t 303 (521)
||....+. +++..+.+.+.++.|+++.+++.+-+ +.++.+.. .|.||+ .|+.. .+ .+++| .
T Consensus 62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 99887664 55678888888888887654333322 33333321 366665 35443 34 34444 3
Q ss_pred cHHHHHHHHHHHHhcCCeE-------EEecC-cccc----hhhchHHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 009963 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLIDRAIT 362 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------vvv~d-~~Gf----i~nRil~~~---~~ea~~l~~--~G~~~~~ID~a~~ 362 (521)
++++++.++++++.++..+ .++++ ..|. +.|-|...+ +.|++.+++ .|++++++-+++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77875 3343 334455443 689999887 4889999988886
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=98.73 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=72.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
|||+|||+|.+|..+|.+|+.+|++|+.+|+|++.++...+.. ...+.+..+ -.++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 6999999999999999999999999999999999887754211 111111111 24677888
Q ss_pred Cccc-ccCCCEEEEecccc--------hhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 220 DYES-FKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 220 ~~~~-~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
+.+. +.+||++|.|||.. +..-.++...|.+.++++.+++ .-||+++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8765 89999999999743 3345667788889999988775 56677664
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=108.40 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=79.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P----------------------------------- 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... ..+....|.+.+..++.++++++++.+|+++|++.
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~ 294 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD 294 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 1444677888765443 34445568999999999999999999999988755
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=105.60 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P----------------------------------- 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+... ...|.+.+..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 13446777777654332111 1235678888999999999999999988654
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=105.06 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~--~~---------------------------------- 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAH--AP---------------------------------- 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|+++|+++
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1344567777765433 34556678889999999999999999987654
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-10 Score=103.56 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
=|++|||.|+++||+|+++.|+||-+||| .+|.+|+|||||||++.|.+|=
T Consensus 201 FIVNRlLiPyl~ea~r~yerGdAskeDID--taMklGagyPMGPfEL~DyvGL 251 (298)
T KOG2304|consen 201 FIVNRLLIPYLMEAIRMYERGDASKEDID--TAMKLGAGYPMGPFELADYVGL 251 (298)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCcHhhHH--HHHhccCCCCCChHHHHHHhhH
Confidence 49999999999999999999999999999 9999999999999999999983
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=104.29 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=77.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.+++++++.. |+
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAK--PP---------------------------------- 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|++++... .++.+.+..|.+.+..++.++++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 13446778887653 468888999999999999999999999999863
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-09 Score=87.74 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=67.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988764321 11 111111334667
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+++|+||.|||.. .-.+++.++ ....++.+++|.++
T Consensus 60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence 8999999999765 346788888 66678888888764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-08 Score=103.02 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=126.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..++.+++++ .-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 368999999999999999999985 78999999999988754221 11111111110 1124778888
Q ss_pred cc-cccCCCEEEEecccch-------------hhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeec
Q 009963 221 YE-SFKDVDMVIEAIIENV-------------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (521)
Q Consensus 221 ~~-~~~~aDlVIeav~e~~-------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~ 283 (521)
++ .+++||++|.|||... .--..+.++|.++++++.+++ ..||+++. .+...+....+ |.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--CC
Confidence 75 5899999999996332 244567788889999888765 45565553 33332211100 22
Q ss_pred cc---ccccCCC---------CeEEEE-eCC--CCcHHHHHHHHHHHHhcCC-eEEEecCc--c---cchhhchH---HH
Q 009963 284 HF---FSPAHVM---------PLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T---GFAVNRMF---FP 339 (521)
Q Consensus 284 hf---~~P~~~~---------~lveiv-~~~--~t~~e~~~~~~~l~~~lGk-~~vvv~d~--~---Gfi~nRil---~~ 339 (521)
.| ++|-... ..--|| .+. ...+++.+.+.++...+-+ .++.+.+. . -++.|-.. .+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 22 2443221 112243 443 1225577888888887742 45555431 1 12344332 36
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++||-..+.+ .|+++.+|-.++.
T Consensus 229 f~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 7899888775 5999999888886
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-09 Score=104.54 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=82.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|++|+++||||+|+|++++.+.+.+++++++.. |.
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAK--PP---------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcC--CH----------------------------------
Confidence 468999999999999999999999999999999999999886 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|+.++........+.+..|.+.|..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 134468888888888889999999999999999999999999999986
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=101.65 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=108.8
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (521)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.-. . .. .+. .. .....++..+++.+ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~-~-----~~-~l~-~~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHR-N-----SR-YLG-ND-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCC-C-----cc-cCC-CC-cccCCCeEEECCHHHH
Confidence 34579999999999999999999999 79999999987765432100 0 00 000 00 01112455566664 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH------H-HHHHhhcCCCce-eecccccccC---CC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRI-VGAHFFSPAH---VM 292 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i------~-~ia~~~~~~~r~-ig~hf~~P~~---~~ 292 (521)
+.++|+||.|||.. .-+.+++++.+.++++++++|.+.++.. + .+.+.++. .++ +-..|..+.+ ..
T Consensus 75 ~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 78999999999854 3567889999989888877777767764 2 34444432 121 1111211111 22
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccch
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA 332 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi 332 (521)
+...++... +++..+.+.+++..-+..+....|..|..
T Consensus 152 ~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve 189 (341)
T PRK12439 152 AAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVE 189 (341)
T ss_pred CeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHH
Confidence 322333332 56778888888888887777777765543
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-09 Score=105.66 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 578999999999999999999999999999999999998873112
Q ss_pred chHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++...... ..+....|.+.+..++.++++++++.+|+++|++..
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f 275 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence 14446788887764221 223446688899999999999999999999887654
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-09 Score=104.49 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=79.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|| ++++++|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R----------------------------------- 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 679999999999998852 2
Q ss_pred chHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|+.++.... .++++++..|.+.+..++.|+++++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 245578889988777 789999999999999999999999999999863
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-09 Score=103.46 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=80.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+||+ ++.+.+.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~----------------------------------- 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-P----------------------------------- 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999995 37889999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1445678888888778899999999999999999999999999999987643
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-09 Score=89.20 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=72.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
-.||+|||+|.+|..++..|.++|++|..+ .++++..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 469999999999999999999999998665 67776666543211 1111122235578
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhh--CCCCceEEecCCcCcHHHHHHhhcCCCceeeccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf 285 (521)
++|+||.+||++ .-..+.++|... ..++.|++=.+-+++.+-+.....+......+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999988 346888888876 6788888754445666666655555556677775
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=101.22 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||.+ +++++.|.++|++++.. |+
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~--~~---------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNG--PF---------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 4789999999999999999963 35788999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+++
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-09 Score=102.34 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=71.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAG--SQ---------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhh---CChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.... .+++..+..|. .++.|+++++++.+|++||+++
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~ 264 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPD 264 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCC
Confidence 133456777765421 23555555443 4678999999999999988654
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=99.34 Aligned_cols=94 Identities=16% Similarity=0.294 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHH-HHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+|||++++|+||+++||||+|+++. .+.+.++ +++++..+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~-p---------------------------------- 194 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS-A---------------------------------- 194 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC-H----------------------------------
Confidence 57899999999999999999999754 3566676 57777642 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l-~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++++ ..|.+.+..++.|+++++++.+|++||++.
T Consensus 195 -~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 195 -SSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred -HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 1444678888877777777776 478889999999999999999999988754
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=100.58 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=75.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++. .+.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p----------------------------------- 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-K----------------------------------- 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999987653 5777888887752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.. ..++++++..|.+.+..++.|+++++++.+|+++|++.
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 1444677887764 44688899999999999999999999999999987643
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=100.18 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=81.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||++++ ++.+.+.+++++++.. |+
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~--~~---------------------------------- 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRG--SP---------------------------------- 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999974 5899999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|+.++.....++++.++.|.+.+..++.++++++++.+|.++|++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p 256 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPP 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 245578899988888889999999999999999999999999999988754
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=102.62 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.++|..++..|+ +|+++|++++. .++.. .+.++ .+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 89999998663 33321 11111 11 01112347777888988999
Q ss_pred CCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.++. .|..+-+++.+++.++. ++++++..|
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~t 118 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVS 118 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 999999986 23345556667777775 455544333
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-09 Score=105.90 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=82.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHH-----------hhhccCCCcchhhc-------ccCCCCCchHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-----------DILEHRRPWVATLY-------KTDKIEPLGEA 62 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~-----------~l~~~~~p~~~~~~-------~~~~~~~~~~~ 62 (521)
|+|||++++|++|+++||||+|||++++.+...+++. .+...-....+... ....+... ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 5789999999999999999999999888776443331 01000000000000 00000000 00
Q ss_pred HHHHH--------HHHHHHHHh-CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hh-ccC
Q 009963 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (521)
Q Consensus 63 ~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~-~k-r~~ 131 (521)
..++. .+.+.+.+- .+++.+...+|++++.+...+++++++.|.+.+..++.++++++++++|+ +| |.+
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 00111 122233332 23566889999999998888999999999999999999999999999997 55 443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=95.26 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=98.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|. +.....+.. -....+++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4899999999999999999999999999999 66655432 1121 000000000 01112334433 48
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCcee-ecccc-----cccCC----CCe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV----MPL 294 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~i-g~hf~-----~P~~~----~~l 294 (521)
++|+||.|++... -..+++++.+.++++++|++...++.. +.+...++. .+++ |+.++ .|-.. ...
T Consensus 68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 8999999998653 356778888888888877766667654 445554432 2444 33333 22111 011
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+.+-..+....+..+.+.+++...|.......|...
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 112111223345666777888888866566556433
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=97.65 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|++ + +.+.+++++++.. |+
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~--~~---------------------------------- 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGL--AP---------------------------------- 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999975 2 3789999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.. .++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 1444678888765 5688999999999999999999999999999987654
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=97.95 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|++|+++||||+|||++++++.|.++|+++++. |+
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEK--PR---------------------------------- 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF 125 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF 125 (521)
.+...+|+.++.....+++++++.|.+.|..++.|+++++++...
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 144478899998888899999999999999999999999998764
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=92.92 Aligned_cols=171 Identities=10% Similarity=0.111 Sum_probs=102.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.+||+|||+|.||+.+|..|+++|++|+++.++.. +... +.|. +....-+.....+...++.+...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDMP 71 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhcC
Confidence 46899999999999999999999999999999853 2211 1121 00000000001122233444567
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceee-cccc-----cccC---C-CCe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MPL 294 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig-~hf~-----~P~~---~-~~l 294 (521)
.+|+||.||+... + .+++..+.+.+.+++++++...++... .+...++ +.++++ ..++ .|.. . ..-
T Consensus 72 ~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~ 148 (313)
T PRK06249 72 PCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR 148 (313)
T ss_pred CCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence 8999999998653 2 467888888888888887777777664 4554543 334443 3332 2321 1 111
Q ss_pred EEEEeCCCCc-----HHHHHHHHHHHHhcCCeEEEecCcccchh
Q 009963 295 LEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (521)
Q Consensus 295 veiv~~~~t~-----~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~ 333 (521)
+.+-.....+ .+.++.+.++++..|....+..|....+.
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W 192 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARW 192 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHH
Confidence 2222111222 45667788888988887777676555433
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=88.80 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=82.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+ |.||.-++..|.++|++|+ +.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence 48999999 9999999999999999985 136
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCC-----CeEEEEeCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN 301 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~-----~lveiv~~~ 301 (521)
||+||.|+|.+.. .++++++. .++++.+|+.. .+.+. ..+|+|.||+..+... ..+ ++..+
T Consensus 32 ~DlVilavPv~~~--~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~ 97 (197)
T PRK06444 32 ADHAFLSVPIDAA--LNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFIND 97 (197)
T ss_pred CCEEEEeCCHHHH--HHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceE-EEECC
Confidence 8999999997642 35555543 36778887764 23332 3479999998653321 222 33466
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 788888889999988 77777765
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-08 Score=97.91 Aligned_cols=98 Identities=26% Similarity=0.406 Sum_probs=75.7
Q ss_pred EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 009963 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (521)
Q Consensus 150 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (521)
|+|||+ |.||.+++..++..| .+|+++|+++++++.....+++..... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776554443322110 1235666677 688
Q ss_pred ccCCCEEEE--------------ecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 224 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+++||+||+ .+.++..+++++++++.+++ |++++...
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~ 118 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV 118 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999999 66788889999999999998 55555433
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=96.84 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCcc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++ .+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVL 68 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHH
Confidence 379999999999999999999999999999998876653321 0010 000 00112344455554 34
Q ss_pred -cCCCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCcCcH-------HHHHHhhcCCCceeeccccccc------
Q 009963 225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------ 289 (521)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l~i-------~~ia~~~~~~~r~ig~hf~~P~------ 289 (521)
.++|+||.|||... -.++++++.+ .+++++++++.++++.. +.+...+++. ++.. +..|.
T Consensus 69 ~~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~ 143 (326)
T PRK14620 69 SDNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA 143 (326)
T ss_pred hCCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence 58999999998653 4578888887 77888766666666633 2344444321 2110 00121
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchh
Q 009963 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (521)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~ 333 (521)
...+..-.+.+ .+.+....+.+++..-+.......|.-|...
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~ 185 (326)
T PRK14620 144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQI 185 (326)
T ss_pred cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhh
Confidence 11221112233 3445566666777666666666667666543
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=96.47 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=79.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+|+++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P----------------------------------- 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s---~~a~~~~~aF~~k 128 (521)
.+...+|++++.....+++++++.|...+..++.| +........|..+
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 14457889998888888999999999999999998 6777777777664
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=94.22 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=77.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||+.+|..|+++|++|++++++++.++...+ .|. .-.+- .....+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~-~~~~~-~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGL-RLEDG-EITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCC-cccCC-ceeecccCCCChhHcCCC
Confidence 47999999999999999999999999999998877655321 121 00000 001112233444445899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhc
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~ 275 (521)
|+||.|++... -..+++.+.+.+.+++++++...++.. +.+...+.
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 99999998653 367888898888888877777777764 44555443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-06 Score=87.56 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=141.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (521)
..|||||+|+||+.+|..++++|+.|.+|+|+.++.+...+. .+. ..+|.++.++++
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHHH
Confidence 579999999999999999999999999999999998876532 110 113444444443
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH---HHhhcCCCceeecccccc---cCCCCeEEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYSKDRIVGAHFFSP---AHVMPLLEI 297 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i---a~~~~~~~r~ig~hf~~P---~~~~~lvei 297 (521)
++.---|+.+|-.- .....++++|.+++.++.|+++...+.-.+.+ .+.....-.|||+----. +...| .|
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--Si 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--SI 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--Cc
Confidence 45566777777544 22357789999999999999876555433322 222233345666543211 11111 24
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCC----e--EEEec-Ccccchh----hchHH---HHHHHHHHHHHcC--CCHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKK----T--PIVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRAI 361 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk----~--~vvv~-d~~Gfi~----nRil~---~~~~ea~~l~~~G--~~~~~ID~a~ 361 (521)
+|| .++++.+.+.+++..+.. . ..+++ +..|.++ |-|=. .++.|+..++.++ .|.++|-.++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 455 478888999998887631 2 23444 5667544 55543 4689999999875 4999999988
Q ss_pred HhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHHHHHHHC
Q 009963 362 TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQED 409 (521)
Q Consensus 362 ~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (521)
..++- |.+ |..=+++..+++..-.+. .-.|+++..++.
T Consensus 220 ~~WN~--geL---~SYLIeIT~~IL~~kD~~-----~~kplvd~ILD~ 257 (473)
T COG0362 220 EEWNK--GEL---DSYLIEITADILRKKDEE-----GGKPLVDKILDK 257 (473)
T ss_pred HHhcc--Ccc---hHHHHHHHHHHHhhcCcc-----cCCchHHHHHHH
Confidence 75432 322 222344444554432111 112567766654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=94.92 Aligned_cols=165 Identities=18% Similarity=0.093 Sum_probs=100.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
||+|||+|.||.++|..++.+| ++|.+|.+ +++..+... .. .+....-+. -....++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in----~~----~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN----TT----HENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH----hc----CCCccccCC--CcCCCCe
Confidence 6899999999999999999999 99999998 443322211 10 000000000 0123456
Q ss_pred ccccCcc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--------HH-HHhhcCCCceeeccc
Q 009963 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------LI-GERTYSKDRIVGAHF 285 (521)
Q Consensus 216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--------~i-a~~~~~~~r~ig~hf 285 (521)
..++|++ .+++||+||.|||.. .-+.++.++.++++++.+++|.+-++..+ ++ .+.+..+ +. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--CG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--eE---E
Confidence 6778874 579999999999976 45688899999888888888887665443 22 2233222 11 1
Q ss_pred ccccC-------CCCeEEEEeCCCCc--HHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 286 FSPAH-------VMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 286 ~~P~~-------~~~lveiv~~~~t~--~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.+.|+ ..|...++.+...+ .+....+++++..--..+....|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 12221 22333344443222 67778888887764445555556444
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.3e-09 Score=86.17 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
|++|++.+++|||++++++++++++||| .+++.+.|+|+|||+++|.+|-.
T Consensus 3 i~nRl~~~~~~ea~~l~~egvas~~~ID--~~~~~~~G~p~Gpf~l~D~~Gl~ 53 (97)
T PF00725_consen 3 IVNRLLAALLNEAARLVEEGVASPEDID--RAMRYGLGFPMGPFELADLVGLD 53 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSSHHHHH--HHHHHHHTHSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHhCCCCCccchHHHHhCch
Confidence 5799999999999999999999999999 98999999999999999999853
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-08 Score=92.52 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=65.5
Q ss_pred cccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCc
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (521)
.+.+|.++|+||++|||||.|||.++|++++.+||+++.+++ |.
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P~----------------------------------- 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-PT----------------------------------- 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-hH-----------------------------------
Confidence 467899999999999999999999999999999999998863 31
Q ss_pred hHHHHHHHHHHhhhCCh--HHHHH-HHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 82 HPIVCIDVVEAGVVSGP--RAGLQ-KEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 82 A~~~~~~~i~~~~~~~~--~~~l~-~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
++++++.+.+.+- -.++. ..-++-.-..+++|+++++.+|.+||.+.
T Consensus 225 ----AlR~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd 274 (282)
T COG0447 225 ----ALRMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD 274 (282)
T ss_pred ----HHHHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence 2333333333221 12222 11222223467999999999999999874
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-06 Score=80.25 Aligned_cols=187 Identities=14% Similarity=0.180 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+.||+|.||..|+..|.+.|++|+.||+|+++.+.+. +.|.......+.. ...+...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el---------~~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDEL---------VAKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHH---------HHhcCCC
Confidence 4799999999999999999999999999999999988754 2331111111111 1234555
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH--HhhcCCCceeeccccc-ccCC------CCeEEEE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG--ERTYSKDRIVGAHFFS-PAHV------MPLLEIV 298 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia--~~~~~~~r~ig~hf~~-P~~~------~~lveiv 298 (521)
-.|-.+||-. ++-.+++.++.+.+.++.++++...+.--+.+. ..+ .-.|+||+. ..+. ....-+|
T Consensus 61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~GTSGG~~G~~~G~~lMi 135 (300)
T COG1023 61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVGTSGGVWGAERGYCLMI 135 (300)
T ss_pred cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEeccCCCCchhhhcCceEEe
Confidence 7788888865 356789999999999999888765544333222 222 124889983 1111 1233355
Q ss_pred eCCCCcHHHHHHHHHHHHhcCC---eEEEecC-cccch----hhchHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk---~~vvv~d-~~Gfi----~nRil~~~---~~ea~~l~~~G---~~~~~ID~a~~ 362 (521)
.| +.++++.+..+|+.+-- --.+++. ..|.+ -|-|=..+ +.|.+.++++. .+.++|-++++
T Consensus 136 GG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 136 GG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred cC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 55 78999999999998753 2345554 34543 46555544 47888888765 36777777776
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-08 Score=94.35 Aligned_cols=92 Identities=30% Similarity=0.431 Sum_probs=79.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||+.++|+||+++||||++|++ +++++.|.+++++++.. |.
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~--~~--------------------------------- 206 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAP--PL--------------------------------- 206 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccC--HH---------------------------------
Confidence 5799999999999999999999985 69999999999998761 21
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
+...+|..++.+...++++.+..|...+...+.++++++++.+|.+ |+
T Consensus 207 --a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~ 254 (257)
T COG1024 207 --ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RK 254 (257)
T ss_pred --HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cC
Confidence 3446788888887667899999999999998899999999999998 44
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-08 Score=91.21 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=73.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
.||+|||+|.||+.||..|++.|+ +++++|.+ ++.+.+-... . ...|.-..+.+...+.++.+..+.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-----~--~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYK-----A--SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCC-----h--hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999999 69999999 6665541100 0 1123322333344444444333222
Q ss_pred ------------cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 223 ------------~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
.++++|+||+| .++.+.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 7999999999999988877776665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-07 Score=93.72 Aligned_cols=171 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~~~ 218 (521)
+||+|||+|.||.+||..++++| ++|.+|.++++. -.+..+.++.. ... ..+.. -....++..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEEe
Confidence 68999999999999999999998 799999999862 01111111110 000 00100 0123567777
Q ss_pred cCcc-cccCCCEEEEecccchhhHHHHHHHHHh--hCCCCceEEecCCcCc--------HHHHH-HhhcCCCceeecccc
Q 009963 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIG-ERTYSKDRIVGAHFF 286 (521)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~il~sntS~l~--------i~~ia-~~~~~~~r~ig~hf~ 286 (521)
+|++ .+++||+||.|||.. .-+++++++.+ .++++++++|.+-++. ++++. +.+..+--++.. |.
T Consensus 85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsG-Ps 161 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSG-AN 161 (365)
T ss_pred cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEEC-CC
Confidence 7874 589999999999865 45788899887 7777878887765554 33333 233222111111 11
Q ss_pred cc---cCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 287 SP---AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 287 ~P---~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.. +...|...++.+ .+.+....++++|..--..+....|..|
T Consensus 162 ~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 162 VANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred HHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 11 112343334444 3677777788887765555555556444
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-08 Score=100.98 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=78.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHH----------HhhhccC-CCcch----hh----cccCCCCCchH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPWVA----TL----YKTDKIEPLGE 61 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~l~~~~-~p~~~----~~----~~~~~~~~~~~ 61 (521)
|+|||++++|++|+++||||+|||++++.+.+.++. +++...- .++.. .. .....+... .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 578999999999999999999999988876332321 1111100 00000 00 000000000 0
Q ss_pred HHHHHHH------------HHHHHHHhC-CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q 009963 62 AREIFKF------------ARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (521)
Q Consensus 62 ~~~~~~~------------a~~~~~~~~-~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~~~aF 125 (521)
....++. +.+.++.-. +.+.+...+|++++.+...+++++++.|...+..++. ++++++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 0001111 122233322 3455888999999998888999999999888888877 99999999999
Q ss_pred H-hh
Q 009963 126 F-AQ 128 (521)
Q Consensus 126 ~-~k 128 (521)
+ +|
T Consensus 327 lidK 330 (379)
T PLN02874 327 VIDK 330 (379)
T ss_pred EEcC
Confidence 7 66
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=93.21 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=77.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||.++|..+...|++|++||++++..... +..+.++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999997542110 0112334 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+..+.+++.+.+++++++++.+-+ +.-..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999888778778888889999988755444 44456777664
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-07 Score=79.97 Aligned_cols=103 Identities=27% Similarity=0.356 Sum_probs=67.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+||+|||+ |..|+.+|..+...++ ++.++|++++.++.-...+.+.... .+ ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~---~~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP---LP----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG---ST----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh---cc----------ccccccccccccc
Confidence 58999999 9999999999999876 8999999998665533333222100 00 0112223568999
Q ss_pred cCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
++||+||.+.-. +..+-+++...+.+.. ++++++..|..
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 999999988621 2223445556677777 55565544443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-06 Score=80.45 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=114.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccchhhHHHHHHHH
Q 009963 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (521)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l 248 (521)
-++|+++++++++++...+. .| +..+.+. +.+.+||+||.||+ +..-.+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999886553211 12 1122333 44688999999998 33456778888
Q ss_pred HhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEE-EeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 249 ~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lvei-v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
...+.++.+|+|.++++++++|...++...+++.+.|+.|......+.. ..++..+++..+.+.++|..+|+...+-.+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~ 143 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEA 143 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 7767778899999999999999988865457999999988877655554 467778888899999999999976654321
Q ss_pred -cccch-hhchH---HHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009963 328 -CTGFA-VNRMF---FPYTQAAF--LLVERGTDLYLIDRAIT 362 (521)
Q Consensus 328 -~~Gfi-~nRil---~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (521)
-..+. ..-.. ..++.+++ ..+..|+++++-.+...
T Consensus 144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11111 11111 11233333 34567888888777765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=80.87 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=101.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|+|+|.||+-++..|+++|.+|+++-+++. +++.. +.|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988888888875 55432 22321100000011112223334567799
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH-HHHhhcCCCceeecccccccCCC---------CeEEE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFSPAHVM---------PLLEI 297 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~-ia~~~~~~~r~ig~hf~~P~~~~---------~lvei 297 (521)
|+||.++-.- --.+++..+.+.++++++|.+.-.++...+ +....+...-+.|+-+..-.... .-+.+
T Consensus 69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 9999998533 346788999999999998887777776554 55544333234444443211111 11222
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
-......++..+.+.+.++..|....+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 222223346778888888777766655544
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-07 Score=83.81 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=82.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCc----hHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (521)
+|+|||.+++.||.++||||.||... .....|+++|+++.... |
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-P------------------------------- 235 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-P------------------------------- 235 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-c-------------------------------
Confidence 58999999999999999999999765 45556777777765532 2
Q ss_pred CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
-|+..+|-+|+.+.+.++..++.+|..-+.+...+.+--+++.+|.+||.+.-
T Consensus 236 ----iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 236 ----IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred ----hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 25667889999999999999999999999999999999999999999987653
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-07 Score=80.72 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||.||+++||+..|||.+|||+++|..++.+++..+-..++. .+.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra-------------------v~s------------- 235 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA-------------------VIS------------- 235 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-------------------HHH-------------
Confidence 689999999999999999999999999999999998877553211 011
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.-|+-.+....++-.+++....+...+-+.-.+++++|.+||+||.+.
T Consensus 236 ----lgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 236 ----LGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 234555555566667777777778888888899999999999988653
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.8e-07 Score=89.23 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..|+..| .+|+++|++++.++.....+.+.... .+. ...+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 58999999998876544333222100 000 00122 35677899
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.++.. +..+-+++...+.++++ ++++...|
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs 117 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS 117 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 99999999843 22344556667777765 55554333
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-07 Score=89.34 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=67.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P----------------------------------- 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHh-CCHH
Q 009963 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~-~s~~ 117 (521)
.+...+|+.++..... ++++++..|...+.... ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 1444678888877665 68999999988888877 5665
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-05 Score=72.81 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccch
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~ 238 (521)
|+.+|..|+.+||+|++.|.|.+-.+.. .+++..+.|. -..++|.++++.+.+.|.-.|=..
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV------------~vv~dD~eaa~~~Ei~VLFTPFGk 94 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV------------EVVSDDAEAAEHGEIHVLFTPFGK 94 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc------------EEecCchhhhhcceEEEEecccch
Confidence 7899999999999999999998765542 1222223331 112445678899999998877542
Q ss_pred hhHHHHHHHHHhhCCCCceEEecCCcCcHH----HHHHhhcCCCceeecccccccCC-----CCeEEEEeCC------CC
Q 009963 239 SLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV-----MPLLEIVRTN------QT 303 (521)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~il~sntS~l~i~----~ia~~~~~~~r~ig~hf~~P~~~-----~~lveiv~~~------~t 303 (521)
. --.+.++|.++++++++|+ ||.|.|+- .+...+..+.+-+|...|.|+.+ .... ++.+. -.
T Consensus 95 ~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~elA 171 (340)
T COG4007 95 A-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKELA 171 (340)
T ss_pred h-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceeec
Confidence 1 2356778899999999886 55555543 33444555556677777766532 1122 23322 23
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+++.++.+.++++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 57889999999999999999886
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=89.58 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=54.5
Q ss_pred eEEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-
Q 009963 148 KKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (521)
+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...+++.+... + ...++..++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 69999999999966655 333 246799999999999886554444433221 1 1236777888
Q ss_pred cccccCCCEEEEecc
Q 009963 221 YESFKDVDMVIEAII 235 (521)
Q Consensus 221 ~~~~~~aDlVIeav~ 235 (521)
.+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 578999999999973
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=85.22 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=70.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+++.+++++++.. |.
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~---------------------------------- 228 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN---------------------------------- 228 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence 578999999999999999999999999999999999998864 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCC-HHHHHHHHHHHh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS-ETCKSLVHIFFA 127 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s-~~a~~~~~aF~~ 127 (521)
++.++|+..+.....++++.++.|..++..++++ +..++-+..|..
T Consensus 229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 2334555555555567889999998888876654 455666777753
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=86.55 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=65.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|||+|.+|+++|..++..|. ++.|+|++++.++.-...+.+.. ... ....+..+.++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 499999999999999999998886 79999999876554332222110 000 012455567899999
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+||+||.+.-. +..+-+++...+.++++ ++++.
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence 99999986521 11234455566777754 44443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-06 Score=83.09 Aligned_cols=175 Identities=14% Similarity=0.030 Sum_probs=100.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||+-+|..|+++|++|++++++.+.++...+ +.|. +.... ....-.+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 58999999999999999999999999999998877665331 0111 10000 00000111 111233568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceeecccc-----cccCC--CCeEEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFF-----SPAHV--MPLLEIV 298 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig~hf~-----~P~~~--~~lveiv 298 (521)
+|+||.|+-.. ++ .+.++.+.+.+.+++++++.-.++... .+...+....-+.|..++ .|-.. ...-.+.
T Consensus 71 ~D~viv~vK~~-~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 71 IHRLLLACKAY-DA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred cCEEEEECCHH-hH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence 99999999543 23 366788999999999888888787664 455555432223333332 33211 0011111
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 337 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil 337 (521)
-|.. +.+..+.+.+++...|....+..|..+.+.+.++
T Consensus 149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 186 (305)
T PRK05708 149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLA 186 (305)
T ss_pred EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 2222 1233456666777767655555555555444443
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.5e-06 Score=84.65 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=74.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|..||+++..... . ..| ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence 69999999999999999999999999999998643211 0 011 011 233 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|. ++-..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999988877666677778899999886 4543 33456666663
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=77.99 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=72.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||+|.||.+++..|...| .+|+++|++++..+...+.+.. .+ + .....+..+.+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 58999999999999999999986 7899999999877654322110 00 0 0011111233789
Q ss_pred CCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc-CCCceeecccc
Q 009963 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~-~~~r~ig~hf~ 286 (521)
+|+||.|+|.... +....+. ...+++++++++.++....+.+..... +..+++..|.+
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~ 141 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM 141 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence 9999999988753 2112221 123577888776655433334544432 23345544443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.2e-07 Score=86.33 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=60.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++.+.|.+++++++..+ |
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-M----------------------------------- 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (521)
.+...+|+.++.....+++++++.|.+.|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 24446788888877777888888887665
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-07 Score=90.67 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 463 TLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 463 ~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
+...|.+|++.+++|||++|+++|+++++||| .++++|.|||+|||+++|.+|-.
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD--~~~~~g~g~p~Gp~~~~D~~Gl~ 238 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVATAEDID--EGMKLGCNHPIGPLALADLIGLD 238 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 45689999999999999999999999999999 88889999999999999999854
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-07 Score=91.10 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=68.4
Q ss_pred cchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 403 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l 403 (521)
--++++++.+++|||+++++||+ +++++|-+.. |+|||. |||.|.|..|++.++..++.+.. +.|+.++
T Consensus 294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l 368 (380)
T KOG1683|consen 294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLL 368 (380)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHH
Confidence 45899999999999999999997 9999999988 999994 99999999999999999988765 6788888
Q ss_pred HHHHHCC
Q 009963 404 PIMQEDK 410 (521)
Q Consensus 404 ~~~~~~G 410 (521)
..+..+|
T Consensus 369 ~~~a~~~ 375 (380)
T KOG1683|consen 369 KDHAKSG 375 (380)
T ss_pred HHHHhhh
Confidence 8887763
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.3e-06 Score=83.35 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=86.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..|. ... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EEC-CHHHHHhc
Confidence 6899999999999999999999999999987643322211 1121 111 33 55789
Q ss_pred CCEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcCcHHHHHHhhcCCC--ceeecccccccC----------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~--r~ig~hf~~P~~----------~~~ 293 (521)
||+|+.++|. .+.+ .++ .++.+.++++++|+- +-+..|.- ..+..|. .++=.-|-.|-+ ..|
T Consensus 72 ADVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~--~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 72 AQVVQMLLPD-EQQA-HVYKAEVEENLREGQMLLF-SHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred CCEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEEE-CCCcceec--CceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 9999999996 4444 555 568888999998753 33333321 1111121 122222222222 123
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeE
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~ 322 (521)
.+.-|.-+ .+-.+.+.+..+...+|.+.
T Consensus 147 ~l~av~qd-~sg~a~~~ala~a~~iG~~r 174 (335)
T PRK13403 147 ALVAVHQD-ATGTALHVALAYAKGVGCTR 174 (335)
T ss_pred eEEEEEEC-CCCcHHHHHHHHHHHcCCCc
Confidence 22222222 33446778888888888763
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=84.11 Aligned_cols=97 Identities=28% Similarity=0.403 Sum_probs=65.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.++|..++..| .+|.++|++++.++.....+... ..... . ..+ .+.++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~----~--~~i-~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK----P--VRI-YAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC----C--eEE-eeCCHHHhC
Confidence 48999999999999999999999 58999999988765322111110 00000 0 122 246788899
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il 258 (521)
+||+||.+++. +..+-+++..++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999864 2233455666777776554443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-06 Score=85.58 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=64.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (521)
+||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+.+.. ... ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999877654333322211 111 23444467889
Q ss_pred ccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+++||+||.+.-. +..+-+++...+.+++++ ++++
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivi 151 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILL 151 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence 9999999998521 112334555667776654 4443
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-06 Score=88.70 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=70.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|++|+++||||++||++++ +.+.+++.+++... |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999988 67778888876641 1
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~ 126 (521)
.+...+|+.+... ..+.+.++..|.+.+..|+.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1333566666554 23456778888999999999999999999994
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=81.04 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|..||++.+..... . ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~-----------------~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV-----------------Q---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc-----------------e---------eecccccHHHHHhc
Confidence 689999999999999999999999999999876431100 0 00011233 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
||+|+.++|.+.+.+.-+-.+....++++++++ |++ .+.-+.+.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHh
Confidence 999999999999887777677777899999886 554 345567777764
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-06 Score=84.10 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=64.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+.+|..++..|+ ++.++|++++.++.....+.+..... ....+. +.++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCCHHHhC
Confidence 499999999999999999999998 89999999887665443332221000 001233 45788999
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+||+||.+.-. +..+-+++..++.++.+ ++++.
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999987621 22234455556666654 45544
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-06 Score=88.00 Aligned_cols=52 Identities=4% Similarity=-0.221 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=|.+|++.+++|||++|+++++++++||| .++..+.|||+|||+++|.+|-.
T Consensus 191 fi~nRi~~~~~~Ea~~ll~eGv~~~~dID--~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 191 FVVNALLVPYLLSAIRMVESGFATAEDID--KAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhccH
Confidence 38999999999999999999999999999 88889999999999999999854
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-06 Score=73.72 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++. +.|. ...+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998876 333322 3342 12222366899
Q ss_pred CCEEEEecccchhhHHHHH-HHHHhhCCCCceEEe
Q 009963 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILAS 260 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~s 260 (521)
+|+|+..+|+. +-.++| ++|.+.++++..+.-
T Consensus 61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE
T ss_pred CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe
Confidence 99999999965 446777 789999999998753
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=80.54 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=73.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|..||++....+... ..| +....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 6899999999999999999999999999999763211100 011 1112234 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. +.-+.+.+++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988876555456777899999886 5543 33456666664
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-06 Score=87.65 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=+.+|++.+++|||++|+++++++++||| .+++++.|||+|||+++|.+|-.
T Consensus 186 f~~nRl~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~p~Gp~~~~D~~Gl~ 237 (288)
T PRK09260 186 FVTSRISALVGNEAFYMLQEGVATAEDID--KAIRLGLNFPMGPLELGDLVGLD 237 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhHH
Confidence 48899999999999999999999999999 88889999999999999999854
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.5e-06 Score=82.49 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=67.1
Q ss_pred EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
|+|||+|.+|+.+|..++..| .+++++|++++.++....++.+..... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999987765443333221100 01234445568899999
Q ss_pred CEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 228 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
|+||.++.. +..+-+++...+.+++ |+++++..|
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 999998742 2224455666788877 555554333
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-06 Score=84.19 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=39.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+|||++++|+||+++||||+|||++++.+.+.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999885
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-06 Score=87.56 Aligned_cols=54 Identities=6% Similarity=-0.199 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 464 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 464 ~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
..-|.+|++.+++|||++++++|+++++||| .++..++|||+|||+++|.+|-.
T Consensus 188 pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD--~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALWAKGVADPETID--KTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCcCHHHHHHHhchH
Confidence 3579999999999999999999999999999 88889999999999999999854
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-06 Score=87.22 Aligned_cols=51 Identities=6% Similarity=-0.161 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
=|.+|++.++.|||++++++|++++++|| ..|..+.|||||||++.|.+|-
T Consensus 187 Fi~NRil~~~~~eA~~l~~eGva~~e~ID--~~~~~~~G~pmGpf~l~D~~Gl 237 (307)
T COG1250 187 FIVNRLLAALLNEAIRLLEEGVATPEEID--AAMRQGLGLPMGPFELADLIGL 237 (307)
T ss_pred eehHhHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhccCCCccHHHHHHHHhH
Confidence 48999999999999999999999999999 9899999999999999999984
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=75.29 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=109.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|++||+|.|...|+..+..+|+ ++..+-.+......- ....| .-...++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcCC------------ceeeechHHH
Confidence 479999999999999999999986 444444322221110 01112 1122334566
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~~ 302 (521)
++.+|+++.++- +.+-..++.++...+..+.|+.|...+.+++.+...+..+.|++...++.|..+..... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999983 44455666666655566779999999999999999888778999999999988776666 446777
Q ss_pred CcHHHHHHHHHHHHhcCCeE
Q 009963 303 TSPQVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (521)
...+..+.+.+++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 77888899999999999743
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-05 Score=79.39 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 011 11223443 4689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-+++...++++++|+ |++. +.-+.+.+.+.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACS 306 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988877666567888899999886 5553 33456766664
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=7e-06 Score=83.87 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=68.7
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||+|.||..+|..++ ..|.+|+.||++...... .+ +....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 58999999999999999984 458899999988643210 00 1122344 3478
Q ss_pred CCCEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
+||+|+.++|.....+. ++ .++.+.++++++|+..+.+. .-..+...+.
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999998876653 43 45667789999886444333 3345656553
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-06 Score=86.40 Aligned_cols=52 Identities=6% Similarity=-0.123 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=+.+|++.+++|||++++++|+++++||| ..++.++|||+|||+|+|.+|-.
T Consensus 190 fv~nRl~~~~~~ea~~~~~~g~a~~~~iD--~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 190 FFTTRFIEGWLLEAIRSFEIGIATIKDID--EMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred eeHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhhcCCCccCHHHHHHHhhHH
Confidence 37899999999999999999999999999 88888999999999999999854
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=78.34 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=82.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++... .+. . . ...++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~---------~--~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S---------S--IYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c---------c--ccCCHHHHHhh
Confidence 68999999999999999887779999999987421 010 0 0 01233 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc---CCCCeEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEI 297 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~---~~~~lvei 297 (521)
||+|+.++|-+.+.+.-+-++....++++++++ |+|. +.-.++.+.+.. .....++--| .|. +..+-+.+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999988876655566777789999886 5554 344567666643 2333444333 232 23455666
Q ss_pred EeC
Q 009963 298 VRT 300 (521)
Q Consensus 298 v~~ 300 (521)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 676
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=80.69 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=76.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|+|+ |..|..++..++..|+ +|+++|+++ +.++.....+. +.+...+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 58999998 9999999999999987 499999965 44333222221 1111111 012455566788
Q ss_pred cccCCCEEEEecc--c----c-h-------hhHHHHHHHHHhhCCCCceEEecCCcCcHHH--HHHhhcC-CCceeec
Q 009963 223 SFKDVDMVIEAII--E----N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (521)
Q Consensus 223 ~~~~aDlVIeav~--e----~-~-------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~--ia~~~~~-~~r~ig~ 283 (521)
++++||+||.++. . + . .+-+++...+.+.++ ++++..+++..++-. +....+. +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999984 1 1 1 234455556777664 666666777665532 2222222 3566665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.1e-05 Score=77.58 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=78.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (521)
++|||||+|.+|+.+|..+..-|.+|..||+ ........ .+ .....+++ .++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence 6899999999999999999999999999999 43322210 01 11223453 478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcCC-Cceeecccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYSK-DRIVGAHFF 286 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~~-~r~ig~hf~ 286 (521)
.||+|+..+|...+.+.-+=++....++++++|+ |+|- +.-..+.+++... -+-.++-.|
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf 260 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVF 260 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence 9999999999998865555456667789999775 7763 4556777777432 232444444
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=79.82 Aligned_cols=103 Identities=28% Similarity=0.382 Sum_probs=65.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++..++ ++.++|++++.++.-...+.+... ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987764 899999996554432211111100 000112333334589999
Q ss_pred CCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++|+||.+. | .|..+.+++-+++.+.++ +.++...|.
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtN 119 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTN 119 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecC
Confidence 999999886 3 233355566667777776 555443343
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-06 Score=84.89 Aligned_cols=54 Identities=13% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 464 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 464 ~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
...|.+|++.+++|||++|+++++++++||| .+++++.|||+|||+++|.+|-.
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~~~Gp~~~~D~~Gl~ 239 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVASKEDID--TGMKLGTNHPMGPLHLADFIGLD 239 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCCCHHHHHHHhchH
Confidence 3579999999999999999999999999999 88889999999999999999853
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.2e-05 Score=68.13 Aligned_cols=113 Identities=23% Similarity=0.235 Sum_probs=72.4
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCc-ccccCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDV 227 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (521)
|+|+|+|.||.-+|..|.++|++|+++++++ .++... +.|. ++..+-+..........+. +....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 655422 1121 1000000000000001111 246789
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 276 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~ 276 (521)
|+||.|+.... + ..++..+.+.+.+++.+++...++... .+.+..+.
T Consensus 69 D~viv~vKa~~-~-~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 69 DLVIVAVKAYQ-L-EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp SEEEE-SSGGG-H-HHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred cEEEEEecccc-h-HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 99999996543 2 467888999999998777777777754 44444433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=71.17 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=102.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 224 (521)
-.+|||||.|.||.=+|..+.++|+.|...||++ -+.+.+++ ..+.. +++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~f---------------t~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAKF---------------TLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------ccccc---------------ccHHHHHh
Confidence 3689999999999999999999999999999987 22222111 11111 11211 2
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCcH--HHHHHhhcCCCceeecccccccC-C------CCe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-V------MPL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i--~~ia~~~~~~~r~ig~hf~~P~~-~------~~l 294 (521)
...|+|+.|+.-- . -.++++..-.. ++.++|++..+|..-. +....-++..-.++..|++..+. . .|+
T Consensus 107 rhpDvvLlctsil-s-iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTSIL-S-IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEehhh-h-HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 5689999998422 2 23444444333 5678999999987533 34455666667789999985443 2 256
Q ss_pred EEEE---eCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 295 veiv---~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
|-+- ......++..+.+.+++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 5442 1223458899999999999998888764
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-06 Score=83.75 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=|.+|++.+++|||++++++|+++++||| .+++++.|||+|||+++|.+|-.
T Consensus 188 ~i~nRl~~~~~~ea~~~~~~g~~~~~~iD--~~~~~g~g~~~GP~~~~D~~Gl~ 239 (292)
T PRK07530 188 FIVNRILLPMINEAIYTLYEGVGSVEAID--TAMKLGANHPMGPLELADFIGLD 239 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 48899999999999999999999999999 88889999999999999999853
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.6e-05 Score=81.49 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=82.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||+.... +... ..| +....++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1110 111 1112244 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc-----CCCCeE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~-----~~~~lv 295 (521)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|. +.-..+.+++.. .-...++--| .|+ +..+-+
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 272 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNV 272 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCe
Confidence 999999999887765544355666789999886 5543 344677777643 2233344333 232 233445
Q ss_pred EEEeCCC
Q 009963 296 EIVRTNQ 302 (521)
Q Consensus 296 eiv~~~~ 302 (521)
.++|+-.
T Consensus 273 i~TPHia 279 (525)
T TIGR01327 273 IATPHLG 279 (525)
T ss_pred EECCCcc
Confidence 5666543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=78.69 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=51.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
||+|||+|.+|+.+|..++..|. ++.++|++++.++.-...+.+.. .+.. ....++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~-------~~~~----~~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT-------ALTY----STNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh-------ccCC----CCCEEEE-ECCHHHhCC
Confidence 79999999999999999999887 79999999876554332222110 0000 0001233 457899999
Q ss_pred CCEEEEec
Q 009963 227 VDMVIEAI 234 (521)
Q Consensus 227 aDlVIeav 234 (521)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999886
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.4e-05 Score=79.45 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=66.0
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (521)
..||+|||+ |.+|+.+|..++..|+ ++.|+|++++ .++.-...+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 369999998 9999999999988765 7999999653 23221111111100 0111 2
Q ss_pred cccccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 215 i~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+. +.+++++++||+||.+.- .+..+-+++..++.++.++++++...|...
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 22 456899999999998752 112244556667788777777776555433
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.5e-05 Score=76.30 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=77.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 0000000000000011234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcCC-Cceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~~-~r~ig~hf~ 286 (521)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ ++-+.+.+.+... -...++-.|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 99999999988876555545677788999988643322 4556777777432 223444444
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.5e-05 Score=77.61 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (521)
.-||+|||+ |.+|+.+|..++.. |+ +++++|++++.++.-.-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 369999999 99999999999988 66 899999999987654333322210 1112233
Q ss_pred -cccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+++++++||+||.+.- .+..+-+++...|.++..++++++..|.
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 3467899999999998751 1122344455567765567777665543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.88 E-value=5e-05 Score=70.19 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=61.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc---
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--- 221 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 221 (521)
||.|||+|.||+.++..|++.|+ +++++|.+. +.+.+-.- ... +-|+-..+.+...+.++.+..+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999 599999986 43332110 001 12222222333333333222111
Q ss_pred ----------ccccCCCEEEEecccchhhHHHHHHHHHhh
Q 009963 222 ----------ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (521)
Q Consensus 222 ----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~ 251 (521)
+.++++|+||+| .++.+.|..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 236889999999 67888888787776665
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.5e-05 Score=67.64 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=61.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++.|+|.|..|.++|+.|...|..|+++|+||-.+-++. ..| +...+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5799999999999999999999999999999996654432 122 2222222568899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~ 272 (521)
|++|.+.-...-+..+-| +.+++++|+++.++. +++..+.+
T Consensus 80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeeccccc
Confidence 999998765443333433 357899999877653 45555544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=73.32 Aligned_cols=104 Identities=21% Similarity=0.196 Sum_probs=70.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ . ...++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcch
Confidence 6899999999999999999999999999999987544110 011 1 12244 34688
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS 276 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~ 276 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+..+-+ ++-+++.+.+..
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 99999999977665444445566778999988744333 444567777643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=80.08 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=83.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++... +... ..| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985421 1100 111 1112 33 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc-----CCCCeE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~-----~~~~lv 295 (521)
||+|+.++|-..+.+.-+-.+..+.++++++++ |+|. +.-..+.+.+.. .-.-.++--| .|. +..+-+
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 273 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNV 273 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCe
Confidence 999999999888765554466777889999886 4443 344577776643 2223444434 232 234455
Q ss_pred EEEeCCC
Q 009963 296 EIVRTNQ 302 (521)
Q Consensus 296 eiv~~~~ 302 (521)
.+.|+-.
T Consensus 274 ilTPHia 280 (526)
T PRK13581 274 VVTPHLG 280 (526)
T ss_pred eEcCccc
Confidence 5666543
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.9e-05 Score=77.80 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=66.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (521)
-||+|||+ |.+|+++|..++..|+ +++|+|+++ +.++.-...+.+.. . .... .+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence 58999998 9999999999998885 799999965 32332111111110 0 0001 22
Q ss_pred ccccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
. +.+++++++||+||.+.- .+..+-+++..++.+++++++++...|..+
T Consensus 70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 2 456899999999998751 112244556667888887677776555333
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.5e-05 Score=75.19 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=39.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|++|+++||||+|+|++++++.|.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999885
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.9e-05 Score=75.41 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..|...|.+|++++++++.++... +.|. . .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654421 1121 0 000 1122 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+|+||.++|...- . .+..+.+++++++.+.+|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999986531 1 233345677887765554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.2e-05 Score=78.48 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=64.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (521)
.||+|||+ |.+|+++|..++..|+ ++.|+|++++. +..-...+.+. . + .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~-~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC--------A-F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhc--------c-c-----cccCceEE
Confidence 59999999 9999999999998886 79999996532 22211111100 0 0 0011 23
Q ss_pred ccccCcccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 216 TGVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
. +.+++++++||+||.+.-. +..+-+++..++.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3 4568999999999987511 12244556667788876677665554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.2e-05 Score=74.95 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=62.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-C--
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (521)
+||+|||+ |.+|+++|..++..|+ ++.++|++ .++.-.-.+. .+. ....+..+ . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2211111111 010 01134432 3 2
Q ss_pred cccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 221 ~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
++++++||+||.+.- .+..+-+++...+.++. |++++...|...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 799999999998751 22224445555677764 566665444433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=73.91 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-c------EEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-P------VILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-~------V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (521)
-||+|||+ |.+|+++|..++..|+ . +.|+ |++++.++.-.-.+.+... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 2 4445 8888876553333322110 1112233
Q ss_pred cccCcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 ~~~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+++++++||+||.+. |- +..+-+++...|.++.++++++...|.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 245789999999999875 11 222345555667777778887665543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=73.23 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=108.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
++|+|||.|..|..-|..+...|++|+ .+|.+.+.-+++. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 699999999999999999999999998 3343333333321 2221 112223
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC----------C
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~----------~ 291 (521)
+.++.||+|+..+|.. . ...++.++.+.++++++|.-. -+..|..-.-..+....++-+-|-.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fs-HGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYS-HGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEec-CCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999987 3 778889999999999988532 2333332211111112333333333322 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCeE---EEec---C-cccchhhc-hHHHHH---HHHH--HHHHcCCCHHHH
Q 009963 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKTP---IVVG---N-CTGFAVNR-MFFPYT---QAAF--LLVERGTDLYLI 357 (521)
Q Consensus 292 ~~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~---vvv~---d-~~Gfi~nR-il~~~~---~ea~--~l~~~G~~~~~I 357 (521)
.| ++.|-+-...+-...+.+..+...+|... +... + ....+..| +|+..+ .+++ .|+++|.+|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 23 33333223445567888899999998762 2221 1 12344444 333332 2333 577899988765
Q ss_pred H
Q 009963 358 D 358 (521)
Q Consensus 358 D 358 (521)
-
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=72.40 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=105.7
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhC--C-----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILS--N-----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~--G-----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
+...||+|||.|+||+.||..+..+ + .+|.+|-..++.-.. .+.+.+.+....+.-+.-++ .....++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3457999999999999999988764 2 268888766543332 11121111111111000000 123346677
Q ss_pred ccCc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH----------H-HHHHhhcCCCceee-cc
Q 009963 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRIVG-AH 284 (521)
Q Consensus 218 ~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i----------~-~ia~~~~~~~r~ig-~h 284 (521)
++|+ +++.++|++|.+||-. .-..++++|..++++++..+|.+-++.. + .|...++-|-.+++ ..
T Consensus 96 v~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaN 173 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGAN 173 (372)
T ss_pred cchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCc
Confidence 7776 5688999999999976 4568999999999999988887655442 2 23344444433322 22
Q ss_pred cccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 285 FFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 285 f~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+-+-+......|-+-+...+.+.-..+..+|+.--..++++.|..|
T Consensus 174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 2111112233343333322333333577788887777777777554
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.3e-05 Score=75.91 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=62.5
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 009963 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (521)
||+|||+ |.+|+.+|..++..|+ ++.++|+++ ....+. .+ ..+. ...++.. + .+ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DL--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hh--------hcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 211110 11 0110 0123433 2 23 7
Q ss_pred ccccCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 222 ~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+++++||+||.+. ..+..+-+++...+.++. |++++...|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 8999999999875 223334555566677774 566665444444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=73.10 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=76.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+.....+ .+ +. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 00 1234 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhcC-CCceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYS-KDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~~-~~r~ig~hf~ 286 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+| .++-+.+.+.+.. +-. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999888765555456667889999986 555 3455677777743 233 555555
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00042 Score=70.44 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=71.9
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|||||.|.+|..+|..+. .-|.+|..||+....-... ..+ +.. .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 68999999999999999986 6788999999864211100 001 111 234 3478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
+||+|+.++|-+.+.+.-+=++....++++++|+ |++ -+.-+.+.+++.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888765555456777889999886 565 345567777774
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.2e-05 Score=74.83 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=55.6
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.| .||..||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986543211 23568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|++....++..+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998765554333 78899887654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=73.17 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=61.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (521)
.||+|||+ |.+|+.+|..++..++ ++.++|+++ ....+. .+.+ . .. ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~~--------~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVSH--------I-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhhh--------C-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 111000 0000 0 00 012221 223
Q ss_pred cccccCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 221 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++++++||+||.+. +.+..+-++++..+.++. +++++...|.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSN 136 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISN 136 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 57899999999875 233445556667777776 5555543333
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.3e-05 Score=79.34 Aligned_cols=52 Identities=6% Similarity=-0.157 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHh
Q 009963 465 RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELAR 518 (521)
Q Consensus 465 ~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~ 518 (521)
-=|.+|++.+++|||++++++|++|++||| ..+++|.|++ +|||+++|.+|-
T Consensus 188 GFi~NRl~~a~~~EA~~lv~eGvas~edID--~a~~~g~g~r~~~~Gpf~~~Dl~Gl 242 (321)
T PRK07066 188 GFIADRLLEALWREALHLVNEGVATTGEID--DAIRFGAGIRWSFMGTFLTYTLAGG 242 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHhhhcCh
Confidence 359999999999999999999999999999 8888899987 899999998764
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=68.50 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=75.8
Q ss_pred cccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
.+|+|.++|.||++.|||.+|+|+ ++|++.++.+|..++.++ |.
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-pv---------------------------------- 236 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-PV---------------------------------- 236 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-ce----------------------------------
Confidence 579999999999999999999985 679999999999988763 43
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
|+.-+|+.+..+.+++.+++|.+-..+-...+.|++......+-+.+++
T Consensus 237 -aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k 285 (292)
T KOG1681|consen 237 -AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLK 285 (292)
T ss_pred -eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4446788888899999999999877777666778877777776666443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=71.23 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=71.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+.... .. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------~~-------------~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------PD-------------RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------cc-------------ccCHHHHHHh
Confidence 68999999999999999998889999999986321 00 00 1134 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+| .++-+.+.+++.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888765555566777889999886 555 345567777774
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00044 Score=68.60 Aligned_cols=70 Identities=24% Similarity=0.208 Sum_probs=49.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||||||+|.||..++..+.+. +++|. ++|+++++.+...+ +.|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence 47999999999999999999863 77775 88999887654321 1111 011233433
Q ss_pred -ccCCCEEEEecccch
Q 009963 224 -FKDVDMVIEAIIENV 238 (521)
Q Consensus 224 -~~~aDlVIeav~e~~ 238 (521)
+.++|+|++|+|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 578999999999764
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=68.50 Aligned_cols=104 Identities=27% Similarity=0.331 Sum_probs=61.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---- 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 219 (521)
.+|.|||+|.+|+.+|..|++.|+ +++++|.+ .+.+.+- . .+.. .-|.-..+.+...+.++.+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---~--~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ---Q--YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccccc---E--eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999998 59999998 3333221 0 0000 112111112222222221111
Q ss_pred --------Cc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 220 --------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 220 --------~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+. +.++++|+||+|+ ++.+.+..+............|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 3367899999994 677777777766655433333443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=70.66 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||.|||+|.+|..++..+...|.+|+++|+++++.+.+. +.|. + .+ ...++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~---------~~-~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S---------PF-HLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e---------ee-cHHHHHHHhCC
Confidence 5899999999999999999999999999999987654422 1121 0 00 00122 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+|+||.++|... +-++..+.+++++++++..|.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998532 223344557788888766553
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.3e-05 Score=75.55 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=62.5
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhc--cc
Q 009963 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LL 215 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i 215 (521)
||+|||+ |.+|+.+|..++..|+ ++.++|+++ +.++.-...+. +.. .... .+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQ---------------DCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehh---------------hhcccccCCcEE
Confidence 8999999 9999999999998764 499999987 53322111111 000 0011 12
Q ss_pred ccccCcccccCCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 216 TGVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
. +.+++++++||+||.+. | .+..+-+++..++.++++++++++..|
T Consensus 67 ~-~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 67 T-TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 34678999999999875 1 122345556667777765677665554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=71.88 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.5
Q ss_pred ccceEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 009963 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN 179 (521)
Q Consensus 145 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~ 179 (521)
.+++||+|||+ |.+|+.+|..++..+ .++.++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 35789999999 999999999998665 589999993
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=73.66 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=61.9
Q ss_pred EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009963 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (521)
|||+|.+|+.+|..++..++ ++.++|++++.++.-...+.+..... + ....+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~---------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P---------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C---------CCeEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999876654333322211000 0 001233 356899999999
Q ss_pred EEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 230 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||.+.-. +..+-+++...+.++. +++++...|
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9987622 2223445556677764 556554443
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0036 Score=62.34 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=122.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
+...|+.||++.||..++...+.+|+.|.+|+|+..+.+....+-. +| ..|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHH
Confidence 3568999999999999999999999999999999999887654321 11 11223334433
Q ss_pred --ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC--CcCcHH-HHHHhhcCCCceeeccccc---ccCCCCeE
Q 009963 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLN-LIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (521)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~l~i~-~ia~~~~~~~r~ig~hf~~---P~~~~~lv 295 (521)
++..-.||..|.....+ ..++++|.+++.++.||++.. +..+.. ...+.....--|+|+.--. .+...|
T Consensus 66 ~klk~PR~iillvkAG~pV-D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAPV-DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCcH-HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 45667777777544333 467788999999888887643 322222 2222223333466654421 111111
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcC-------CeEEEecC-cccchh----hchHH---HHHHHHHHHHHc--CCCHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIK-------KTPIVVGN-CTGFAV----NRMFF---PYTQAAFLLVER--GTDLYLID 358 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lG-------k~~vvv~d-~~Gfi~----nRil~---~~~~ea~~l~~~--G~~~~~ID 358 (521)
.++|| .++++-..++++++.+- ....++++ ..|.++ |-|-. .++.||..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 23455 47778888888877652 12345564 455443 44432 468999998875 56888888
Q ss_pred HHHHhc
Q 009963 359 RAITKF 364 (521)
Q Consensus 359 ~a~~~~ 364 (521)
.++..+
T Consensus 221 ~vF~~W 226 (487)
T KOG2653|consen 221 EVFDDW 226 (487)
T ss_pred HHHHhh
Confidence 887743
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=72.37 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 009963 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (521)
||+|||+ |.+|+.+|..++..|+ ++.|+|++++. ++.-...+ .+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl---------------~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL---------------MDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeeh---------------hcccchhcCceec
Confidence 6899999 9999999999998664 59999996542 21110011 0111 11122333
Q ss_pred c-cCcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 218 V-LDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 218 ~-~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+ .+++++++||+||.+. |. +..+-+++..++.+++++++++...|.
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 3 3478999999999875 11 112344555667777667777665553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=75.67 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
++|||||.|.||..+|..+...|++|.+||+.....+ +. .. ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999997543211 00 00 12343 3689
Q ss_pred CCEEEEecccchh---hHHHHH-HHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+ --..++ ++....++++++|+ |+|. +.-..+.+.+.
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALL 222 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 9999999997652 112333 34556789999886 5553 34456666653
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=67.62 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=79.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++.|++++|+||...|||+++++++.+.+.++.-+++++.- |+
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~p---------------------------------- 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--SP---------------------------------- 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--CH----------------------------------
Confidence 578999999999999999999999999999999999988773 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr 129 (521)
+.....|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 2344578888887777888899999999999999999999999988754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=63.39 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
-++|.|||+|-||.+++..|...|.. |++++|+.++++...+.+ ....+ .+....+. +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 36899999999999999999999986 999999999877643321 00000 01111222 346
Q ss_pred cCCCEEEEecccchh
Q 009963 225 KDVDMVIEAIIENVS 239 (521)
Q Consensus 225 ~~aDlVIeav~e~~~ 239 (521)
.++|+||.|+|..+.
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 789999999986643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00053 Score=71.14 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=82.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh---h-cccCC-----------------CCCc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---L-YKTDK-----------------IEPL 59 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~---~-~~~~~-----------------~~~~ 59 (521)
|+|||++++|++|+++||||++||++++.+.+.+++ +++... |.... . ..... +...
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999988888777 444321 11100 0 00000 0000
Q ss_pred hHHHHHHH------------HHHHHHHH-hCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHH
Q 009963 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (521)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~~~ 123 (521)
+ ...+++ .++..... +.+.+.+...+.+.++++...++++.++.|...-..++. ++|+.++++
T Consensus 246 ~-~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 T-VEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred C-HHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0 000111 12222222 123455677788999999889999999999999999988 699999999
Q ss_pred HHHh
Q 009963 124 IFFA 127 (521)
Q Consensus 124 aF~~ 127 (521)
+-+-
T Consensus 325 A~Li 328 (381)
T PLN02988 325 AILV 328 (381)
T ss_pred HHhc
Confidence 8765
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00062 Score=67.35 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=55.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ +.+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999998876 355 5689999987655321 011 112334444
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+.++|+|++|+|.+. -.++..++.+. ..+.++.
T Consensus 59 l~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~ 91 (265)
T PRK13304 59 VEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIM 91 (265)
T ss_pred hcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEE
Confidence 478999999997543 23444443332 3444443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=75.30 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=66.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (521)
++|||||.|.||+.+|..+..-|.+|.+||+.... . +. ... ..+++. +++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------ccc-cCCHHHHHhh
Confidence 58999999999999999999999999999964321 0 00 000 123443 689
Q ss_pred CCEEEEecccchh----hHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+..+|-..+ ...-+=++....++++++++ |+|- ++-+.+.+.+.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLN 222 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHH
Confidence 9999999986543 22222244556789999886 5653 44556666663
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=70.39 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|+||+++||||+|||+ +++++.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999875
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00089 Score=67.89 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+.... .. ..+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence 68999999999999999998889999999975321 00 000 1234 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+|- ++-+.+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765444456677789999886 5552 45567777774
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=74.41 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=72.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+++... .+ ......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 01112244 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. ++-+.+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999888765554456677789999886 5553 45567777664
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00034 Score=69.74 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|+||| .|.||..||..|.++|++|++|+ ++.+ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 99999999999999999999995 5542 11 2256
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+||+||.|++....++.. .+++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 799999999876543322 2788998876543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00094 Score=69.79 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=61.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. +.|. + .....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence 5899999999999999999999999999999998876643 1232 0 00011345789
Q ss_pred CEEEEecccchhhHHHHHH-HHHhhCCCCceEEecC
Q 009963 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~snt 262 (521)
|+||+|.... .++. .....++++.+++..+
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999998543 2333 3345678888886444
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0046 Score=61.83 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||+.+|..|+++|++|++++++ +.++... +.|. +....-......+..+++.+.+..+|+||.|++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4444321 1221 0000000000022334445557799999999986
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceeec-ccc-----cccCC----CCeEEEEeCCCCcH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGA-HFF-----SPAHV----MPLLEIVRTNQTSP 305 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig~-hf~-----~P~~~----~~lveiv~~~~t~~ 305 (521)
.. + ..+++.+.+.+.++++|++...++... .+...++. .++++. -++ .|... ..-+.+-..+.. .
T Consensus 70 ~~-~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~-~ 145 (293)
T TIGR00745 70 YQ-T-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGE-N 145 (293)
T ss_pred hh-H-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCc-h
Confidence 53 3 567788988888888888777777544 45544432 344332 221 22211 011122222222 2
Q ss_pred HHHHHHHHHHHhcCCeEEEecCccc
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+....+.+++...|.......|..+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 5566777778877766656555433
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=62.31 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00057 Score=69.35 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=60.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++|+|||+|.||..++..+.. ...+|++|++++++.+...+.+.+ .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 3589999999999999985554 346899999999987775433211 110 12223343 45
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+.+||+||.|.+... .++.. +.+++++++...+|
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 789999998887652 22221 35677876654444
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=60.52 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=46.5
Q ss_pred EEEEEeCChhhHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 149 KVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
||+|||+|..-.+.-. .+... +-+++++|+|+++++....-.+.. ++.-.. .-++..|+|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~--------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGA--------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTT--------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCC--------CeEEEEeCCHH
Confidence 7999999988665332 33332 348999999999988654333222 222111 1256677887
Q ss_pred ccccCCCEEEEec
Q 009963 222 ESFKDVDMVIEAI 234 (521)
Q Consensus 222 ~~~~~aDlVIeav 234 (521)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999885
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=68.31 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=49.6
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.- ...+...+++. +-+|+++|+|+++++... ....+..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 48999999874 33455555543 458999999999987632 2222233321111 246677786
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 6799999999875
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=68.78 Aligned_cols=97 Identities=24% Similarity=0.173 Sum_probs=66.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. ......+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999997644322 1221 001111346789
Q ss_pred CEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCC---cCcHHHHHHh
Q 009963 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS---TIDLNLIGER 273 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS---~l~i~~ia~~ 273 (521)
|+||++.... .++. +....++++++++..+. .++...+.+.
T Consensus 252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 9999987532 3333 35567889998874443 1455566553
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=63.04 Aligned_cols=76 Identities=21% Similarity=0.348 Sum_probs=57.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+..||.|||.|..|.++|..++.+|. ++.++|.+++++....-++ +.|. .--...++....||..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s-----~f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGS-----AFLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------cccc-----ccccCCceEecCcccc
Confidence 36799999999999999999999886 8999999999876532111 1111 0011246667778999
Q ss_pred ccCCCEEEEec
Q 009963 224 FKDVDMVIEAI 234 (521)
Q Consensus 224 ~~~aDlVIeav 234 (521)
-+++++||..+
T Consensus 86 sa~S~lvIiTA 96 (332)
T KOG1495|consen 86 SANSKLVIITA 96 (332)
T ss_pred cCCCcEEEEec
Confidence 99999999876
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=69.38 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=48.5
Q ss_pred eEEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
+||+|||+|..-+ .+...+++. +-+|+++|+| +++++....-+ .+..+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~----~~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALA----KRMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHH----HHHHHhhCCC--------eEEEEeCC
Confidence 4899999998633 445555542 3589999999 78876533222 2222221111 14666777
Q ss_pred c-ccccCCCEEEEec
Q 009963 221 Y-ESFKDVDMVIEAI 234 (521)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (521)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 6 5689999999886
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=71.85 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=55.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (521)
+++|.|||+|.+|+.+|..|+++| .+|++-||+.++++++..... +++...+.+ +.-... .+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD-----~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVD-----AADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEec-----ccChHHHHHHH
Confidence 468999999999999999999999 899999999999888653211 111111000 000001 1346
Q ss_pred cCCCEEEEecccchhh
Q 009963 225 KDVDMVIEAIIENVSL 240 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~ 240 (521)
++.|+||.|+|.....
T Consensus 67 ~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 67 KDFDLVINAAPPFVDL 82 (389)
T ss_pred hcCCEEEEeCCchhhH
Confidence 7889999999987653
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.001 Score=67.52 Aligned_cols=94 Identities=19% Similarity=0.104 Sum_probs=58.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
-++|+|||+|.||..++..+...| .+|+++|+++++.....+. .|. . .+....-.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-~---------~~~~~~~~~~l~ 237 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-N---------AVPLDELLELLN 237 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-e---------EEeHHHHHHHHh
Confidence 368999999999999999998866 6899999999876553221 111 0 000011123467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhC-CCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~snt 262 (521)
++|+||.|++.... ..++..+.+.. ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999986643 33344332222 2455665544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00046 Score=68.48 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=50.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|+|+|.||.+++..|+..|++|+++++++++++...+.+. +.+... ..+.+.....++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~-------~~~~~~-----------~~~~~~~~~~~~ 179 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQ-------RYGEIQ-----------AFSMDELPLHRV 179 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------hcCceE-----------EechhhhcccCc
Confidence 58999999999999999999999999999999887765433221 111100 001111224579
Q ss_pred CEEEEecccc
Q 009963 228 DMVIEAIIEN 237 (521)
Q Consensus 228 DlVIeav~e~ 237 (521)
|+||.|+|..
T Consensus 180 DivInatp~g 189 (270)
T TIGR00507 180 DLIINATSAG 189 (270)
T ss_pred cEEEECCCCC
Confidence 9999999865
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=67.46 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=49.7
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.. +..+...++.. +-+|+++|+|+++++... ....+..++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 58999999875 33445555543 358999999999987632 2222333321111 256677786
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999875
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00056 Score=69.36 Aligned_cols=102 Identities=22% Similarity=0.135 Sum_probs=73.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++||||.|.+|..+|+.+.--|.+|..||+++. -+. . +.+ ......-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~-----------~~~------------~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-E-----------KEL------------GARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-H-----------hhc------------CceeccHHHHHHhC
Confidence 7999999999999999999877889999999874 111 0 000 01122212458999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
|+|+..+|-..+...-+=++..+.++++++|+ ||+- ++-..+.+++.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999988876666567777899999885 7763 45556666664
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00069 Score=70.43 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=73.3
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
++|||||.|.+|..+|..+. .-|.+|..||+.... .+........ .....+. .. ..+....+++ .+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~-~~-------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGE-QP-------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccc-cc-------ccccccCCHHHHH
Confidence 68999999999999999985 569999999987532 1110000000 0000000 00 0111223554 47
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
+.||+|+.++|-..+.+.-+=.+..+.++++++|+ |++- ++-..+.+++.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999887765555566777899999886 5553 45566767664
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=60.47 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=80.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.|.+. .+...-..+++.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 58999999999999999999999999999876531 1 11122333221 11111123458899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~~ 305 (521)
|+||-|. ++.++...++.... ...+++.+.+. |+ -..|+.|. ...+++--|.+.+.+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~------------~e---~~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDD------------PE---LCSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCC------------cc---cCeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9999774 55566666655433 33345433322 11 12355663 4456666677777888
Q ss_pred HHHHHHHHHHHhc
Q 009963 306 QVIVDLLDIGKKI 318 (521)
Q Consensus 306 e~~~~~~~l~~~l 318 (521)
.....+++-++.+
T Consensus 131 ~la~~lr~~ie~~ 143 (205)
T TIGR01470 131 VLARLLRERIETL 143 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 7777666665543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=61.69 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=62.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
+++.|||+|.+|.++|..|.+.|++|+++|.+++.+++.... .+ +. ..+.. .++ +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~------~~----------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---EL------DT----------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hc------ce----------EEEEecCCCHHHHHh
Confidence 589999999999999999999999999999999988763210 00 00 00100 111 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNT 262 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~snt 262 (521)
..+.++|.||-+...|. ...++..+... +....+++-..
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEec
Confidence 23689999999987764 34555555433 45555665443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=69.18 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=61.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5899999999999999999999999999999987654321 1121 00 112 34678
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS 263 (521)
+|+||+|+... .++. +....++++++++..++
T Consensus 268 aDVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGNK-----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence 99999987432 3443 45567889998875443
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=66.78 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=62.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++. +.|. .+....+. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 3689999999999996665543 35689999999999876544332 1120 12223344 56
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++||+||.|+|.... +|. .+.+++++.+.+..|.
T Consensus 190 v~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 8999999999986532 221 2346788877665554
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=59.94 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=56.6
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|.| |..+|..|.+.|..|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999987 88899999999999999998853221 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
||+||.|++...-+..+ .+.++.++++.+..-.++
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdvd 122 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVPD 122 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCccc
Confidence 99999999765333333 245677777766554443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=68.43 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=61.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 0 1122 34688
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCc
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~ 266 (521)
+|+||.+... +.++. +..+.++++++|+ |++...
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 9999998632 23442 4555689999886 555444
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0013 Score=65.83 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=51.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (521)
++|.|||+|-+|++++..|+..|. +|+++||+.++++...+.+...+ .. ..+....+ .+.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776543321110 00 01111112 23467
Q ss_pred CCCEEEEecccc
Q 009963 226 DVDMVIEAIIEN 237 (521)
Q Consensus 226 ~aDlVIeav~e~ 237 (521)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 889999998755
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=67.17 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (521)
.||+|+|+ |.+|+.++..|+..+ .+|.++|+++. .++. . .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 47999999 999999999998855 48999999753 1221 0 01100000 1112333
Q ss_pred cccC-cccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 GVLD-YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+ ++++++||+||.+.-- |..+-+++...+.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3445 4889999999987511 111225555677787767777655554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.001 Score=65.81 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=54.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||. |.||..+|..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999832111 12 2367
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.|++....++.. .+++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999876555443 378999987654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=64.47 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||...+..+.. .+. +|.+|++++++.+...+++.. .+ + .+. ..+. +.+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 589999999999999998865 564 799999999988775543321 11 0 011 2333 467
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.+||+||.|.|.... +|.. .++|++.|....|.
T Consensus 187 ~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCCC
Confidence 899999999986643 3332 35788877665554
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0089 Score=59.66 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=83.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
-|||+||+|.||.+|+...++ .|++|. +-|++.+...++..+.-.--...++....+.....-..+.+..|.|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 489999999999999987654 598865 45888887766654321000000111001110011112344456655443
Q ss_pred --cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC-CcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT-STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt-S~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
...|+||++.--..---+-.+. ......-++.-|. .-..+.-+..... +-.|+- +..+.
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~---Ai~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~ 159 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALE---AILHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGA 159 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHH---HHhcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccC
Confidence 4568889886321111122233 3333344554443 2222222222111 112332 22333
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.-.|...-.+.+|.+.+|.+++..+.
T Consensus 160 GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 160 GDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 34566777889999999999999873
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0091 Score=56.53 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=78.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|.||...+..|.++|.+|++++.+.. .+.. +.+.+.+. ...-.-..+++.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6899999999999999999999999999986532 1111 12222221 0001112346889
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (521)
+|+||-|.. +.++...+... +..+ +++.+.. .|+. +.|+.|. ...++.--|.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~----a~~~-~lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKED----LPEN-ALFNVIT------------DAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHH----HHhC-CcEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998764 55566555443 3333 3443321 2222 2466664 345666667777788
Q ss_pred HHHHHHHHHHHHh
Q 009963 305 PQVIVDLLDIGKK 317 (521)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (521)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8777776666554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=56.42 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=65.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||.+||+| -|..+|..|++.|++|+..|+|+++++.+.+. +. ....+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~------~~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL------NAFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC------eEEECcC-CCCCHHHHhcC
Confidence 589999999 88899999999999999999999988765432 10 0011111 13344557899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
|+|-+.=|. .++ +.-+-+|.+.+.-+.++..-++
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCC
Confidence 999988764 344 3445567777777777754433
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=53.58 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
||+|||+ |.+|..++..+... ++++..+ +++.+..+... . ..+.+.. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 5899995 99999999998885 8887766 54432211111 0 0111110 0000111122
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
..++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999988543 3332344456789999998888754
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0017 Score=64.72 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=51.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (521)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6899999999887664432210 00 0111111 24567
Q ss_pred CCCEEEEecccch
Q 009963 226 DVDMVIEAIIENV 238 (521)
Q Consensus 226 ~aDlVIeav~e~~ 238 (521)
++|+||.|+|..+
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998664
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=61.96 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+++.|+|+ |.+|..++..|+..|++|++++++.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0035 Score=63.55 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=57.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 009963 148 KKVAILGG-GLMGSGIATALIL-S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~-~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (521)
+||+|||+ |.+|..++..+.. . +++++++|+++.. .+.. ++ .... .....+.. ..+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~a-----lD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGVA-----VD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--ccee-----hh--hhcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 2 4689999998542 1100 00 0000 00012222 335
Q ss_pred cccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEe
Q 009963 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
++++++||+||.|.-. |..+-+++...+.++. ++++++.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv 116 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI 116 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 5789999999998732 1113445556677664 5555543
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00068 Score=73.35 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|+||+++||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999886
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0043 Score=63.30 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=63.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++|+|||+|.+|...+..++. .++ +|.+||+++++.++..+++...+ + + .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 3589999999999998877653 454 89999999998876554432111 1 0 11223344 35
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.++|+||.|.|... .++. ..+++++.+.+..|.
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 789999999998663 3343 356888887766554
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0079 Score=63.43 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. . .. ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-~------------vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-Q------------VL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-e------------ec-cHHHHHhh
Confidence 6899999999999999999989999999999987644332 1121 0 00 12 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHh
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER 273 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~ 273 (521)
+|+||++.... ..+..+..+.++++++++..+. .+....+.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999865432 2233555567899999875544 2344555443
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=64.68 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=79.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCc--chh--hcccC-----------------CCCCc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPW--VAT--LYKTD-----------------KIEPL 59 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~--~~~--~~~~~-----------------~~~~~ 59 (521)
|+|||++++|++|+++||+|++||++++ +.+.+++.++.... +. ... .+... .+...
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999877 56666665543220 00 000 00000 00000
Q ss_pred hHHHHHHH------------HHHHHHHH-hCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 009963 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVH 123 (521)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~---~s~~a~~~~~ 123 (521)
. ...+++ .+++.+.. +.+.+.+...+.+.++.+...++++.++.|...-..++ .++|+.++++
T Consensus 279 s-v~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 279 T-VEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred C-HHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 0 000111 12222222 12345567778889999998999999999999988887 4899999999
Q ss_pred HHHh
Q 009963 124 IFFA 127 (521)
Q Consensus 124 aF~~ 127 (521)
+-+-
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 8765
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0051 Score=69.03 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=78.7
Q ss_pred EEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcC-CCceeecccccccCC------------CCe
Q 009963 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAHV------------MPL 294 (521)
Q Consensus 230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~-~~r~ig~hf~~P~~~------------~~l 294 (521)
||.|+|.. .-..++.++.+.+++++++++.+|+.. ++.+...+.. +.+|||.||+...+. ...
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 68899865 346889999999999999999999863 3455555443 357999999975542 356
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-Ccccchhh
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVN 334 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~n 334 (521)
+.+++.+.++++.++.+.+++..+|..++.+. +.+..++.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A 119 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFA 119 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 77889999999999999999999999988886 33444433
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0046 Score=53.72 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=57.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+||+|+|+ |.||+.|+..+.+ .|++ |..+|++++.... +.+. .. .|.- ...+..+.+++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----EL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hh--hCcC--------CcccccchhHHHh
Confidence 48999999 9999999999988 6887 4566777622110 0000 00 0000 012333455543
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
+..+|+||+.. .++.-...++. .+..+..+++.|++++-+++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~---~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEY---ALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHH---HHHHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHH---HHhCCCCEEEECCCCCHHHHH
Confidence 66799999987 33322333333 333477778888888765543
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00069 Score=73.49 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=39.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|++||++++|+||+++||||+|||++++.+.+.++|++++..
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999886
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=57.50 Aligned_cols=179 Identities=21% Similarity=0.192 Sum_probs=103.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.|+-|.+=|..|..+|++|++--+.... .++ ..+.|. ..-+--++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhhc
Confidence 69999999999999999999999998876654433 222 223332 11112356899
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCcHHHHHHhhcCCC--ceeecccccccC----------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~--r~ig~hf~~P~~----------~~~ 293 (521)
+|+|+..+|+. +..++++ +|.+.++++..|.- +.++.+..= ....|. .++=.-|-.|-+ ..|
T Consensus 75 ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP 149 (338)
T COG0059 75 ADVVMILLPDE--QQKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVP 149 (338)
T ss_pred CCEEEEeCchh--hHHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCce
Confidence 99999999976 4567887 89999999987753 334433211 111121 122222222322 123
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEE---Ee--c-C-cccchhhc-hH----HHHHHHHH-HHHHcCCCHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPI---VV--G-N-CTGFAVNR-MF----FPYTQAAF-LLVERGTDLYL 356 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v---vv--~-d-~~Gfi~nR-il----~~~~~ea~-~l~~~G~~~~~ 356 (521)
.+--|..+ .+-...+.+..+.+.+|.+.. .. . + ....+..+ +| ..++..++ .|++.|.+|+-
T Consensus 150 ~LiAV~qD-~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 150 ALIAVHQD-ASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred eEEEEEeC-CCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 33333333 344577888899999884322 11 1 1 12233333 22 23444444 35678887763
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0023 Score=67.58 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (521)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 689999999887654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0041 Score=62.74 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=71.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
=++|+|+|+|.+|..||+.|...|..+.-+.+++...+...+ .+. . ..+-.+-+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-----------~--~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-----------E--FVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-----------c--ccCHHHHHhh
Confidence 479999999999999999999889445555554443332211 110 0 1222355789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhh
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT 274 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~ 274 (521)
+|+||.|.|-+.+...-+=+++...++++++|+...=+ +.-.++.+++
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 99999999999887766667888899999988744333 3334565555
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0075 Score=56.74 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=58.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.+|++||+|.+|..+...+-.. .+ .|.+||++.+++....+. .+ ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHH
Confidence 3799999999999999876543 23 589999999987654321 01 112245544
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+.+.|+|+||...+ .++.-+.+-|++ .-+.|++|. +.+.
T Consensus 58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~SV-GALa 96 (255)
T COG1712 58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVMSV-GALA 96 (255)
T ss_pred hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEEec-hhcc
Confidence 48999999998643 233333333332 346777764 4454
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0036 Score=64.98 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=35.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 579999999999999999999999999999999876653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0061 Score=62.24 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=59.4
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++++|||+|.+|...+..++ ..++ +|++|++++++.+...+++...+ | + .+....+. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 58999999999999999887 3664 79999999998877554432111 1 0 12223344 357
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
.+||+||.|.|.... ++. .+.+++++.+...
T Consensus 193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTAM 223 (326)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEee
Confidence 899999999876532 221 1235666655433
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=65.38 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (521)
++|+|||+|.||..++..+...|. +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.004 Score=66.83 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=51.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++++|+|+|.||.+++..|+..|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988766533211 000011 1122336789
Q ss_pred CEEEEecccch
Q 009963 228 DMVIEAIIENV 238 (521)
Q Consensus 228 DlVIeav~e~~ 238 (521)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998765
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=57.70 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+||+|||+ |..|+-|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 59999999 999999999999999999999999998754
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.006 Score=60.92 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
++|.|||+|-+|++++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 479999999999999999999997 6999999998876643
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0012 Score=66.84 Aligned_cols=51 Identities=14% Similarity=-0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHhh
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 519 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 519 (521)
+.+|++.++++||+.+++++..++.++| .++..++||| +|||+++|.+|-+
T Consensus 186 i~nr~~~~~~~Ea~~l~~~g~~~~~~id--~~~~~~~g~~~~~~Gp~~~~D~~Gl~ 239 (311)
T PRK06130 186 IANRIQHALAREAISLLEKGVASAEDID--EVVKWSLGIRLALTGPLEQRDMNGLD 239 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCccCCCHHHHhhhhccc
Confidence 8999999999999999999999999999 8888899998 6999999998854
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=54.64 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=58.6
Q ss_pred EEEEEe-CChhhHHHHHHHHhCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 009963 149 KVAILG-GGLMGSGIATALILSN-YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (521)
Q Consensus 149 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (521)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-.... .. ... . .....+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~----~~----~~~--~------~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS----EV----FPH--P------KGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH----HT----TGG--G------TTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee----hh----ccc--c------ccccceeEeecchhHh
Confidence 799999 7999999999998853 34 455565552211100 00 000 0 0011222222 34568
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
.++|+||.|+|.. ..+++...+ +..++.++++++....+
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 9999999999865 344555544 45788888998876443
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=57.64 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=44.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+||+|||+|.||..++..+.+.+ ++ +.+++++++..+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 69999999999999999986542 44 4567887755443210 1223445655
Q ss_pred c--cCCCEEEEecccc
Q 009963 224 F--KDVDMVIEAIIEN 237 (521)
Q Consensus 224 ~--~~aDlVIeav~e~ 237 (521)
+ ..+|+||||...+
T Consensus 58 ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 58 LLAWRPDLVVEAAGQQ 73 (267)
T ss_pred HhhcCCCEEEECCCHH
Confidence 3 7899999998643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=52.53 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5899999998776666665568999999999999987754
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0013 Score=66.73 Aligned_cols=52 Identities=10% Similarity=-0.071 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 519 (521)
-+.+|++.++++||+.|+++++.++++|| ..+..+.||| +|||+++|.+|-+
T Consensus 184 fi~nri~~~~l~EAl~l~e~g~~~~e~iD--~a~~~g~G~~~~~~Gpf~~~D~~Gld 238 (314)
T PRK08269 184 YIVPRIQALAMNEAARMVEEGVASAEDID--KAIRTGFGLRFAVLGLLEFIDWGGCD 238 (314)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHHHhhhHH
Confidence 48999999999999999999999999999 8888899998 5999999998864
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0038 Score=67.37 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=36.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
-++|+|||+|.||..++..|...|+ +|++++++.+.++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 3689999999999999999999997 799999999887654
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0062 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
++|.|||+|.+|+.+|..|+++|+ +++++|.|.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0081 Score=61.20 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchH------------HHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~l~~~ 42 (521)
|+++|++++|++|+++||||+|||++++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 4789999999999999999999998877 55555666555443
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0046 Score=58.55 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999998 89999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0066 Score=59.85 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=53.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~ 221 (521)
+||++||.|.+--+.-...... |..|..+|+++++.+.+.+-+...+. .. .++++. .| .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999966544433333 45788999999998877543331110 01 122221 11 1
Q ss_pred -ccccCCCEEEEecc--cchhhHHHHHHHHHhhCCCCceEEec
Q 009963 222 -ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 222 -~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
.++.++|+|+.|.- .+.+-|.+++..|.+++++|++++.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 35789999999863 23446999999999999999988765
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=59.96 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=51.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+ | + .+....+. +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999998888875 45 489999999998887654432111 1 0 12223444 457
Q ss_pred cCCCEEEEecccc
Q 009963 225 KDVDMVIEAIIEN 237 (521)
Q Consensus 225 ~~aDlVIeav~e~ 237 (521)
.+||+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999988764
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.044 Score=54.04 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=109.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
|.||.-||+|..|+.-...++.. .++|+++|++..++..-...- +..++.-++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999887766654 468999999998876432110 1111111111 11134566777
Q ss_pred cc-cccCCCEEEEecc-------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeec
Q 009963 221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (521)
Q Consensus 221 ~~-~~~~aDlVIeav~-------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~ 283 (521)
.+ .++.+|+|+.+|- .|+..-...-+.+.+....+.|++ --|+.|+. .|...+.+. --|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n--~~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHN--SKGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcC--CCCc
Confidence 64 5899999999882 233333444455666666677765 56777764 444444432 2356
Q ss_pred ccc---cccC----------CCCeEEEEeCCCCcH--HHHHHHHHHHHhc-CCeEEEecC-----cccchhhchHHHH--
Q 009963 284 HFF---SPAH----------VMPLLEIVRTNQTSP--QVIVDLLDIGKKI-KKTPIVVGN-----CTGFAVNRMFFPY-- 340 (521)
Q Consensus 284 hf~---~P~~----------~~~lveiv~~~~t~~--e~~~~~~~l~~~l-Gk~~vvv~d-----~~Gfi~nRil~~~-- 340 (521)
||- ||-- ..|=-.++.|..|.+ .+++.+..+...+ -+..+.... -.-...|-+++.-
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence 662 3321 112223556655432 3344444444443 222333321 1223444444322
Q ss_pred -HHHHHHHHH-cCCCHHHHHHHH
Q 009963 341 -TQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 341 -~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
+|....+-+ -|.+.+++-.+.
T Consensus 229 sins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHh
Confidence 333333333 577888887765
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0078 Score=59.26 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... ... .+....+++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~~------------~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GAL------------GVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CCC------------CccccCCHHHh
Confidence 58999998 99999999988764 67755 478887643321 000 1122345543
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
+.++|+||++.+.+.. .++.. ..+..+.-++.-|.+++.+++
T Consensus 58 l~~~DvVid~t~p~~~--~~~~~---~al~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEAT--LENLE---FALEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHHH--HHHHH---HHHHcCCCEEEECCCCCHHHH
Confidence 4579999988865532 22222 223333433334555665543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=54.29 Aligned_cols=129 Identities=22% Similarity=0.254 Sum_probs=78.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|.|||+|.++..=+..|++.|.+|+++..+ ++- .. +.+.|.++ .+.-.-+.+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999899999999999999554 332 11 12233321 111111235688
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (521)
++++||-|+ +|.++.+.+.+. +....+++.+... |.. +.|+.|+ ...+++--|.+.+.
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEECCCc
Confidence 999999986 466666555543 3333344333221 111 2466664 34566666777777
Q ss_pred cHHHHHHHHHHHHh
Q 009963 304 SPQVIVDLLDIGKK 317 (521)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (521)
+|.....+++-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 88776666655544
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.047 Score=46.58 Aligned_cols=69 Identities=29% Similarity=0.354 Sum_probs=47.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|||+|.+|......+.+. +.+| .++|++++..+...+. .| +...+++++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YG-------------IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-------------SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hc-------------ccchhHHHHH
Confidence 3899999999999999888776 4554 5889999887664211 11 123344433
Q ss_pred cc--CCCEEEEecccchh
Q 009963 224 FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~ 239 (521)
++ +.|+|+.++|....
T Consensus 58 l~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSSH 75 (120)
T ss_dssp HHHTTESEEEEESSGGGH
T ss_pred HHhhcCCEEEEecCCcch
Confidence 33 68999999887653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=59.97 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.++|+|||+|.||...+..+... ++ .|.+||++++..++..+++.+.+ + -.+....++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 35899999999999999888743 44 78999999998877654432110 1 01222344443
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+. +|+|+.|.|.... +|. .+.+++++.|.+..|.
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 44 9999999886532 222 1245677776555543
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=58.94 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=63.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
..+.++|||+|.++......+..- + -+|.+|+++++..++...++.+. +. ..+....+. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 356899999999999998877653 3 48999999999988765543322 11 112334443 5
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++++||+||.|.|.+..+ +. .+.+++++-|....|
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 689999999999876432 21 234567776654433
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.034 Score=58.85 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
.++|.|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3689999999999999999999999999999887644
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.011 Score=60.59 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|+|||+|-.|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 489999999999999999999998 89999986
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.027 Score=54.48 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=74.7
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh---cC-CCceeecccccccCCCC
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YS-KDRIVGAHFFSPAHVMP 293 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~---~~-~~r~ig~hf~~P~~~~~ 293 (521)
++|.++++++|++|.=.|..-. --.+++++.+++++++|++ ||-|+|...+...+ .| .-.+..+||-. +..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-VPgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-VPEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence 4456889999999999886542 2477888899999999884 77788776555433 32 22344455432 22344
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.-..+.....+++.++.+.++.+..|+.+.++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 333344456789999999999999999999885
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.007 Score=59.86 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
+||+|||+|.||..++..+.+. +.++..+ +++.. .+...+ .... .+..+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~--------~~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRR--------ALGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhh--------hhcc-------------CCeeeCCHHHhc
Confidence 5999999999999999998775 5555433 33221 111100 0000 12234555554
Q ss_pred cCCCEEEEecccch
Q 009963 225 KDVDMVIEAIIENV 238 (521)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (521)
.++|+||||.+...
T Consensus 60 ~~~DvVve~t~~~~ 73 (265)
T PRK13303 60 QRPDLVVECAGHAA 73 (265)
T ss_pred cCCCEEEECCCHHH
Confidence 56899999998653
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=45.95 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 178 (521)
++++|+|.|.+|.+++..+... +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6899999999999999999998 578999987
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0064 Score=59.89 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=65.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
.||+|||.|..|.--|+...--|-+|++.|+|.+++.+.-. .+ .+++ ..+.+...++ +.+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f-----~~rv--------~~~~st~~~iee~v~~ 231 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LF-----GGRV--------HTLYSTPSNIEEAVKK 231 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hh-----Ccee--------EEEEcCHHHHHHHhhh
Confidence 58999999999999999888889999999999998876321 10 1111 0111111223 45899
Q ss_pred CCEEEEec--ccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 227 VDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 227 aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+|+||-+| |-.. --+-++++..+.++|+++|++.
T Consensus 232 aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 232 ADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEE
Confidence 99999987 2211 1234567777788999988765
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.051 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC
Q 009963 148 KKVAILGGGLMGSGIATALILS 169 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~ 169 (521)
.+|+|+|+|+||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999988765
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.026 Score=57.28 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.++...+..+..- --+|.+|++++++.++..+.++ +.+ + .+....+. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHH
Confidence 36899999999999988877653 2489999999999887553321 111 0 22234444 55
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.+||+|+.|.+.... +|. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence 8999999998875533 332 1356788877655554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=57.48 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=55.0
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.|. +|..+|..|...|..|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999986532211 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++-..-+.. ..+++++++++..+.
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCCC
Confidence 9999999975422222 246888988876653
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.014 Score=57.99 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=52.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|+|+|-++.+++..|++.|. ++++++|+.+++++..+...+... .+. .....+.+...+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~~----------~~~~~~~~~~~~ 190 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AVE----------AAALADLEGLEE 190 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------ccc----------cccccccccccc
Confidence 689999999999999999999995 799999999998775543321110 000 001112233336
Q ss_pred CCEEEEecccch
Q 009963 227 VDMVIEAIIENV 238 (521)
Q Consensus 227 aDlVIeav~e~~ 238 (521)
+|+||.|+|-.+
T Consensus 191 ~dliINaTp~Gm 202 (283)
T COG0169 191 ADLLINATPVGM 202 (283)
T ss_pred cCEEEECCCCCC
Confidence 899999998765
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.025 Score=56.97 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=62.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.+|..-+..++.- .+ +|.+|++++++.++..+++.+.+ | -.+....+. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 36899999999999888877653 33 89999999999887654443211 1 023333444 56
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.+||+|+.|.+.... +|. .+.++|++.+....|.
T Consensus 180 v~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 180 LRDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred HhcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCCC
Confidence 8999999998876533 221 1245677766555443
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.079 Score=50.34 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=84.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+.. +.+.+.+.. +...-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998776 22222 233333221 111223355677
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (521)
+++||-|+. |.++.+.+++...+ ..+++ |.. ..|.. +.|+.|. +..|+.--|.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999875 56677777665444 33443 321 22332 4666675 346777677777778
Q ss_pred HHHHHHHHHHHHh
Q 009963 305 PQVIVDLLDIGKK 317 (521)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (521)
|.....+++-++.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 8777776666555
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.008 Score=63.20 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=34.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
++|.|||+|-||..++..|+..|. ++++++|+.++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 689999999999999999999996 799999998876553
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=61.30 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (521)
++|.|||+|-||..+|.+|..+| ..|++.+|+.+++....
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 57999999999999999999999 58999999999887643
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.011 Score=54.53 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=33.0
Q ss_pred EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 150 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987654
|
... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.059 Score=62.58 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=52.1
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 009963 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (521)
Q Consensus 144 ~~~~~kI~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (521)
...++||+|||+|.||..++..|++. +++ |++.|++++.+++..+.. .+ ++
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 34578999999999999999999875 334 999999998776543211 01 00
Q ss_pred hhhccccc-ccCcc----cccCCCEEEEecccchh
Q 009963 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (521)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~ 239 (521)
-+.. ..|.+ .++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 0111 12222 24679999999998754
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.014 Score=59.20 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++++|||+|..+..-+..++. .++ +|.+|+++++++++..+++.+ + + -.+....+. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 589999999999988887654 344 899999999988876544322 0 1 123344454 568
Q ss_pred cCCCEEEEecccch--hhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
++||+||.|.+... .+ |. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999987664 22 21 2357788887766654
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.064 Score=48.61 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=73.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.+|...+..|...|++|++++.+ ..+...+ .+.+. ...-.-..+++.++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-----------l~~i~---------~~~~~~~~~dl~~a 71 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-----------LPYIT---------WKQKTFSNDDIKDA 71 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-----------ccCcE---------EEecccChhcCCCc
Confidence 68999999999999999999999999999633 2222110 01110 00001112458899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC--CCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t~~ 305 (521)
|+||-|. ++.++...+...- .... ++.+.. .|+. ..|+.|+. ..+++--|.+.+.+|
T Consensus 72 ~lViaaT-~d~e~N~~i~~~a----~~~~-~vn~~d------------~~~~---~~f~~pa~v~~~~l~iaisT~G~sP 130 (157)
T PRK06719 72 HLIYAAT-NQHAVNMMVKQAA----HDFQ-WVNVVS------------DGTE---SSFHTPGVIRNDEYVVTISTSGKDP 130 (157)
T ss_pred eEEEECC-CCHHHHHHHHHHH----HHCC-cEEECC------------CCCc---CcEEeeeEEEECCeEEEEECCCcCh
Confidence 9999876 4555544443322 2222 322221 1221 24566643 345555566667788
Q ss_pred HHHHHHHHHHHh
Q 009963 306 QVIVDLLDIGKK 317 (521)
Q Consensus 306 e~~~~~~~l~~~ 317 (521)
.....+++-++.
T Consensus 131 ~la~~lr~~ie~ 142 (157)
T PRK06719 131 SFTKRLKQELTS 142 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777666665544
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0088 Score=62.56 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.1
Q ss_pred EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 009963 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (521)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987754
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.046 Score=53.02 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=73.7
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH---HHhhcC-CCceeecccccccCCCC
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYS-KDRIVGAHFFSPAHVMP 293 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i---a~~~~~-~~r~ig~hf~~P~~~~~ 293 (521)
++|.++++++|++|.=.|..-. -..+++++.+.+++++|++ ||-|+|...+ .+.+.| .-.+..+||-. +..++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa-VPgt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC-VPEMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC-CCCCC
Confidence 4456889999999999986542 2477888889999999884 7778877644 444443 22344455532 22233
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
-=-++.....+++.++.+.++.+..|+.+.++.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222333456789999999999999999999885
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.035 Score=59.75 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=36.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999998899999999999999988764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.085 Score=44.75 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES 223 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~ 223 (521)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+ .|. .-+.+. ++ + ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 579999999999999999977799999999998777542 221 011110 01 1 23
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+.+||.||.+.+++. ....+...+.+..+.-.|++-..
T Consensus 60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEES
T ss_pred ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 688999999887663 33344444555455455665433
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.077 Score=53.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~ 180 (521)
.||+|||.|.||..++..+.+. +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5899999999999999988765 78876 479985
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=59.26 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 999999974
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=56.23 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=51.9
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.|. .|.+|+..|...|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997432221 12468
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||.|++...-+.. +.+++++++.+..
T Consensus 203 aDIvI~AtG~~~~v~~-------~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPELIKK-------DWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCcCCH-------HHcCCCCEEEEEE
Confidence 9999999953221211 3467888876543
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.019 Score=55.43 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 179 (521)
+||.|+|+|.+|.+||..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999985 9999999
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.024 Score=58.91 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=52.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++...+ .|. ..+....+. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~-----~~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY-----PQI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-----CCC----------ceEEEeCCHHH
Confidence 46899999999999999887762 23 89999999999887654432211 010 013334444 5
Q ss_pred cccCCCEEEEeccc
Q 009963 223 SFKDVDMVIEAIIE 236 (521)
Q Consensus 223 ~~~~aDlVIeav~e 236 (521)
.+.+||+|+.|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 58899999988853
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.024 Score=62.32 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=61.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+. ...+-.|..+..+ +-....+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~----------~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEE----------IMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHH----------HHHhcCcccc
Confidence 579999999999999999999999999999999988775421 0000011111000 0001236799
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
|.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus 483 ~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 99999998876533 233334444444445543
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.057 Score=55.37 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=60.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|..+..-+..+.. .. -+|.+|++++++.+...+++.+ .+ + .+....+. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 3689999999999888765543 23 4899999999998876544321 11 0 12233444 55
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++||+|+-|.+.... .-+|. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999864320 01111 1346778766555543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.018 Score=45.56 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.025 Score=62.67 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=63.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (521)
.+|.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.+ .|.. ...+..+-..-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 57999999999999999999999999999999998876532 1210 000000000001 2468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||.||.+++++.. ...+...+.+..++-.|++-..
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeC
Confidence 99999999987643 3344445555555556665443
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.036 Score=54.87 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.5
Q ss_pred eEEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 009963 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~ 179 (521)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5899999 59999999999886 477654 46743
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.048 Score=58.56 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=36.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999877654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=56.78 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (521)
++|.|+|+|-.|++|+..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988766443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.085 Score=56.30 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999987654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.11 Score=55.88 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=33.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4578999999999999999999999999999987653
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.09 Score=53.86 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.1
Q ss_pred eEEEEEeCChhhHHHHHHHHh
Q 009963 148 KKVAILGGGLMGSGIATALIL 168 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~ 168 (521)
.+|+|+|.|++|++++..+.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999998776
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.058 Score=47.85 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.29 Score=52.78 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997653
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.016 Score=61.03 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=31.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999975
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.039 Score=53.39 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=78.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc-------------c
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS-------------L 214 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-------------~ 214 (521)
||.|||+|..|+.++..|+..|+ +++++|.|.=.......++ +-+.-.-|+-..+.+...+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQf---lf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF---LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcccc---CCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 7899988632211111000 00000011111111111111 1
Q ss_pred cccccC--cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEec-CCcCcHHHHHHhhcCCCceeecccccccCC
Q 009963 215 LTGVLD--YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN-TSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291 (521)
Q Consensus 215 i~~~~~--~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn-tS~l~i~~ia~~~~~~~r~ig~hf~~P~~~ 291 (521)
+....+ .+-+++.|+||.|+- +.+. +..+.+.-... +..+.+. +.+.. ..+.-..+........++..|...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~-G~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFK-GNAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCc-eEEEEEcCCCCCCcccCCCCCCCC
Confidence 110011 123688999999974 3443 33333332222 2334332 22211 011101111112333444333334
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
.|+.++-..+......++.+..++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 6777777777777777888777764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.26 Score=52.61 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999986
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=55.10 Aligned_cols=130 Identities=19% Similarity=0.304 Sum_probs=81.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|.|||+|.++..=+..|.+.|.+|+++-.+ ++- . .+.+.|.++ .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~-----------~l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-T-----------AWADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H-----------HHHhCCCEE---------EEeCCCChHHhC
Confidence 68999999999999899999999999998543 331 1 122333321 111111235688
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (521)
++++||-|+ +|.++.+.+.+ .|....+++.+.. .|+ .++|+.|. ...+++--|.+...
T Consensus 72 ~~~lv~~at-~d~~~n~~i~~----~a~~~~~lvN~~d------------~~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAAT-DDDAVNQRVSE----AAEARRIFCNVVD------------APK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECC-CCHHHhHHHHH----HHHHcCcEEEECC------------Ccc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 999998885 45556555544 3444456653332 121 23466664 45677777888888
Q ss_pred cHHHHHHHHHHHHhc
Q 009963 304 SPQVIVDLLDIGKKI 318 (521)
Q Consensus 304 ~~e~~~~~~~l~~~l 318 (521)
+|.....+++-++.+
T Consensus 132 sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 132 SPVLARLLREKLESL 146 (457)
T ss_pred CcHHHHHHHHHHHHh
Confidence 888877777766654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.036 Score=55.54 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (521)
+++.|+|+|-+|.+|+..|+..|+. |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.031 Score=58.34 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=33.9
Q ss_pred eEEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+||.++|+|.||++. ...|.++|++|+++|++++.++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 489999999999865 7888889999999999888666543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.065 Score=53.17 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
+++.|+|+|-.+.+++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877653
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.12 Score=54.71 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (521)
.+|+|||.|+||.+++..+.++ |. + +.++|++.+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 5899999999999998877543 33 3 4566888664
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.053 Score=45.32 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=49.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|.|||+|.+|..=+..|.+.|.+|+++..+.+..+ +.++ +. ...+ +++.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 6899999999999999999999999999998861111 1111 00 1112 46889
Q ss_pred CCEEEEecccchhhHHHHHHHHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLE 249 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~ 249 (521)
+|+||.|. ++.++.+.+.+...
T Consensus 61 ~~lV~~at-~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 61 ADLVFAAT-DDPELNEAIYADAR 82 (103)
T ss_dssp ESEEEE-S-S-HHHHHHHHHHHH
T ss_pred heEEEecC-CCHHHHHHHHHHHh
Confidence 99999765 45666666665443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.076 Score=51.29 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999998 899999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.059 Score=55.92 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.062 Score=53.77 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
+++.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999997 8999999965
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.064 Score=59.65 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=61.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c--cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y--ES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~--~~ 223 (521)
++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+ .|.- -..+. .+.. + ..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GD--at~~~~L~~ag 461 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMK------VFYGD--ATRMDLLESAG 461 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCe------EEEEe--CCCHHHHHhcC
Confidence 68999999999999999999999999999999999887542 1210 00000 0110 1 24
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
++++|+||.++.++.. ...+...+.+..++-.|++
T Consensus 462 i~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 462 AAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 6789999999866543 3344444555444445554
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=44.82 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=28.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~ 186 (521)
++|+|+|+|-.| .+|..++++ |++|+++|.+..+-+.+
T Consensus 183 ~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 183 KWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred cEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 689999998766 456556655 99999999997554443
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.1 Score=52.68 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=100.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--------CCcEEEE---eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--------NYPVILK---EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--------G~~V~l~---d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
..+|+|+|.|++|++++..+.++ |.++.+. |++...... . .+... ......+..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~-~-~~~~~-~~~~~~~~~------------ 67 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD-L-DLLNA-EVWTTDGAL------------ 67 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc-c-cccch-hhheecccc------------
Confidence 46899999999999999988765 4454443 444333210 0 00000 000000000
Q ss_pred ccccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHH--HHHHhhcCCCceeecccccccCCC
Q 009963 216 TGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAHVM 292 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~--~ia~~~~~~~r~ig~hf~~P~~~~ 292 (521)
....+.....+.|+|+|+++.+.+-.+. ...+.+.+..+. +++.|-..+... +|.+.... -|.+|+.-+.++
T Consensus 68 ~~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~----~g~~l~yEAtV~ 142 (333)
T COG0460 68 SLGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEK----NGVKLLYEATVG 142 (333)
T ss_pred cccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHH----hCCeEEEEeeec
Confidence 0001122346788999999987776665 555555555555 444554433332 44443321 244444333322
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHH-HcCCCHHHHHHHHHhcCCC-ccH
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLIDRAITKFGMP-MGP 370 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~-~~G~~~~~ID~a~~~~g~p-~GP 370 (521)
.| --.+..+++.+. |-....+.. |+ ....|..+.-+ +++.+.+|+-+-.+.+||. -=|
T Consensus 143 ------gG----iPiI~~lr~~l~--g~~I~~i~G----Il----NGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~DP 202 (333)
T COG0460 143 ------GG----IPIIKLLRELLA--GDEILSIRG----IL----NGTTNYILTRMEEGGLSFEDALAEAQELGYAEADP 202 (333)
T ss_pred ------cC----cchHHHHHhhcc--cCceEEEEE----EE----eccHHHHHHHHHccCCCHHHHHHHHHHcCCCCCCC
Confidence 11 113444555444 444444332 22 22334444333 4445777766666666762 112
Q ss_pred HHHhhhcCchHHHHHh
Q 009963 371 FRLADLVGFGVAIATG 386 (521)
Q Consensus 371 f~~~D~~Gld~~~~~~ 386 (521)
..|.-|+|..+++.
T Consensus 203 --t~DleG~DaA~Kl~ 216 (333)
T COG0460 203 --TDDLEGIDAARKLV 216 (333)
T ss_pred --CCCccchHHHHHHH
Confidence 47899999987753
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.06 Score=53.12 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 479999999999999999999995 899999874
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.076 Score=55.43 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred eEEEEEeCChhhHHHHH-HHHh-----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT-ALIL-----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~-~la~-----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||+|||+|+.+..--. .+.. .+.++.++|+++++++. +....+++++.-... -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecCH
Confidence 58999999987655322 2222 25689999999998873 223333444432111 246667776
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 6799999999886
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=54.10 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.021 Score=58.95 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 899999874
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.24 Score=52.78 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 47899999999999999999999999999999999876643
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.043 Score=52.99 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.+|..|++.|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 889998763
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.053 Score=52.79 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 8899998753
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.013 Score=58.38 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888865
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.067 Score=55.00 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--c
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--E 222 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 222 (521)
+.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+... ..+ +.+.. . .... ..++ .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~----~~~------~~~~~-----~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS----DVH------PHLRG-----L-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH----HhC------ccccc-----c-cCce-eecCCHH
Confidence 469999997 99999999999876 677655433322211110 000 00000 0 0000 1111 1
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
...++|+|+.|+|.... .++..++ ...++.++++++...++
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999997643 2333333 34578899999877653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.06 Score=53.42 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.7
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|.|||.|.. |..+|..|.+.|..|+++.... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999877 9999999999999999875322 122 2467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+||+||.|++-.- ++.. ..+++++++++...
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGi 231 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGM 231 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEccc
Confidence 8999999998432 3332 56889999876553
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.045 Score=61.33 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (521)
.+|+|||+| .|+.+|..|+++|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899999864
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=52.61 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCcc-c
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYE-S 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~-~ 223 (521)
.||+|+|+|.||..++..+... +++|+. .|.+++......++. .++. .+... ...... -..+....+++ .
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988754 566654 465654333221110 0000 00000 000000 01122333333 3
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.++|+||+|.+.... .+... .++..++.+++|+|.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 5789999999987643 22222 333446777777764
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.065 Score=52.35 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 899998863
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.07 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+||.|+|+ |.+|+.++..|.++|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48999996 9999999999999999999999997643
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.023 Score=59.17 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 89999988
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.037 Score=53.53 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~ 182 (521)
.+|.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 479999999999999999999998 79999977533
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.072 Score=48.29 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=48.9
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..++..|.+.|..|++++.....++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 5899999999999999999886543322 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
||+||.|+....-++. ..+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CEE
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecCCcc
Confidence 9999999975543433 3578999988766544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.099 Score=51.84 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.| ..|..+|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999999 9999999999999999999864332221 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999964432322 3468899887654
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.12 Score=49.89 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 178 (521)
++|+|.|.|.+|..+|..|...|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7787
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.17 Score=50.48 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=66.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-C---
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D--- 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~--- 220 (521)
-++|+.||.|..|-.-...++.. +-.++.+|++++.++.+++.+.+. .| + ..++++.. |
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 36899999998866543333333 346999999999998877543210 11 1 11222211 1
Q ss_pred -cccccCCCEEEEecccc--hhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 221 -YESFKDVDMVIEAIIEN--VSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 221 -~~~~~~aDlVIeav~e~--~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.....+.|+|+..+--. .+-|++++..+.+.++|+.++..-++
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 12356899999886322 24588999999999999998876553
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.12 Score=45.72 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|+|- ...|..++..|.+.|..|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56699999999999999999986432221 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|+.-..-++.+ .+++++++.+....
T Consensus 72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccCHH-------HcCCCCEEEEcCCC
Confidence 99999999766444433 47899998765543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.084 Score=51.31 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~ 180 (521)
.||.|||+|-.|+.++..|++.| .+++++|.|.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999874 3899999763
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.042 Score=57.85 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.+|.++|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.16 Score=47.86 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 589999999999999999999998 699999873
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.41 Score=51.02 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|+|+|.+|.++|..|++.|++|++.|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998764
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.03 Score=56.68 Aligned_cols=49 Identities=6% Similarity=-0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHH
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKEL 516 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 516 (521)
-|.+|++.++++||+.++++++.++++|| ..+..+.|++ +||+.+.|..
T Consensus 188 ~i~nrl~~a~~~EA~~l~~~g~~~~~~id--~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 188 FVLNRLQGALLREAFRLVADGVASVDDID--AVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCccCcCHHHHHhcc
Confidence 48999999999999999999999999999 8778888987 8999999864
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.034 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999998 78999875
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.046 Score=54.30 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|-+|+.++..|+.+|+ +++++|-|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999998 899999874
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.082 Score=50.57 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|+|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57889987 999999999999999999999999876544
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.12 Score=44.30 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred eEEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+||| -+..|.-+...|.++|++|+.++...+.+. .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5799999 588999999999999999999886654321 1122334444
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceE
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il 258 (521)
. ...|+++.++|.+. --++++++.+. ....++
T Consensus 52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVW 84 (116)
T ss_dssp CSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEE
T ss_pred CCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEE
Confidence 4 68999999997553 34677776654 333444
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.13 Score=52.30 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEEeCChhhHHHHHHHHhC
Q 009963 149 KVAILGGGLMGSGIATALILS 169 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~ 169 (521)
||+|+|.|++|++++..+.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 899999999999999998773
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.18 Score=51.95 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (521)
+|.|+|+|.+|-..+..+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999988777777885 78888999999988753
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=50.42 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=55.2
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..+|..|...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 589999998 8899999999999999999987654332 23568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||-|++-..-++.+ .+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEeecc
Confidence 99999999633223333 36899998876543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.3 Score=48.96 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=55.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 224 (521)
.||+|||+|.+|......+.+. ++++ .++|+|++....... .+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 5899999999999977776654 5565 577998864321110 1123211 011111110 1124
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
.+.|+|+++.+.... .+... .....++.+.++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCccc
Confidence 679999999986543 22222 2345678888888753
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.12 Score=54.47 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc------c
Q 009963 149 KVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL------T 216 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i------~ 216 (521)
||.|||+|..|+.++..|+..|+ +++++|.|.=.......++ +-+.-.-|+-..+.+.+.+..+ .
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQf---Lf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQF---LFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCc---cCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642221111000 0000011111111111111111 1
Q ss_pred ccc--------C---cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcCCCceeecc
Q 009963 217 GVL--------D---YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYSKDRIVGAH 284 (521)
Q Consensus 217 ~~~--------~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~~~r~ig~h 284 (521)
... + .+-+++.|+||.|+- +.+.+..+-+..... +. ++-+.|.+.. ....-.+++-...-+..
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~-G~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTK-GNTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEecccce-eEEEEEeCCCCCCccCC
Confidence 100 0 122578999999973 344443332322221 22 3333333221 00000011100111222
Q ss_pred cccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 009963 285 FFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI 318 (521)
Q Consensus 285 f~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 318 (521)
.-.|....|..++-..+..-+-.++.+++++..+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 2122334677778777778888999999998875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.11 Score=54.06 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.2
Q ss_pred cceEEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 146 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..+||.|+ |+ |.+|..++..|+++|++|++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998765
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.3 Score=51.66 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=33.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
.+||.|+|.|.-|.+.|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999988765
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.17 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 699999999999999999999987 677789877
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.077 Score=40.72 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 152 ILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|||+|.-|...|..|+++|++|+++|.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998764
|
... |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.069 Score=54.30 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
.|+|||+|..|.++|..|++.|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.17 Score=51.00 Aligned_cols=87 Identities=24% Similarity=0.209 Sum_probs=59.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++.|.|.|-.|.++|..+...|..|.++++||=.+-++ .++-+...+-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 567888999999999999999999999999999643222 12222222223456788
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
|++|.|.-...-+..+ -...+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHH----HHHhccCCeEEe-ccc
Confidence 9999987654333332 233578888886 544
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.61 Score=43.27 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=31.5
Q ss_pred eEEEEE-eCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAIL-GGG-LMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VI-G~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.|+++| |+| -+|.+|++.|+++|+.|.+.|++.+.++...
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 455555 553 5799999999999999999999988665543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.28 Score=47.76 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+ |.+|..++..|+.+|++|++.+++++.++..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999987 9999999999999999999999998766543
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.38 Score=46.09 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~ 183 (521)
.+|.|+|.|-.|+-.+..|++.|+ +++++|.|.=.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 489999999999999999999998 889998875433
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.058 Score=56.10 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
|++|.|||+|.-|...|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999988653
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.11 Score=52.31 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999998 899999764
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.27 Score=48.55 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=66.1
Q ss_pred HHHHhhccCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 009963 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (521)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (521)
.+||.+....|..+ +-|.|||+|-.|+-.+..|++.|+ .+.++|.++=.+.....+. .+.+..-|
T Consensus 61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs---~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHS---CATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhh---hhhHhhcC
Confidence 47887766555321 358899999999999999999998 6888888776555433221 11122223
Q ss_pred CCCHHHHHhhhcccc-----------ccc-Cccc--ccCCCEEEEecccchhhHHHHHHH
Q 009963 202 KMTQEKFEKTISLLT-----------GVL-DYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (521)
Q Consensus 202 ~~~~~~~~~~~~~i~-----------~~~-~~~~--~~~aDlVIeav~e~~~~k~~v~~~ 247 (521)
.-...-....+..|. ++. +-++ ..+-|+|++|+ ++.+.|..+++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 222222222222221 121 2222 47899999998 567777777653
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.072 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
+||.|+|+|.+|+.++..|++.|+ +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999763
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.18 Score=52.54 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=60.7
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..+||+|+|+ |..|..+...|..+ +++|+.+..+.++-+. +......+. .+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l~-~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHLI-TQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCcccc-Cccc---------ccee-cCCHHH
Confidence 4579999999 99999999999988 6799988775443211 000000000 0000 0000 112233
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
++++|+||.|+|.. .-.++...+ ..++.+++++|..-.
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl 139 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRL 139 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhcc
Confidence 68899999999875 333444443 357888899886544
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.082 Score=60.50 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||+|||+|-.|+.++..|+..|+ +++++|-|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.062 Score=54.61 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 799999999999999999999999999999765
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.17 Score=52.02 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=58.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (521)
+||+|||+ |.+|..+...|.+. ++++. +++.+...-+. +...+ +.+.. . ..+... .+.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~----~~~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP----VSEVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC----hHHhC------ccccc-----c-CCceeecCCHHH
Confidence 48999999 99999999999877 66777 55655432111 11000 10000 0 000111 12233
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
+ .++|+||.|+|.... .++..++. ..++.+++++|...++
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3 589999999997633 34444432 4578888998876443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.39 Score=48.95 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=48.2
Q ss_pred ceEEEEEeCChhh-HHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMG-SGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG-~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
..||||||+|.++ ...+..+...+ .-|.++|+++++++...+. .|. . ...++++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~-~-----------~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI-A-----------KAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC-C-----------cccCCHH
Confidence 5799999998554 55777777765 3577889999987664321 111 0 1344554
Q ss_pred c-c--cCCCEEEEecccchhh
Q 009963 223 S-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 223 ~-~--~~aDlVIeav~e~~~~ 240 (521)
+ + .+.|+|+.|+|.+...
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH
Confidence 4 3 3479999999988764
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.7 Score=49.50 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 5899999999999999999999999999998753
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.21 Score=49.08 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=40.8
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (521)
..+++.|-|+ +-+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888898 8999999999999999999999999999987665543
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.47 E-value=2 Score=42.94 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
..++|.|+|..|.+.++....+|. .++.+|+|+++.+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 579999999999999999888886 8999999999988865
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.079 Score=54.85 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=30.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999999875
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.075 Score=55.52 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=32.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+|.|||+|..|...|..|+++|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5899999999999999999999999999999865
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.079 Score=54.86 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998875
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.33 Score=45.26 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cC----
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD---- 220 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (521)
++|.|||-+ ..|..+|..|.+.|..|+++|.+--.+-. +.+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 689999985 56999999999999999999876532210 00000 00001 11
Q ss_pred c-ccccCCCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+ +.+++||+||.|++-..- ++.+ .+++++++++......
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~~d 160 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASIKN 160 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCCcC
Confidence 2 347899999999975543 4444 4679999987766543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.083 Score=54.78 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999853
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.21 Score=49.50 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.7
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-|. .|..+|..|.+.|..|+++......+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999875422111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999943222222 4678999987654
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.3 Score=49.34 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=58.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.+|||+|+ |..|.-+...|....++ +.++-....+=++. .+.+.- ...-...+.+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~-------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGK-------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCc-------cccCccccccccc
Confidence 58999988 99999999999987553 33333322221110 000000 0000111234456
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
++++|+|+.|.+.+.. +++..++. ..+++++||+|....
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm 102 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRM 102 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCccccc
Confidence 7899999999987644 45555443 457999999997644
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.24 Score=48.82 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.2
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6788876 8999999999999999999999998776554
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.092 Score=54.38 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=32.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.++|.|||+|.-|...|..|++.|++|+++|++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998764
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.41 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=59.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC---C----CcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS---N----YPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~---G----~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
-+|.|-|+ |.+|-++...+++. | +.+.|+|+ +.+.++.-.-.+.+..- ..+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 47999988 88888888888764 4 25788999 56665443322222110 11122222
Q ss_pred -ccCcccccCCCEEEEecc--c------------chhhHHHHHHHHHhhCCC-CceEEecC
Q 009963 218 -VLDYESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPP-HCILASNT 262 (521)
Q Consensus 218 -~~~~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~-~~il~snt 262 (521)
+.+++++++||+||.+.- . +..+-+.+...|.++.++ ..|++..|
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 456789999999998752 1 122333444556776662 44554433
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.21 Score=49.56 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=53.2
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+. .|..+|..|.+.|..|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999884322111 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|+.-..-++. ..+++++++++..++
T Consensus 208 ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIKA-------DMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccCH-------HHcCCCcEEEEeccc
Confidence 9999998743322222 257899998876653
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.16 Score=51.75 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILS-N-YPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+ |.||+.++..|+.+ | .++++++++++++...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 58999999 89999999999854 5 5899999998876653
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.081 Score=59.47 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.11 Score=54.24 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=32.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999999864
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.22 Score=49.96 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.21 Score=48.92 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=34.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45777777 78999999999999999999999998776544
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.11 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=32.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
..+|+|||+|.+|.+.|..|++.|.+|+++|.+.-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999998764
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.45 Score=47.43 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=53.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||+|||+|.||...+..+.+ .++++ .++|+++++...... .+.|.- ....+++. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi~------------~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGVK------------TSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCCC------------EEECCHHHHh
Confidence 389999999999988776664 45665 467888875321110 112211 11223333 2
Q ss_pred --cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.+.|+|+.|.|..... +.. ...+..+..+.++++.
T Consensus 61 ~~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekPa 97 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTPA 97 (285)
T ss_pred cCCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCcc
Confidence 4689999999977542 222 2233456666666643
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.51 Score=51.42 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+.|.|.|+ |.+|..++..|++.|++|++++++.+.++....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999988765443
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.21 Score=49.47 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..++..|++.|++|+++|++.+.++...
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987766543
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.26 Score=49.82 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56888887 889999999999999999999999887765443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.2 Score=48.84 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 57899988 999999999999999999999999876554
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.27 Score=49.24 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=72.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++||+|.|.+|+..|.++-.-|..|+.||.- +.....+ .| +...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~g-------------vq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------FG-------------VQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------cc-------------ceeeeHHHHHhh
Confidence 68999999999999999998889999999864 3322211 12 111222245788
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcCCCceeec
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYSKDRIVGA 283 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~~~r~ig~ 283 (521)
||+|-.=+|-.++.++-+-.+....|+++.-++ |+|- ++...+-..+. ...+-|.
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~-sG~vaGa 258 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD-SGQVAGA 258 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh-cCcccce
Confidence 999999888888776666566667788887664 5553 45555655553 2344444
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.11 Score=54.27 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|..|.+.|..|++.|++|+++|+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998764
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.11 Score=54.25 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++. |++|+++|++.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999875
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.13 Score=53.09 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.+.|..|++.|++|+++|.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999864
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.12 Score=54.51 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||+|..|...|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997665
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.13 Score=54.03 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=31.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999996443
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.11 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=32.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||.|||+|.-|...|..|+++|++|.++|+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.5 Score=46.79 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
||.|||.|..|.+.|..|.+.|++|.++|.++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.3 Score=48.08 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 47888887 8999999999999999999999999887654
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.13 Score=54.25 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999864
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.4 Score=46.96 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.0
Q ss_pred EEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||.|..|.+ +|..|.+.|++|+++|.+..
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~ 34 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN 34 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc
Confidence 4789999999998 99999999999999998764
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.4 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.120 Sum_probs=58.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HH---HHHh-hhccccc-ccCc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QE---KFEK-TISLLTG-VLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~---~~~~-~~~~i~~-~~~~ 221 (521)
.+|-++|+|. +.-|..|+.+|++|+.+|.++.+++.+.+. .+... .. .... .-.+++. ..|+
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAE----------NGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHH----------cCCCcceeccccceeeecCceEEEEccC
Confidence 4899999997 356777899999999999999999864321 11100 00 0000 0011211 1122
Q ss_pred cc-----ccCCCEEEEec---ccchhhHHHHHHHHHhhCCCCce
Q 009963 222 ES-----FKDVDMVIEAI---IENVSLKQQIFADLEKYCPPHCI 257 (521)
Q Consensus 222 ~~-----~~~aDlVIeav---~e~~~~k~~v~~~l~~~~~~~~i 257 (521)
.. ...-|.|+++. .-.++.....++.+.+.++|+..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 11 22358888753 12345567788999999999863
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.32 Score=47.47 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 36888887 78999999999999999999999988776544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.18 Score=51.66 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPV---ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 222 (521)
+||+|||+ |..|..+...|.++||++ ....++.+.-+... + .| ..+... .+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~------~-----~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS------F-----KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee------e-----CC-----------ceeEEeeCCHH
Confidence 58999998 999999999999988864 55544433211100 0 01 011111 1113
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
.+.++|+||.|+|... -+++..++ +..++++++++|....
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRM 99 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhc
Confidence 4578999999998653 34444443 3457788888876543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.11 Score=54.55 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.+|..|+..|+ +++++|-+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 479999999999999999999998 799999764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.18 Score=56.40 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||+|||+|-.|+.++..|++.|+ +++++|-|.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 489999999999999999999998 788888763
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.3 Score=43.88 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.. |++.|+++++++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 4789999999999999888888987 88889998887654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.15 Score=55.90 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++.|++|+++|.+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999863
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.34 Score=47.99 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=51.6
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..+|..|.++|..|+++......+. +.+++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~ 200 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK 200 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 589999997 8899999999999999998753221111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 201 ADIvV~AvGkp~~i~~-------~~vk~gavvIDvG 229 (281)
T PRK14183 201 ADIVIVGVGKPNLITE-------DMVKEGAIVIDIG 229 (281)
T ss_pred CCEEEEecCcccccCH-------HHcCCCcEEEEee
Confidence 9999999954322322 3578899987654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.24 Score=48.21 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=33.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~ 42 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAF 42 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46888887 8999999999999999999999998776543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.15 Score=53.29 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 479999999999999999999999999999875
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.6 Score=43.63 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|+|+|-+|+.||..|+.+|. +++++|-+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 589999999999999999999998 799999764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.84 Score=38.05 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=61.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc---
Q 009963 148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY--- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 221 (521)
.+|.-||+|+ | .++..+++ .|.+|+.+|.+++.++.+.+++.. .+. ..++.+. .+.
T Consensus 3 ~~vLDlGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT-G-RLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGL---------SDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT-S-HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTT---------TTTEEEEESCCHGG
T ss_pred CEEEEEcCcC-C-HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCC---------CCCeEEEECccccC
Confidence 4788999987 3 33344445 899999999999999988765411 110 1222221 122
Q ss_pred -ccccCCCEEEEec-----ccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 222 -ESFKDVDMVIEAI-----IENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 222 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+.....|+|+..- .-..+..+.+++.+.+.++|+.+++.+
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3345689998766 222245678889999999888776543
|
... |
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.34 Score=47.77 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=33.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+++.|.|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778876 8999999999999999999999998766543
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.17 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.41 Score=46.14 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=34.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 57888886 9999999999999999999999998876553
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.27 Score=47.98 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+.+.|.|++ -+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 467777885 799999999999999999999884
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.14 Score=52.97 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 78999999999999999999999999999975
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.79 Score=45.34 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=71.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC----CC-------cEEEEeCCH----H--HHHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 009963 148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVNE----K--FLEAGIGRVRANLQSRVKKGKMTQEKFEK 210 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~----G~-------~V~l~d~~~----~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~ 210 (521)
.||.|+|+|.-|.+||..+... |. +++++|++- + .+... ...| .+...
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~----~~~~---a~~~~-------- 90 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPF----KKPF---ARKDE-------- 90 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHH----HHHH---HhhcC--------
Confidence 5899999999999999988776 87 788989862 1 11111 1111 11100
Q ss_pred hhcccccccCc-cccc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEE-ecCCc---CcHHHHHHhhcCCCceeec
Q 009963 211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTST---IDLNLIGERTYSKDRIVGA 283 (521)
Q Consensus 211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~---l~i~~ia~~~~~~~r~ig~ 283 (521)
. ....++ +.++ ++|++|=+--..-.+.+++++...+++..-.|++ ||-.. ...++..+...-..-|...
T Consensus 91 ---~-~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG 166 (279)
T cd05312 91 ---E-KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG 166 (279)
T ss_pred ---c-ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence 0 011233 4466 7888886542223467888888888776666664 66433 4455555543212123333
Q ss_pred ccccccC
Q 009963 284 HFFSPAH 290 (521)
Q Consensus 284 hf~~P~~ 290 (521)
-||.|+.
T Consensus 167 sPf~pv~ 173 (279)
T cd05312 167 SPFPPVE 173 (279)
T ss_pred CCCCCee
Confidence 5777664
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.19 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|+|+ |.+|..++..|++.|++|++++++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 37899986 999999999999999999999998764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.18 Score=52.75 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
..|.|||+|..|...|..|+++|++|+++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.55 Score=46.67 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=52.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||- ...|..+|..|.+.|..|++++.....+. +.+++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ 201 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence 68999998 67799999999999999999864332211 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
||+||.|+.-..-++. +.+++++++++...
T Consensus 202 ADIvI~AvG~p~~i~~-------~~ik~gavVIDvGi 231 (284)
T PRK14190 202 ADILIVAVGKPKLITA-------DMVKEGAVVIDVGV 231 (284)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCCEEEEeec
Confidence 9999999954432322 34689999887543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.91 Score=45.73 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.+ |.+.|.++++++.+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 3689999999999888877778986 66778888776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 521 | ||||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 0.0 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 6e-58 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 2e-55 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 2e-55 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 2e-55 | ||
| 1zcj_A | 463 | Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas | 4e-46 | ||
| 3k6j_A | 460 | Crystal Structure Of The Dehydrogenase Part Of Mult | 2e-41 | ||
| 3mog_A | 483 | Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge | 3e-39 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 2e-38 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 2e-38 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 5e-38 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 5e-38 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 5e-38 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 6e-38 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 7e-38 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 9e-38 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 1e-37 | ||
| 3rqs_A | 324 | Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh | 3e-29 | ||
| 2hdh_A | 293 | Biochemical Characterization And Structure Determin | 4e-28 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 8e-21 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 2e-17 | ||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 9e-13 | ||
| 3ado_A | 319 | Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr | 3e-11 |
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463 | Back alignment and structure |
|
| >pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460 | Back alignment and structure |
|
| >pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324 | Back alignment and structure |
|
| >pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 521 | |||
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 0.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 0.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 0.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 1e-154 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 1e-145 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 2e-88 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 3e-27 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 2e-86 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 8e-77 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 3e-69 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 1e-11 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 7e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 3e-07 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 8e-07 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 8e-07 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 1e-06 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 1e-06 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 1e-06 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 2e-06 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 2e-06 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 2e-06 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 2e-06 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 2e-06 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 3e-06 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 4e-06 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 5e-06 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 5e-06 | |
| 3t3w_A | 279 | Probable enoyl-COA hydratase; ssgcid, structural g | 5e-06 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 5e-06 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 6e-06 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 6e-06 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 6e-06 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 6e-06 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 6e-06 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 7e-06 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 7e-06 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 7e-06 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 7e-06 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 7e-06 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 8e-06 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 8e-06 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 8e-06 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 9e-06 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 1e-05 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 1e-05 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 1e-05 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 1e-05 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 1e-05 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 2e-05 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 2e-05 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 2e-05 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 2e-05 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 3e-05 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 3e-05 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 3e-05 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 3e-05 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 3e-05 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 4e-05 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 5e-05 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 7e-05 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 8e-05 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 9e-05 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 9e-05 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 1e-04 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 1e-04 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 1e-04 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 1e-04 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 1e-04 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 2e-04 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 3e-04 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 6e-04 |
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 607 bits (1568), Expect = 0.0
Identities = 360/471 (76%), Positives = 415/471 (88%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWV 471
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK+ + + + V
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVV 636
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 560 bits (1446), Expect = 0.0
Identities = 146/468 (31%), Positives = 226/468 (48%), Gaps = 14/468 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
+ + K + E+A + VDAVV ++L + A + + A + K+E L
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA--KRQPKLEKLK 224
Query: 61 ----EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
E F+ A+ QA PN P+ I ++ G L+ EA F KL ++
Sbjct: 225 LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284
Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
L+ +F + K V D + VK+ A+LG G+MG GIA P+++
Sbjct: 285 SASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342
Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
K++NE +E G+ L RV KG+MT K + ++ + L Y F +VD+V+EA++
Sbjct: 343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402
Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
EN +KQ + A++E + ILASNTSTI ++L+ + + VG HFF+P H+MPL+
Sbjct: 403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462
Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
E++R ++S + + KK+ K PIVV +C GF VNR+ FPY LV G D
Sbjct: 463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522
Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK--SMIIPIMQEDKRAG 413
ID+ + KFG PMGP L D+VG E FP+R I + E KR G
Sbjct: 523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582
Query: 414 ETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGV---AIDPKVLQSR 458
+ KGFY Y+ +K V + + + + + +
Sbjct: 583 QKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQRDVTDEDIINW 630
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 542 bits (1398), Expect = 0.0
Identities = 143/480 (29%), Positives = 232/480 (48%), Gaps = 30/480 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL---VSTARQWALDILEHRRPWVATLYKTDKIE 57
++ + K + +EA LG++DAVV + + + A++ +E RR + +
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIF------NKPVP 223
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
L +F A A+ RKQ P + P C+ ++A V G+++E + F L S
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQ 283
Query: 118 CKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
K+L + FFA++ +K G + + + V V +LG G MG GIA + V+
Sbjct: 284 AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 343
Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
E + K L+A + L+ + + L + VD+V+EA+
Sbjct: 344 AVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAV 401
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
LE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G+
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKSMII 403
+D + +FG MGPFR++DL G V TG P R + S +
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581
Query: 404 PIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVA---IDPKVLQSR 458
++ E R G+ T KG+Y YD+ R PDP + F+ + R + + I + + R
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILER 641
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-154
Identities = 114/363 (31%), Positives = 178/363 (49%), Gaps = 21/363 (5%)
Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
S K+L + FFA++ +K G + + + V V +LG G MG GIA +
Sbjct: 2 SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
V+ E + K L+A + L+ + + L + VD+V+
Sbjct: 62 SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVV 119
Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
EA+ E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHV
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHV 179
Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
M LLE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G
Sbjct: 180 MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG 239
Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKS 400
+ +D + +FG MGPFR++DL G V TG P R + S
Sbjct: 240 SKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYS 299
Query: 401 MIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVA---IDPKVL 455
+ ++ E R G+ T KG+Y YD+ R PDP + F+ + R + + I + +
Sbjct: 300 PLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEI 359
Query: 456 QSR 458
R
Sbjct: 360 LER 362
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-145
Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 15/355 (4%)
Query: 101 GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGL----APRRVKKVAILGGG 156
+ L + + ++ A + D G V VAI+GGG
Sbjct: 4 HHHHHHHSTGENLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGG 63
Query: 157 LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216
MG +A L+ L NE+ + + + ++ ++ EK + L
Sbjct: 64 TMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKINANLK 120
Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
D+ + D+++E++IE++ LK+++FA+LE C CI +NTS++DLN I
Sbjct: 121 ITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRD 180
Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
+VG HFF+PA+V+ L+EI+ + TS Q I + IKK P++VGNC F NR+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240
Query: 337 FFPYT-QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 395
Y Q+ L+ E G + ID+ IT FG MGP +AD+ GF V +
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKEN------ 294
Query: 396 RTYKSMIIPIMQEDKRAGETTRKGFYLYDE-RRKASPDPEVKKFIEKARSMSGVA 449
+ I M KR G T KGFY YD+ ++ D E+++ I + +
Sbjct: 295 GLEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSN 349
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 2e-88
Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 12/296 (4%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
V+ VA++G G MG+GIA + V+L +++ + L I + A L SRV +GK+T E
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
E+T+ L V D + D+VIEA E + +K+ +FA L + CPP +L +NTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ I + +R+ G HFF+PA VM L+E+V T+ +V+ L ++ K P+
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGV-- 381
+ GF VNR+ PY ++A L E+ +ID A+ + G PMGP L DL+G V
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAAL-RDGAGFPMGPLELTDLIGQDVNF 243
Query: 382 AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASPDPE 434
A+ + F + ER + + QE G +K G Y + R+A E
Sbjct: 244 AVTCSV-FNAFWQERRFLPS--LVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLE 296
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 26/218 (11%)
Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
GV D+ + ++ + +EA+ + ++ + +L T + R
Sbjct: 281 GVYDWRAEREAVVGLEAV-SDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLAR 339
Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
++ ++ I + ++ KT + + + G + R
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393
Query: 337 FFPYTQAAFLLVERGT----DLYLIDRAITKFGM--PMGPFRLADLVGFGV--AIATGMQ 388
A +++G D ID A+ + G+ P GP +G+ + +Q
Sbjct: 394 VAMIINEALDALQKGVASEQD---IDTAM-RLGVNYPYGPLAWGAQLGWQRILRLLENLQ 449
Query: 389 FIENFPERTYKSMIIPIMQEDK--RAGETTRKGFYLYD 424
++ E Y+ ++++ +G + G + +
Sbjct: 450 --HHYGEERYRPC--SLLRQRALLESGYESE-GHHHHH 482
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 267 bits (686), Expect = 2e-86
Identities = 101/298 (33%), Positives = 145/298 (48%), Gaps = 24/298 (8%)
Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70
Query: 202 ----KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC 256
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H
Sbjct: 71 AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130
Query: 257 ILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316
I ASNTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190
Query: 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAITKFGM--PMGP 370
+ K P+ + GF VNR+ PY A L ERG D ID A+ K G PMGP
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKED---IDTAM-KLGAGYPMGP 246
Query: 371 FRLADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
F L D VG I G + ++ P + + + +K GFY Y
Sbjct: 247 FELLDYVGLDTTKFIVDGW-HEMDAENPLHQP--SPSLNKLVAENKFGKKTGEGFYKY 301
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 8e-77
Identities = 85/311 (27%), Positives = 138/311 (44%), Gaps = 31/311 (9%)
Query: 138 TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR 197
+D KV ++G GLMG GIA A+ S + V+L++V+EK LEA ++ L S+
Sbjct: 3 SDKIHHHHHHMKVFVIGAGLMGRGIAIAI-ASKHEVVLQDVSEKALEAAREQIPEELLSK 61
Query: 198 VKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCI 257
+ E KD D+V+EA+ E+++ K ++ ++E+ +
Sbjct: 62 -----------------IEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102
Query: 258 LASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317
L SNTS I ++ I ER S R +G H+ +P HVMPL+EIV + T + + + ++
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162
Query: 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGM---PMGPFRL 373
+ K +V VNR A ++E G +DR G+ GP
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220
Query: 374 ADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKAS 430
D +G VA + + F + +K +QE + GE K G Y Y +
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKP--PEWLQEKIKKGEVGVKAGKGIYEYGPKAYEE 278
Query: 431 PDPEVKKFIEK 441
+KK +
Sbjct: 279 RVERLKKLLRF 289
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA-------TLYKT 53
+ V+GE A + LVD VV PNQ + AL++ + +T
Sbjct: 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERT 257
Query: 54 DKIEPLGEAREIFKFAR----AQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDF 109
D+ + L R A +AP P +V AG P +E +D
Sbjct: 258 DREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316
Query: 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDL 140
+R+ +F + +
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARHLLAADAS 347
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-11
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%)
Query: 315 GKKIKKTPIVVGNCTGFAVN--RMFFPYTQAAFLLVERGT----DLYLIDRAITKFGM-- 366
G + P + + +N F A LVE G D ID AI K G+
Sbjct: 1 GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQD---IDTAI-KLGLNR 55
Query: 367 PMGPFRLADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK 418
P GPF LA G + + F ++ ++ ++E K
Sbjct: 56 PFGPFELAKQFGAEQIAKRLEELA--KQFGKKIFEP--AKTLKEGKLEELLKAG 105
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 67/532 (12%), Positives = 149/532 (28%), Gaps = 185/532 (34%)
Query: 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLV--------STARQWALDILEHRRPWVATLYKT 53
+L+ + + H + DAV +L +++ ++L ++ + KT
Sbjct: 45 ILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 54 DKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
++ +P ++ + R + N +V R + ++ L
Sbjct: 101 EQRQPSMM-TRMY----IEQRDRLYNDNQVFAKYNV--------SR---LQPYLKLRQAL 144
Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG--IATALILSNY 171
L R K V I G GSG + +Y
Sbjct: 145 -----LEL-----------------------RPAKNVLIDGVL--GSGKTWVALDVCLSY 174
Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
V Q K + I L K+ +
Sbjct: 175 KV-------------------------------QCKMDFKIFWLN-------LKNCN-SP 195
Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
E ++E + Q++ ++ P + ++S I L + + + S +
Sbjct: 196 ETVLEML---QKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR-----LLKSKPYE 244
Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
LL ++ N + + + ++ KI ++ T F FL
Sbjct: 245 NCLL-VLL-NVQNAKAW-NAFNLSCKI----LLT---TRFKQV--------TDFLSAATT 286
Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK------SMIIPI 405
T + L + M + P + L + + ++ P S+I
Sbjct: 287 THISLDHHS-----MTLTPDEVKSL----LLKYLDCR-PQDLPREVLTTNPRRLSIIAES 336
Query: 406 MQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSR--QLTL- 462
+++ + + K + S ++P + +L++
Sbjct: 337 IRDGL-----ATWDNWKHVNCDK----------LTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 463 ---------TLRLLWAWVFHLTGEE------SCSGLTLLDR----STFT-HD 494
L L+W F + + +L+++ ST +
Sbjct: 382 PPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 60/440 (13%), Positives = 121/440 (27%), Gaps = 147/440 (33%)
Query: 58 PLGEAREIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
+ + + R K N L +V ++V A A +
Sbjct: 226 RIHSIQA--ELRRLLKSKPYENCL---LVLLNVQNAKAW---------NAFNLS------ 265
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAI--LGGGLMGSGIATALILSNY--- 171
CK L+ T++ VTD L+ +++ L +L Y
Sbjct: 266 -CKILL--------TTRFKQVTDF-LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDC 313
Query: 172 -----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLD----- 220
P + N + I + + K +K I VL+
Sbjct: 314 RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 221 --YESF----KDVD---MVIE----AIIENVSLKQQIFADLEKYCPPHCILA-----SNT 262
++ +++ +I++ + L KY L +T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYS-----LVEKQPKEST 425
Query: 263 STI-DL----------------NLIGE----RTYSKDRIVGAH----FFSPAHV---MPL 294
+I + +++ +T+ D ++ + F+S H+ +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGHHLKN 483
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
+E V +D + +KI+ N +G +N L L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILN-----------TL----QQL 527
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKS-----MIIPIMQED 409
I P + + + F+ E S + I +M ED
Sbjct: 528 KFYKPYICD-NDPKYERLVNAI----------LDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 410 KRAGETTRKGFYLYDERRKA 429
+ +++E K
Sbjct: 577 E----------AIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 7e-06
Identities = 57/374 (15%), Positives = 111/374 (29%), Gaps = 115/374 (30%)
Query: 216 TGVLDYESFKDVDMV-IEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT 274
TG Y +KD+ V +A ++N K D++ P IL+ ID ++I
Sbjct: 11 TGEHQY-QYKDILSVFEDAFVDNFDCK-----DVQDM--PKSILSK--EEID-HIIMS-- 57
Query: 275 YSKDRIVGAHFFSPAHVMPLLEIVRTNQTS--PQVIVDLLD-----IGKKIKKTPIVVGN 327
KD + G L + + Q + + ++L + IK
Sbjct: 58 --KDAVSGTLR--------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 328 CTG---------FAVNRMFFPYTQAAFLLVERGTDLYLIDRAITK---------FGMP-M 368
T + N++F Y V R + +A+ + G+
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 369 G----------PFRLADLVGFGVA-IATG----------------MQFIENFPERTYKSM 401
G +++ + F + + Q N+ R+ S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 402 IIPIMQEDKRAGETTRKGFYLYDERRKAS-------PDPEV-KKFIEKARSMSGVAIDPK 453
I + +A L + + + + F + K
Sbjct: 222 NIKLRIHSIQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCK 267
Query: 454 VL-QSRQLTLTLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNG-------QACTGNF 505
+L +R +T L A H++ + LT + + + + + T N
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 506 LSHVLSWLKELARE 519
LS + E R+
Sbjct: 328 R--RLSIIAESIRD 339
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+K GE A + G +D + P ++S A + A +
Sbjct: 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL 200
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ ++ E A + G +D VV+ +L A A + +
Sbjct: 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI 200
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ EA +G+VD VV Q+ STA +
Sbjct: 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M +T + + +EA +GLV+ V + R++A +
Sbjct: 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
MMLTS P+ G EA GLV+ V A + + A I
Sbjct: 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
++LT + A GL + + +++ A + A DI + P
Sbjct: 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAP 206
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ + + EEA +LGL+D +VAP+ + +A WA LE
Sbjct: 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++T K G++A +GLV+ V QL + A ++LE
Sbjct: 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
++L+ + EEA LGLV VV P QL+ A ++A DI + P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T + + +EA GLV+ VV + L A + A I +
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M+ T + +G+E G+ VV+ +++ A+Q I
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
+ML E+ +GLVD VV Q V+ Q
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 4e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ T + +EA LG+V+ VV+P L+ + A + E
Sbjct: 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
MMLT + E G ++ A + + ++
Sbjct: 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++L + + +E + LVD VV P++L + + +
Sbjct: 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGD 388
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T + + EE G+V+ VV ++L + R A +I +
Sbjct: 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+LTS + A G V+ V +L A +
Sbjct: 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + + EA GLV VV + L++ AR A I +
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 36/116 (31%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
MLT+ EAH +G+V +V + V TA A I PLG
Sbjct: 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQ--------------APLG 211
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
QA + V G A ++ ++L SE
Sbjct: 212 ----------VQATLRN------------ARLAVREGDAAAEEQLVPTVRELFTSE 245
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + E+ H +G V+AV +L + QWA +I
Sbjct: 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ +++ +EA +G V A Q + A
Sbjct: 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT +PV EA +GLV+ VVA Q A A +I
Sbjct: 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF 206
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT+ E A S G ++ + ++L + A +I
Sbjct: 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAAL 212
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT +P+ A GL++ VV ++ A A I +
Sbjct: 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+ T + + ++A+ L +V V+ ++L+ A + A +
Sbjct: 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTL 219
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+MLT + V +EA +GLV VA L+ I
Sbjct: 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGF 229
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 7e-06
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + E+A G ++ +V Q + TA + A I +
Sbjct: 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + + EEA +GLV +V L+ A A I
Sbjct: 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-06
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
M+LT + ++A GLV + LV A Q A I + + VA
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 208
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + +EA +GLV+ VV ++ QW +I++H
Sbjct: 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-06
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ + + LV+ VV + L+ A A + +
Sbjct: 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M LT + ++A GLV VVA + L++ AR+ A I+ +
Sbjct: 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + +EA +G+V+ VV ++L QWA +IL
Sbjct: 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSK 214
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ LT + E AH+LG+V+ + P + A A I +
Sbjct: 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + + EA +GLV VV Q ++ A + A I +
Sbjct: 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT +EA + L+ VV P + ++ A ++A I
Sbjct: 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI 207
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
+ + ++A +GLV+ VV L +W ++L++
Sbjct: 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++ T+ P+ + A ++G+++ VV +L Q A I E
Sbjct: 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT + + GEEA +GLV V ++++ TA + A ++
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
++LT + V+ EA +LGLV+ + P + + A+ A ++ ++
Sbjct: 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+LT + + A G V+ V++ +L+ A + A I
Sbjct: 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGI 210
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M++ K + EA + GLV V +
Sbjct: 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M+LT +P+ EA+ GLV VV + AR A I+ +
Sbjct: 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+L ++P+ GEEA LGLV V ++ A + A +
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++++S+ + EEA +GLV + +P +L+ AR+ A +
Sbjct: 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEIL 201
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++ T + G +A GL P L + + I
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERI 256
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
+ ++++ A+SL LV V + L+ ++A I
Sbjct: 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN 202
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M LT + A + GL++ ++ L + A +
Sbjct: 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGAL 205
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M+L+ + + +EA GLV V P ++
Sbjct: 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+ + + V EEA +LGL V+ + +Q+A +
Sbjct: 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
+++ V+ EA +GL+ + + AR A + + P +A
Sbjct: 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLAD--GPALA 223
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
M++ + + EA + GLV V ++
Sbjct: 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++ +++ + G+EA ++GL+ V+ NQ A + ALD+
Sbjct: 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDL 207
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
M +T++ + A G++ + + ++ S
Sbjct: 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1 MMLT--SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
M L + + + A+ LGL+ +V ++L+ A + A + +
Sbjct: 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN 216
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
M++T + V ++A LGLV+ VVAP L I+ R VA
Sbjct: 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
+MLT++ + EEA GLV V ++ A + A ++
Sbjct: 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
M+ T +P+ +EA GL+ VV +L + A I RP V+
Sbjct: 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS 236
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 100.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 100.0 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.92 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.92 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.87 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.8 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.79 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.75 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.74 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.72 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.71 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.69 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.68 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.68 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.67 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.66 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.66 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.66 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.65 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.64 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.63 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.62 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.62 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.6 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.58 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.57 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.57 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.57 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.56 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.56 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.56 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.55 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.55 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.55 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.55 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.53 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.52 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.52 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.51 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.5 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.48 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.48 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.48 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.47 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.47 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.47 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.46 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.46 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.46 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.45 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.44 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.43 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.43 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.43 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.42 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.42 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 99.41 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 99.41 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.4 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.4 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.4 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 99.39 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.38 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.38 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.37 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.37 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.37 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.36 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.36 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.36 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 99.35 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 99.35 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 99.34 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 99.34 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.34 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 99.33 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 99.33 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 99.32 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 99.32 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 99.32 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 99.32 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 99.32 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 99.31 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 99.3 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 99.3 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 99.3 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.3 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 99.29 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 99.28 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 99.28 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 99.28 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 99.28 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 99.28 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 99.28 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.27 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 99.26 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 99.26 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 99.25 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 99.25 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 99.25 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 99.24 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.23 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 99.23 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 99.23 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 99.22 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.21 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 99.21 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 99.21 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 99.21 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 99.2 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.19 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 99.19 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 99.18 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 99.17 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 99.17 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 99.17 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.16 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 99.16 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.16 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 99.15 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 99.15 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.15 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.14 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 99.14 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.14 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 99.14 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.14 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.14 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.13 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.13 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 99.12 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 99.12 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 99.12 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 99.11 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.1 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.1 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.1 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 99.09 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 99.09 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 99.09 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.07 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 99.07 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 99.06 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.06 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 99.04 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 99.03 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 99.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 98.99 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.52 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 98.96 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.95 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 98.95 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 98.93 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.92 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.9 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.89 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.88 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.88 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.87 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.86 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.85 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 98.85 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 98.85 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.84 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.84 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.82 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 98.82 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 98.81 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.81 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 98.79 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 98.79 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.78 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.78 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.78 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.77 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.69 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.64 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 98.64 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.59 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.58 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 98.57 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.57 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 98.55 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.55 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.53 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.52 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.52 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 98.48 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.43 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.42 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.42 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.41 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.41 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.41 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.4 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.39 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 98.38 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.37 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.35 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.35 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.33 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.33 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.32 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.32 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.31 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.31 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.31 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.3 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.3 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.3 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.28 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.28 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.27 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.26 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 98.25 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.21 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.21 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.21 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.21 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.2 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.18 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.18 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.17 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.16 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.15 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.15 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.13 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.12 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.01 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.99 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.98 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.97 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.93 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.89 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.88 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.87 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.86 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.85 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.84 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.83 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.8 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.76 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.74 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.73 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.72 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.71 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.7 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.7 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.69 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.68 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.59 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.59 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.55 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.54 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.53 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.5 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.49 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.48 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.45 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.41 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.4 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.39 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.38 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.37 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.36 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.32 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.31 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.29 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.29 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.29 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.29 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.29 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.27 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.26 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.23 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.22 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.22 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.2 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.19 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.19 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.18 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.18 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.17 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.16 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.16 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.15 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.14 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.13 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.13 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.12 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.11 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.1 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.1 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.07 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.06 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.05 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.04 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.02 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.01 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 97.0 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.98 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.96 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.95 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.92 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.89 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.88 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.87 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.84 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.81 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.79 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.78 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.7 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.69 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.69 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.68 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.68 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.68 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.67 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.64 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.64 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.57 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.57 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.55 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.53 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.52 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.51 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.48 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.48 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.46 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.46 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.46 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.45 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.45 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.41 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.4 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.38 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.32 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.25 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.24 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.19 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.15 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.11 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.0 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.99 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.98 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.95 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.95 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.93 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.93 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 95.9 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.88 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.86 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.83 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.78 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.77 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.76 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.73 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.72 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.71 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.68 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.67 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.62 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.61 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 95.55 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.55 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.51 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.49 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.47 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.44 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.34 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.28 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.2 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.19 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.16 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.15 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.14 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.12 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.01 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.01 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 94.97 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 94.91 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.82 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.82 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.81 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 94.69 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.61 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.61 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 94.6 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.58 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 94.56 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.55 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.54 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 94.54 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 94.5 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 94.45 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 94.45 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 94.37 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 94.36 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.33 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 94.32 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.28 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 94.26 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.26 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.21 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.15 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.12 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 94.1 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 94.01 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 93.99 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 93.97 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.97 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 93.93 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 93.93 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 93.89 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 93.87 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.84 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.8 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 93.79 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 93.75 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.75 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 93.75 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 93.71 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 93.71 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 93.69 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 93.67 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 93.66 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.65 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.64 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 93.63 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 93.62 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.56 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.53 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.53 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 93.51 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.5 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.44 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 93.44 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.41 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 93.37 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.36 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.36 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.36 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 93.34 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 93.31 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.27 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.26 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.26 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.14 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.1 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 93.1 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 93.09 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.05 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 93.05 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 93.05 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 93.03 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 93.03 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 92.92 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.81 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.81 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 92.77 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 92.74 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 92.72 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 92.7 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.67 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 92.64 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.61 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.59 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 92.56 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 92.54 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 92.54 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 92.49 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 92.47 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 92.43 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 92.41 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 92.39 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 92.38 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 92.38 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.38 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 92.35 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 92.25 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 92.24 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 92.24 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.21 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 92.19 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 92.18 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 92.13 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 92.12 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 92.08 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.03 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 92.02 |
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-97 Score=819.62 Aligned_cols=502 Identities=28% Similarity=0.423 Sum_probs=442.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|+|++ +++.|.++|++++.+ |+...................+..+.++.+++.++|
T Consensus 170 l~ltG~~i~a~eA~~~GLv~~vv~~d-~~~~A~~~A~~ia~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 246 (742)
T 3zwc_A 170 LITSGKYLSADEALRLGILDAVVKSD-PVEEAIKFAQKIIDK--PIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGV 246 (742)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEESSC-HHHHHHHHHHHHTTS--CSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCchhHHHHHHcCCccEecCch-hhHHHHHHHHHHhcC--CchhhhhhcccccccchhhhhHHHHHHHHhhhccch
Confidence 57899999999999999999999875 568899999999986 333222222222212122345566777888889999
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCC---CCCCCcccceEEEEEeCCh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVT---DLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~---~~~~~~~~~~kI~VIG~G~ 157 (521)
+||.+++++|+++...+++++++.|+++|.+|+.|+++++++++||++|+++|.+... +.+..+++|+||+|||+|+
T Consensus 247 ~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~ 326 (742)
T 3zwc_A 247 LAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGT 326 (742)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSH
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccH
Confidence 9999999999999999999999999999999999999999999999999988865431 2345677899999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||.+++.+|++|+++|++++.++++.+++.+.+++.++++..+.. .....+++++++++++++||+|||||||+
T Consensus 327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~ 404 (742)
T 3zwc_A 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFED 404 (742)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSC
T ss_pred HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEecccc
Confidence 9999999999999999999999999999999999999888877655432 23456788899999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||+++.|++++++.+.++.+.
T Consensus 405 l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~ 484 (742)
T 3zwc_A 405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKK 484 (742)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCC--
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-- 395 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~-- 395 (521)
+||+||+++|+||||+||++.++++||++++++|+++++||.+++++|||||||+++|++|||+++++++.++...++
T Consensus 485 lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~ 564 (742)
T 3zwc_A 485 IGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP 564 (742)
T ss_dssp TTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSC
T ss_pred hCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887654332
Q ss_pred ---------CCccccHHHHHHHCCCCCccCCceeeeccCC--CCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCH
Q 009963 396 ---------RTYKSMIIPIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTL 464 (521)
Q Consensus 396 ---------~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (521)
...+++++++|+++|++|+|||+|||+|+++ +...+|+++..++...+...++.+ +.++.
T Consensus 565 ~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 635 (742)
T 3zwc_A 565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ---------RTISK 635 (742)
T ss_dssp TTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCC---------CCCCH
T ss_pred ccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCc---------CCCCH
Confidence 1224689999999999999999999999753 345789999998877665444432 24899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-CccccccccccccccCcch---hHHHHHHHHHh
Q 009963 465 RLLWAWVFHLTGEESCSGLTLLDR-STFTHDWRNGQACTGNFLS---HVLSWLKELAR 518 (521)
Q Consensus 465 ~~i~~rll~~~vnea~~~l~~~~~-~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~ 518 (521)
+||.+|++++|+|||++||+++++ ++.||| .++.+|.|||. |||+|+|.+|-
T Consensus 636 ~ei~~R~l~~~~nEa~~~l~egI~~~~~diD--~a~~~G~Gfp~~~GGp~~~~D~~G~ 691 (742)
T 3zwc_A 636 EEILERCLYSLINEAFRILEEGMAARPEHID--VIYLHGYGWPRHKGGPMFYAASVGL 691 (742)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH--HHHHHHSCCCGGGCCHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCCHHHHH--HHHHhCcCCCCCcCCHHHHHHHHHH
Confidence 999999999999999999999775 689999 99999999999 99999999984
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-88 Score=752.84 Aligned_cols=510 Identities=70% Similarity=1.109 Sum_probs=427.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcc-hhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWV-ATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||++++|+||+++||||+|||+++++++|.+||++++....|+. ...+. ............+..+++++.+++++
T Consensus 166 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~g 244 (725)
T 2wtb_A 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKT-DKLPPLGEAREILTFAKAQTLKRAPN 244 (725)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCC-TTSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhc-cccCccchHHHHHHHHHHHHHHhccC
Confidence 57899999999999999999999999999999999999987533442 22110 00111112233677889999999888
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCChhh
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMG 159 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~mG 159 (521)
||||..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++....+..+++++||+|||+|.||
T Consensus 245 ~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG 324 (725)
T 2wtb_A 245 MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMG 324 (725)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECCSHHH
T ss_pred CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcCCHhh
Confidence 99999999999999999999999999999999999999999999999999999987632113345678999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccchh
Q 009963 160 SGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (521)
Q Consensus 160 ~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (521)
++||.+|+++|++|++||++++.++++.+++++.+++++++|.+++++.+...++++.+++++.+++||+|||||||+.+
T Consensus 325 ~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaVpe~~~ 404 (725)
T 2wtb_A 325 SGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENIS 404 (725)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEECCCSCHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEcCcCCHH
Confidence 99999999999999999999999999999999999999999999888888888999999999889999999999999999
Q ss_pred hHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcC
Q 009963 240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIK 319 (521)
Q Consensus 240 ~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG 319 (521)
+|+.+|+++.+.+++++||+||||+++++++++.+.+|++++|+|||+|++.|+++||++++.|++++++.+.++++.+|
T Consensus 405 vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lG 484 (725)
T 2wtb_A 405 LKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIK 484 (725)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC-Cc
Q 009963 320 KTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER-TY 398 (521)
Q Consensus 320 k~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~-~~ 398 (521)
|+|++++|++||++||++.++++|++.++++|+++++||.++.++|||||||+++|++|||+++++++.+++.++++ +.
T Consensus 485 k~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~ 564 (725)
T 2wtb_A 485 KTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYK 564 (725)
T ss_dssp CEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHSGGGCCC
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999988876 55
Q ss_pred cccHHHHHHHCCCCCccCCceeeeccCCCCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHHHHH
Q 009963 399 KSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEE 478 (521)
Q Consensus 399 ~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~vne 478 (521)
| +++++|+++|++|+|||+|||+|++.++..+|+++.+++...+...++.+.. +-+.++.++|.+|++++++||
T Consensus 565 ~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~r~l~~~~ne 638 (725)
T 2wtb_A 565 S-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDP-----KLANLSEKDIIEMTFFPVVNE 638 (725)
T ss_dssp C-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCC-----TTTTCCHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchh-----hcccCCHHHHHHHHHHHHHHH
Confidence 6 8999999999999999999999963222346777766655433211210000 011378999999999999999
Q ss_pred HHHHhhcccc-CccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 479 SCSGLTLLDR-STFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 479 a~~~l~~~~~-~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
|++||+++++ ++.||| .+|.+|.|||. |||+|.|.+|-.
T Consensus 639 a~~~l~egi~~~~~diD--~~~~~G~g~p~~~GGp~~~~d~~G~~ 681 (725)
T 2wtb_A 639 ACRVFAEGIAVKAADLD--IAGIMGMGFPPYRGGIMFWADSIGSK 681 (725)
T ss_dssp HHHHHHTTSSSCHHHHH--HHHHHHHCCCGGGCCHHHHHHHHCHH
T ss_pred HHHHHhcCCCCCHHHHH--HHHHhCCCCCCCCCCHHHHHHHhCHH
Confidence 9999999886 899999 99999999999 999999999853
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-88 Score=750.92 Aligned_cols=502 Identities=30% Similarity=0.463 Sum_probs=445.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhccc--CCCCCchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT--DKIEPLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||++++|+||+++||||+|||+++++++|.+||++++....||+.+.... +...+......++..+++++.++++
T Consensus 167 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~ 246 (715)
T 1wdk_A 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG 246 (715)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999999999987533443332110 0000111111246777888878754
Q ss_pred -CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
+||||..+|++++.+...+++++++.|++.|..++.|+++++++++|+++|+++|.++.+. + .+++++||+|||+|+
T Consensus 247 g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~VIGaG~ 324 (715)
T 1wdk_A 247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAVLGAGI 324 (715)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEEECCHH
T ss_pred cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEEECCCh
Confidence 7999999999999999999999999999999999999999999999999999988664221 2 356789999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||..|+++|++|++||++++.++.+..++++.+++++++|.+++++.+..+++++.+++++.+++||+|||||||+
T Consensus 325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaV~e~ 404 (715)
T 1wdk_A 325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVEN 404 (715)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEECCCSC
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999988888888999888898899999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
.++|+.+|+++.+.+++++||+||||+++++++++.+.+|++|+|+|||+|++.|+++|+++++.|++++++.+.++++.
T Consensus 405 ~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~ 484 (715)
T 1wdk_A 405 PKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK 484 (715)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT 397 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~ 397 (521)
+|++|++++|++||++||++.++++|++.++++|+++++||.++.++|||||||+++|++|||+++++++.+++.+++++
T Consensus 485 lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~ 564 (715)
T 1wdk_A 485 MGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRM 564 (715)
T ss_dssp TTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHH
T ss_pred hCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999998887766
Q ss_pred ccc--cHHHHHHHCCCCCccCCceeeecc-C--CC-CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHH
Q 009963 398 YKS--MIIPIMQEDKRAGETTRKGFYLYD-E--RR-KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWV 471 (521)
Q Consensus 398 ~~~--~~l~~~~~~G~~G~k~g~GfY~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rl 471 (521)
.++ +++++|+++|++|+|||+|||+|+ + ++ +..+|+++.+++...+. +. ..++.++|.+|+
T Consensus 565 ~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~i~~r~ 631 (715)
T 1wdk_A 565 KDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----EQ--------RDVTDEDIINWM 631 (715)
T ss_dssp CCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----CC--------CCCCHHHHHHHH
T ss_pred CCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----Cc--------cCCCHHHHHHHH
Confidence 677 899999999999999999999996 3 33 45689998888753221 01 127889999999
Q ss_pred HHHHHHHHHHHhhcccc-CccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 472 FHLTGEESCSGLTLLDR-STFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 472 l~~~vnea~~~l~~~~~-~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
+++|+|||++||+++++ ++.||| .+|.+|.|||. |||+|+|.+|-.
T Consensus 632 l~~~~nea~~~l~egi~~~~~diD--~~~~~G~g~p~~~GGp~~~~d~~G~~ 681 (715)
T 1wdk_A 632 MIPLCLETVRCLEDGIVETAAEAD--MGLVYGIGFPLFRGGALRYIDSIGVA 681 (715)
T ss_dssp HHHHHHHHHHHHHHTSSSSHHHHH--HHHHHHTCCCGGGCCHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHH--HHHHhCCCCCCCCCCHHHHHHHhCHH
Confidence 99999999999999886 899999 99999999999 999999999853
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-76 Score=619.04 Aligned_cols=375 Identities=28% Similarity=0.403 Sum_probs=334.2
Q ss_pred HHHHhhccCCC--CCCCC--CCCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 009963 123 HIFFAQRGTSK--VPGVT--DLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRV 198 (521)
Q Consensus 123 ~aF~~kr~~~k--~~~~~--~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~ 198 (521)
++|+++|..++ .|... -....+++|+||+|||+|+||++||..|+++|++|++||++++ ++..++++.+++++
T Consensus 26 ~~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~ 102 (460)
T 3k6j_A 26 YLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREK 102 (460)
T ss_dssp HHHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHH
T ss_pred HHHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHH
Confidence 45667777644 23211 1123467789999999999999999999999999999999998 56677888999999
Q ss_pred HcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCC
Q 009963 199 KKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKD 278 (521)
Q Consensus 199 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~ 278 (521)
++|.++.++.+..+++++++++++++++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+
T Consensus 103 ~~G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~ 182 (460)
T 3k6j_A 103 SFKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPS 182 (460)
T ss_dssp HTTSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGG
T ss_pred HcCCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHH-HcCCCHHHH
Q 009963 279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLI 357 (521)
Q Consensus 279 r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~-~~G~~~~~I 357 (521)
+|+|+|||+|++.|+++||+++..|++++++.+.++++.+||+|++++|+|||++||++.++++||+.++ ++|++|++|
T Consensus 183 r~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~I 262 (460)
T 3k6j_A 183 NLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQI 262 (460)
T ss_dssp GEEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred ceEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHHHHHHHCCCCCccCCceeeeccCCC-CCCCChHHH
Q 009963 358 DRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR-KASPDPEVK 436 (521)
Q Consensus 358 D~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~-~~~~~~~~~ 436 (521)
|++|+++|||||||+++|++|||+++++.+.+ + ..+++++++||++|+||+|||+|||+|++++ ++.+|+++.
T Consensus 263 D~a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~ 336 (460)
T 3k6j_A 263 DKIITNFGFLMGPMTVADMNGFDVMEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEME 336 (460)
T ss_dssp HHHHHHHTBSSCHHHHHHHHCTHHHHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHhchHHHHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHH
Confidence 99999999999999999999999999998775 1 2345899999999999999999999998755 357899999
Q ss_pred HHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHHHHHHHHHhhcccc-CccccccccccccccCcch---hHHHH
Q 009963 437 KFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEESCSGLTLLDR-STFTHDWRNGQACTGNFLS---HVLSW 512 (521)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~vnea~~~l~~~~~-~~~~~d~~~~~~~~~~~~~---~~~~~ 512 (521)
+++...+...++.++ .++++||++|++++|+|||++||+++++ ++.||| .++.+|.|||. |||.|
T Consensus 337 ~~~~~~~~~~~~~~~---------~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD--~~~~~G~GfP~~~GGp~~~ 405 (460)
T 3k6j_A 337 QIIRRVSQNAKSNIQ---------IINDQDVINFMLYPTVNEGYRCIEEGVISNESLID--IMFILGFGWPIHSGGPMRF 405 (460)
T ss_dssp HHHHHC---CCCSSC---------CCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH--HHHHHTCCCSEETTEECBC
T ss_pred HHHHHHHHhcCCCcc---------cCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhh--HHHHhcCCCCccccCHHHH
Confidence 888765443344322 3789999999999999999999999887 699999 99999999999 99888
Q ss_pred HHHHH
Q 009963 513 LKELA 517 (521)
Q Consensus 513 ~~~~~ 517 (521)
.|.+|
T Consensus 406 ~d~~G 410 (460)
T 3k6j_A 406 GKTEG 410 (460)
T ss_dssp SSCBS
T ss_pred HHHhC
Confidence 77665
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-72 Score=598.04 Aligned_cols=365 Identities=30% Similarity=0.441 Sum_probs=323.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|+||++||..|+++|++|++||+++++++++.+++.+.+++++++|.++.++.+..++++++++++++++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA 83 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+||+||||++++|+++|+++++.+++++||+||||+++++++++.+.+|.+++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~ 163 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA 163 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+++++++|+|||++||++.++++||+.++++|. ++++||++|+ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~ 243 (483)
T 3mog_A 164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNF 243 (483)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999987 8999999999 899999999999999999999
Q ss_pred HHhhHHHhhC-CCC-CccccHHHHHHHCCCCCccCCceeeeccCCCCCCC-----ChHHHHHH-----------------
Q 009963 384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASP-----DPEVKKFI----------------- 439 (521)
Q Consensus 384 ~~~~~~~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~~~-----~~~~~~~~----------------- 439 (521)
++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|++++.... ++....++
T Consensus 244 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (483)
T 3mog_A 244 AVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLI 323 (483)
T ss_dssp HHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhhc
Confidence 9999998876 343 34678999999999999999999999976432111 22211100
Q ss_pred ---------------------------------------------HHHhhccCccCChhhhhhhccCCCHHHHHHHHHHH
Q 009963 440 ---------------------------------------------EKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHL 474 (521)
Q Consensus 440 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~ 474 (521)
...-...+..|. ...-+..+|++|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~-------~~~d~~g~i~~Rll~~ 396 (483)
T 3mog_A 324 ETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVL-------QIADYPGMLIWRTVAM 396 (483)
T ss_dssp ECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEE-------ECCCCTTTTHHHHHHH
T ss_pred ccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCcee-------eecccccHHHHHHHHH
Confidence 000000111110 0012345799999999
Q ss_pred HHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 475 TGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 475 ~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
|+|||++||++|+++++||| .+|.+|.|||+|||+|+|.+|-.
T Consensus 397 ~~nEA~~~l~eGvas~~diD--~a~~~G~G~P~GPl~~~D~~Gld 439 (483)
T 3mog_A 397 IINEALDALQKGVASEQDID--TAMRLGVNYPYGPLAWGAQLGWQ 439 (483)
T ss_dssp HHHHHHHHHHTTSSCHHHHH--HHHHHHSCCSSCHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhCHH
Confidence 99999999999999999999 99999999999999999999853
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-71 Score=589.52 Aligned_cols=392 Identities=28% Similarity=0.423 Sum_probs=338.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCC---CCCCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 114 RSETCKSLVHIFFAQRGTSKVPGV---TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 114 ~s~~a~~~~~aF~~kr~~~k~~~~---~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
.|+++++++++||.+|+++|.++. ...+..+++++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+
T Consensus 1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i 80 (463)
T 1zcj_A 1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII 80 (463)
T ss_dssp -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 489999999999999999885431 11233456789999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 191 RANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
.+.++..+++|.+++.+.+....++ +++++.+++||+||+|||++.++|+.+|+++.+.+++++||+||||+++++++
T Consensus 81 ~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l 158 (463)
T 1zcj_A 81 TFTLEKEASRAHQNGQASAKPKLRF--SSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158 (463)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEE--ESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhh--cCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence 8888887777654432211222233 56677899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHc
Q 009963 271 GERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER 350 (521)
Q Consensus 271 a~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~ 350 (521)
++.+.+|++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++++++++++||++||++.++++|+++++++
T Consensus 159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~ 238 (463)
T 1zcj_A 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE 238 (463)
T ss_dssp HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHH---hhC-------CCC-CccccHHHHHHHCCCCCccCCce
Q 009963 351 GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFI---ENF-------PER-TYKSMIIPIMQEDKRAGETTRKG 419 (521)
Q Consensus 351 G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~---~~~-------~~~-~~~~~~l~~~~~~G~~G~k~g~G 419 (521)
|+++++||.+++++|+|||||+++|.+|||+++++++.+. +.+ .+. ..+++++++||++|++|+|||+|
T Consensus 239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G 318 (463)
T 1zcj_A 239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG 318 (463)
T ss_dssp TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence 9999999999999999999999999999999999998772 211 111 12368999999999999999999
Q ss_pred eeeccC-CC-CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHHHHHHHHHhhccccC-ccccccc
Q 009963 420 FYLYDE-RR-KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLTGEESCSGLTLLDRS-TFTHDWR 496 (521)
Q Consensus 420 fY~y~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~vnea~~~l~~~~~~-~~~~d~~ 496 (521)
||+|++ +. ....++++.+++.......++.+. .++..+|.+|++.+|+|||++||++|+++ +.|||
T Consensus 319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID-- 387 (463)
T 1zcj_A 319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQR---------TISKEEILERCLYSLINEAFRILEEGMAARPEHID-- 387 (463)
T ss_dssp SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHH--
T ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcc---------cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH--
Confidence 999963 32 234688888887665443333322 26789999999999999999999999994 99999
Q ss_pred cccccccCcch---hHHHHHHHHHh
Q 009963 497 NGQACTGNFLS---HVLSWLKELAR 518 (521)
Q Consensus 497 ~~~~~~~~~~~---~~~~~~~~~~~ 518 (521)
.+|.+|.|||+ |||+|+|.+|-
T Consensus 388 ~a~~~G~G~p~~~gGP~~~~D~~Gl 412 (463)
T 1zcj_A 388 VIYLHGYGWPRHKGGPMFYAASVGL 412 (463)
T ss_dssp HHHHHHSCCCGGGCCHHHHHHHHCH
T ss_pred HHHHhCCCCCCCCcChHHHHHHhCH
Confidence 99999999999 99999999984
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-60 Score=474.35 Aligned_cols=269 Identities=22% Similarity=0.340 Sum_probs=241.4
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCcc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~ 223 (521)
.+.||+|||+|+||++||.+++.+|++|+++|++++.++++.+++++.+++++++|.++.. ..+..+++++.+++++ +
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 4689999999999999999999999999999999999999999999999999999988644 4567788999999985 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+|||||||++++|+++|++|++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||+++.|
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T 164 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET 164 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv-~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~ 377 (521)
++++++.+.++++.+||+|+++ +|+||||+||++.++++||++++++|+ +++|||.+|+ ++|+| ||||+++|++
T Consensus 165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~ 244 (319)
T 3ado_A 165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN 244 (319)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence 9999999999999999999866 799999999999999999999999997 9999999999 89887 9999999999
Q ss_pred CchHHHHHhhHHHhhCCCCCccccHHHHH-HHCCCCCccCCceeeeccC
Q 009963 378 GFGVAIATGMQFIENFPERTYKSMIIPIM-QEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 378 Gld~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~~G~k~g~GfY~y~~ 425 (521)
|+|+...+.+ +. +.++.+ .+.|+.+.++|+++|+|.+
T Consensus 245 G~~~~~~~~~-~~----------~~~~~~~~~~~~~p~~~~~~~~k~~~ 282 (319)
T 3ado_A 245 AEGMLSYCDR-YS----------EGMKRVLKSFGSIPEFSGATVEKVNQ 282 (319)
T ss_dssp TTSHHHHHHH-HH----------HHHHHHHHTCCCCCCCCHHHHHHHHH
T ss_pred CccHHHHHHH-hh----------HhHHHHHHHcCcccccchHHHHHHHH
Confidence 9997655422 11 123333 3347777777777777643
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-58 Score=455.73 Aligned_cols=257 Identities=30% Similarity=0.450 Sum_probs=239.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
-+||+|||+|+||++||..|+ +|++|++||++++.++++.+. + .+..+++++++++++++++
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~~ 73 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVKD 73 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGGG
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHcC
Confidence 379999999999999999999 999999999999998887543 1 2334567777888877999
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e 306 (521)
||+|||||||+.++|+.+|++++.. +++|++|||||++++++++.+.+|.+++|+|||+|++.++++|++++..|+++
T Consensus 74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~ 151 (293)
T 1zej_A 74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK 151 (293)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence 9999999999999999999999886 89999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCc---cHHHHhhhcCchHH
Q 009963 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA 382 (521)
Q Consensus 307 ~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~ 382 (521)
+++.+.++++.+|++|++++|. |++||++.++++||+.++++|++|++||.+++ ++|+|| |||+++|++|+|++
T Consensus 152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~ 229 (293)
T 1zej_A 152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA 229 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence 9999999999999999999987 99999999999999999999999999999999 899999 99999999999999
Q ss_pred HHHhhHHHhhCCC-CCccccHHHHHHHCCCCCccCCceeeeccC
Q 009963 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 383 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
+++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence 9999999999887 455788999999999999999999999964
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=453.62 Aligned_cols=275 Identities=27% Similarity=0.413 Sum_probs=256.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhcccccccCcc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-~ 223 (521)
.++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+.+.+.+++| .++..+.+....++..+++++ .
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999888 888777777888888888885 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+||+|||+++++|+.+++++.+.+++++|++||||+++++++++.+.+|.+++|+|||+|++.++++|++++..|
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t 162 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT 162 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv-~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld 380 (521)
++++++.+.++++.+|++++++ ++.|||++||++.++++||++++++|. +|++||.+++ ++|+|||||+++|++|||
T Consensus 163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld 242 (283)
T 4e12_A 163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT 242 (283)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence 9999999999999999999999 689999999999999999999999986 9999999999 899999999999999999
Q ss_pred HHHHHhhHHHhhCCC-CCccccHHHHHHHCCCCCccCCceeeec
Q 009963 381 VAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLY 423 (521)
Q Consensus 381 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y 423 (521)
+++++++. ..++ ++.|++++++|+++|+||+|||+|||+|
T Consensus 243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y 283 (283)
T 4e12_A 243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283 (283)
T ss_dssp HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence 99999873 2222 2346788999999999999999999998
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=443.38 Aligned_cols=280 Identities=34% Similarity=0.541 Sum_probs=260.8
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-----HHHhhhccccccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-----KFEKTISLLTGVL 219 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~~~~i~~~~ 219 (521)
.+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+.++.++++|.++.. +.+....++..++
T Consensus 13 ~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 13 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 35789999999999999999999999999999999999999988898889999999987654 4445566788788
Q ss_pred Ccc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE
Q 009963 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (521)
Q Consensus 220 ~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv 298 (521)
+++ .+++||+||+|||++.++|+.+++++.+.+++++||+||||+++++++++.+.+|.+++|+|||+|++.++++|++
T Consensus 93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i~ 172 (302)
T 1f0y_A 93 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 172 (302)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEe
Confidence 876 7899999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhh
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~ 376 (521)
+++.+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++|. ++++||.+++ ++|||+|||+++|.
T Consensus 173 ~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~ 252 (302)
T 1f0y_A 173 KTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDY 252 (302)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985 9999999998 89999999999999
Q ss_pred cCchHHHHHhhHHHhhC-CCC-CccccHHHHHHHCCCCCccCCceeeecc
Q 009963 377 VGFGVAIATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 377 ~Gld~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~ 424 (521)
+|+|+++++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|+
T Consensus 253 ~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~ 302 (302)
T 1f0y_A 253 VGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302 (302)
T ss_dssp HCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence 99999999999999988 775 5588999999999999999999999994
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-25 Score=232.71 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=135.6
Q ss_pred cCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHH
Q 009963 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY 340 (521)
Q Consensus 261 ntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~ 340 (521)
.+++.+.++. ...+|.++++.|+++ ++++|+++++.|++++++.+.++++.+||+|++++|.||||+||++.++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~ 397 (483)
T 3mog_A 324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI 397 (483)
T ss_dssp ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence 4566666666 345789999999988 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCC-CCccccHHHHHHHCCCCCc
Q 009963 341 TQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGE 414 (521)
Q Consensus 341 ~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~G~~G~ 414 (521)
+|||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+++|++|.
T Consensus 398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~ 474 (483)
T 3mog_A 398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYE 474 (483)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCC
Confidence 999999999999 9999999999 999999999999999999999999999999987 5568899999999986554
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-26 Score=195.46 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=85.8
Q ss_pred hcCCeEE-EecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhC
Q 009963 317 KIKKTPI-VVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENF 393 (521)
Q Consensus 317 ~lGk~~v-vv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~ 393 (521)
.++|.+| +++|+||||+||++.++++||++++++|+ +++|||.+|+ ++|||+|||+++|.+|+|+++++++.+++.+
T Consensus 3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~ 82 (110)
T 3ctv_A 3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF 82 (110)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999 88899999999999999999999999997 9999999999 9999999999999999999999999999998
Q ss_pred CC-CCccccHHHHHHHCCCCCccCCce
Q 009963 394 PE-RTYKSMIIPIMQEDKRAGETTRKG 419 (521)
Q Consensus 394 ~~-~~~~~~~l~~~~~~G~~G~k~g~G 419 (521)
++ ++.|+++|++|+++|++|+|||+|
T Consensus 83 g~~~~~p~~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 83 GKKIFEPAKTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence 88 566889999999999999999987
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=205.40 Aligned_cols=204 Identities=17% Similarity=0.237 Sum_probs=163.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.+||..|+.+|+ +|++||++++.++.....+.... .......++..+++++++++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~t~d~~a~~~ 72 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSM------------VMFGSTSKVIGTDDYADISG 72 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhh------------hhcCCCcEEEECCCHHHhCC
Confidence 689999999999999999999998 99999999987765321111110 00111235666677888999
Q ss_pred CCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhcC-CCceeeccccccc
Q 009963 227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA 289 (521)
Q Consensus 227 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~~-~~r~ig~hf~~P~ 289 (521)
||+||+|+ +++..+++++++++.++++ ++++ +||++.+....++..+.+ |.|++|+
T Consensus 73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------ 145 (317)
T 2ewd_A 73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------ 145 (317)
T ss_dssp CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence 99999999 8889999999999999975 7776 788887777777777766 6888876
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhc---hHHHHHHHH-------HHHHHcCC-CHHHHH
Q 009963 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR---MFFPYTQAA-------FLLVERGT-DLYLID 358 (521)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nR---il~~~~~ea-------~~l~~~G~-~~~~ID 358 (521)
.|+.++......+.+.+|+. .++.+||++|| .+.++++++ ..++++|. +++++|
T Consensus 146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id 210 (317)
T 2ewd_A 146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID 210 (317)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence 26778888888899999986 47889999999 888999998 88899996 999999
Q ss_pred HHHHhcCCCccHHHHhhhcCc-hHHHHHhh
Q 009963 359 RAITKFGMPMGPFRLADLVGF-GVAIATGM 387 (521)
Q Consensus 359 ~a~~~~g~p~GPf~~~D~~Gl-d~~~~~~~ 387 (521)
.+++.. ++|||+++|..|. ++.+.+..
T Consensus 211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a~ 238 (317)
T 2ewd_A 211 EIVCHT--RIAWKEVADNLKTGTAYFAPAA 238 (317)
T ss_dssp HHHHHH--HHHHHHHHHHHSSSCCCHHHHH
T ss_pred HHHHHH--HhhHHHHHHhhcCCchHHHHHH
Confidence 999832 8899999999887 65555433
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.4e-19 Score=173.18 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=144.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 222 (521)
.+||+|||+|.||.+|+..|+++|+ +|++||+++++++...+. .| +..+.+ .+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~g-------------i~~~~~~~~ 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------CG-------------VHTTQDNRQ 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------TC-------------CEEESCHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------cC-------------CEEeCChHH
Confidence 3689999999999999999999999 999999999987764321 12 223334 35
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~ 300 (521)
.+++||+||+|||. ....++++++.+. ++++++++|++++++++.++..+..+.+++++||++|+..+..++ ++++
T Consensus 60 ~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~ 137 (280)
T 3tri_A 60 GALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN 137 (280)
T ss_dssp HHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred HHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence 68899999999975 4678999999988 889989999999999999999988888999999999999888777 4578
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecCc--ccchh-----hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFAV-----NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d~--~Gfi~-----nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
+.++++.++.+.++++.+|+.+++..+. ..+.. .-++ .++.|++. .+..|+++++.-..+.
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~-~~~~eal~~a~v~~Gl~~~~a~~l~~ 207 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYI-FLIMEALQEAAEQLGLTKETAELLTE 207 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8899999999999999999855432321 01100 1111 22334432 3467888777666554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=176.14 Aligned_cols=211 Identities=10% Similarity=0.048 Sum_probs=155.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+||+|||+|.||..++..|+++|++ |.+||++++.++...+. .| +..+.++ +.++
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~ 67 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVNP 67 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHhc
Confidence 5899999999999999999999999 99999999887654321 01 2234455 4468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC-----CCCeEEEEeC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-----VMPLLEIVRT 300 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~-----~~~lveiv~~ 300 (521)
+||+||+|+|++. + .+++.++.+.+++++++++++++++.+.++..+..+ -..|+++|.. .++.+.++.
T Consensus 68 ~~Dvvi~av~~~~-~-~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v- 141 (266)
T 3d1l_A 68 YAKLYIVSLKDSA-F-AELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI- 141 (266)
T ss_dssp CCSEEEECCCHHH-H-HHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE-
T ss_pred CCCEEEEecCHHH-H-HHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE-
Confidence 9999999999873 4 788888988888999999999999988776655432 2357776532 223333322
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecCc--ccc-----hhhchH--HHHHHHHHHHHHcCCCHHHHH--------HHHH-
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-----AVNRMF--FPYTQAAFLLVERGTDLYLID--------RAIT- 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d~--~Gf-----i~nRil--~~~~~ea~~l~~~G~~~~~ID--------~a~~- 362 (521)
..++++.++.+.++++.+|+.++++++. +++ ++|++. ...+.|++. .+.|++++++. .+++
T Consensus 142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 2357889999999999999999999853 356 677776 334556532 46899888874 4443
Q ss_pred hc-CCCccHHHHhhhcCchHHHHHhhH
Q 009963 363 KF-GMPMGPFRLADLVGFGVAIATGMQ 388 (521)
Q Consensus 363 ~~-g~p~GPf~~~D~~Gld~~~~~~~~ 388 (521)
+. +.++||+...|..|++..+..++.
T Consensus 221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~ 247 (266)
T 3d1l_A 221 EPKTAQTGPAIRYDENVIGNHLRMLAD 247 (266)
T ss_dssp CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence 32 557899999999999998887754
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=159.45 Aligned_cols=189 Identities=18% Similarity=0.213 Sum_probs=142.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+||+|||+|.||.+|+..|+++|+ +|++||+++++++...+. .| +..+.+. +
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~e 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YG-------------LTTTTDNNE 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HC-------------CEECSCHHH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hC-------------CEEeCChHH
Confidence 689999999999999999999998 999999999987764321 12 2233344 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCC-eEEEEeCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~ 301 (521)
.+++||+||.|||. ....++++++.+.++++++++|++++++++.+...+..+.++++.||++|+.... .+.+++++
T Consensus 60 ~~~~aDvVilav~~--~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 137 (247)
T 3gt0_A 60 VAKNADILILSIKP--DLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE 137 (247)
T ss_dssp HHHHCSEEEECSCT--TTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHHhCCEEEEEeCH--HHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence 57889999999964 3567888999888999999999999999999988887777899999999998876 67778888
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCc-cc----chhh-chHHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC-TG----FAVN-RMFFPYTQAAFLL--VERGTDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G----fi~n-Ril~~~~~ea~~l--~~~G~~~~~ID~a~~ 362 (521)
.++++.++.+.++++.+|+ ++++.+. .. .... -.+..++.|++.. +..|+++++..+++.
T Consensus 138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~ 205 (247)
T 3gt0_A 138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA 205 (247)
T ss_dssp TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999998 5555421 11 1100 1112234555543 467888888877776
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=163.07 Aligned_cols=165 Identities=14% Similarity=0.157 Sum_probs=130.4
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.++||+|||+|.||.+||..|.++|+ +|++||++++.++.+. +.|.++ ..++++ +
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~~ 89 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAK 89 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTTG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHHH
Confidence 35899999999999999999999999 9999999998876643 234321 123444 4
Q ss_pred -cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccC---------
Q 009963 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH--------- 290 (521)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~--------- 290 (521)
.+++||+||+|||.+. ..++++++.+.+++++||++++|+.. ++.+.+.++ .+|++.||+.+.+
T Consensus 90 ~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~ 165 (314)
T 3ggo_A 90 VEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD 165 (314)
T ss_dssp GGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred HhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence 5889999999999874 46788999999999999998887653 456666553 3899999997643
Q ss_pred ---CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhhch
Q 009963 291 ---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRM 336 (521)
Q Consensus 291 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~nRi 336 (521)
.+..+.+++++.++++.++.+.++++.+|+.+++++. ..+.++..+
T Consensus 166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~ 215 (314)
T 3ggo_A 166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVV 215 (314)
T ss_dssp TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHH
T ss_pred hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 2467888899889999999999999999999998873 455555433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=158.99 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=138.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
.|+||+|||+|.||.+||.+|+++||+|++||+++++++... +.|. ....+. +.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~a~s~~e~~ 57 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA-------------SAARSARDAV 57 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EECSSHHHHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcCC-------------EEcCCHHHHH
Confidence 378999999999999999999999999999999999877642 3342 123344 457
Q ss_pred cCCCEEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCC-------
Q 009963 225 KDVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV------- 291 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~------- 291 (521)
++||+||.|+|.+..++..++.. +.+.++++.++++ +||++++ ++++.+.. .|.||. .|+..
T Consensus 58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~----~G~~~lDaPVsGg~~~A~~ 132 (300)
T 3obb_A 58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARE----RGLAMLDAPVSGGTAGAAA 132 (300)
T ss_dssp TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHT----TTCEEEECCEESCHHHHHH
T ss_pred hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCEEEecCCCCCHHHHHh
Confidence 89999999999988776655542 5667788888864 5566554 44554432 267776 46543
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
..|..++.| ++++++.++++++.+|+..+++++ ..|. ++|+++.. .+.|++.+.+ .|++++.+-+++.
T Consensus 133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~ 209 (300)
T 3obb_A 133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMR 209 (300)
T ss_dssp TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 356667776 689999999999999999999986 3343 45555542 3689998875 6899999999988
Q ss_pred -hcC
Q 009963 363 -KFG 365 (521)
Q Consensus 363 -~~g 365 (521)
+.+
T Consensus 210 ~~~~ 213 (300)
T 3obb_A 210 RSSG 213 (300)
T ss_dssp TSTT
T ss_pred hCcc
Confidence 444
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-17 Score=161.49 Aligned_cols=207 Identities=11% Similarity=0.021 Sum_probs=140.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (521)
+||+|||+|.||.+|+..|+++ ++| .+||++++.++...+. .| . .+.+++ .++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------~g------------~--~~~~~~~~~~ 57 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------YG------------G--KAATLEKHPE 57 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------TC------------C--CCCSSCCCCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------cC------------C--ccCCHHHHHh
Confidence 5899999999999999999888 999 5999999887654311 11 1 233444 468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccc----c-ccCCC---CeEEE
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF----S-PAHVM---PLLEI 297 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~----~-P~~~~---~lvei 297 (521)
+||+||+|||++. ..+++.++. .+++++++.+++++.+.+... .+.+.|+. + |.... .+...
T Consensus 58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~ 127 (276)
T 2i76_A 58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG 127 (276)
T ss_dssp ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence 8999999999875 456666654 678888876656777655432 45566743 3 22211 22223
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecCc--c------cchhhchHHHHHHHHHHHHH-cCCC-H---------HHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T------GFAVNRMFFPYTQAAFLLVE-RGTD-L---------YLID 358 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~--~------Gfi~nRil~~~~~ea~~l~~-~G~~-~---------~~ID 358 (521)
+.+ +++.++.+.++++.+|+.++.+++. + ++..| .+..++.++..+.. .|++ . ..+|
T Consensus 128 ~~~---~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~ 203 (276)
T 2i76_A 128 LEG---DERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVAD 203 (276)
T ss_dssp ECC---CTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred EEe---ChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 333 4556889999999999988888732 2 34444 66677888888776 7884 4 5788
Q ss_pred HHHH-h-cCCCccHHHHhhhcCchHHHHHhhHHHhhC
Q 009963 359 RAIT-K-FGMPMGPFRLADLVGFGVAIATGMQFIENF 393 (521)
Q Consensus 359 ~a~~-~-~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~ 393 (521)
.+++ + .+.++||++..|..+++..++.++.+++.+
T Consensus 204 ~~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~ 240 (276)
T 2i76_A 204 NIKKMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT 240 (276)
T ss_dssp HHHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence 8887 5 778899999999999999999998875444
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=156.76 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=134.3
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
..++||+|||+|.||.+||..|+++|++|++||+++++++... +.| +..+++. +.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~~~ 74 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-----------EHG-------------ASVCESPAEV 74 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-----------HTT-------------CEECSSHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeEcCCHHHH
Confidence 4568999999999999999999999999999999998876642 122 2234444 45
Q ss_pred ccCCCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeeccccc--c--cCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFS--P--AHVMP 293 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~--P--~~~~~ 293 (521)
+++||+||.|||++..++..++ .++.+.+++++++++.+ +.++. .+...+. +..+|+. |++. | ....+
T Consensus 75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~ 152 (310)
T 3doj_A 75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQ 152 (310)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTC
T ss_pred HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCC
Confidence 7889999999998877765554 56777888898887644 44433 3444332 2223333 2221 1 11245
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-ccc----chhhchHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~G----fi~nRil~---~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.++.+ ++++++.+.++++.+|+.++++++ ..| ++.|.++. ..++|++.+.+ .|++++++..++.
T Consensus 153 l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 227 (310)
T 3doj_A 153 LIILAAG---DKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILD 227 (310)
T ss_dssp EEEEEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred eEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666666 588999999999999999999986 222 34454443 34789999886 6899999999998
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-16 Score=153.44 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=133.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
.+||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ...+++. +.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~e~~~ 63 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-----------AEGA------------CGAAASAREFAG 63 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC------------SEEESSSTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HcCC------------ccccCCHHHHHh
Confidence 46899999999999999999999999999999999877643 2232 1113444 5578
Q ss_pred CCCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHH---HHHHhhcC-CCceeecccccc-c---CCCCeE
Q 009963 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSP-A---HVMPLL 295 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~-~~r~ig~hf~~P-~---~~~~lv 295 (521)
+||+||.|||++..++..++ +++.+.+++++++++.+ +.++. .+.+.+.. ...|+. ||+.. + ....++
T Consensus 64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~ 141 (303)
T 3g0o_A 64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT 141 (303)
T ss_dssp TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECS-CCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecC-CCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence 99999999998877665554 56778888999887544 44443 44444422 233444 33321 1 123456
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc--c---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G--f---i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.++.+ +++.++.++++++.+|+.++++++.+| . ++|+++. ..++|++.+.+ .|++++++..++.
T Consensus 142 ~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 215 (303)
T 3g0o_A 142 VMASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVT 215 (303)
T ss_dssp EEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred EEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56655 688999999999999999999986344 2 3343332 44789998875 6899999999987
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=152.89 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=133.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||..+|..|+++|++|++||+++++++...+ .| +..++++ +.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 57 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------LG-------------AERAATPCEVVES 57 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhc
Confidence 58999999999999999999999999999999988766431 12 2334455 44688
Q ss_pred CCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeecccccc-c---CCCCeEE
Q 009963 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP-A---HVMPLLE 296 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~P-~---~~~~lve 296 (521)
||+||.|||++..++..++ .++.+.+++++++++. |+.++. .+...+. +..+|+. |++.+ + ....++.
T Consensus 58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~ 135 (287)
T 3pef_A 58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII 135 (287)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence 9999999998777766555 6788888899988765 444443 3443332 2233444 33321 1 1235566
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.+ ++++++.+.++++.+|+.++++++ ..+. ++|+++. ..++|++.+.+ .|++++++..++.
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~ 207 (287)
T 3pef_A 136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIG 207 (287)
T ss_dssp EEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEeC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6665 688999999999999999999975 2333 3444443 35799998875 6899999999998
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-16 Score=154.95 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=126.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
.++||+|||+|.||.+||..|+++|+ +|++||++ ++..+... +.| +..+++.
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~~ 78 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASVA 78 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCHH
Confidence 46799999999999999999999999 99999997 45544321 122 2234444
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccccc-cC------CC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFSP-AH------VM 292 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~~P-~~------~~ 292 (521)
+.+++||+||.|||++... +++.++.+.++++++|++++|..+.. .+...+ +.+++|.||+.+ +. ..
T Consensus 79 e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~--~~~~~g~~~vd~pv~g~~~~~~g 154 (312)
T 3qsg_A 79 EVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI--SRHRPSAQYAAVAVMSAVKPHGH 154 (312)
T ss_dssp HHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH--HHHCTTCEEEEEEECSCSTTTGG
T ss_pred HHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH--HhhcCCCeEEeccccCCchhhcC
Confidence 4578999999999998765 46788989999999988766554432 333333 223346666532 21 13
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccc-----hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf-----i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.+..++.++.+ +.+.++++.+|+.++++++.+|. ++|.++. ..++|++.+.+ .|++++-++ ++.
T Consensus 155 ~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~ 228 (312)
T 3qsg_A 155 RVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLD 228 (312)
T ss_dssp GSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHH
T ss_pred CEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHH
Confidence 57777787533 78889999999999999864442 3444444 55789988775 688885554 454
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=151.71 Aligned_cols=186 Identities=20% Similarity=0.212 Sum_probs=131.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (521)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.| +..++++++ ++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~- 70 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLA-----------EAG-------------ATLADSVADVAA- 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHH-----------HTT-------------CEECSSHHHHTT-
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CEEcCCHHHHHh-
Confidence 5899999999999999999999999999999998876543 122 234556644 56
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeeccccccc---CCCCeEEEEeC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLEIVRT 300 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~---~~~~lveiv~~ 300 (521)
||+||.|||++..++ .++.++.+.+++++++++.++..+. .++.+.+.. ..+|+....+.++ ....+..++.+
T Consensus 71 aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg 149 (296)
T 3qha_A 71 ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA 149 (296)
T ss_dssp SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC
T ss_pred CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC
Confidence 999999999876665 4558888888899988765443322 244444432 2233332111111 12456666666
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecC-ccc----chhhchHH---HHHHHHHHHHH-cCCCHHHH------HHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRMFF---PYTQAAFLLVE-RGTDLYLI------DRAIT 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~G----fi~nRil~---~~~~ea~~l~~-~G~~~~~I------D~a~~ 362 (521)
+++.++.+.++++.+|+.++++++ ..| ++.|.++. ..++|++.+.+ .|++++++ ..++.
T Consensus 150 ---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~ 223 (296)
T 3qha_A 150 ---DREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALT 223 (296)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHh
Confidence 688999999999999999999975 223 33444443 34789999875 68899999 88876
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-16 Score=153.16 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=128.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.+||.+|+++||+|++||+++++.+.. .+.|. ....+. +.+++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G~-------------~~~~s~~e~~~~ 61 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLGA-------------TVVENAIDAITP 61 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTTC-------------EECSSGGGGCCT
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eEeCCHHHHHhc
Confidence 589999999999999999999999999999999886542 12231 223344 56789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCC-------CCeE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~-------~~lv 295 (521)
||+||.|+|.+..+...+...+...+.++.|+++ +||++++ ++++.+.. .|.||. .|+.. ..+.
T Consensus 62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~ 136 (297)
T 4gbj_A 62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-MSTISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGN 136 (297)
T ss_dssp TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-CSCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCE
T ss_pred CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-CCCCChHHHHHHHHHHHh----cCCceecCCcCCCccccccccce
Confidence 9999999999887776666778888888888764 4455554 44444421 255665 45433 3455
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc--c---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G--f---i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
-++.+ +++.++.++++++.+|+..+++++.+| . ++|+++. ..++|++.+.+ .|++++.+-+++.
T Consensus 137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~ 210 (297)
T 4gbj_A 137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLT 210 (297)
T ss_dssp EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55555 688999999999999999999986444 2 4565554 23689988875 6999999999887
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=151.11 Aligned_cols=188 Identities=16% Similarity=0.134 Sum_probs=130.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
|+||+|||+|.||..||..|+++|++|++||+++++++...+ .| +..+++. +.++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 56 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------LG-------------ARQASSPAEVCA 56 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------HT-------------CEECSCHHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHH
Confidence 468999999999999999999999999999999988766431 12 2234454 4468
Q ss_pred CCCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeeccccccc---CCCCeEE
Q 009963 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA---HVMPLLE 296 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~P~---~~~~lve 296 (521)
+||+||.|||++..++..++ .++.+.+++++++++.+ +.++. .+...+. +..+|+....+.++ ....+..
T Consensus 57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~ 135 (287)
T 3pdu_A 57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMS-TVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLII 135 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEE
T ss_pred cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEE
Confidence 89999999998877765554 56777788888887544 44443 3444332 22233332222111 1124455
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc----hhhchHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF----AVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf----i~nRil~---~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.+ +++.++.++++++.+|+.++++++ ..|. +.|.++. ..++|++.+.+ .|++++++..++.
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 207 (287)
T 3pdu_A 136 LAAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLD 207 (287)
T ss_dssp EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555 688999999999999999999986 2333 3344332 34789988875 6899999999998
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=145.95 Aligned_cols=158 Identities=10% Similarity=0.040 Sum_probs=125.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
.+||+|||+|.||++||..|.++|++|++||+. +++.+
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~ 43 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRD 43 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGG
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhcc
Confidence 469999999999999999999999999999982 12467
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e 306 (521)
|| |.|||.+ .-..++.++.+.+++++|+++.+++.+.+-+.....++.+|++.||+... ..++.. .+++
T Consensus 44 aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a--~d~~ 112 (232)
T 3dfu_A 44 FE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASA--LDEL 112 (232)
T ss_dssp CS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEE--SSHH
T ss_pred CC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeC--CCHH
Confidence 89 8999987 34678889988899999998876666655555554567789999988532 123322 2778
Q ss_pred HHHHHHHHHHhcCCeEEEecC--cccc----hhhchHHHHHHHHHHHH---HcCC-CHHHH
Q 009963 307 VIVDLLDIGKKIKKTPIVVGN--CTGF----AVNRMFFPYTQAAFLLV---ERGT-DLYLI 357 (521)
Q Consensus 307 ~~~~~~~l~~~lGk~~vvv~d--~~Gf----i~nRil~~~~~ea~~l~---~~G~-~~~~I 357 (521)
.++.+.++++.+|..++.+++ .+++ ..++.+.++.++|.+++ ++|+ +++|+
T Consensus 113 a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~ 173 (232)
T 3dfu_A 113 GETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDI 173 (232)
T ss_dssp HHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Confidence 899999999999999999963 4565 45788888999999999 7898 88883
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=148.03 Aligned_cols=189 Identities=16% Similarity=0.081 Sum_probs=135.6
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++||+|||+ |.||..||..|+++|++|++||++++.++...+ .| + ..++..+.++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-~------------~~~~~~~~~~ 66 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-I------------PLTDGDGWID 66 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-C------------CCCCSSGGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-C------------CcCCHHHHhc
Confidence 479999999 999999999999999999999999988765321 22 1 1223345678
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC--------CCCe---
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPL--- 294 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~--------~~~l--- 294 (521)
+||+||+|||++. ..+++.++.+.+++++++++.+++.+++.+.+ .....++++.||+.|.. ....
T Consensus 67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~ 143 (286)
T 3c24_A 67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG 143 (286)
T ss_dssp TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence 9999999999875 47888999888999999998777677666654 33346899999998765 2222
Q ss_pred -----EEEEeCCCCcHHHHHHHHHHHHhcCC---eEEEecC-cccch----hhchHHHH---HHHHHHHH--HcCCCHHH
Q 009963 295 -----LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLV--ERGTDLYL 356 (521)
Q Consensus 295 -----veiv~~~~t~~e~~~~~~~l~~~lGk---~~vvv~d-~~Gfi----~nRil~~~---~~ea~~l~--~~G~~~~~ 356 (521)
..++.+..++++.++.+.++++.+|+ .++++++ ..+.+ .|-...++ +.|++... ..|+++++
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~ 223 (286)
T 3c24_A 144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA 223 (286)
T ss_dssp SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 33433333678899999999999999 7888863 22332 34444444 34544332 34888877
Q ss_pred HHHHHH
Q 009963 357 IDRAIT 362 (521)
Q Consensus 357 ID~a~~ 362 (521)
+-..+.
T Consensus 224 ~~~~~~ 229 (286)
T 3c24_A 224 ALDFMI 229 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=147.28 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=130.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
..+||+|||+|.||..||..|+++|++|++||+++++++... +.| +..++++ +.+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~e~~ 85 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-----------ALG-------------ATIHEQARAAA 85 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CEEESSHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HCC-------------CEeeCCHHHHH
Confidence 357999999999999999999999999999999999876642 122 2334455 457
Q ss_pred cCCCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCcH--HHHHHhhc-CCCceeecccccc---cCCCCeEEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSP---AHVMPLLEI 297 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~i--~~ia~~~~-~~~r~ig~hf~~P---~~~~~lvei 297 (521)
++||+||.|||++..++..++. ++.+.+++++++++.+++.+. ..+...+. +..+|+....+.+ +...++..+
T Consensus 86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~ 165 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIM 165 (320)
T ss_dssp TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEE
T ss_pred hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEE
Confidence 8999999999987776554442 566678888887755443322 24444332 2223333211111 122456666
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+.+ ++++++.+.++++.+ +.++++++ ..|. ++|+++. ..++|++.+.+ .|++++++..++.
T Consensus 166 ~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 235 (320)
T 4dll_A 166 AGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAIT 235 (320)
T ss_dssp EES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHT
T ss_pred eCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666 688999999999999 88888875 3343 3333332 34799998875 6899999999987
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=146.42 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=134.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
++||+|||+|.||.+||..|+++| ++|++||++++ .++... +.| +..+.+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~~ 77 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTPH 77 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeCC
Confidence 468999999999999999999999 89999999985 554421 112 122333
Q ss_pred c-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcC---CCceeecccccccCCCCeEE
Q 009963 221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS---KDRIVGAHFFSPAHVMPLLE 296 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~---~~r~ig~hf~~P~~~~~lve 296 (521)
. +.+++||+||.|||. ....+++.++.+.++++++|+|.++++++..+.+.+.. ..++++.|++.|........
T Consensus 78 ~~e~~~~aDvVilav~~--~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~ 155 (322)
T 2izz_A 78 NKETVQHSDVLFLAVKP--HIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT 155 (322)
T ss_dssp HHHHHHHCSEEEECSCG--GGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred hHHHhccCCEEEEEeCH--HHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence 3 457889999999984 35677888998888899999998888988877776643 45899999999887765555
Q ss_pred EE-eCCCCcHHHHHHHHHHHHhcCCeEEEecCcc----cch--hhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 297 IV-RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT----GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 297 iv-~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~----Gfi--~nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
++ .++.++++..+.+.++++.+|+.+++..+.. +.. .+.++. .+.|++. ....|+++++.-.++.
T Consensus 156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~~ 229 (322)
T 2izz_A 156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLGA 229 (322)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 6777778999999999999997655432211 111 122222 2334433 3456888877666554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=138.71 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=114.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+||+|||+|.||..+|..|+++| ++|++||++++.++...+. .| +..+.+. +.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~- 56 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH- 56 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence 48999999999999999999999 9999999999887654311 12 2223344 456
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCC-eEEEEeCCCCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS 304 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~~t~ 304 (521)
+||+||.|+| .. ....++.++.+ + ++++++.+|+++++.+.+.+..+.++++.++..|..... ...++++..++
T Consensus 57 ~~D~vi~~v~-~~-~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~ 131 (263)
T 1yqg_A 57 SDDVLILAVK-PQ-DMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS 131 (263)
T ss_dssp TTSEEEECSC-HH-HHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred cCCEEEEEeC-ch-hHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence 9999999999 33 34566665544 4 889999989999988888776655788886555665543 45677777788
Q ss_pred HHHHHHHHHHHHhcCCeEEEec
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
++.++.+.++++.+|+.+ +++
T Consensus 132 ~~~~~~~~~l~~~~g~~~-~~~ 152 (263)
T 1yqg_A 132 ETDRRIADRIMKSVGLTV-WLD 152 (263)
T ss_dssp HHHHHHHHHHHHTTEEEE-ECS
T ss_pred HHHHHHHHHHHHhCCCEE-EeC
Confidence 999999999999999876 665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=152.69 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=141.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~ 223 (521)
-+||+|||+|.||..+|.+|+++|++|++||+++++++...+.....+ +.| + .+.... ...++.+++++ +.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~----e~g-l-~~~l~~~~~~~~l~~ttd~~~a 81 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIH----EPG-L-KEVIARNRSAGRLRFSTDIEAA 81 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSC----CTT-H-HHHHHHHHHTTCEEEECCHHHH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcC----CCC-H-HHHHHHhcccCCEEEECCHHHH
Confidence 369999999999999999999999999999999998877542100000 000 0 000010 12457778887 46
Q ss_pred ccCCCEEEEeccc--------chhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhc----CCCc--eeecccc
Q 009963 224 FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY----SKDR--IVGAHFF 286 (521)
Q Consensus 224 ~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~----~~~r--~ig~hf~ 286 (521)
+++||+||.|||. |+....++++++.+.++++++++ +.||+++. .+...+. .+ + .-..+.+
T Consensus 82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~ 159 (478)
T 2y0c_A 82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVS 159 (478)
T ss_dssp HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEE
T ss_pred hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEE
Confidence 8899999999998 44678889999999999999885 45677652 2332221 11 1 1112456
Q ss_pred cccCCCCeE---------EEEeCCCCcH----HHHHHHHHHHHhcCC--eEEEecCc-----ccchhhchH---HHHHHH
Q 009963 287 SPAHVMPLL---------EIVRTNQTSP----QVIVDLLDIGKKIKK--TPIVVGNC-----TGFAVNRMF---FPYTQA 343 (521)
Q Consensus 287 ~P~~~~~lv---------eiv~~~~t~~----e~~~~~~~l~~~lGk--~~vvv~d~-----~Gfi~nRil---~~~~~e 343 (521)
+|....+.. .++.|.. ++ +..+.+.++++.+++ .++++.+. .+++.|.++ .+++||
T Consensus 160 ~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE 238 (478)
T 2y0c_A 160 NPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNE 238 (478)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776554433 3554432 33 788889999998775 56777642 346677665 467899
Q ss_pred HHHHHH-cCCCHHHHHHHHH
Q 009963 344 AFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 344 a~~l~~-~G~~~~~ID~a~~ 362 (521)
+..+.+ .|++++++..++.
T Consensus 239 ~~~la~~~Gid~~~v~~~i~ 258 (478)
T 2y0c_A 239 LANLADRFGADIEAVRRGIG 258 (478)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 999886 6899999998885
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-15 Score=157.22 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhh
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLAD 375 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D 375 (521)
.+++++.+.+.++...+|+.++.+ .+|+|+||++.+++|||++++++|+ +++|||.+|+ |+|||+ |||+++|
T Consensus 331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D 408 (463)
T 1zcj_A 331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA 408 (463)
T ss_dssp EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence 468888888888888888766544 3799999999999999999999998 5999999999 999998 9999999
Q ss_pred hcCchHHHHHhhHHHhhCCC--CCccccHHHHHHHCC
Q 009963 376 LVGFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDK 410 (521)
Q Consensus 376 ~~Gld~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~G 410 (521)
.+|+|.++++++.+++.+++ ++.|+++|++|+++|
T Consensus 409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G 445 (463)
T 1zcj_A 409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 445 (463)
T ss_dssp HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTT
T ss_pred HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcC
Confidence 99999999999999999998 567899999999986
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-14 Score=140.62 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=128.9
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
..+||+|||+|.||.+||..|+++|++|++||+++++++... +.| +..+.+. +.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~ 63 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALV-----------AAG-------------AHLCESVKAAL 63 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-----------HHT-------------CEECSSHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHH
Confidence 357899999999999999999999999999999999877643 122 1223444 457
Q ss_pred cCCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCc--HHHHHHhhc-CCCceeeccccc-ccC--CCCeEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTID--LNLIGERTY-SKDRIVGAHFFS-PAH--VMPLLE 296 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~--i~~ia~~~~-~~~r~ig~hf~~-P~~--~~~lve 296 (521)
++||+||.|||.+..++..+ . .+... .+++++++.+++.+ ..++.+.+. +..+|+....+. |+. ...++.
T Consensus 64 ~~aDvVi~~vp~~~~~~~v~-~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i 141 (306)
T 3l6d_A 64 SASPATIFVLLDNHATHEVL-GMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS 141 (306)
T ss_dssp HHSSEEEECCSSHHHHHHHH-TSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred hcCCEEEEEeCCHHHHHHHh-cccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence 88999999999887665444 4 45544 56777764433322 224444432 223444432221 111 123455
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEe--cC--cccchhhchHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVV--GN--CTGFAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv--~d--~~Gfi~nRil~---~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.+ ++++++.++++++.+|+.++++ ++ ..|..++.++. ..++|++.+.+ .|++++++..++.
T Consensus 142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 212 (306)
T 3l6d_A 142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL 212 (306)
T ss_dssp EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555 6889999999999998899999 74 45677773332 44789988875 6899999999887
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=145.61 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=135.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++||+|||+|.||..+|..|++.|++|++||++++.++... +.|. ..+.+. +.++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~-------------~~~~~~~~~~~ 85 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-----------QEGA-------------RLGRTPAEVVS 85 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-----------HTTC-------------EECSCHHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HcCC-------------EEcCCHHHHHh
Confidence 47899999999999999999999999999999998766532 1221 123333 4578
Q ss_pred CCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcC--cHHHHHHhh-cCCCceeecccccc---cCCCCeEEE
Q 009963 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTI--DLNLIGERT-YSKDRIVGAHFFSP---AHVMPLLEI 297 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l--~i~~ia~~~-~~~~r~ig~hf~~P---~~~~~lvei 297 (521)
+||+||+|+|+...++..+.. .+.+.+.+++++++.+++. ...++.+.+ .++.++++.+++++ +....++.+
T Consensus 86 ~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~ 165 (316)
T 2uyy_A 86 TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVIL 165 (316)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEE
Confidence 899999999977666544432 1235677888776544332 345666665 34668888877642 234566777
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC-ccc----chhhchH---HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG----FAVNRMF---FPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~G----fi~nRil---~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+.+ +++.++.+.++++.+|+.++++++ ..+ ++.|.+. ..+++|++.+.+ .|+++++++.++.
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~ 236 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN 236 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 776 578889999999999999888865 222 3556653 456899998865 6899999998887
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=144.79 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=115.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF- 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~- 224 (521)
++||+|||+|.||++||..|.++|++|++||++++.++.+. +.|. ..+.+.+ .+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~G~-------------~~~~~~~e~~~ 63 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV-----------DEGF-------------DVSADLEATLQ 63 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH-----------HTTC-------------CEESCHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------eeeCCHHHHHH
Confidence 57899999999999999999999999999999998877643 2232 1223332 23
Q ss_pred ---cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccCC--------
Q 009963 225 ---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-------- 291 (521)
Q Consensus 225 ---~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~-------- 291 (521)
.+||+||.|||.+ ....+++++.+. ++++||++.+|+.. ++.+...+. ..+|++.||+...+.
T Consensus 64 ~a~~~aDlVilavP~~--~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~ 139 (341)
T 3ktd_A 64 RAAAEDALIVLAVPMT--AIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMD 139 (341)
T ss_dssp HHHHTTCEEEECSCHH--HHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCS
T ss_pred hcccCCCEEEEeCCHH--HHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhh
Confidence 3689999999954 456888888886 88899877666532 345555443 468999999875431
Q ss_pred ----CCeEEEEeCCCCcHH--------HHHHHHHHHHhcCCeEEEec
Q 009963 292 ----MPLLEIVRTNQTSPQ--------VIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 292 ----~~lveiv~~~~t~~e--------~~~~~~~l~~~lGk~~vvv~ 326 (521)
...+.+++++.++++ .++.+.++++.+|..+++++
T Consensus 140 ~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 140 GLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR 186 (341)
T ss_dssp STTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence 234667888878877 89999999999999999886
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=141.09 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=132.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
.+||+|||+|.||..++..|++.|++|++||++++.++... +.| +....++ +.+.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~ 59 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVV-----------AQG-------------AQACENNQKVAA 59 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------TTT-------------CEECSSHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 36899999999999999999999999999999998776532 112 1223344 3467
Q ss_pred CCCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcC--cHHHHHHhhcC-CCceeecccccccC----CCCeEE
Q 009963 226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFFSPAH----VMPLLE 296 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~-~~r~ig~hf~~P~~----~~~lve 296 (521)
+||+||.|+|.+..++..+. .++.+.+++++++++.+++. +...+.+.+.. ..++++. +..+.. ...+..
T Consensus 60 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~ 138 (301)
T 3cky_A 60 ASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTI 138 (301)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEE
T ss_pred CCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEE
Confidence 89999999998777665554 37778889999998887776 34566665532 2233332 221111 122344
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc----hhhch---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF----AVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf----i~nRi---l~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.+ +++.++.+.++++.+|+.++++++ ..|. +.|.+ +...++|++.+.. .|+++++++.++.
T Consensus 139 ~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 210 (301)
T 3cky_A 139 MVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG 210 (301)
T ss_dssp EEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4554 688899999999999998888864 3443 34544 3346889988764 6899999988887
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=137.49 Aligned_cols=193 Identities=14% Similarity=0.102 Sum_probs=126.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 224 (521)
++||+|||+|.||.+||..|+++| ++|++||++++..++..+.. +...+.| + .+ +..+.+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~~ 85 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAGI 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHHH
Confidence 468999999999999999999999 99999999973221111111 1111222 1 23 334567
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeeccccccc--CCCCeEEEEe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA--HVMPLLEIVR 299 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~--~~~~lveiv~ 299 (521)
++||+||.|||.+...+ .+.++.+.+++++++++.++..+. ..+.+.+.. ..+|+....+.|. ....+..++.
T Consensus 86 ~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg 163 (317)
T 4ezb_A 86 ACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA 163 (317)
T ss_dssp GGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred hcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence 89999999999887653 457888889999988765543322 244444432 2334432222232 2345666777
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCcccc-----hhhchH----HHHHHHHHHHHH-cCCCHHHHHHHHHhc
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMF----FPYTQAAFLLVE-RGTDLYLIDRAITKF 364 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf-----i~nRil----~~~~~ea~~l~~-~G~~~~~ID~a~~~~ 364 (521)
++.. +.++++++.+|+.++++++.+|. ++|+++ ...++|++.+.+ .|++++.++.+..+.
T Consensus 164 g~~~-----~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~ 233 (317)
T 4ezb_A 164 GRRA-----VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF 233 (317)
T ss_dssp STTH-----HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CChH-----HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7432 78889999999999999864452 344433 355799999875 689887666655543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-14 Score=139.44 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=120.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+++||+|||+|.||.++|..|+++ |++|++||++++.++.+. +.|... ..+.++ +
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~ 62 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFKV 62 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTTT
T ss_pred ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHHH
Confidence 457999999999999999999988 689999999998876532 123211 123444 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCc--HHHHHHhhcC-CCceeecccc------cccC--
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF------SPAH-- 290 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~--i~~ia~~~~~-~~r~ig~hf~------~P~~-- 290 (521)
.+++||+||.|||.+.. ..++.++.+. +++++++++.+|+.. .+.+.+.+.. ..++++.||+ .|..
T Consensus 63 ~~~~aDvVilavp~~~~--~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~ 140 (290)
T 3b1f_A 63 FAALADVIILAVPIKKT--IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAAN 140 (290)
T ss_dssp TGGGCSEEEECSCHHHH--HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCC
T ss_pred hhcCCCEEEEcCCHHHH--HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhh
Confidence 57899999999997653 6788888888 888998876544322 2566666654 6789999998 4443
Q ss_pred ----CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 291 ----VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 291 ----~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
....+.++++..++++..+.+.++++.+|+.++++++
T Consensus 141 ~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 141 VNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp TTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 2356778888878889999999999999998888763
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=148.80 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=136.9
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHH----HHHHHHHHH------HHHHHHHHHcCCCCHHHHHhhhc
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEK----FLEAGIGRV------RANLQSRVKKGKMTQEKFEKTIS 213 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~----~~~~~~~~i------~~~~~~~~~~g~~~~~~~~~~~~ 213 (521)
+++||+|||+|.||.++|.+|+++ |+ +|++||++++ +++...+.. ...++.++++ .....
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g 88 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG 88 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence 468999999999999999999999 99 9999999999 776643210 0011111110 00135
Q ss_pred ccccccCcccccCCCEEEEecccch--------hh--HHHHHHHHHhhCCCCceEEecCCcCcHH---HHHH-hh-cCCC
Q 009963 214 LLTGVLDYESFKDVDMVIEAIIENV--------SL--KQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RT-YSKD 278 (521)
Q Consensus 214 ~i~~~~~~~~~~~aDlVIeav~e~~--------~~--k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~-~~-~~~~ 278 (521)
++.++++.+++++||+||+|||++. ++ .....+.+.+.++++++++ +.||+++. ++.. .+ ....
T Consensus 89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g 167 (478)
T 3g79_A 89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG 167 (478)
T ss_dssp CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence 6778888888999999999998763 22 3455678888999999875 56777653 3332 11 0000
Q ss_pred ceeec--cc-ccccCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhc-CCeEEEecCc-cc---chhhchHH---
Q 009963 279 RIVGA--HF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGNC-TG---FAVNRMFF--- 338 (521)
Q Consensus 279 r~ig~--hf-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~l-Gk~~vvv~d~-~G---fi~nRil~--- 338 (521)
...|. ++ ++|....+. ..|+.| .+++..+.+.++++.+ ++.++++++. .+ -++|+++.
T Consensus 168 ~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~ 245 (478)
T 3g79_A 168 LKAGEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQ 245 (478)
T ss_dssp CCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHH
Confidence 00111 11 266543221 134544 3677889999999999 8888888752 22 24455443
Q ss_pred -HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 339 -PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 339 -~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+++||+..+.+ .|++++++-.++.
T Consensus 246 Ia~~nE~~~l~e~~GiD~~~v~~~~~ 271 (478)
T 3g79_A 246 IAAINQLALYCEAMGINVYDVRTGVD 271 (478)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 56899998875 6999999888887
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=132.61 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=115.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++||+|||+|.||..++..|.+.|++|.+||++++.++...+. .| +..+.++ +.++
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~ 59 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLID 59 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cC-------------CEeeCCHHHHHh
Confidence 3689999999999999999999999999999999887654321 02 1223444 3467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCC-eEEEEeCCCCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS 304 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~~t~ 304 (521)
++|+||.|+|.. ...+++.+ +.+++++++.+++++++.+.+.+....+++..|+..|..... .+.++++..++
T Consensus 60 ~~D~Vi~~v~~~--~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~ 133 (259)
T 2ahr_A 60 QVDLVILGIKPQ--LFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS 133 (259)
T ss_dssp TCSEEEECSCGG--GHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred cCCEEEEEeCcH--hHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence 999999999943 33444443 347789999988999988888776555788888887876654 45677887789
Q ss_pred HHHHHHHHHHHHhcCCeEEEecC
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
++.++.+.++++.+| .++++++
T Consensus 134 ~~~~~~~~~ll~~~G-~~~~~~~ 155 (259)
T 2ahr_A 134 QELQARVRDLTDSFG-STFDISE 155 (259)
T ss_dssp HHHHHHHHHHHHTTE-EEEECCG
T ss_pred HHHHHHHHHHHHhCC-CEEEecH
Confidence 999999999999999 5677764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=134.14 Aligned_cols=163 Identities=14% Similarity=0.145 Sum_probs=119.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||..+|..|.++|++|++||++++.++... +.|... ..+.+++++.+|
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~~~~ 58 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA 58 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCCc-----------cccCCHHHhCCC
Confidence 4899999999999999999999999999999998876532 123210 123445444899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccc------cC------CCCeE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP------AH------VMPLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P------~~------~~~lv 295 (521)
|+||.|+|.+ ....++.++.+.+++++++++. ++.+...+........++++.||+.. .+ ....+
T Consensus 59 D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~ 135 (279)
T 2f1k_A 59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (279)
T ss_dssp SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred CEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence 9999999965 4568888998889999988765 55554433332222238999998752 11 23467
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhhc
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNR 335 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~nR 335 (521)
.++++..++++..+.+.++++.+|..++++++ ..+.+...
T Consensus 136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~ 176 (279)
T 2f1k_A 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAW 176 (279)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence 78888778899999999999999998888875 33444443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=138.55 Aligned_cols=174 Identities=10% Similarity=0.098 Sum_probs=119.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (521)
.+||+|||+|.||..||..|+++|++|++||+++++++... +.| +..+.+++ .++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~~ 77 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-----------REG-------------IAGARSIEEFCA 77 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CEEeCCHHHHHh
Confidence 37999999999999999999999999999999999877642 122 22344443 356
Q ss_pred CC---CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhc-CCCceeeccccccc---CCCCeEE
Q 009963 226 DV---DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTY-SKDRIVGAHFFSPA---HVMPLLE 296 (521)
Q Consensus 226 ~a---DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~-~~~r~ig~hf~~P~---~~~~lve 296 (521)
+| |+||.|||.+ . ...++.++.+.+++++||++.+++.+.+ +++..+. +..+|++...+.++ ...+ .
T Consensus 78 ~a~~~DvVi~~vp~~-~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~ 153 (358)
T 4e21_A 78 KLVKPRVVWLMVPAA-V-VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--C 153 (358)
T ss_dssp HSCSSCEEEECSCGG-G-HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--E
T ss_pred cCCCCCEEEEeCCHH-H-HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--e
Confidence 67 9999999988 4 4567788999999999998777665433 4444442 22234433211111 1123 3
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcC--------------------CeEEEecC-cccchh---hchH-H---HHHHHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIK--------------------KTPIVVGN-CTGFAV---NRMF-F---PYTQAAFLLV 348 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lG--------------------k~~vvv~d-~~Gfi~---nRil-~---~~~~ea~~l~ 348 (521)
++.+ .++++++.+.++++.+| +.++++++ ..|.++ |..+ . ..++|++.+.
T Consensus 154 im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la 231 (358)
T 4e21_A 154 LMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL 231 (358)
T ss_dssp EEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 36889999999999999 56788875 455543 3322 2 3368888888
Q ss_pred Hc
Q 009963 349 ER 350 (521)
Q Consensus 349 ~~ 350 (521)
+.
T Consensus 232 ~~ 233 (358)
T 4e21_A 232 HH 233 (358)
T ss_dssp HT
T ss_pred Hh
Confidence 75
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-13 Score=131.84 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=116.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
|+||+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|... ..++++ +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~ 58 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV 58 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCcc-----------cccCCHHHH
Confidence 3689999999999999999999999 9999999998876532 223211 123344 55
Q ss_pred cc-CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccC----------
Q 009963 224 FK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH---------- 290 (521)
Q Consensus 224 ~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~---------- 290 (521)
++ +||+||.|||.+. -..++.++.+.++++++|++.+++.. ...+.+.+.. ++++.||+.+..
T Consensus 59 ~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~ 134 (281)
T 2g5c_A 59 EDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN 134 (281)
T ss_dssp GGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred hcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence 78 9999999999774 34778888888889988876444332 3455555532 488989876422
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
....+.++++..++++..+.+.++++.+|..++++++
T Consensus 135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 173 (281)
T 2g5c_A 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 173 (281)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3445778888788999999999999999998888874
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=136.20 Aligned_cols=189 Identities=16% Similarity=0.244 Sum_probs=129.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||..++..|+++|++|++||++++.++... +.| +..+.++ +.+++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 61 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-----------AAG-------------AETASTAKAIAEQ 61 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHHhC
Confidence 5899999999999999999999999999999998876532 112 1223444 34678
Q ss_pred CCEEEEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCc--HHHHHHhhcC-CCceeecccc-ccc-CCCCeEEEEe
Q 009963 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF-SPA-HVMPLLEIVR 299 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~-~~r~ig~hf~-~P~-~~~~lveiv~ 299 (521)
||+||.|+|....++..++ .++.+.+++++++++.++..+ ...+.+.+.. ...++....+ +|+ .....+.++.
T Consensus 62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~ 141 (299)
T 1vpd_A 62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 141 (299)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence 9999999997766655444 567778889998876655543 2466665533 2223332111 111 0112233443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecC-cccch---hhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi---~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+. +++.++.+.++++.+|+.++++++ ..|.. +|+.+. ..++|++.+.+ .|+++++++.++.
T Consensus 142 ~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 GG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp ES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 688899999999999999888864 44543 344443 46789988764 7899999988876
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=139.27 Aligned_cols=183 Identities=21% Similarity=0.225 Sum_probs=127.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||..+|..|+++|++|++||++++.++... +.| +..+.+. +.+++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 56 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQ-----------DAG-------------EQVVSSPADVAEK 56 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------TTT-------------CEECSSHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence 4799999999999999999999999999999998776532 112 2233444 44688
Q ss_pred CCEEEEecccchhhHHHHHHH---HHhhCCCCceEEecCCcCcHHHHHH---hhcCCCceeeccccc-ccCCC------C
Q 009963 227 VDMVIEAIIENVSLKQQIFAD---LEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFS-PAHVM------P 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~---l~~~~~~~~il~sntS~l~i~~ia~---~~~~~~r~ig~hf~~-P~~~~------~ 293 (521)
||+||.|+|.+..++. ++.+ +.+.+++++++++ +|++++..+.. .+.. + |.+|++ |+... +
T Consensus 57 ~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~--~--g~~~~~~p~~~g~~~a~~~ 130 (296)
T 2gf2_A 57 ADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEK--M--GAVFMDAPVSGGVGAARSG 130 (296)
T ss_dssp CSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHH--T--TCEEEECCEESHHHHHHHT
T ss_pred CCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH--c--CCEEEEcCCCCChhHHhcC
Confidence 9999999987766554 4444 3345678999988 88888765443 2321 1 344443 33221 2
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.+.++.+ .+++.++.+.++++.+|+.++++++ ..|. ++|+.+. .+++|++.+.. .|+++++++.++.
T Consensus 131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~ 206 (296)
T 2gf2_A 131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 206 (296)
T ss_dssp CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2344444 3577889999999999998888865 2232 3444443 46899998765 6899999999887
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-14 Score=138.91 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=128.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++||+|||+|.||..+|..|++.|++|++|| +++.++... +.| +..+.+. +.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~ 57 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELL-----------SLG-------------AVNVETARQVTE 57 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHH-----------HcC-------------CcccCCHHHHHh
Confidence 4689999999999999999999999999999 887665432 112 1223344 4478
Q ss_pred CCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeeccccc-ccC-------CCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAH-------VMP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~-P~~-------~~~ 293 (521)
+||+||.|+|.+..++..+.. ++.+.+++++++++.+++.+ ..++.+.+.. .|.||++ |.. ...
T Consensus 58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~----~g~~~~~~p~~~~~~~a~~g~ 133 (295)
T 1yb4_A 58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE----MGADYLDAPVSGGEIGAREGT 133 (295)
T ss_dssp TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTC
T ss_pred cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEEccCCCCHHHHHcCC
Confidence 999999999988766544332 66677888998887665532 3466665543 1555553 322 124
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc----hhhchH---HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF----AVNRMF---FPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf----i~nRil---~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+..++.+ +++.++.+.++++.+|+.++++++ ..|. +.|.+. ...++|+..+.+ .|+++++++.++.
T Consensus 134 ~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 208 (295)
T 1yb4_A 134 LSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALM 208 (295)
T ss_dssp EEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred eEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4545554 688899999999999998888875 3342 344322 246789988775 6899999988886
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=131.14 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=112.2
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+.++||+|||+|.||..+|..|+++|++|++ +|+++++++...+. .|. ...+++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~------------~~~~~~~~~ 78 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGA------------SVKAVELKD 78 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTT------------TEEECCHHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCC------------CcccChHHH
Confidence 3467999999999999999999999999999 99999887654321 111 112334566
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--------------cHHHHHHhhcCCCceeeccccccc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--------------DLNLIGERTYSKDRIVGAHFFSPA 289 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--------------~i~~ia~~~~~~~r~ig~hf~~P~ 289 (521)
+.++|+||.|+|.. ...+++.++.+ + +++++++.+.++ +.+.+++.++ ..+++..+++.|+
T Consensus 79 ~~~aDvVilavp~~--~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~ 153 (220)
T 4huj_A 79 ALQADVVILAVPYD--SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA 153 (220)
T ss_dssp HTTSSEEEEESCGG--GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred HhcCCEEEEeCChH--HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence 88999999999854 45677777765 4 577888888777 4567777765 4567666555443
Q ss_pred CCC---------CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 290 HVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 290 ~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
... +...++.+ .+++..+.+.++++.+|+.++.+++
T Consensus 154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence 221 23344454 3689999999999999999999875
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=146.34 Aligned_cols=203 Identities=15% Similarity=0.195 Sum_probs=137.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHhhh-----cccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEKTI-----SLLT 216 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~-----~~i~ 216 (521)
+++||+|||+|.||..+|..|+++ |++|++||+++++++... .|.. .....+... .++.
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~------------~g~~~i~e~~l~~~~~~~~~~~~~ 71 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN------------SPTLPIYEPGLKEVVESCRGKNLF 71 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence 357999999999999999999999 899999999999877632 1111 000011111 2455
Q ss_pred cccCc-ccccCCCEEEEecccchhh-------------HHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCc
Q 009963 217 GVLDY-ESFKDVDMVIEAIIENVSL-------------KQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDR 279 (521)
Q Consensus 217 ~~~~~-~~~~~aDlVIeav~e~~~~-------------k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r 279 (521)
+++++ +.+++||+||.|||..... ...+++++.+.++++++++ ++|++++. .+...+....
T Consensus 72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~- 149 (467)
T 2q3e_A 72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANT- 149 (467)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTC-
T ss_pred EECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhC-
Confidence 66675 4578999999999876543 2466778888889998875 45555543 3444442211
Q ss_pred eeecc---cccccCCCCeE----------EEEeCCC--CcHHHHHHHHHHHHhc-CCeEEEecCc-----ccchhhchH-
Q 009963 280 IVGAH---FFSPAHVMPLL----------EIVRTNQ--TSPQVIVDLLDIGKKI-KKTPIVVGNC-----TGFAVNRMF- 337 (521)
Q Consensus 280 ~ig~h---f~~P~~~~~lv----------eiv~~~~--t~~e~~~~~~~l~~~l-Gk~~vvv~d~-----~Gfi~nRil- 337 (521)
..+.+ +++|....+.. .++.++. ++++..+.+.++++.+ |+.++++++. .+++.|.++
T Consensus 150 ~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a 229 (467)
T 2q3e_A 150 KPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLA 229 (467)
T ss_dssp CTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHH
Confidence 11222 24565443332 2344433 3788899999999998 7777777642 346677654
Q ss_pred --HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 338 --FPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 338 --~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.++++|+..+.+ .|++++++..++.
T Consensus 230 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~ 257 (467)
T 2q3e_A 230 QRISSINSISALCEATGADVEEVATAIG 257 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 467899999886 5899999999997
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-13 Score=130.35 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=110.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
.+||+|||+|.||++||..|+++| ++|++||++++. .| +..+.+.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~ 53 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE 53 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence 358999999999999999999999 799999999764 11 1123344
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCC-eEEEEeC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRT 300 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-lveiv~~ 300 (521)
+.+++||+||.|||.. ...+++.++.+.+ ++.++++.+++++++.+.+.+....+++...+..|..... +..++++
T Consensus 54 ~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~ 130 (262)
T 2rcy_A 54 ELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN 130 (262)
T ss_dssp HHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred HHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence 4567899999999964 4568888888877 5677889999999988887765433444332334444433 3345677
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+.++++.++.+.++++.+|+ ++.+++
T Consensus 131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~ 156 (262)
T 2rcy_A 131 KNVNSTDKKYVNDIFNSCGI-IHEIKE 156 (262)
T ss_dssp TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 77889999999999999997 777763
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=129.07 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=112.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---S 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~ 223 (521)
++||+|||+|.||..+|..|+++|++|++||++++.++...+ .|............++..+++.+ .
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK-----------NGLIADFNGEEVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------CCEEEEeCCCeeEecceeecchhhccc
Confidence 469999999999999999999999999999999988765432 12100000000001222222222 2
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCcee-ecccc-----cccC---C-C
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAH---V-M 292 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~i-g~hf~-----~P~~---~-~ 292 (521)
+++||+||.|+|.+ .-.+++.++.+.+++++++++.+++++. ..+.+.+. +.+++ |.+++ .|.. . .
T Consensus 72 ~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 72 NEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred CCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence 34899999999975 3467888999999999999998888876 45655554 33677 43332 2211 1 1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~ 328 (521)
..+.++....++++..+.+.++++.+|..+++..|.
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~ 184 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV 184 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence 223455555567889999999999999988777653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-13 Score=139.63 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=131.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcccccccCc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (521)
+||+|||+|.||..+|..|+++|++|+++|+++++++...+.. -.+.....+.. ..++..++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 4899999999999999999999999999999999887643210 00000001111 2346677777
Q ss_pred c-cccCCCEEEEecccchh---------hHHHHHHHHHhhCCC---CceEEecCCcCcHH----HHHHhhcC--CCce-e
Q 009963 222 E-SFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPP---HCILASNTSTIDLN----LIGERTYS--KDRI-V 281 (521)
Q Consensus 222 ~-~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~---~~il~sntS~l~i~----~ia~~~~~--~~r~-i 281 (521)
+ .+++||+||.|||.... + .++++++.+.+++ ++++++ .|+.++. .+...+.. ..++ +
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v-~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~ 148 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYI-ETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGV 148 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHH-HHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTT
T ss_pred HHHhccCCEEEEEcCCCcccCCCcchHHH-HHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCC
Confidence 5 58899999999987654 4 4567888888888 888764 4455432 23333321 1121 1
Q ss_pred ecc-cccccCCCCeE---------EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-----ccchhhchH---HHHHHH
Q 009963 282 GAH-FFSPAHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAVNRMF---FPYTQA 343 (521)
Q Consensus 282 g~h-f~~P~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-----~Gfi~nRil---~~~~~e 343 (521)
..+ .++|....+.. .++.+. ++++..+.+.++++.+|.. +++.+. ..++.|.+. .++++|
T Consensus 149 ~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE 226 (436)
T 1mv8_A 149 DFGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANE 226 (436)
T ss_dssp TBEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23554433221 244443 3688889999999999984 444532 235566544 467899
Q ss_pred HHHHHH-cCCCHHHHHHHHH
Q 009963 344 AFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 344 a~~l~~-~G~~~~~ID~a~~ 362 (521)
+..+.+ .|+++++++.++.
T Consensus 227 ~~~l~~~~Gid~~~v~~~~~ 246 (436)
T 1mv8_A 227 IGNIAKAVGVDGREVMDVIC 246 (436)
T ss_dssp HHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHhc
Confidence 998886 5899999999886
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=138.13 Aligned_cols=197 Identities=18% Similarity=0.237 Sum_probs=131.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh----hcccccccCc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT----ISLLTGVLDY 221 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~~ 221 (521)
.++||+|||+|.||.++|..|++ |++|++||+++++++...+.. ..+.....+.. ..++.+++++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcCH
Confidence 46799999999999999999998 999999999999988754311 00111112211 1357778886
Q ss_pred -ccccCCCEEEEecccchh---------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccccc
Q 009963 222 -ESFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSP 288 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~P 288 (521)
+.+++||+||+|||++.+ .-..+.+.+.+ ++++++++ +.||+++. ++...+.. . ++.| +|
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~~-sP 176 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVIF-SP 176 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence 568999999999998742 34566678888 88898886 56677653 55554432 2 3333 77
Q ss_pred cCCCCe------E---EEEeCCCCcHHHHHHHHHHHHh--cCC-eEEEecC-cccc---hhhchHH----HHHHHHHHHH
Q 009963 289 AHVMPL------L---EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGN-CTGF---AVNRMFF----PYTQAAFLLV 348 (521)
Q Consensus 289 ~~~~~l------v---eiv~~~~t~~e~~~~~~~l~~~--lGk-~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l~ 348 (521)
....+. + .|+.|. +++..+.+.+++.. ++. .++++.+ ..+. ++++++. +++||+..+.
T Consensus 177 e~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la 254 (432)
T 3pid_A 177 EFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA 254 (432)
T ss_dssp CCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654321 1 244442 34567788888876 453 3566554 2222 3444433 5689999887
Q ss_pred H-cCCCHHHHHHHHH
Q 009963 349 E-RGTDLYLIDRAIT 362 (521)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (521)
+ .|++++++-.++.
T Consensus 255 e~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 255 ESQGLNSKQIIEGVC 269 (432)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHc
Confidence 5 6999999888885
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=142.83 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=131.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (521)
.+|+|||+|.||.+||..|+++|++|++||+++++++...+. ... . ..+..+.++++ +++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~~---~------~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN----------EAK---G------KSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT----------TTT---T------SSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc----------ccc---C------CCeEEeCCHHHHHhc
Confidence 589999999999999999999999999999999987764320 000 0 12344555543 444
Q ss_pred ---CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeecccccccC---CCCeEEE
Q 009963 227 ---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI 297 (521)
Q Consensus 227 ---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~~---~~~lvei 297 (521)
||+||.|||....++ +++.++.+.+++++||++.+++.+. ..+.+.+.. ..+|+++..+.++. ..+ .+
T Consensus 72 l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i 148 (497)
T 2p4q_A 72 LKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL 148 (497)
T ss_dssp SCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred CCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence 999999999876654 5668898999999988876655543 345554432 23344432222111 123 24
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCe------EEEec-Ccccc----hhhchH---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKT------PIVVG-NCTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDRAI 361 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~------~vvv~-d~~Gf----i~nRil---~~~~~ea~~l~~~--G~~~~~ID~a~ 361 (521)
+.+ .+++.++.++++++.+|+. +++++ ...|. +.|.+. ...++|++.+... |++++++..++
T Consensus 149 m~g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~ 226 (497)
T 2p4q_A 149 MPG--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF 226 (497)
T ss_dssp EEE--ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 444 2577889999999999987 56665 33443 356655 3567999998875 89999999888
Q ss_pred H
Q 009963 362 T 362 (521)
Q Consensus 362 ~ 362 (521)
.
T Consensus 227 ~ 227 (497)
T 2p4q_A 227 A 227 (497)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=140.69 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=132.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
-+|+|||+|.||.++|.+|+++|++|++||+++++++...+. +...+...+ ...++++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~------------~~g~l~~tt 76 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNV------------KAGRLSFTT 76 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhc------------ccCCEEEEC
Confidence 489999999999999999999999999999999988765321 001111100 124577888
Q ss_pred Cc-ccccCCCEEEEecccchh---------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcC--CCceeecc
Q 009963 220 DY-ESFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KDRIVGAH 284 (521)
Q Consensus 220 ~~-~~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~--~~r~ig~h 284 (521)
++ +.+++||+||.|||...+ ..+++++.+.+.+++++++++ .||+++. ++...+.. +. ...+
T Consensus 77 d~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~--~d~~ 153 (446)
T 4a7p_A 77 DLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPN--SGAK 153 (446)
T ss_dssp CHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTT--SCCE
T ss_pred CHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCC--CCce
Confidence 88 578999999999987653 356778889999999998875 5577653 33332211 11 1111
Q ss_pred c-ccccCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhcCCe---EEEecCcc-c---chhhchHH----HHHHH
Q 009963 285 F-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVGNCT-G---FAVNRMFF----PYTQA 343 (521)
Q Consensus 285 f-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~---~vvv~d~~-G---fi~nRil~----~~~~e 343 (521)
. ++|....+. ..|+.|. .++++.+.+.+++..+++. ++++++.. + -++|+.+. +++||
T Consensus 154 v~~~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE 232 (446)
T 4a7p_A 154 VVSNPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINE 232 (446)
T ss_dssp EEECCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 245432211 1233332 3578889999999998875 57776532 2 23444443 45899
Q ss_pred HHHHHH-cCCCHHHHHHHHH
Q 009963 344 AFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 344 a~~l~~-~G~~~~~ID~a~~ 362 (521)
+..+.+ .|++++++-.++.
T Consensus 233 ~~~l~~~~GiD~~~v~~~~~ 252 (446)
T 4a7p_A 233 IADLCEQVGADVQEVSRGIG 252 (446)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHh
Confidence 998875 6999999988886
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-13 Score=137.36 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=132.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
.|..|||+|.||..+|.+|+++|++|++||+++++++...+. +...+.+.+. ..++.+++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~------------~g~l~~tt 79 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLS------------SGKLKVST 79 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcc------------cCceEEeC
Confidence 589999999999999999999999999999999998875421 1111111111 23566676
Q ss_pred CcccccCCCEEEEecccchhh----------HHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhh-c-CCCceeec-
Q 009963 220 DYESFKDVDMVIEAIIENVSL----------KQQIFADLEKYCPPHCILASNTSTIDLN---LIGERT-Y-SKDRIVGA- 283 (521)
Q Consensus 220 ~~~~~~~aDlVIeav~e~~~~----------k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~-~-~~~r~ig~- 283 (521)
+ +++||+||.|||..... -....+.+.+.++++++++ ..||+++. ++...+ . .+.+ .|.
T Consensus 80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~-~~~d 154 (431)
T 3ojo_A 80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFT-IGED 154 (431)
T ss_dssp S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCC-BTTT
T ss_pred c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCC-cCCC
Confidence 6 45899999999876531 2445577888899999876 56677664 333221 1 1111 111
Q ss_pred -cc-ccccCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHH----HHHHHH
Q 009963 284 -HF-FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAA 344 (521)
Q Consensus 284 -hf-~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~----~~~~ea 344 (521)
++ ++|....+. ..|+.|. ++++.+.++++++.+++.++++++ ..+. ++|+++. +++||+
T Consensus 155 ~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~ 232 (431)
T 3ojo_A 155 IYLVHCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANEL 232 (431)
T ss_dssp EEEEECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 266443221 1345553 688999999999999988887764 2232 4555553 568999
Q ss_pred HHHHH-cCCCHHHHHHHHH
Q 009963 345 FLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 345 ~~l~~-~G~~~~~ID~a~~ 362 (521)
..+.+ .|++++++-.++.
T Consensus 233 ~~l~e~~GiD~~~v~~~~~ 251 (431)
T 3ojo_A 233 TKICNNLNINVLDVIEMAN 251 (431)
T ss_dssp HHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHc
Confidence 98875 6999999888886
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=139.28 Aligned_cols=207 Identities=15% Similarity=0.161 Sum_probs=133.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCcc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDYE-SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~~-~~ 224 (521)
+||+|||+|.||..+|..|+++|++|++||+++++++...+.....+ +.| + .+-... ...++.++++++ .+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~----e~g-l-~~~l~~~~~~~~l~~t~d~~ea~ 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIY----EPG-L-EKMIARNVKAGRLRFGTEIEQAV 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCC----STT-H-HHHHHHHHHTTSEEEESCHHHHG
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCccc----CCC-H-HHHHHhhcccCcEEEECCHHHHH
Confidence 59999999999999999999999999999999998876543110000 000 0 000000 124567777876 48
Q ss_pred cCCCEEEEecccchh--------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcC--CCceeeccc---ccc
Q 009963 225 KDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KDRIVGAHF---FSP 288 (521)
Q Consensus 225 ~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~--~~r~ig~hf---~~P 288 (521)
++||+||.|||.... ...++++++.+.+++++++++. ||+++. ++...+.. +...++..| ++|
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~P 155 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK-STVPVGSYRLIRKAIQEELDKREVLIDFDIASNP 155 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe-eeCCCcchHHHHHHHHHhccccCcCcceeEEech
Confidence 999999999987742 5677888999999999988654 456543 33332211 100001111 245
Q ss_pred cCCCCeE---------EEEeCCCCcHHHHHHHHHHHHhcCC--eEEEecCccc-----chhhchH---HHHHHHHHHHHH
Q 009963 289 AHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKK--TPIVVGNCTG-----FAVNRMF---FPYTQAAFLLVE 349 (521)
Q Consensus 289 ~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lGk--~~vvv~d~~G-----fi~nRil---~~~~~ea~~l~~ 349 (521)
....+.. .++.|. .++++.+.+.++++.+++ .++++.+..+ ++.|-+. .+++||+..+.+
T Consensus 156 e~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 234 (450)
T 3gg2_A 156 EFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCE 234 (450)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332211 233221 357889999999999987 4666665322 3334322 356899998875
Q ss_pred -cCCCHHHHHHHHH
Q 009963 350 -RGTDLYLIDRAIT 362 (521)
Q Consensus 350 -~G~~~~~ID~a~~ 362 (521)
.|++++++-.++.
T Consensus 235 ~~Gid~~~v~~~~~ 248 (450)
T 3gg2_A 235 RVGADVSMVRLGIG 248 (450)
T ss_dssp HHTCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHc
Confidence 6999999999987
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-13 Score=130.29 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=125.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||..+|..|++ |++|++||++++.++...+ .|. ..++..+.+.+|
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~~ 56 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQE-----------EFG-------------SEAVPLERVAEA 56 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHH-----------HHC-------------CEECCGGGGGGC
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH-----------CCC-------------cccCHHHHHhCC
Confidence 589999999999999999999 9999999999987765431 111 112222457899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC--cCcHHHHHHhhcC-CCceeecccccc-cC---CCCeEEEEeC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTYS-KDRIVGAHFFSP-AH---VMPLLEIVRT 300 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~l~i~~ia~~~~~-~~r~ig~hf~~P-~~---~~~lveiv~~ 300 (521)
|+||.|+|.+..++ .++.++.+.+++++++++.++ ..+...+.+.+.. ..++++. ++.+ +. ...+..++.+
T Consensus 57 D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~~ 134 (289)
T 2cvz_A 57 RVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLGG 134 (289)
T ss_dssp SEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEES
T ss_pred CEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEECC
Confidence 99999999876554 466788888888998874332 2334466665543 2244444 3221 11 1233444443
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecCc-ccc----hhhch---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF----AVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~Gf----i~nRi---l~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
+++.++.+.+++ .+|+.++++++. .+. +.|.+ +...++|+..+.. .|++++++..++.
T Consensus 135 ---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 135 ---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp ---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred ---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 688899999999 999988888753 332 23543 2456789988774 6899999888876
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=138.04 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=129.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
.+++|+|||+|.||.+||..|+++|++|++||+++++++...+ .+.. -.++..+.++++
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------g~~i~~~~s~~e~v 63 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK--------GTKVVGAQSLKEMV 63 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT--------TSSCEECSSHHHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC--------CCceeccCCHHHHH
Confidence 3578999999999999999999999999999999998776432 2110 012333444433
Q ss_pred --ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhc-CCCceeeccccc-c--cCCCCeE
Q 009963 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTY-SKDRIVGAHFFS-P--AHVMPLL 295 (521)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~-~~~r~ig~hf~~-P--~~~~~lv 295 (521)
+++||+||.|||....++ .++.++.+.++++.||++.+++.+.+ ++.+.+. +..+|++..... | +...+ .
T Consensus 64 ~~l~~aDvVil~Vp~~~~v~-~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~ 141 (484)
T 4gwg_A 64 SKLKKPRRIILLVKAGQAVD-DFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-S 141 (484)
T ss_dssp HTBCSSCEEEECSCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-E
T ss_pred hhccCCCEEEEecCChHHHH-HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-e
Confidence 346999999999876554 56788999999999998776665433 4444332 223344431111 1 11233 2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeE-------EEecC-cccc---hh-hchHH---HHHHHHHHHHHc--CCCHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AV-NRMFF---PYTQAAFLLVER--GTDLYLID 358 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~-------vvv~d-~~Gf---i~-nRil~---~~~~ea~~l~~~--G~~~~~ID 358 (521)
-++.+ ++++++.+.++++.+|..+ +++++ ..|. ++ |-+.. ..++|++.+.+. |++++++-
T Consensus 142 im~GG---~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~ 218 (484)
T 4gwg_A 142 LMPGG---NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA 218 (484)
T ss_dssp EEEEE---CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred eecCC---CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 23344 5788999999999999876 66664 2333 23 43333 347899998875 88999998
Q ss_pred HHHH
Q 009963 359 RAIT 362 (521)
Q Consensus 359 ~a~~ 362 (521)
.++.
T Consensus 219 ~v~~ 222 (484)
T 4gwg_A 219 QAFE 222 (484)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=130.40 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=114.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
.+||+|||+|.||.+||..|+++|++|++||++++.++...+.- .....-+. .....++..++++ +.++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~--------~~~~~l~g--~~l~~~i~~t~d~~ea~~ 98 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG--------VNNRYLPN--YPFPETLKAYCDLKASLE 98 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHS--------SBTTTBTT--CCCCTTEEEESCHHHHHT
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC--------CCcccCCC--CccCCCeEEECCHHHHHh
Confidence 46899999999999999999999999999999998876643210 00000000 0012345666776 4688
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH------HHHHhhcCCCceeecccccccC------CCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN------LIGERTYSKDRIVGAHFFSPAH------VMP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~------~ia~~~~~~~r~ig~hf~~P~~------~~~ 293 (521)
+||+||.|||.. ..+++++++.+.++++++++|.++++.+. .+.+.++. ..+. -...|.. ..+
T Consensus 99 ~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~--vlsgP~~a~ev~~g~p 173 (356)
T 3k96_A 99 GVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMA--VISGPSLATEVAANLP 173 (356)
T ss_dssp TCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEE--EEESSCCHHHHHTTCC
T ss_pred cCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEE--EEECccHHHHHHcCCC
Confidence 999999999975 56789999999999999999988887764 34444431 1111 0112321 223
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
...++.+ .+++..+.+++++...+..+++..|..|
T Consensus 174 t~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g 208 (356)
T 3k96_A 174 TAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG 208 (356)
T ss_dssp EEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred eEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence 3333333 4678889999999999988888777544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=122.79 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=113.9
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+||+||| +|.||..++..|+++|++|+++|++++.++...+.+.. .+.. ..+.. .++ +.++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~ 63 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE 63 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence 4799999 99999999999999999999999999877654322110 1100 11222 233 4478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--------------HHHHHHhhcCCCceeecccccccC-
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--------------LNLIGERTYSKDRIVGAHFFSPAH- 290 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--------------i~~ia~~~~~~~r~ig~hf~~P~~- 290 (521)
+||+||.|+|.+. .++++.++.+.++ ++++++.+++++ .+++++.+. ..+++..|+..|..
T Consensus 64 ~~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~ 139 (212)
T 1jay_A 64 ACDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAAR 139 (212)
T ss_dssp HCSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHH
T ss_pred cCCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHH
Confidence 8999999999653 3477777776664 889999888776 578877765 36787776543321
Q ss_pred ------CCCeEEEEeCCCCcHHHHHHHHHHHHhc-CCeEEEecC
Q 009963 291 ------VMPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (521)
Q Consensus 291 ------~~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~vvv~d 327 (521)
...+..++.++ +++..+.+.++++.+ |+.++++++
T Consensus 140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~ 181 (212)
T 1jay_A 140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP 181 (212)
T ss_dssp HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence 12356666765 688999999999999 999999876
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=135.01 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=92.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.+||..++.+|+ +|++||++++.++.....+.+.... .....++..+++++++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~------------~~~~~~i~~t~d~~al~~ 82 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMAL------------IGSPAKIFGENNYEYLQN 82 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHH------------HTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhc------------cCCCCEEEECCCHHHHCC
Confidence 599999999999999999999999 9999999998887643333332211 011346777788888999
Q ss_pred CCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhc--CCCceeec
Q 009963 227 VDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVGA 283 (521)
Q Consensus 227 aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~--~~~r~ig~ 283 (521)
||+||+++ |+ +..+++++++++.+++ |++++ +||++.+. +.++.... +|.|++|+
T Consensus 83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence 99999998 55 5577999999999998 56654 67876643 44444333 57888887
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=136.05 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=131.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
-++|+|||+|.||.+||..|+++|++|++||+++++++...+.. .+ ..+..+.++++ ++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v~ 74 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN---------PG-----------KKLVPYYTVKEFVE 74 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------TT-----------SCEEECSSHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------CC-----------CCeEEeCCHHHHHh
Confidence 36899999999999999999999999999999999877643210 00 12334555533 44
Q ss_pred C---CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhc-CCCceeeccccc-cc--CCCCeEE
Q 009963 226 D---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS-PA--HVMPLLE 296 (521)
Q Consensus 226 ~---aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~-~~~r~ig~hf~~-P~--~~~~lve 296 (521)
+ ||+||.|||....+ ..++.++.+.++++++|++.+++.+. ..+.+.+. ...+++++..+. |. ...+ .
T Consensus 75 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~ 151 (480)
T 2zyd_A 75 SLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP--S 151 (480)
T ss_dssp TBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--E
T ss_pred CCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC--e
Confidence 4 99999999986555 46678898899999998877766643 34555443 233444432111 11 1234 3
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCe-------EEEecC-cccc----hhhchH---HHHHHHHHHHHHc--CCCHHHHHH
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDR 359 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~-------~vvv~d-~~Gf----i~nRil---~~~~~ea~~l~~~--G~~~~~ID~ 359 (521)
++.+. +++..+.+.++++.+|.. +.++++ ..|. +.|.+. ...+.|++.+... |++++++..
T Consensus 152 i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~ 229 (480)
T 2zyd_A 152 IMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQ 229 (480)
T ss_dssp EEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 44442 588999999999999987 566653 3332 345543 3457899998865 999999988
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
++.
T Consensus 230 l~~ 232 (480)
T 2zyd_A 230 TFT 232 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=131.14 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=87.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 202 (258)
T 4fzw_A 159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS-P----------------------------------- 202 (258)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++-
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f 255 (258)
T 4fzw_A 203 LALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDF 255 (258)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence 14557899999999999999999999999999999999999999999987653
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=130.76 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=87.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 155 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 198 (254)
T 3hrx_A 155 LLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGP-T----------------------------------- 198 (254)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccc-h-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+|+++++.+|++||+++
T Consensus 199 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~ 250 (254)
T 3hrx_A 199 RAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPR 250 (254)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 2445788999999999999999999999999999999999999999998765
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=138.03 Aligned_cols=204 Identities=14% Similarity=0.204 Sum_probs=131.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh-----hcccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT-----ISLLT 216 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~-----~~~i~ 216 (521)
+++||+|||+|.||..+|..|+++ |++|++||+++++++... .|... ....+.. ..++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~------------~g~~~i~e~gl~~~~~~~~~~~l~ 75 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWN------------SDKLPIYEPGLDEIVFAARGRNLF 75 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH------------CCCCCcCCCCHHHHHHHhhcCCEE
Confidence 467999999999999999999998 799999999999887643 12110 0001111 12466
Q ss_pred cccCc-ccccCCCEEEEecccchh-------------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCc
Q 009963 217 GVLDY-ESFKDVDMVIEAIIENVS-------------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDR 279 (521)
Q Consensus 217 ~~~~~-~~~~~aDlVIeav~e~~~-------------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r 279 (521)
+++++ +.+++||+||.|||.... ...++++.+.+.++++++|+ +.||+++. .+...+..-.+
T Consensus 76 ~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~gt~~~l~~~l~~~~~ 154 (481)
T 2o3j_A 76 FSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVV-EKSTVPVKAAESIGCILREAQK 154 (481)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHTC
T ss_pred EECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEE-ECCCCCCCHHHHHHHHHHHhhC
Confidence 67776 568899999999986532 35677888999999999886 44555542 34433321001
Q ss_pred e-eecc---cccccCCCCeE---------EEE-eCCCC--cHHHHHHHHHHHHhcCC-eEEEecCc-----ccchhhch-
Q 009963 280 I-VGAH---FFSPAHVMPLL---------EIV-RTNQT--SPQVIVDLLDIGKKIKK-TPIVVGNC-----TGFAVNRM- 336 (521)
Q Consensus 280 ~-ig~h---f~~P~~~~~lv---------eiv-~~~~t--~~e~~~~~~~l~~~lGk-~~vvv~d~-----~Gfi~nRi- 336 (521)
. .+.. .++|....+.. .++ .+... ++++.+.+.++++.+++ .++++.+. ..++.|-+
T Consensus 155 ~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~ 234 (481)
T 2o3j_A 155 NNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFL 234 (481)
T ss_dssp ----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHH
T ss_pred cCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHH
Confidence 0 0111 12443322111 233 33322 23678889999999996 67777642 22445543
Q ss_pred --HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 337 --FFPYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 337 --l~~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
..++++|+..+.+ .|++++++..++.
T Consensus 235 a~~ia~~nE~~~la~~~Gid~~~v~~~~~ 263 (481)
T 2o3j_A 235 AQRISSINSISAVCEATGAEISEVAHAVG 263 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 3467899998886 5999999999987
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=129.87 Aligned_cols=139 Identities=20% Similarity=0.213 Sum_probs=106.9
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++||+||| +|.||.+||..|+++|++|+++|++++. +..+.+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~ 64 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA 64 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence 56899999 9999999999999999999999998651 0113467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccC----CCCeEEEEe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----VMPLLEIVR 299 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~----~~~lveiv~ 299 (521)
+||+||.|||... ...++.++.+.++++++|++.+|+.. ++.+.... +.++++.||+.+++ ....+.+++
T Consensus 65 ~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~ 140 (298)
T 2pv7_A 65 NADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD 140 (298)
T ss_dssp TCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred CCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence 8999999999875 67888999888999998876655432 33444443 57899999975443 234555666
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+. +++.++.+.++++.+|..++++.+
T Consensus 141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~ 166 (298)
T 2pv7_A 141 GR--FPERYEWLLEQIQIWGAKIYQTNA 166 (298)
T ss_dssp EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence 54 677889999999999998888863
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=123.21 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=114.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
+||+|||+|.||..||..|+++|++|++||+ +++.++... +.|. . ++. +.+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~-----------~~g~-------------~--~~~~~~~ 54 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----------TVGV-------------T--ETSEEDV 54 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTC-------------E--ECCHHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHH-----------HCCC-------------c--CCHHHHH
Confidence 4899999999999999999999999999999 666655422 1121 1 233 446
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH---HHHHHhhcCCCceeecccccccC---CCCeEEEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAH---VMPLLEIV 298 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i---~~ia~~~~~~~r~ig~hf~~P~~---~~~lveiv 298 (521)
.+||+||.|||.+..++. +.++.+.+++ ++++. |+.++ ..+++.+.... +++.+++.++. ...+ .++
T Consensus 55 ~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~ 127 (264)
T 1i36_A 55 YSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIA 127 (264)
T ss_dssp HTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEE
T ss_pred hcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEe
Confidence 899999999998765543 3566666666 55443 45543 46676665544 66666554432 2333 455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCcccc-----hhhchH----HHHHHHHHHHH-HcCCCHHHHHHHHH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMF----FPYTQAAFLLV-ERGTDLYLIDRAIT 362 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf-----i~nRil----~~~~~ea~~l~-~~G~~~~~ID~a~~ 362 (521)
.++.. +.+.+ ++.+|+.++++++..|. +.++.+ ...++|++.+. ..|++++.+ ..+.
T Consensus 128 ~g~~~-----~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~~ 194 (264)
T 1i36_A 128 SGRDA-----EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLE 194 (264)
T ss_dssp ESTTH-----HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred cCCcH-----HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHH
Confidence 55322 66777 89999998888753443 334433 34578988876 468877644 4444
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=130.34 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=86.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 175 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 218 (274)
T 4fzw_C 175 LALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQ--PT---------------------------------- 218 (274)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+...+++++++.|.+.+..++.|+|+++++.+|++||+++-
T Consensus 219 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f 271 (274)
T 4fzw_C 219 FGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQF 271 (274)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCC
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence 14557899999999999999999999999999999999999999999987653
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-12 Score=133.02 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=130.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
++|+|||+|.||..+|..|+++|++|++||++++.++...+.. .+ ..+..+.++++ ++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v~~ 65 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH---------QD-----------KNLVFTKTLEEFVGS 65 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT---------TT-----------SCEEECSSHHHHHHT
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC---------cC-----------CCeEEeCCHHHHHhh
Confidence 5899999999999999999999999999999999877643210 00 12334455543 34
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeeccccccc---CCCCeEEE
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLEI 297 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~---~~~~lvei 297 (521)
+||+||.|||....++ .++.++.+.++++++|++.+++.+. ..+.+.+.. ..+++++..+.++ ...+ .+
T Consensus 66 l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i 142 (474)
T 2iz1_A 66 LEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--SM 142 (474)
T ss_dssp BCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--CE
T ss_pred ccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--eE
Confidence 4999999999876554 5668888889999988876666533 456655532 2334433211111 1123 23
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCe--------EEEecC-ccc----chhhchH---HHHHHHHHHHHHc--CCCHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKT--------PIVVGN-CTG----FAVNRMF---FPYTQAAFLLVER--GTDLYLIDR 359 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~--------~vvv~d-~~G----fi~nRil---~~~~~ea~~l~~~--G~~~~~ID~ 359 (521)
+++. +++..+.+.++++.+|.. +.++++ ..| ++.|.+. ...++|++.+... |++++++..
T Consensus 143 ~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~ 220 (474)
T 2iz1_A 143 MPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQA 220 (474)
T ss_dssp EEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3442 688999999999999987 355553 333 3456554 3557899998864 899999998
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
++.
T Consensus 221 l~~ 223 (474)
T 2iz1_A 221 IFE 223 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-13 Score=143.33 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=75.4
Q ss_pred cccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCC--Ccc
Q 009963 328 CTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPER--TYK 399 (521)
Q Consensus 328 ~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~--~~~ 399 (521)
....+.+|++.+++||+++++++|+ +++|||.+|. |+|||. |||+++|.+|++.+...++.|.+.++++ +.|
T Consensus 354 ~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p 433 (460)
T 3k6j_A 354 NDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIV 433 (460)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3467999999999999999999998 6999999999 999997 9999999999999999999999999998 679
Q ss_pred ccHHHHHHHCCCCCccCCc
Q 009963 400 SMIIPIMQEDKRAGETTRK 418 (521)
Q Consensus 400 ~~~l~~~~~~G~~G~k~g~ 418 (521)
+++|.+|+++|++|.|||.
T Consensus 434 ~~~L~~~a~~g~~~~~~~~ 452 (460)
T 3k6j_A 434 ADALKTANVSTGSSGSSGG 452 (460)
T ss_dssp CHHHHHHC-----------
T ss_pred CHHHHHHHHcCCCccccCC
Confidence 9999999999999999996
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=132.46 Aligned_cols=182 Identities=18% Similarity=0.116 Sum_probs=122.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
.++|+|||+|.||.++|..|..+|++|+++|++++. .+.+. +.|. ..+ +. +.+
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G~-------------~~~-~~~e~~ 70 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHGL-------------KVA-DVKTAV 70 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTTC-------------EEE-CHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCCC-------------EEc-cHHHHH
Confidence 368999999999999999999999999999998765 33221 1221 122 33 457
Q ss_pred cCCCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCcHHHHHHhh-cCCCceeecccccccCC---------CC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFFSPAHV---------MP 293 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~i~~ia~~~-~~~~r~ig~hf~~P~~~---------~~ 293 (521)
++||+||.|||.... ..++. ++.+.++++++|++. +++.+ .+.... ....++++.||+.|.+. ..
T Consensus 71 ~~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~ 146 (338)
T 1np3_A 71 AAADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI 146 (338)
T ss_dssp HTCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred hcCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence 899999999997753 67887 888889999999876 44544 332222 11235899999877541 22
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCC-e--EEEec----C-cccchhhchH----HHHHHHHH-HHHHcCCCHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKK-T--PIVVG----N-CTGFAVNRMF----FPYTQAAF-LLVERGTDLYLI 357 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk-~--~vvv~----d-~~Gfi~nRil----~~~~~ea~-~l~~~G~~~~~I 357 (521)
.+-++++..++++..+.+.++++.+|. . ++.+. + ...++.+..+ -.++..++ .+++.|+++++.
T Consensus 147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 334566666778889999999999998 4 55553 2 1233323222 23334433 345778877643
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=131.35 Aligned_cols=123 Identities=18% Similarity=0.326 Sum_probs=91.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+.+.. .....++..++++++++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~------------~~~~~~i~~t~d~~al~ 71 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM------------AYSNCKVSGSNTYDDLA 71 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH------------HTCCCCEEEECCGGGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhh------------cCCCcEEEECCCHHHhC
Confidence 5799999999999999999999998 9999999998887544444333211 11124577778888899
Q ss_pred CCCEEEEec--ccch-----------------hhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhc--CCCceee
Q 009963 226 DVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVG 282 (521)
Q Consensus 226 ~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~--~~~r~ig 282 (521)
+||+||+++ |+++ .+++++++++.+++ |++++ +||++.+. +.++.... +|.|++|
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence 999999998 6542 37899999999998 56654 67776654 44444333 5778888
Q ss_pred c
Q 009963 283 A 283 (521)
Q Consensus 283 ~ 283 (521)
+
T Consensus 150 ~ 150 (322)
T 1t2d_A 150 L 150 (322)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=135.37 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=128.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc---
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--- 224 (521)
++|+|||+|.||..+|..|+++|++|++||++++.++...+. . ..| ..+..+.+++++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---~-----~~g-----------~gi~~~~~~~e~v~~ 63 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---E-----AKG-----------TKVLGAHSLEEMVSK 63 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---T-----TTT-----------SSCEECSSHHHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc---c-----ccC-----------CCeEEeCCHHHHHhh
Confidence 479999999999999999999999999999999887764320 0 001 123345555443
Q ss_pred -cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeecccccccC---CCCeEEE
Q 009963 225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI 297 (521)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~~---~~~lvei 297 (521)
+++|+||.|||....++ .++.++.+.++++++|++.+++.+. ..+.+.+.. ...++++..+.++. ..+ .+
T Consensus 64 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i 140 (482)
T 2pgd_A 64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL 140 (482)
T ss_dssp BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred ccCCCEEEEeCCChHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence 58999999999876554 5667888889988988876666543 345554432 23455432222111 123 23
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeE-------EEecC-ccc----chhhchH---HHHHHHHHHHHH-c-CCCHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTG----FAVNRMF---FPYTQAAFLLVE-R-GTDLYLIDRA 360 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~-------vvv~d-~~G----fi~nRil---~~~~~ea~~l~~-~-G~~~~~ID~a 360 (521)
+.+. +++..+.+.++++.+|..+ +++++ ..| ++.|.+. ...++|++.+.. . |++++++..+
T Consensus 141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~ 218 (482)
T 2pgd_A 141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA 218 (482)
T ss_dssp EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 4432 4677888999999999875 44442 233 3456544 345799998876 5 8899999988
Q ss_pred HH
Q 009963 361 IT 362 (521)
Q Consensus 361 ~~ 362 (521)
+.
T Consensus 219 ~~ 220 (482)
T 2pgd_A 219 FE 220 (482)
T ss_dssp HH
T ss_pred HH
Confidence 85
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-12 Score=132.04 Aligned_cols=194 Identities=12% Similarity=0.069 Sum_probs=130.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
+||+|||+|.||..+|..|+++|++|++||++++.++...+. .|.. +. ...+..+.++++ ++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~-~~-----~~~i~~~~~~~e~v~~ 65 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASA-PF-----AGNLKAFETMEAFAAS 65 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTS-TT-----GGGEEECSCHHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCC-CC-----CCCeEEECCHHHHHhc
Confidence 479999999999999999999999999999999987764321 1211 00 012444556543 33
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeeccccccc---CCCCeEEE
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLEI 297 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P~---~~~~lvei 297 (521)
++|+||.|||....++ .+++++.+.++++++|++.+++.+. ..+.+.+.. ...++++....++ ...+ .+
T Consensus 66 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i 142 (478)
T 1pgj_A 66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AF 142 (478)
T ss_dssp BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred ccCCCEEEEecCChHHHH-HHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eE
Confidence 5999999999876554 5668888889999988876655533 455555532 2344443222111 1233 23
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCe-------EEEecC-cccc----hhhchH---HHHHHHHHHHHH-cCCCHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~-------~vvv~d-~~Gf----i~nRil---~~~~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
+.+. +++..+.+.++++.+|.. ++++++ ..|. +.|.+. ...++|++.+.. .|++++++..++
T Consensus 143 ~~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~ 220 (478)
T 1pgj_A 143 FPGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL 220 (478)
T ss_dssp EEEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4432 588899999999999987 455653 3332 345443 346789988775 688999998887
Q ss_pred H
Q 009963 362 T 362 (521)
Q Consensus 362 ~ 362 (521)
.
T Consensus 221 ~ 221 (478)
T 1pgj_A 221 E 221 (478)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-13 Score=145.53 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhc
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLV 377 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~ 377 (521)
+++....+..+....+...... ...-+..|++.+++||+++++++|+ ++.|||.+|. |+|||. |||+++|.+
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~--~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~ 689 (742)
T 3zwc_A 612 DPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASV 689 (742)
T ss_dssp CHHHHHHHHHHHHHHTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHH
T ss_pred ChHHHHHHHHHhhhcCCCcCCC--CHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHH
Confidence 4554444444444333221111 1235889999999999999999997 8999999999 999998 999999999
Q ss_pred CchHHHHHhhHHHhhCCC--CCccccHHHHHHHCCCCCccCCceeeeccC
Q 009963 378 GFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 378 Gld~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
|++.+++.++.+++.+|+ ++.|+++|++|+++|....+.++|||.+.+
T Consensus 690 G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~~~~~~~~ 739 (742)
T 3zwc_A 690 GLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHG 739 (742)
T ss_dssp CHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccccccCCCC
Confidence 999999999999999997 566999999999999888888888888754
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=119.75 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=102.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.+||+|||+|.||.+||..|+++|++|++||++++. +...... +.+.....+.......+..++..+.++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~ 89 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPD---------AMGAPPFSQWLPEHPHVHLAAFADVAA 89 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC----------------CCHHHHGGGSTTCEEEEHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhh---------hhcchhhhHHHhhcCceeccCHHHHHh
Confidence 479999999999999999999999999999999986 1110000 000000000000011222233335678
Q ss_pred CCCEEEEecccchhhHHHHHHHH-HhhCCCCceEEecCCcC----------------cH-HHHHHhhcCCCcee-ecccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTSTI----------------DL-NLIGERTYSKDRIV-GAHFF 286 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~l----------------~i-~~ia~~~~~~~r~i-g~hf~ 286 (521)
+||+||.|||.+... +++.++ .+.+ +++++++.+.++ .+ +.+++.++ ..+++ ++++.
T Consensus 90 ~aDvVilavp~~~~~--~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~ 165 (245)
T 3dtt_A 90 GAELVVNATEGASSI--AALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLNTM 165 (245)
T ss_dssp HCSEEEECSCGGGHH--HHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECSTTS
T ss_pred cCCEEEEccCcHHHH--HHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeeccc
Confidence 999999999987543 555666 5555 778887766321 23 34555553 24555 45443
Q ss_pred c-c-----c--CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCe-EEEecC
Q 009963 287 S-P-----A--HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT-PIVVGN 327 (521)
Q Consensus 287 ~-P-----~--~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~-~vvv~d 327 (521)
. | . ...++..++.++ +++..+.+.++++.+|+. ++.+++
T Consensus 166 ~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~ 213 (245)
T 3dtt_A 166 NASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD 213 (245)
T ss_dssp CHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence 1 1 1 123455555663 688999999999999975 477775
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=127.39 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=87.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 209 (265)
T 3kqf_A 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG-P----------------------------------- 209 (265)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 261 (265)
T 3kqf_A 210 IAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPM 261 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2556789999999989999999999999999999999999999999988754
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=127.01 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=87.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 207 (263)
T 3moy_A 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMS-R----------------------------------- 207 (263)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~ 259 (263)
T 3moy_A 208 PAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPE 259 (263)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCC
Confidence 2556789999999889999999999999999999999999999999998764
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=127.54 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=87.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 179 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 222 (278)
T 3h81_A 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMS-A----------------------------------- 222 (278)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~ 274 (278)
T 3h81_A 223 SAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQ 274 (278)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2556789999999889999999999999999999999999999999998764
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=125.36 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=86.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++.. |+
T Consensus 157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 200 (256)
T 3trr_A 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN--GP---------------------------------- 200 (256)
T ss_dssp HHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 252 (256)
T 3trr_A 201 LAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPV 252 (256)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 1455789999999989999999999999999999999999999999988654
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=117.33 Aligned_cols=135 Identities=11% Similarity=0.067 Sum_probs=100.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
..+||+|||+|.||+++|..|+++|++|++||++++ .++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~ 56 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT 56 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence 357999999999999999999999999999998764 356
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc---------------HHHHHHhhcCCCceee-ccccc-c
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---------------LNLIGERTYSKDRIVG-AHFFS-P 288 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~---------------i~~ia~~~~~~~r~ig-~hf~~-P 288 (521)
+||+||.|+| .. ..++++.++.+.++ ++++++.+++++ .+.+++.++ ..++++ .|++. |
T Consensus 57 ~aD~vi~av~-~~-~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p 132 (209)
T 2raf_A 57 LGEIVIMAVP-YP-ALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA 132 (209)
T ss_dssp CCSEEEECSC-HH-HHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred cCCEEEEcCC-cH-HHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence 8999999999 33 34578888877777 889988887665 345555553 357777 66642 2
Q ss_pred cC-----C--CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 289 AH-----V--MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 289 ~~-----~--~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.. . .+...++.+ .+++..+.+.++++.+|..++.+++
T Consensus 133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence 11 1 123333444 3678899999999999999988876
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=125.35 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 199 (255)
T 3p5m_A 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGG--PT---------------------------------- 199 (255)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 251 (255)
T 3p5m_A 200 LAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPN 251 (255)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2455789999998888999999999999999999999999999999988654
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=125.21 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=86.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 209 (265)
T 3swx_A 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQA-P----------------------------------- 209 (265)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 210 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 261 (265)
T 3swx_A 210 LGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAE 261 (265)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 2455789999998888999999999999999999999999999999988764
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=129.10 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=87.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 170 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p----------------------------------- 213 (275)
T 3hin_A 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNA-P----------------------------------- 213 (275)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+...+++++++.|...|..++.|+++++++++|++||+++.
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f 266 (275)
T 3hin_A 214 LTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKV 266 (275)
T ss_dssp HHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 14557899999988899999999999999999999999999999999998754
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=127.18 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=87.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~p---------------------------------- 225 (286)
T 3myb_A 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAK--PR---------------------------------- 225 (286)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~ 134 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++-.
T Consensus 226 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~ 279 (286)
T 3myb_A 226 AAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWH 279 (286)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCC
Confidence 144578999999888899999999999999999999999999999999877543
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=127.96 Aligned_cols=96 Identities=29% Similarity=0.393 Sum_probs=86.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 162 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 205 (261)
T 3pea_A 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK--SP---------------------------------- 205 (261)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~ 257 (261)
T 3pea_A 206 ATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS 257 (261)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2555789999998888899999999999999999999999999999988764
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=124.48 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=86.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 209 (265)
T 3rsi_A 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNG-P----------------------------------- 209 (265)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 261 (265)
T 3rsi_A 210 LAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREAR 261 (265)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1455789999999888999999999999999999999999999999988654
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=125.35 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=87.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 178 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 221 (279)
T 3g64_A 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADG--PA---------------------------------- 221 (279)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++-
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 274 (279)
T 3g64_A 222 LAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKW 274 (279)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 14557899999998889999999999999999999999999999999876543
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=125.81 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=87.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 162 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 205 (268)
T 3i47_A 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNN--AP---------------------------------- 205 (268)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRA-GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~-~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~ 134 (521)
.+...+|++++.....++++ .++.|.+.|..++.|+++++++.+|++||++...
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 260 (268)
T 3i47_A 206 EAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWN 260 (268)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 14557899999988888887 6899999999999999999999999999887653
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=126.05 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=83.7
Q ss_pred CcccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 143 APRRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 143 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
+.++++||+|||+|.||+++|..++.+|+ +|+++|++++....+.... . . ...++..+++
T Consensus 10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~-~-----~------------~~~~i~~t~d 71 (303)
T 2i6t_A 10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE-I-----F------------NLPNVEISKD 71 (303)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH-H-----H------------TCTTEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh-h-----h------------cCCCeEEeCC
Confidence 34557899999999999999999999999 9999999987322222111 0 0 0125666778
Q ss_pred cccccCCCEEEEec-------------ccchhhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhcC-CCceeec
Q 009963 221 YESFKDVDMVIEAI-------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 221 ~~~~~~aDlVIeav-------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~~-~~r~ig~ 283 (521)
++++++||+||+++ .++..+++++++++.+++ |++++ +||.+.+-...+...... |.|++|+
T Consensus 72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 99999999999997 899999999999999998 56655 677444222222222222 5688887
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=124.58 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=86.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 209 (265)
T 3qxi_A 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANG-P----------------------------------- 209 (265)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 261 (265)
T 3qxi_A 210 LAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPR 261 (265)
T ss_dssp HHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1455789999998888999999999999999999999999999999988654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-12 Score=127.73 Aligned_cols=122 Identities=21% Similarity=0.302 Sum_probs=91.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (521)
+||+|||+|.||.++|..|+..|+ +|++||++++.++.....+.+..... + ...++..+++++ +++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~~ 77 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAALT 77 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHhC
Confidence 699999999999999999999998 99999999988876444443332111 1 124677778886 799
Q ss_pred CCCEEEEec--ccch-----------------hhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhc--CCCceee
Q 009963 226 DVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVG 282 (521)
Q Consensus 226 ~aDlVIeav--~e~~-----------------~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~--~~~r~ig 282 (521)
+||+||+++ |+++ .+++++++++.+++ |++++ +||++.+. +.++.... .|.|++|
T Consensus 78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rviG 155 (331)
T 1pzg_A 78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMICG 155 (331)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEEe
Confidence 999999998 7654 34889999999998 66665 67776654 44443333 5778888
Q ss_pred c
Q 009963 283 A 283 (521)
Q Consensus 283 ~ 283 (521)
+
T Consensus 156 ~ 156 (331)
T 1pzg_A 156 M 156 (331)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-12 Score=124.43 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=86.9
Q ss_pred CcccCC--CCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSK--PVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~--~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||+ +++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 173 l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~-------------------------------- 218 (274)
T 3tlf_A 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN--AP-------------------------------- 218 (274)
T ss_dssp HHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH--------------------------------
T ss_pred HHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhC--CH--------------------------------
Confidence 478999 999999999999999999999999999999999886 21
Q ss_pred CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 79 NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 79 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 219 --~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 270 (274)
T 3tlf_A 219 --LAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPN 270 (274)
T ss_dssp --HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2555789999999888999999999999999999999999999999987654
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=125.13 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=86.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 179 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 222 (278)
T 4f47_A 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG-P----------------------------------- 222 (278)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998862 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~ 274 (278)
T 4f47_A 223 LAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPN 274 (278)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 1455789999999888999999999999999999999999999999988754
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-12 Score=122.46 Aligned_cols=96 Identities=26% Similarity=0.331 Sum_probs=86.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 202 (258)
T 2pbp_A 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQP-P----------------------------------- 202 (258)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 254 (258)
T 2pbp_A 203 LALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPR 254 (258)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence 1455788999988888999999999999999999999999999999987653
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-12 Score=122.64 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=86.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 209 (265)
T 2ppy_A 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSA-T----------------------------------- 209 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.+...++++++..|.+.|..++.|+++++++++|++||++.
T Consensus 210 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~ 261 (265)
T 2ppy_A 210 YAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPN 261 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2455789999998888999999999999999999999999999999887654
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=125.15 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc-CCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH-RRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. + |
T Consensus 162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~-p---------------------------------- 206 (265)
T 3qxz_A 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVA-P---------------------------------- 206 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCC-H----------------------------------
Confidence 578999999999999999999999999999999999999875 3 2
Q ss_pred CchHHHHHHHHHHhhhCChHHH--HHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAG--LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~--l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.....+++++ ++.|.+.|..++.|+++++++.+|++||+++.
T Consensus 207 -~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f 261 (265)
T 3qxz_A 207 -ESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRW 261 (265)
T ss_dssp -HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCC
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCC
Confidence 145578899998888888888 99999999999999999999999999987653
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=126.40 Aligned_cols=96 Identities=26% Similarity=0.422 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 208 (267)
T 3r9t_A 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNA-P----------------------------------- 208 (267)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCC-h-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHH---HHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDV---VEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~---i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++ ++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 209 ~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~ 263 (267)
T 3r9t_A 209 LSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPV 263 (267)
T ss_dssp HHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 145578888 8888778899999999999999999999999999999988654
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=125.40 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=87.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 231 (290)
T 3sll_A 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFS-R----------------------------------- 231 (290)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHh-CCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLL-RSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~-~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+.. .+++++++.|.+.|..++ .|+++++++.+|++||+++-
T Consensus 232 ~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f 286 (290)
T 3sll_A 232 PGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEF 286 (290)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 145578999999888 899999999999999999 99999999999999887653
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=119.60 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=101.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
..+||+|||+|.||..++..|++.|++|+++|++++.++... +.| +..+ ++ +.+
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~-~~~~~~ 81 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVT-FQEEAV 81 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEE-EHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------Ccee-cHHHHH
Confidence 457899999999999999999999999999999998765421 111 1122 33 457
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH----------HhhcCCCceeec-ccc-----cc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----------ERTYSKDRIVGA-HFF-----SP 288 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia----------~~~~~~~r~ig~-hf~-----~P 288 (521)
++||+||.|+|... ...+++ +...+ +++++++.+++++++.+. +.+. ..++++. ++. .+
T Consensus 82 ~~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~ 156 (215)
T 2vns_A 82 SSPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQA 156 (215)
T ss_dssp TSCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHT
T ss_pred hCCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcc
Confidence 89999999999642 344554 55555 788999999988876543 3332 2344432 221 11
Q ss_pred -cCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 289 -AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 289 -~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+...+...++.+ .+++..+.+.++++.+|+.++++++
T Consensus 157 ~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 157 GPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp CSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred cccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence 111222223333 3788999999999999999999986
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.3e-12 Score=122.16 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=86.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T 1mj3_A 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-K----------------------------------- 204 (260)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 256 (260)
T 1mj3_A 205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN 256 (260)
T ss_dssp HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 2455789999998888999999999999999999999999999999887653
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=121.53 Aligned_cols=95 Identities=22% Similarity=0.318 Sum_probs=85.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 157 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (253)
T 1uiy_A 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-P----------------------------------- 200 (253)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||++
T Consensus 201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p 251 (253)
T 1uiy_A 201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPP 251 (253)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCC
Confidence 144578899999888899999999999999999999999999999998754
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-12 Score=124.64 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=78.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 206 (260)
T 1sg4_A 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI--PD---------------------------------- 206 (260)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|++||+++|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 207 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence 13446788888877777889999999999999999999999999999987665
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-12 Score=122.44 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=86.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (269)
T 1nzy_A 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-T----------------------------------- 207 (269)
T ss_dssp HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++-
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f 260 (269)
T 1nzy_A 208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADR 260 (269)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Confidence 14446888999888889999999999999999999999999999999877654
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-12 Score=121.53 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=85.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMP-T----------------------------------- 201 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 253 (257)
T 2ej5_A 202 KAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPL 253 (257)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCC
Confidence 1444788999988888999999999999999999999999999999887653
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=122.36 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=85.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 232 (287)
T 2vx2_A 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLS-R----------------------------------- 232 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 233 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~ 284 (287)
T 2vx2_A 233 PVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPV 284 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 1444678899888888999999999999999999999999999999887653
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=123.05 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=104.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
|+||+|||+|.||..||..|+++|++|++||++++.++...+.- ......+. ......+..+++. +.+.
T Consensus 15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR--------ENVLFLKG--VQLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHT--------BCTTTSTT--CBCCTTEEEESCHHHHHT
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC--------cccccccc--cccccceeeeCCHHHHHc
Confidence 44999999999999999999999999999999998876543210 00000000 0001134445555 3478
Q ss_pred CCCEEEEecccchhhHHHHHHH----HHhhCCC-CceEEecCCcCcHH---HHHHhhcCCCceeeccc----ccccC---
Q 009963 226 DVDMVIEAIIENVSLKQQIFAD----LEKYCPP-HCILASNTSTIDLN---LIGERTYSKDRIVGAHF----FSPAH--- 290 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~----l~~~~~~-~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf----~~P~~--- 290 (521)
+||+||.|||. ....+++.+ +.+.+++ ++++++.++++++. .+.+.+.. .++.|. ..|..
T Consensus 85 ~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~---~~~~~~~~v~~gp~~~~~ 159 (366)
T 1evy_A 85 GAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIE 159 (366)
T ss_dssp TCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHH
T ss_pred CCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHH---HCCCCcEEEEeCCChHHH
Confidence 99999999996 345678887 8888888 88888887776653 22232211 112221 12221
Q ss_pred ---CCCeEEEEeCCCCcHHHHHHHHHHHHhc--CCeEEEecCc
Q 009963 291 ---VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC 328 (521)
Q Consensus 291 ---~~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~vvv~d~ 328 (521)
..+...++.+ .+++..+.+.+++... |..+.+..|.
T Consensus 160 ~~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 160 VATGVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp HHTTCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred HHhCCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 1222222232 3578889999999999 7776666664
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.9e-12 Score=122.87 Aligned_cols=93 Identities=26% Similarity=0.222 Sum_probs=70.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 165 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 208 (262)
T 3r9q_A 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFP-Q----------------------------------- 208 (262)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|++++.+...+++++++.|.+ +..++.| |+++++.+|++|+++
T Consensus 209 ~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p 257 (262)
T 3r9q_A 209 QCVRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGR 257 (262)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC----------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCC
Confidence 145578999999998999999999999 9999999 999999999998764
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=120.46 Aligned_cols=95 Identities=17% Similarity=0.099 Sum_probs=84.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++.. |+
T Consensus 168 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 211 (264)
T 1wz8_A 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQG--PK---------------------------------- 211 (264)
T ss_dssp HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+... ++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 212 ~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 262 (264)
T 1wz8_A 212 EALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPE 262 (264)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCC
Confidence 1444678888888777 89999999999999999999999999999987653
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-12 Score=124.93 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=50.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++.. |+
T Consensus 163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 206 (256)
T 3qmj_A 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAK--PI---------------------------------- 206 (256)
T ss_dssp HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 207 SSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR 256 (256)
T ss_dssp HHHHHHHHHHHCC-------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence 24557899999888889999999999999999999999999999999874
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-11 Score=119.62 Aligned_cols=169 Identities=20% Similarity=0.089 Sum_probs=106.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL 214 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 214 (521)
.+||+|||+|.||++||..|+++| ++|++||++++ .++...+. .......+. .....+
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~--~~~~~~ 77 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ--------HENVKYLPG--HKLPPN 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH--------SCCTTTSTT--CCCCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc--------CcccccCCc--ccCccC
Confidence 469999999999999999999999 99999999987 55442210 000000000 000123
Q ss_pred cccccCc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-----HHH----HHhhcCCCceeecc
Q 009963 215 LTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----NLI----GERTYSKDRIVGAH 284 (521)
Q Consensus 215 i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-----~~i----a~~~~~~~r~ig~h 284 (521)
+..+++. +.+++||+||.|||+. ...+++.++.+.++++++++|.++++++ ..+ ...++.+. .+-..
T Consensus 78 ~~~~~~~~~~~~~aD~Vilav~~~--~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~v~~g 154 (354)
T 1x0v_A 78 VVAVPDVVQAAEDADILIFVVPHQ--FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPM-SVLMG 154 (354)
T ss_dssp EEEESSHHHHHTTCSEEEECCCGG--GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCE-EEEEC
T ss_pred eEEEcCHHHHHcCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCE-EEEEC
Confidence 4445565 3478999999999974 5678899999999999999998887753 122 22222111 11111
Q ss_pred cccccC---CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 285 FFSPAH---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 285 f~~P~~---~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+..+.+ ..+...++.+ .+++..+.+.+++...|..+.+..|..+
T Consensus 155 p~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~ 201 (354)
T 1x0v_A 155 ANIASEVADEKFCETTIGC--KDPAQGQLLKELMQTPNFRITVVQEVDT 201 (354)
T ss_dssp SCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred CCcHHHHHhcCCceEEEEE--CCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence 111111 1222222222 4578889999999999988877776433
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=122.44 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=74.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 185 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 228 (280)
T 2f6q_A 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKL--PP---------------------------------- 228 (280)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|+.++.....+++++++.|.+.|..++.|+++++++.+|++||++
T Consensus 229 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 229 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence 134467888888777788999999999999999999999999999998753
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-12 Score=126.54 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=53.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++....|
T Consensus 194 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p----------------------------------- 238 (298)
T 3qre_A 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP----------------------------------- 238 (298)
T ss_dssp HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCH-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCH-----------------------------------
Confidence 578999999999999999999999999999999999999875112
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|++++.....++++++..|.+.|..++.|+++++++.+|++||+++.
T Consensus 239 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f 291 (298)
T 3qre_A 239 SSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQF 291 (298)
T ss_dssp HHHHHHHHHHHGGGGC-------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 14557899999998889999999999999999999999999999999988754
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=120.86 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 160 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 203 (261)
T 1ef8_A 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ--KLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~--~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|. .++.|+++++++++|++||+++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~ 257 (261)
T 1ef8_A 204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN 257 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCC
Confidence 144578889988888889999999999999 9999999999999999987654
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-12 Score=123.13 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=80.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 183 l~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 226 (291)
T 2fbm_A 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-P----------------------------------- 226 (291)
T ss_dssp HHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHH-HhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF-FAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF-~~kr~~~k 133 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+| ++||++.-
T Consensus 227 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f 280 (291)
T 2fbm_A 227 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAF 280 (291)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Confidence 144578889888777788999999999999999999999999999 99887653
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-10 Score=116.76 Aligned_cols=201 Identities=18% Similarity=0.237 Sum_probs=121.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhh----hcccccccCc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKT----ISLLTGVLDY- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~----~~~i~~~~~~- 221 (521)
+||+|||+|.||..+|..|++ |++|+++|+++++++...+ .+. +.....+.. ..++..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~ 68 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSK 68 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence 489999999999999999999 9999999999998776431 111 111111111 1245566665
Q ss_pred ccccCCCEEEEecccchh---------hHHHHHHHHHhhCCCCceEEe-cCCcCc-HHHHHHhhcCCCceeec-cccccc
Q 009963 222 ESFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILAS-NTSTID-LNLIGERTYSKDRIVGA-HFFSPA 289 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~il~s-ntS~l~-i~~ia~~~~~~~r~ig~-hf~~P~ 289 (521)
+.+++||+||.|||.... ...++++.+.+ ++++++++. .|.... ...+...+... .++.. .|..|.
T Consensus 69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v~~~Pe~~~~G 146 (402)
T 1dlj_A 69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RIIFSPEFLRES 146 (402)
T ss_dssp HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CEEECCCCCCTT
T ss_pred HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eEEECCccccCc
Confidence 567899999999998641 35677788888 788888774 333332 23555554322 22111 111221
Q ss_pred CC-----CCeEEEEeCCCC----cHHHHHHHHHHHHhcC-C-e-EEEecCc-cc----chhhchH---HHHHHHHHHHHH
Q 009963 290 HV-----MPLLEIVRTNQT----SPQVIVDLLDIGKKIK-K-T-PIVVGNC-TG----FAVNRMF---FPYTQAAFLLVE 349 (521)
Q Consensus 290 ~~-----~~lveiv~~~~t----~~e~~~~~~~l~~~lG-k-~-~vvv~d~-~G----fi~nRil---~~~~~ea~~l~~ 349 (521)
.. .+--.++.+... ..+..+.+.+++...+ . . ++++++. .+ ++.|-++ .+++||+..+.+
T Consensus 147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~ 226 (402)
T 1dlj_A 147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226 (402)
T ss_dssp STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 010122333321 1255667777776533 2 2 5666652 12 3444333 356899988875
Q ss_pred -cCCCHHHHHHHHH
Q 009963 350 -RGTDLYLIDRAIT 362 (521)
Q Consensus 350 -~G~~~~~ID~a~~ 362 (521)
.|++++++-.++.
T Consensus 227 ~~Gid~~~v~~~~~ 240 (402)
T 1dlj_A 227 SRKLNSHMIIQGIS 240 (402)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHhc
Confidence 6999999998885
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=119.80 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=85.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||++++|+||+++||||+|||+ ++++++|.++|++++..+ |
T Consensus 172 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-p---------------------------------- 216 (275)
T 1dci_A 172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P---------------------------------- 216 (275)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999999 999999999999998862 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh---ccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ---RGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k---r~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.+..++.|+++++++++|++| |+++
T Consensus 217 -~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~ 271 (275)
T 1dci_A 217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT 271 (275)
T ss_dssp -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred -HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence 144578899998888899999999999999999999999999999998 6543
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-12 Score=121.86 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=84.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+++.++|++++.. |+
T Consensus 165 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~p---------------------------------- 208 (261)
T 2gtr_A 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASC--NP---------------------------------- 208 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|++||++
T Consensus 209 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P 259 (261)
T 2gtr_A 209 VVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKID 259 (261)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence 144468888888777788999999999999999999999999999998865
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-11 Score=117.44 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=83.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+| +++++++|.++|++++.. |+
T Consensus 171 l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~--~~---------------------------------- 212 (267)
T 3oc7_A 171 YYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRG--SP---------------------------------- 212 (267)
T ss_dssp HHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 4789999999999999999999 788999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 213 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 264 (267)
T 3oc7_A 213 QGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPN 264 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1445788999988888899999999999999999999999999999988654
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=120.41 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=88.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccC-------CCcchh---hccc-CCCCCch--HHHHHHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR-------RPWVAT---LYKT-DKIEPLG--EAREIFK 67 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~-------~p~~~~---~~~~-~~~~~~~--~~~~~~~ 67 (521)
|+|||++++|++|+++||||+|||+++|.+.+.+++.+..... .|.... .... ..+.... .....++
T Consensus 168 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~ 247 (353)
T 4hdt_A 168 AALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALR 247 (353)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999987643210 000000 0000 0000000 0000010
Q ss_pred -----HHHHHHHHh-CCCCchHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHhCCHHHHHHHHHHH--hhccCCCC
Q 009963 68 -----FARAQARKQ-APNLTHPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLLRSETCKSLVHIFF--AQRGTSKV 134 (521)
Q Consensus 68 -----~a~~~~~~~-~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~--~kr~~~k~ 134 (521)
.+...+.+- .+.+.+...+|+.++++... +++++|+.|.+.|..++.|+|+++++++|+ +||+++-.
T Consensus 248 ~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~ 323 (353)
T 4hdt_A 248 AHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWR 323 (353)
T ss_dssp HHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCS
T ss_pred hcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCC
Confidence 111222222 34566899999999998876 799999999999999999999999999998 77776543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=115.45 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=94.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||.++|..|+.+|+ +|+++|++++.++.....+.+.. ... ...++..+ ++++++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~----~~~---------~~~~i~~~-d~~~~~ 66 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT----PFT---------RRANIYAG-DYADLK 66 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----GGS---------CCCEEEEC-CGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhh----hhc---------CCcEEEeC-CHHHhC
Confidence 489999999999999999999999 99999999988765433222211 000 01234333 577899
Q ss_pred CCCEEEEecccch--------------hhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhh-c-CCCceeeccccc
Q 009963 226 DVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERT-Y-SKDRIVGAHFFS 287 (521)
Q Consensus 226 ~aDlVIeav~e~~--------------~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~-~-~~~r~ig~hf~~ 287 (521)
+||+||+|++... .+++++++.+.+++ +++++ +||.+... +.+.... . .|.|++|+
T Consensus 67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~---- 140 (319)
T 1a5z_A 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS---- 140 (319)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence 9999999998532 46788899999886 45544 45554432 3444333 2 46778776
Q ss_pred ccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCe
Q 009963 288 PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321 (521)
Q Consensus 288 P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~ 321 (521)
.|..++......+.+.+|..
T Consensus 141 --------------~t~ld~~r~~~~la~~lgv~ 160 (319)
T 1a5z_A 141 --------------GTVLDTARLRTLIAQHCGFS 160 (319)
T ss_dssp --------------TTHHHHHHHHHHHHHHHTCC
T ss_pred --------------CccHHHHHHHHHHHHHhCcC
Confidence 24556666666677777743
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=117.65 Aligned_cols=168 Identities=14% Similarity=0.014 Sum_probs=108.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||+.+|..|+++|++|++||++++.++.. ...+. .. ......+. .++.+.++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~-~~---~~~~~~~~-~~~~~~~~~~ 64 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET-DG---SIFNESLT-ANDPDFLATS 64 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT-TS---CEEEEEEE-ESCHHHHHTC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcC-CC---ceeeeeee-ecCccccCCC
Confidence 489999999999999999999999999999998654321 01110 00 00001111 2334567899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCcee-ecccc-----cc-c-CC-CCeEEE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV-GAHFF-----SP-A-HV-MPLLEI 297 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~i-g~hf~-----~P-~-~~-~~lvei 297 (521)
|+||.|||... -.++++++.+.+++++++++.++++... .+.+.+ +. ++ |.+++ .| + +. ...+.+
T Consensus 65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~--~~-~~~g~~~~~~~~~~p~~~~~~~g~~~i 139 (291)
T 1ks9_A 65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQ--QP-LLMGTTTHAARRDGNVIIHVANGITHI 139 (291)
T ss_dssp SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCC--SC-EEEEEECCEEEEETTEEEEEECCCEEE
T ss_pred CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhc--CC-eEEEEEeEccEEcCCEEEEecccceEE
Confidence 99999999874 3678889999899999888888777653 444443 22 43 43332 33 1 11 011223
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 337 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil 337 (521)
.... .+++..+.+.++++.+|..+.+.+|..+...+.+.
T Consensus 140 ~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~ 178 (291)
T 1ks9_A 140 GPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLA 178 (291)
T ss_dssp EESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHH
T ss_pred ccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHe
Confidence 3322 34566788999999999988888775554444433
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-11 Score=118.90 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=76.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+||| +++++|.++|++++.. |+
T Consensus 163 l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~--~~---------------------------------- 204 (266)
T 3fdu_A 163 LLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTAL--PL---------------------------------- 204 (266)
T ss_dssp HHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999998 8999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|++++.+. .+++++++.|.+.|..++.|+++++++.+|++||++..
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~ 256 (266)
T 3fdu_A 205 ASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDF 256 (266)
T ss_dssp HHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 14446788887765 46889999999999999999999999999999988754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=119.22 Aligned_cols=170 Identities=12% Similarity=0.001 Sum_probs=106.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL 214 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 214 (521)
++||+|||+|.||++||..|+++| ++|++||++++ .++...+. .......+. .....+
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~--~~~~~~ 90 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK--------HENTKYLKG--VPLPHN 90 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH--------CBCTTTSTT--CBCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc--------CcccccCCc--ccCcCC
Confidence 468999999999999999999999 99999999987 54432210 000000000 001123
Q ss_pred cccccCc-ccccCCCEEEEecccchhhHHHHHHHHHh----hCCCCceEEecCCcCcH-----HHHHHhhcC--CCc-ee
Q 009963 215 LTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEK----YCPPHCILASNTSTIDL-----NLIGERTYS--KDR-IV 281 (521)
Q Consensus 215 i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~----~~~~~~il~sntS~l~i-----~~ia~~~~~--~~r-~i 281 (521)
+..+++. +.+++||+||.|||. ....+++.++.+ .++++++++|.++++++ ..+.+.+.. +.. .+
T Consensus 91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v 168 (375)
T 1yj8_A 91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSA 168 (375)
T ss_dssp EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEE
T ss_pred eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEE
Confidence 4555666 447899999999996 356788889988 88899999998877655 222222210 111 11
Q ss_pred eccccccc---CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 282 GAHFFSPA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 282 g~hf~~P~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
-..+..+. ...+...++.+ .+++..+.+.+++...|..+.+..|..|
T Consensus 169 ~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~ 218 (375)
T 1yj8_A 169 LSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIE 218 (375)
T ss_dssp EECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred EeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 11111111 11222222232 3577889999999999988888777543
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=117.51 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=79.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 173 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 216 (275)
T 4eml_A 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKS-P----------------------------------- 216 (275)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.... ........|.+.+..++.|+++++++.+|++||++.-
T Consensus 217 ~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f 268 (275)
T 4eml_A 217 LAIRCLKAAFNADCD-GQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDF 268 (275)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 144467888887653 2334456788889999999999999999999987653
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-11 Score=120.40 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=64.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (250)
T 2a7k_A 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-A----------------------------------- 200 (250)
T ss_dssp HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||.
T Consensus 201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 250 (250)
T 2a7k_A 201 SAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY 250 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 14456888888887778899999999999999999999999999998863
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=116.41 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=112.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
..+||+|||+|.||+.+|..|+++|++|++| ++++.++...+ .|......-.....++..+++.+.+.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA-----------TGLRLETQSFDEQVKVSASSDPSAVQ 85 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-----------HCEEEECSSCEEEECCEEESCGGGGT
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh-----------CCeEEEcCCCcEEEeeeeeCCHHHcC
Confidence 4579999999999999999999999999999 99887766432 12100000000112344556677788
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeeccc------ccccCC---CCeE
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHF------FSPAHV---MPLL 295 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~hf------~~P~~~---~~lv 295 (521)
++|+||.|||.. . ..++++++.+.++++++++|.+.++.. +.+.+.++ .++++... ..|-.. ..-
T Consensus 86 ~~D~vilavk~~-~-~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g- 160 (318)
T 3hwr_A 86 GADLVLFCVKST-D-TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG- 160 (318)
T ss_dssp TCSEEEECCCGG-G-HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-
T ss_pred CCCEEEEEcccc-c-HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-
Confidence 999999999987 3 468889999999999999999999988 45566554 45554211 123211 111
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhch
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRi 336 (521)
.+.-+. .+..+.+.+++...|....+..|..+.....+
T Consensus 161 ~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl 198 (318)
T 3hwr_A 161 ELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKL 198 (318)
T ss_dssp EEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHH
T ss_pred eEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHH
Confidence 111222 23456688888988988777777655544443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=133.74 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=81.3
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
++.|.+|++.+++||+++++++|+ +++|||.+|. |+|||. |||+++|.+|++.+++.++.++..+++++.|+++
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~ 703 (725)
T 2wtb_A 624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAF 703 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 467999999999999999999997 8999999999 999999 9999999999999999999999999988789999
Q ss_pred HHHHHHCCCCCccCCceeee
Q 009963 403 IPIMQEDKRAGETTRKGFYL 422 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY~ 422 (521)
|.+|+++| ++||.
T Consensus 704 l~~~~~~g-------~~f~~ 716 (725)
T 2wtb_A 704 LAERGSKG-------VLLSA 716 (725)
T ss_dssp HHHHHHHT-------CCSSS
T ss_pred HHHHHHcC-------CCccc
Confidence 99999985 78985
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=117.09 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=80.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 171 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (273)
T 2uzf_A 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHS-P----------------------------------- 214 (273)
T ss_dssp HHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred HHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHH-HHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEA-EDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~-~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++ ...+++++++.|. +.|..++.|+++++++.+|++||+++
T Consensus 215 ~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~ 265 (273)
T 2uzf_A 215 TALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPD 265 (273)
T ss_dssp HHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCC
Confidence 13446777777 3357889999999 99999999999999999999987664
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-11 Score=132.75 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=79.5
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
++.|.+|++.+++||+++++++|+ +++|||.+|. |+|||. |||+++|.+|++.+++.++.+ ..+++++.|+++
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~ 702 (715)
T 1wdk_A 624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAK 702 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHH
Confidence 468999999999999999999997 8999999999 999999 999999999999999999999 889977789999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009963 403 IPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY 421 (521)
|.+|+++| ++||
T Consensus 703 l~~~~~~g-------~~f~ 714 (715)
T 1wdk_A 703 LREMAKNG-------QSFF 714 (715)
T ss_dssp HHHHHHTT-------CCSC
T ss_pred HHHHHHcC-------CCCC
Confidence 99999985 6788
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-11 Score=118.88 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=80.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecC-CchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVA-PNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~-~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||++++|+||+++||||+||| ++++.++|.++|++++.. |+
T Consensus 165 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~--~~--------------------------------- 209 (263)
T 3lke_A 165 LLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEG--YV--------------------------------- 209 (263)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTS--CH---------------------------------
T ss_pred HHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhC--CH---------------------------------
Confidence 478999999999999999999999 999999999999999886 21
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|.+++...
T Consensus 210 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~ 261 (263)
T 3lke_A 210 -PAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHH 261 (263)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCC
Confidence 1455788999988888899999999999999999999999999999887643
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-10 Score=113.01 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=104.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccc--Cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVL--DY- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~--~~- 221 (521)
+||+|||+|.||..+|..|+++|++|++||+ +++.++... +.|. +.. .. . ..++..++ +.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~-g~-~-~~~~~~~~~~~~~ 66 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRL-GV-K-LNGVEIFWPEQLE 66 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTT-TB-C-CCSEEEECGGGHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCccc-Cc-c-ccceEEecHHhHH
Confidence 4899999999999999999999999999999 888766532 2221 000 00 0 01223344 44
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC------cHHHHHHhhcC--CCceeecccccccCC--
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYS--KDRIVGAHFFSPAHV-- 291 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l------~i~~ia~~~~~--~~r~ig~hf~~P~~~-- 291 (521)
+.+++||+||.|||.. ....++.++.+ +++++++++.+.++ ....+.+.+.. +....+.....|...
T Consensus 67 ~~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~ 143 (335)
T 1txg_A 67 KCLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE 143 (335)
T ss_dssp HHHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH
T ss_pred HHHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH
Confidence 3478999999999977 35678888988 88899888777566 33455555532 110001111233221
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc
Q 009963 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (521)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~ 328 (521)
.....++.+. .+++..+.+.++++..|..+.+..|.
T Consensus 144 ~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di 182 (335)
T 1txg_A 144 VAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI 182 (335)
T ss_dssp HHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred HHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence 1111233332 35778899999999999887777764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-10 Score=113.24 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=92.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||+.||..|+++|++|++||++++.++...+ .|.-. ......+ .+..+++.+++.++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~-~~~~~~~-~~~~~~~~~~~~~a 81 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSP-YVEESKI-TVRATNDLEEIKKE 81 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBT-TBTTCCC-CSEEESCGGGCCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcc-cCCCCee-eEEEeCCHHHhcCC
Confidence 69999999999999999999999999999999987765321 12100 0000000 23445555448899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcC--CC-ceeecccccccC--CCCeEEEEe
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RIVGAHFFSPAH--VMPLLEIVR 299 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~--~~-r~ig~hf~~P~~--~~~lveiv~ 299 (521)
|+||.|||. ..+ .+++.++.+ ++++++|.+.++++. .+++.+.. +. ..+...|..+.+ ...+..++.
T Consensus 82 DvVil~vk~-~~~-~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~ 156 (335)
T 1z82_A 82 DILVIAIPV-QYI-REHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL 156 (335)
T ss_dssp EEEEECSCG-GGH-HHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred CEEEEECCH-HHH-HHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence 999999985 333 445544433 677887776565542 23332211 10 011111111111 122222222
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCc
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~ 328 (521)
+.. + .+.+.+++...|..+.+..|.
T Consensus 157 g~~-~---~~~~~~ll~~~g~~~~~~~di 181 (335)
T 1z82_A 157 AGE-N---SKELQKRISTEYFRVYTCEDV 181 (335)
T ss_dssp EET-T---HHHHHHHHCCSSEEEEEESCH
T ss_pred Eeh-h---HHHHHHHhCCCCEEEEecCch
Confidence 211 2 678889999999887776663
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=116.73 Aligned_cols=122 Identities=18% Similarity=0.302 Sum_probs=83.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.+++..++..|+ +|+++|+++++++.....+.+.. .......++..+++++++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~------------~~~~~~~~i~~t~d~~a~~~ 70 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN 70 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhH------------hhcCCCeEEEECCCHHHHCC
Confidence 599999999999999999999997 99999999887763222221110 00111235666778889999
Q ss_pred CCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHH-hhc-CCCceeec
Q 009963 227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGE-RTY-SKDRIVGA 283 (521)
Q Consensus 227 aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~-~~~-~~~r~ig~ 283 (521)
||+||+++ .++..+++++++.+.+++ |++++ +||..... +.+.. ... .|.|++|+
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~-t~~~~~~~~~~~~rviG~ 143 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAM-TYLAAEVSGFPKERVIGQ 143 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHH-HHHHHHHcCCCHHHEEEC
Confidence 99999997 555678889999999987 66655 34432221 22222 212 25677776
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-11 Score=121.03 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=109.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
++||+|||.|.||.++|..|.++ |++|++.+++.+ ..+.+ .+.|....+ ....
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~d---------~ta~ 113 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEES---------GTLG 113 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTTT---------TCEE
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEec---------CCCC
Confidence 37999999999999999999999 999987776543 22222 123422100 0012
Q ss_pred C-cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHH---hhcCCCceeecccccccCC----
Q 009963 220 D-YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSPAHV---- 291 (521)
Q Consensus 220 ~-~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~---~~~~~~r~ig~hf~~P~~~---- 291 (521)
+ .+.+++||+||.++|.... ..++.++.+.++++++| +.++++++..+.. .++...+++.+||..|.+.
T Consensus 114 s~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~ 190 (525)
T 3fr7_A 114 DIWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL 190 (525)
T ss_dssp EHHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred CHHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence 3 3567899999999997654 36888999999999985 7888999888775 3333457999999998764
Q ss_pred -----------CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEE
Q 009963 292 -----------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323 (521)
Q Consensus 292 -----------~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v 323 (521)
++.. +..++..+.+..+.+..++..+|...+
T Consensus 191 y~~G~~~~g~Gv~~l-iAv~qd~tgea~e~alala~aiG~~~v 232 (525)
T 3fr7_A 191 YVQGKEINGAGINSS-FAVHQDVDGRATDVALGWSVALGSPFT 232 (525)
T ss_dssp HHHHTTSTTCSCCEE-EEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred HhcccccccCCccEE-EEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence 3412 333444566788999999999998754
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=117.04 Aligned_cols=91 Identities=22% Similarity=0.206 Sum_probs=81.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|| +++++.|.++|++++.. |+
T Consensus 186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~--~~---------------------------------- 227 (276)
T 3rrv_A 186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILEL--PQ---------------------------------- 227 (276)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 47899999999999999999999 88999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr 129 (521)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||
T Consensus 228 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 228 QAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 1455788999988888899999999999999999999999999999876
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-11 Score=117.31 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=81.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 168 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~--~p---------------------------------- 211 (289)
T 3h0u_A 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF--PR---------------------------------- 211 (289)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA 127 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~ 127 (521)
.+...+|++++.... +++++++.|.+.|..++.|+++++++.+|++
T Consensus 212 ~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 212 DALIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp HHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 145578899998877 8999999999999999999999999999998
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-11 Score=116.49 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=80.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHH----HHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS----TARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~----~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (521)
|++||++++|+||+++||||+|||++++.+ .|.+++++++.. |+
T Consensus 169 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~--~p------------------------------ 216 (272)
T 1hzd_A 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ--GP------------------------------ 216 (272)
T ss_dssp HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTS--CH------------------------------
T ss_pred HHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhC--CH------------------------------
Confidence 578999999999999999999999887644 556666665543 11
Q ss_pred CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...++++++..|.+.|..++.|+++++++++|++||+++
T Consensus 217 ----~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~ 268 (272)
T 1hzd_A 217 ----VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR 268 (272)
T ss_dssp ----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred ----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 1445788999988888999999999999999999999999999999887654
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-11 Score=118.25 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=79.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 171 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p----------------------------------- 214 (287)
T 3gkb_A 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALP-D----------------------------------- 214 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-T-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998862 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.. ..+++++.|.+.|..++.|+++++++.+|++||+
T Consensus 215 ~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~ 261 (287)
T 3gkb_A 215 GVIEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA 261 (287)
T ss_dssp THHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 2455677777763 3468999999999999999999999999999875
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-10 Score=111.77 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=104.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccC
Q 009963 148 KKVAILGGGLMGSGIATALILS-----N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLD 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-----G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~ 220 (521)
+||+|||+|.||+.+|..|+++ | ++|++||+ ++.++...+. .|..... .-......+..+++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~ 77 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTDN 77 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEESC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEecC
Confidence 6899999999999999999999 9 99999999 6665543210 2210000 00000001222344
Q ss_pred cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeecccccccCC--------
Q 009963 221 YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFSPAHV-------- 291 (521)
Q Consensus 221 ~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~hf~~P~~~-------- 291 (521)
.+.+.++|+||.|||... + .+++.++.+.++++++|++.+.++.. +.+.+.+... +++....+.++..
T Consensus 78 ~~~~~~~D~vil~vk~~~-~-~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~~ 154 (317)
T 2qyt_A 78 PAEVGTVDYILFCTKDYD-M-ERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLITL 154 (317)
T ss_dssp HHHHCCEEEEEECCSSSC-H-HHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEEE
T ss_pred ccccCCCCEEEEecCccc-H-HHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEEE
Confidence 556789999999998765 3 67788888888888888887777776 4555555432 3333323222211
Q ss_pred -CCe-EEEEeC--CCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 292 -MPL-LEIVRT--NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 292 -~~l-veiv~~--~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
... +.++.. +..+.+.. .+.+++...|....+.+|
T Consensus 155 ~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d 193 (317)
T 2qyt_A 155 EADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD 193 (317)
T ss_dssp EEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred cCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence 111 111322 33456667 889999999987777665
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.7e-11 Score=116.49 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=80.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 187 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~-~----------------------------------- 230 (289)
T 3t89_A 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNS-P----------------------------------- 230 (289)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.... ........|.+.+..++.|+++++++.+|++||++.-
T Consensus 231 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f 282 (289)
T 3t89_A 231 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDF 282 (289)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 144467888887643 2334456788889999999999999999999997754
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-11 Score=122.78 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=51.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++|+|+||+++||||+|||+++|+++|.+||++++..+ |
T Consensus 232 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~-p----------------------------------- 275 (334)
T 3t8b_A 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-P----------------------------------- 275 (334)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998862 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|++++.... +..+.+..|.+.+..++.|+++++++.+|++||++.-
T Consensus 276 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f 327 (334)
T 3t8b_A 276 QAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDW 327 (334)
T ss_dssp HHHHHHHHHHHHTCC-CC-----------------------------------
T ss_pred HHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 144578888887654 4555667888899999999999999999999987653
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-11 Score=116.80 Aligned_cols=90 Identities=23% Similarity=0.304 Sum_probs=52.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 212 (258)
T 3lao_A 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAA-P----------------------------------- 212 (258)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~ 126 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|+
T Consensus 213 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ 258 (258)
T 3lao_A 213 LAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV 258 (258)
T ss_dssp HHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 2455789999998888999999999999999999999999999985
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-11 Score=117.11 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=67.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 170 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 213 (276)
T 2j5i_A 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN-P----------------------------------- 213 (276)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHhhc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL--LRSE-TCKSLVHIFFAQR 129 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l--~~s~-~a~~~~~aF~~kr 129 (521)
.+...+|++++.+...+++++++.|.+.+..+ +.|+ ++++++.+|++||
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr 265 (276)
T 2j5i_A 214 VVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK 265 (276)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence 14557899999888889999999999888776 6699 9999999999987
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.5e-11 Score=116.11 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=70.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 167 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 210 (263)
T 3l3s_A 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGALAAR--NQ---------------------------------- 210 (263)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA 127 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~ 127 (521)
.+...+|++++.....+++++++.|.+.|..++.|+++++++.+|-.
T Consensus 211 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~ 257 (263)
T 3l3s_A 211 APLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEG 257 (263)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Confidence 14557899999998899999999999999999999999999999964
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-10 Score=114.41 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=124.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
.+.+|+|||+|.+|..+|.+|++.|++|+.+|+|+++++...+. +...+.+.++. +++++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~ 87 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF 87 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence 47899999999999999999999999999999999998875421 12222222222 35677
Q ss_pred ccCcc-cccCCCEEEEeccc--------chhhHHHHHHHHHhhCC---CCceEEecCCcCcHH---HHHH-hhcCCCcee
Q 009963 218 VLDYE-SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCP---PHCILASNTSTIDLN---LIGE-RTYSKDRIV 281 (521)
Q Consensus 218 ~~~~~-~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~---~~~il~sntS~l~i~---~ia~-~~~~~~r~i 281 (521)
+++.+ .+++||++|.|||. |+..-....+.+.+.++ ++.+++ .-||+++. ++.. .+.... -
T Consensus 88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV-~eSTVppGtte~~~~~~l~~~~--~ 164 (444)
T 3vtf_A 88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVV-VKSTVPPGTTEGLVARAVAEEA--G 164 (444)
T ss_dssp CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE-ECSCCCTTTTTTHHHHHHHTTT--T
T ss_pred EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE-EeCCCCCchHHHHHHHHHHHhC--C
Confidence 88874 58999999999974 23334455566666653 455554 45666553 2221 111110 0
Q ss_pred eccc---ccccCCCCe---------EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc----chhhchH---HHHHH
Q 009963 282 GAHF---FSPAHVMPL---------LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG----FAVNRMF---FPYTQ 342 (521)
Q Consensus 282 g~hf---~~P~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G----fi~nRil---~~~~~ 342 (521)
|..| ++|-...+. --+|-| .+++.+.+.+.++.+.+....++.+.... .+.|-++ .+++|
T Consensus 165 ~~~f~v~~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~N 243 (444)
T 3vtf_A 165 GVKFSVASNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFAN 243 (444)
T ss_dssp TCCCEEEECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeecCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 244322111 112322 14577788888888888765555442212 2334333 36789
Q ss_pred HHHHHHH-cCCCHHHHHHHHH
Q 009963 343 AAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 343 ea~~l~~-~G~~~~~ID~a~~ 362 (521)
|...+.+ .|++..+|-.++.
T Consensus 244 Ela~ice~~GiDv~eV~~a~~ 264 (444)
T 3vtf_A 244 EVGLLAKRLGVDTYRVFEAVG 264 (444)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhc
Confidence 9888775 6999988877774
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=114.06 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=82.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||.++|..++.+|+ +|+++|+++++++.....+ ..+. . .. ...++.. +++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~-~---~~-~~~~i~~-~~~~a~~ 66 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAA-P---VS-HGTRVWH-GGHSELA 66 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhh-h---hc-CCeEEEE-CCHHHhC
Confidence 489999999999999999999999 9999999988765321111 1111 0 00 0123333 4678899
Q ss_pred CCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceE--EecCCcCcHHHHHHhhcCCCceeec
Q 009963 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il--~sntS~l~i~~ia~~~~~~~r~ig~ 283 (521)
+||+||+++ |. +..+++++++++.+++ +++++ +||.+.+....+.... .|.|++|+
T Consensus 67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 999999999 43 4567889999999986 66654 4666554433444444 67788876
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=113.22 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=74.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 214 (272)
T 3qk8_A 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQG--AQ---------------------------------- 214 (272)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhh---CChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|++++.... .++++.++.| ..++.|+++++++.+|++||++.-
T Consensus 215 ~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f 266 (272)
T 3qk8_A 215 NAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARF 266 (272)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCC
Confidence 144467777776543 3344555544 478899999999999999987653
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=115.19 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=106.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++||+|||+|.||+.+|..|+++|++|++||++ +.++... +.|......-.....++..+++.+++.+
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE 70 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence 469999999999999999999999999999996 4444321 2221100000001112344556666789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc-------------------HH-HHHHhhcCCCceeec-cc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-------------------LN-LIGERTYSKDRIVGA-HF 285 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-------------------i~-~ia~~~~~~~r~ig~-hf 285 (521)
+|+||.|||.. .+ .++++++.+.++++++|+|.+.+++ .. .+.+.++ ..++++. -+
T Consensus 71 ~D~Vilavk~~-~~-~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~ 147 (335)
T 3ghy_A 71 QDVVIVAVKAP-AL-ESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH 147 (335)
T ss_dssp CSEEEECCCHH-HH-HHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred CCEEEEeCCch-hH-HHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence 99999999874 33 4778888888899999988888853 22 4555553 2344432 22
Q ss_pred c-----cccC---CCC-eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 286 F-----SPAH---VMP-LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 286 ~-----~P~~---~~~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+ .|-. ... -+.+-.....+.+..+.+.+++...|....+..|..+
T Consensus 148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 201 (335)
T 3ghy_A 148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR 201 (335)
T ss_dssp CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence 1 2211 111 1222222233456778889999999988777777655
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-10 Score=111.38 Aligned_cols=120 Identities=18% Similarity=0.325 Sum_probs=82.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
||+|||+|.||.+++..++..|+ +|+++|+++++++.....+.+.. ...+ ...++..+++++++++|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~---~~~~---------~~~~i~~t~d~~a~~~a 68 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAA---AELG---------VDIRISGSNSYEDMRGS 68 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHH---HHHT---------CCCCEEEESCGGGGTTC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhh---hhcC---------CCeEEEECCCHHHhCCC
Confidence 69999999999999999998898 79999999887754222221110 0000 12346666788999999
Q ss_pred CEEEEe--------------cccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc----C-CCceeec
Q 009963 228 DMVIEA--------------IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----S-KDRIVGA 283 (521)
Q Consensus 228 DlVIea--------------v~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~----~-~~r~ig~ 283 (521)
|+||++ +..+..+++++.+++.+++ |++++...| -|++.+...+. . |.|++|+
T Consensus 69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t--NPv~~~t~~~~k~~~~p~~rviG~ 140 (308)
T 2d4a_B 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITT--NPVDAMTYVMYKKTGFPRERVIGF 140 (308)
T ss_dssp SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeC--CchHHHHHHHHHhcCCChhhEEEe
Confidence 999999 5566678899999999987 566433222 25554443332 2 4577776
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-11 Score=114.63 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=67.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 199 (256)
T 3pe8_A 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN--NQ---------------------------------- 199 (256)
T ss_dssp HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL---LRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l---~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|++++.+...+++++++.|.+.|..+ ..+++.++.+.+|++|+++
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~ 253 (256)
T 3pe8_A 200 KAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRS 253 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCc
Confidence 14557889999988889999999999998765 5566779999999998765
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=110.88 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=76.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+.+ +.+.+++++++.. |+
T Consensus 163 llltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~--~p---------------------------------- 204 (267)
T 3hp0_A 163 MTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRL--NK---------------------------------- 204 (267)
T ss_dssp HHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999998644 3467888888775 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~ 134 (521)
.|...+|++++... .+.+++++.|.+.|..++.|+++++++.+|++||+++..
T Consensus 205 ~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~ 257 (267)
T 3hp0_A 205 KGIAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWE 257 (267)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC---
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence 14557888888764 346788889999999999999999999999999987654
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=111.32 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=79.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.+++++++.. |+
T Consensus 154 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 197 (243)
T 2q35_A 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKS--PR---------------------------------- 197 (243)
T ss_dssp HHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~ 126 (521)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+||
T Consensus 198 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~ 243 (243)
T 2q35_A 198 LSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF 243 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence 1444688888888777889999999999999999999999999876
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-11 Score=111.24 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=100.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||..+|..|.++|++|++||++++ .+... ..| +..++..+.+++|
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~a 74 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASRS 74 (201)
Confidence 5899999999999999999999999999999876 32211 111 1112223457889
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--------HHHHHhhcCCCceeecccccccCCCC-eE---
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGERTYSKDRIVGAHFFSPAHVMP-LL--- 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--------~~ia~~~~~~~r~ig~hf~~P~~~~~-lv--- 295 (521)
|+||.|||.. .+. .++ ++.. ..+++++++.+++++. +.+.+.++. .+++...++.|+.... ..
T Consensus 75 DvVilav~~~-~~~-~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g 149 (201)
T 2yjz_A 75 DVIVLAVHRE-HYD-FLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA 149 (201)
Confidence 9999999975 343 444 4443 3467888887777753 445444432 4666666666654332 11
Q ss_pred ---EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 296 ---EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 296 ---eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.++.+. +++..+.+.++++.+|+.++.+++
T Consensus 150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS 182 (201)
Confidence 244443 577889999999999999998875
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=109.98 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=76.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|++ +++|.++|++++..+ |
T Consensus 171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~-p----------------------------------- 210 (264)
T 3he2_A 171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLA-P----------------------------------- 210 (264)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCC-H-----------------------------------
Confidence 578999999999999999999986 467899999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++.. .+++++++.|.+.|..++.|+|+++++.+|++||++.-
T Consensus 211 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f 261 (264)
T 3he2_A 211 LAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKF 261 (264)
T ss_dssp HHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 1445678888876 35667788999999999999999999999999987653
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-08 Score=100.22 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=108.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||+.+|..|+++|++|++|++++ .+... +.|.. ....-...+..+..+++.+.+.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 69 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP 69 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence 589999999999999999999999999999986 23221 12210 00000000012333455666789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeecccc------cccC---CCC-eE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF------SPAH---VMP-LL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~hf~------~P~~---~~~-lv 295 (521)
+|+||.||+.... .++++++.+.++++++|+|...++.. +.+.+.++. .++++...+ .|-. ..+ .+
T Consensus 70 ~D~vilavk~~~~--~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~ 146 (312)
T 3hn2_A 70 MDLVLVGLKTFAN--SRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI 146 (312)
T ss_dssp CSEEEECCCGGGG--GGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred CCEEEEecCCCCc--HHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence 9999999987642 47889999999999999999999964 556666543 344443211 2211 111 12
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccc
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf 331 (521)
.+-..+..+.+..+.+.+++...|....+..|.-+.
T Consensus 147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~ 182 (312)
T 3hn2_A 147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRA 182 (312)
T ss_dssp EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHH
Confidence 222333345567788999999999877776665443
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-10 Score=109.95 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=70.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.+.+++++++.. |+
T Consensus 159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 202 (254)
T 3isa_A 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL--DP---------------------------------- 202 (254)
T ss_dssp HHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~ 134 (521)
.+...+|+++.. +.++.|.+.|..++.|+++++++.+|++||++...
T Consensus 203 ~a~~~~K~~l~~-------~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~ 249 (254)
T 3isa_A 203 ATRATLHRVLRD-------DHDDADLAALARSAAQPGFKARIRDYLAQPAAEGH 249 (254)
T ss_dssp HHHHHHHHHHSC-------CCHHHHHHHHHHHHHSTTHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhh-------hhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence 133345655521 23456888999999999999999999999987653
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=110.73 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=82.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHh--------------hhccC-------CCcchhhccc-CCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALD--------------ILEHR-------RPWVATLYKT-DKIEP 58 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~--------------l~~~~-------~p~~~~~~~~-~~~~~ 58 (521)
|+|||++++|++|+++||||+|||++++.+.+..+++- +.... .......... ..+..
T Consensus 165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~ 244 (363)
T 3bpt_A 165 LALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA 244 (363)
T ss_dssp HHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCC
Confidence 57899999999999999999999999987655443220 10000 0000000000 00000
Q ss_pred chHHHHHHH--------HHHHHHHHhCC-CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hh
Q 009963 59 LGEAREIFK--------FARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ 128 (521)
Q Consensus 59 ~~~~~~~~~--------~a~~~~~~~~~-~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~-~k 128 (521)
. .....++ .+.+.+.+-.. ++.+...+|++++.+...+++++++.|.+.+..++.|+++++++++|+ +|
T Consensus 245 ~-~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK 323 (363)
T 3bpt_A 245 N-TVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDK 323 (363)
T ss_dssp S-SHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSC
T ss_pred C-CHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCC
Confidence 0 0000011 11122333233 455788899999999888999999999999999999999999999999 66
Q ss_pred -ccC
Q 009963 129 -RGT 131 (521)
Q Consensus 129 -r~~ 131 (521)
|++
T Consensus 324 ~r~P 327 (363)
T 3bpt_A 324 DQSP 327 (363)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=106.90 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=77.3
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
++.+||+|||+|.||.++|..++.+|+ +|+++|++++.++.....+.+.. .. ....++..+++++
T Consensus 19 ~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~----~~---------~~~~~i~~t~d~~ 85 (330)
T 3ldh_A 19 RSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS----LF---------LHTAKIVSGKDYS 85 (330)
T ss_dssp CCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG----GG---------SCCSEEEEESSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh----hc---------ccCCeEEEcCCHH
Confidence 356899999999999999999999998 99999999988765433332211 00 0124566778899
Q ss_pred cccCCCEEEEe--------------cccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 223 SFKDVDMVIEA--------------IIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 223 ~~~~aDlVIea--------------v~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
++++||+||.+ +.++..+++++..++.+++ |++++...|
T Consensus 86 ~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvt 138 (330)
T 3ldh_A 86 VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHP 138 (330)
T ss_dssp SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCC
Confidence 99999999977 4556678888889999985 566554333
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=111.08 Aligned_cols=117 Identities=14% Similarity=0.021 Sum_probs=83.3
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||+|.||..+|..+. ..|++|++||++++..+... +.| +....++ +.++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 219 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-----------ALG-------------AERVDSLEELAR 219 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-----------hcC-------------cEEeCCHHHHhc
Confidence 58999999999999999999 89999999999876543321 111 1122344 3478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcCC-Cceeecccccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFFSP 288 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~~-~r~ig~hf~~P 288 (521)
+||+|+.++|.+.+.+.-+.+++.+.++++++|++.+++ .+...+.+.+... -...|+++|.|
T Consensus 220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 999999999998776655545666778999988744443 3445777777542 22367899874
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=102.24 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=79.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 224 (521)
+||+|||+|.||.++|..|+.+| ++|+++|+++++++.....+.+.. . . ....+.. +++++++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~----~---~-------~~~~~~~~~~d~~~~ 67 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM----A---N-------LEAHGNIVINDWAAL 67 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG----G---G-------SSSCCEEEESCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh----h---h-------cCCCeEEEeCCHHHh
Confidence 68999999999999999999999 799999999988765432221110 0 0 0011222 3567889
Q ss_pred cCCCEEEEecccch------------------hhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhh--cCCCceeec
Q 009963 225 KDVDMVIEAIIENV------------------SLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERT--YSKDRIVGA 283 (521)
Q Consensus 225 ~~aDlVIeav~e~~------------------~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~--~~~~r~ig~ 283 (521)
++||+||.|++... .+.+++++++.++++ +++++..|....+ +.+.... -.|.|++|+
T Consensus 68 ~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~ 146 (309)
T 1hyh_A 68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIGT 146 (309)
T ss_dssp TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEeec
Confidence 99999999998644 245788888888775 5555433222222 2333221 235678777
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=102.02 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=70.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.+||+|||+|.||.++|..++.+|+ +|+++|++ ++.++.....+.+. . .......++..++++++
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~---~---------~~~~~~~~i~~t~d~~a 75 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEA---S---------PVQGFDANIIGTSDYAD 75 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHH---H---------HHHTCCCCEEEESCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHh---h---------hhccCCCEEEEcCCHHH
Confidence 4799999999999999999999999 99999999 44443221111111 0 11112346777778999
Q ss_pred ccCCCEEEEecc--c------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 224 FKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 224 ~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+++||+||+++. . +..+.+++...+.+++ |++++...|
T Consensus 76 ~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvs 127 (315)
T 3tl2_A 76 TADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLT 127 (315)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECC
Confidence 999999999972 1 2335566777788876 555554433
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=110.00 Aligned_cols=117 Identities=17% Similarity=0.092 Sum_probs=82.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..+...|++|++||++++..+... +.| +..+ ++ +.+++
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~ 210 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ 210 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence 6899999999999999999999999999999876443321 111 1122 44 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcC-CCceeeccccccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFSPA 289 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~-~~r~ig~hf~~P~ 289 (521)
||+||.++|.+.+.+..+.+++.+.+++++++++.+++ .+...+.+.+.. .-...++++|.|.
T Consensus 211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276 (330)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence 99999999987665544445566778999988644333 344677766643 2334678988654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=102.94 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=106.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCH-HHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQ-EKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||+.+|..|+++|++|++|++++. +... +.|. ++. ..-...+..+..+++.+++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~-----------~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~ 69 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVK-----------AKGIRIRSATLGDYTFRPAAVVRSAAELE 69 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHH-----------HHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHH-----------hCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence 6899999999999999999999999999999862 3221 1121 000 00000001233445665554
Q ss_pred -CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeec-ccc-----cccCC---CC-
Q 009963 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAHV---MP- 293 (521)
Q Consensus 226 -~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~-hf~-----~P~~~---~~- 293 (521)
++|+||.|||.... .++++++.+.+++++++++...++.. +.+.+.++.. ++++. -++ .|-.+ .+
T Consensus 70 ~~~DlVilavK~~~~--~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~ 146 (320)
T 3i83_A 70 TKPDCTLLCIKVVEG--ADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYG 146 (320)
T ss_dssp SCCSEEEECCCCCTT--CCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEecCCCCh--HHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCC
Confidence 89999999987653 36788899999999999888888864 5666666433 44432 222 22211 11
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
-+.+-..+..+.+..+.+.+++...|....+..|..+
T Consensus 147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~ 183 (320)
T 3i83_A 147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITT 183 (320)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHH
T ss_pred EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHH
Confidence 1222222234456778899999999988777776544
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-09 Score=105.08 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+++||+|||+|.||.++|..++..|. +|+++|++++.++.....+.+. . ..+. ...++. ++++++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~----~--~~~~------~~~~i~-~~~~~a 71 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG----K--VFAP------KPVDIW-HGDYDD 71 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----T--TSSS------SCCEEE-ECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH----h--hhcC------CCeEEE-cCcHHH
Confidence 45799999999999999999988885 8999999987554322221110 0 0000 001222 345788
Q ss_pred ccCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh----cC-CCceeec
Q 009963 224 FKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA 283 (521)
Q Consensus 224 ~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~----~~-~~r~ig~ 283 (521)
+++||+||+++ .++..+++++.+.+.+++ |++++...| -|++.+...+ .. |.|++|+
T Consensus 72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~t--NPv~~~~~~~~~~s~~p~~rviG~ 147 (316)
T 1ldn_A 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVAT--NPVDILTYATWKFSGLPHERVIGS 147 (316)
T ss_dssp TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECS--SSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeC--CchHHHHHHHHHHhCCCHHHEEec
Confidence 99999999994 444578999999999987 455433222 2555444333 12 4577765
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=102.57 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=80.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+... .. + ...++..+++++++
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~--~---------~~~~v~~t~d~~a~ 73 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VD--G---------FDAKFTGANDYAAI 73 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HH--T---------CCCCEEEESSGGGG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hc--C---------CCCEEEEeCCHHHH
Confidence 45799999999999999999999999 999999999876533222222110 00 0 11345666788999
Q ss_pred cCCCEEEEecc--c------------chhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeecc
Q 009963 225 KDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAH 284 (521)
Q Consensus 225 ~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~h 284 (521)
++||+||.++. . +..+.+++...+.+++ |++++...|....+ ..+...... |.|++|+.
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~ 149 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA 149 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence 99999999863 1 2234556667788887 56665433332221 122222232 35677664
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=106.29 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=72.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 179 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 222 (277)
T 4di1_A 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC--PP---------------------------------- 222 (277)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTS--CH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~ 116 (521)
.++..+|++++.+...+++++++.|.+.|..++.|+
T Consensus 223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~ 258 (277)
T 4di1_A 223 RALAAAKAVINDVFELEATERAAAERRRYVELFAAG 258 (277)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence 255678999999999999999999999999999998
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-10 Score=93.77 Aligned_cols=54 Identities=9% Similarity=-0.141 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 464 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 464 ~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
...|.+|++.+++|||++|+++++++++||| .+|.++.|||+|||+++|.+|-.
T Consensus 16 ~gfi~nRll~~~~~eA~~ll~eGva~~~dID--~a~~~g~G~p~GPf~~~D~~Gld 69 (110)
T 3ctv_A 16 DKINPMDFTFVEINEAVKLVEMGVATPQDID--TAIKLGLNRPFGPFELAKQFGAE 69 (110)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTSSCHHHHH--HHHHHHTTCSSCHHHHHHHHCHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHcCCCCccHHHHHHHHHHH
Confidence 4579999999999999999999999999999 99999999999999999998843
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-09 Score=103.12 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=80.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+... ......++..+++++++
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~------------~~~~~~~v~~t~d~~a~ 71 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKDL 71 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh------------hcCCCcEEEEcCCHHHH
Confidence 35799999999999999999999998 999999999876532222211100 00011245556778999
Q ss_pred cCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH----HHhhcC-CCceeecc
Q 009963 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI----GERTYS-KDRIVGAH 284 (521)
Q Consensus 225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i----a~~~~~-~~r~ig~h 284 (521)
++||+||.+.. .+..+.+++...+.+++ |++++...|. |++.+ ...... |.|++|+.
T Consensus 72 ~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtN--Pvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITN--PLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS--SHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecC--chHHHHHHHHHhcCCCHHHEEeec
Confidence 99999999862 13345666777788887 5665543332 33322 222233 36777764
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=101.78 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=68.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||.++|..|+.+ |++|+++|+++++++.....+.+... ......++..++++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~ 68 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA 68 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence 4899999999999999999985 78999999999877642211111100 001123566677888899
Q ss_pred CCCEEEEecccc--------------hhhHHHHHHHHHhhCCCCceEE
Q 009963 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+||+||+|++.. ..+.+++.+.+.+++ ++++++
T Consensus 69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~vi 115 (310)
T 1guz_A 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIII 115 (310)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEE
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEE
Confidence 999999999532 134566777788886 455443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-08 Score=100.55 Aligned_cols=124 Identities=23% Similarity=0.368 Sum_probs=81.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+++||+|||+|.||..+|..|+.+|+ +|+++|++++.++.....+.+.+ . +.. ..++..++++++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~----~---~~~------~~~v~~~~~~~~ 72 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS----S---FYP------TVSIDGSDDPEI 72 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG----G---GST------TCEEEEESCGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh----h---hcC------CeEEEeCCCHHH
Confidence 34799999999999999999999999 99999999877652111111110 0 000 123444446778
Q ss_pred ccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhh-c-CCCceeec
Q 009963 224 FKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERT-Y-SKDRIVGA 283 (521)
Q Consensus 224 ~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~-~-~~~r~ig~ 283 (521)
+++||+||.++. ++..+.++++.++.++ .+++++++.+.++.+. .+.... . .+.+++|.
T Consensus 73 ~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 73 CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 999999999993 2235666888888886 5777776666555443 333211 2 24577764
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-09 Score=105.66 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=80.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++. .|.
T Consensus 204 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~--~p~---------------------------------- 247 (305)
T 3m6n_A 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR--TPH---------------------------------- 247 (305)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT--CHH----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh--ChH----------------------------------
Confidence 57899999999999999999999999999999999999864 132
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
+...+|++++.....+++++++.|.+.|..++.|++....+..++.....+
T Consensus 248 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~ 298 (305)
T 3m6n_A 248 -AWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSR 298 (305)
T ss_dssp -HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhh
Confidence 455789999999999999999999999999999988877666555444433
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-09 Score=109.41 Aligned_cols=130 Identities=8% Similarity=-0.020 Sum_probs=84.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHH---H----------------HHHHHHhhhccC---CCcchh---hccc-C
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS---T----------------ARQWALDILEHR---RPWVAT---LYKT-D 54 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~---~----------------A~~~a~~l~~~~---~p~~~~---~~~~-~ 54 (521)
|+|||++|+|++|+++||||+|||++++.+ + +.++++++.... .|.... .... .
T Consensus 205 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~ 284 (407)
T 3ju1_A 205 LGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDR 284 (407)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHH
T ss_pred HHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Confidence 578999999999999999999999998877 3 333433322110 000000 0000 0
Q ss_pred CCCCchHHHHHH----------HHHHHHHHH-hCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009963 55 KIEPLGEAREIF----------KFARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH 123 (521)
Q Consensus 55 ~~~~~~~~~~~~----------~~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~ 123 (521)
.+. . ....++ ..++..+.+ ..+.+.+...+|++++.+...+++++++.|.+.+..++.++|++++++
T Consensus 285 ~f~-~-sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvr 362 (407)
T 3ju1_A 285 LMA-G-SLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVR 362 (407)
T ss_dssp HTC-S-CHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred Hhc-C-CHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 000 0 000000 011111122 234566899999999999999999999999999999999999999999
Q ss_pred HHH-hh-ccCC
Q 009963 124 IFF-AQ-RGTS 132 (521)
Q Consensus 124 aF~-~k-r~~~ 132 (521)
+|+ +| |+++
T Consensus 363 AflidKdr~P~ 373 (407)
T 3ju1_A 363 ALLIDKDKQPK 373 (407)
T ss_dssp HHTTSCCCCCC
T ss_pred HHHhcCCcCCC
Confidence 998 66 5443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=108.91 Aligned_cols=116 Identities=17% Similarity=0.091 Sum_probs=81.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
-++|+|||+|.||..+|..+...|++|++||++++. +... +.| +.. .++ +.++
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~ 203 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR 203 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence 368999999999999999999999999999999865 3211 112 112 244 3478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcC-CCceeecccccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSP 288 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~-~~r~ig~hf~~P 288 (521)
+||+||.++|.+.+.+.-+.+++.+.+++++++++.+.+..+ ..+.+.+.. +-...|+|+|.|
T Consensus 204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 999999999998765544435666778999988644433333 356666643 223467898873
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-09 Score=102.11 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=68.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.++|.++|++++..+ |
T Consensus 181 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 224 (263)
T 2j5g_A 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQP-T----------------------------------- 224 (263)
T ss_dssp HHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.....++++++..|. ..+++++|++||.
T Consensus 225 ~a~~~~K~~l~~~~~~~l~~~l~~e~-----------~~eg~~af~~~~~ 263 (263)
T 2j5g_A 225 LNLRYTRVALTQRLKRLVNEGIGYGL-----------ALEGITATDLRNT 263 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHH-----------HHhhHHHHHhccC
Confidence 14446888888877667777776654 4599999999863
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-09 Score=111.17 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=71.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++|+|+||+++||||+|||++++.+++.+++.+++.
T Consensus 347 llLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~--------------------------------------- 387 (440)
T 2np9_A 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG--------------------------------------- 387 (440)
T ss_dssp HHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---------------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---------------------------------------
Confidence 57899999999999999999999999999999998877532
Q ss_pred chHHHHHHHHHHhhhCChH---HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPR---AGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~---~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.++..+|++++.+.. +.+ +.+..|...+..++.|+++++++.+|++||+
T Consensus 388 ~Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~ 439 (440)
T 2np9_A 388 DAVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439 (440)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 134467888877644 443 5566778889999999999999999999875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-08 Score=100.82 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=72.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhhhccc-ccccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKTISLL-TGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~~~~i-~~~~~~~~ 223 (521)
.+||+|||+|.||..+|..|+++|++|+++|++++.++...+ .+.+. ..... ...++ ..++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLA-GTAHPDLLTSDIGL 71 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCC-EEECCSEEESCHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHh-----------cCCeEEeccccc-cccccceecCCHHH
Confidence 369999999999999999999999999999999988765432 11000 00000 00122 23445543
Q ss_pred -ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+.++|+||.|+|.... .+++.++.+.+++++++++..
T Consensus 72 ~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~ 109 (359)
T 1bg6_A 72 AVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILNP 109 (359)
T ss_dssp HHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESS
T ss_pred HHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcC
Confidence 7899999999998764 678889998899999776653
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=104.26 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCC-CC----HHHHHhhhcccc-
Q 009963 147 VKKVAILGGGLMGSGIATALIL-SNYPVILKE---VNEKFLEAGIGRVRANLQSRVKKGK-MT----QEKFEKTISLLT- 216 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d---~~~~~~~~~~~~i~~~~~~~~~~g~-~~----~~~~~~~~~~i~- 216 (521)
++||+|||+|.||..+|..|++ +|++|++|| ++++.++...+ +.|. +. ..+......++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 71 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQTEVKSRPKV 71 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEEEEEECCSE
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccceeeccceE
Confidence 3699999999999999999988 599999999 87777665321 1110 00 000000012333
Q ss_pred cccCcc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 217 GVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 217 ~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
.+++.+ .+.+||+||+|||... ..++++++.+.++++++|++++++..++
T Consensus 72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G~~ 122 (404)
T 3c7a_A 72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAGFE 122 (404)
T ss_dssp EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTTHH
T ss_pred EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCccHH
Confidence 455654 4789999999999875 5789999999999999999976666544
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-09 Score=108.07 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=79.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..+...|++|++||++++... |. ....++ +.+++
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g~-------------~~~~~l~ell~~ 215 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------NY-------------TYYGSVVELASN 215 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------CS-------------EEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------Cc-------------eecCCHHHHHhc
Confidence 5899999999999999999999999999999875321 11 123344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcC-CCceeeccccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFS 287 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~-~~r~ig~hf~~ 287 (521)
||+||.++|.+.+.+.-+-+++.+.++++++|++.+++.. ...+.+.+.. ..+..++++|.
T Consensus 216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 9999999998766544433455566789998865444433 3577776643 34567888886
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-09 Score=106.51 Aligned_cols=112 Identities=24% Similarity=0.187 Sum_probs=79.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..+...|++|++||++++. +.+. +.| +..+ ++ +.+++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~ 200 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK 200 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence 58999999999999999999999999999999865 2211 111 1122 44 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH---HHHHHhhcC-CCceeeccccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYS-KDRIVGAHFFS 287 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i---~~ia~~~~~-~~r~ig~hf~~ 287 (521)
||+||.++|.+.+.+.-+-+++.+.++++ +++ |+|...+ .++.+.+.. .....|+++|.
T Consensus 201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLV-NIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE-ECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE-ECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 99999999998766554444555678888 765 5554332 356666643 23457899987
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-08 Score=100.21 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred eEEEEEeCChhh--HHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMG--SGIATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG--~~iA~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.|| .++|..++.. |.+|++||++++.++...... ........ ...+++.++|+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~----~~~l~~~~--------~~~~I~~ttD~ 71 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIA----KKYVEEVG--------ADLKFEKTMNL 71 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHH----HHHHHHTT--------CCCEEEEESCH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHH----HHHhccCC--------CCcEEEEECCH
Confidence 599999999975 5557777754 889999999999887754332 22222111 12467778887
Q ss_pred -ccccCCCEEEEecc
Q 009963 222 -ESFKDVDMVIEAII 235 (521)
Q Consensus 222 -~~~~~aDlVIeav~ 235 (521)
+++++||+||++++
T Consensus 72 ~eal~dAD~VIiaag 86 (480)
T 1obb_A 72 DDVIIDADFVINTAM 86 (480)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 77999999999995
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=93.11 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=68.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||.++|..|+.+|+ +|.+||++++.++.-...+.+... ..+ ...++..++++++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~---~~~---------~~~~i~~t~d~~a~~ 68 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GID---------KYPKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH---TTT---------CCCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhh---hcC---------CCCEEEEeCCHHHhC
Confidence 589999999999999999999998 999999999886532212211100 000 113466666788999
Q ss_pred CCCEEEEecccc--------------hhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.+..-. ..+-+++.+.+.+++ |+++++..|
T Consensus 69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs 118 (294)
T 1oju_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT 118 (294)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence 999999987321 123344555677764 566665444
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=97.06 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=64.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 159 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 202 (232)
T 3ot6_A 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI--NM---------------------------------- 202 (232)
T ss_dssp HHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (521)
.+...+|++++.+...+++++++.|.+.|
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~ 231 (232)
T 3ot6_A 203 NAHKKTKLKVRKGLLDTLDAAIEQDRQHM 231 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence 14557899999988889999999998876
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.2e-08 Score=104.35 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=96.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||+++|..+...|++|++||++.+. +.+. +.|. ... ++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~-------------~~~-~l~e~~~~ 196 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLGI-------------ELL-SLDDLLAR 196 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHTC-------------EEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCc-------------EEc-CHHHHHhc
Confidence 68999999999999999999999999999998642 2211 1121 112 34 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCC------Cceeecccc--cccCCCCeEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSK------DRIVGAHFF--SPAHVMPLLE 296 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~------~r~ig~hf~--~P~~~~~lve 296 (521)
||+|+.|+|.....+.-+-+++.+.+++++++++.+.+-.++ .+.+.+... -.|++.||. +|-...+-+.
T Consensus 197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi 276 (529)
T 1ygy_A 197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV 276 (529)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence 999999999875544333234666789999887655443333 455655321 134555553 2222345677
Q ss_pred EEeCCC-CcHHHHHH-----HHHHHHhcCCeE
Q 009963 297 IVRTNQ-TSPQVIVD-----LLDIGKKIKKTP 322 (521)
Q Consensus 297 iv~~~~-t~~e~~~~-----~~~l~~~lGk~~ 322 (521)
++|+.. +++++.+. +.++...++..+
T Consensus 277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888877 67777664 666666665443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-08 Score=99.95 Aligned_cols=124 Identities=13% Similarity=0.006 Sum_probs=84.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++..+. .....++ +.+++
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~ 173 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ 173 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence 68999999999999999999999999999998753211 1123344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc-CCCceeecccc-----cccCCCCeEEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFF-----SPAHVMPLLEIV 298 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~-~~~r~ig~hf~-----~P~~~~~lveiv 298 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+++ +.-..+.+.+. ..-...++-.| +|-...+-+.++
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT 253 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS 253 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence 99999999977666544446667789999998744433 33456666663 22333444444 333344556666
Q ss_pred eC
Q 009963 299 RT 300 (521)
Q Consensus 299 ~~ 300 (521)
|+
T Consensus 254 PH 255 (290)
T 3gvx_A 254 PH 255 (290)
T ss_dssp CS
T ss_pred cc
Confidence 65
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-08 Score=97.57 Aligned_cols=83 Identities=6% Similarity=0.034 Sum_probs=62.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCc-----hHHHHHH-HHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPN-----QLVSTAR-QWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQAR 74 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~-----~l~~~A~-~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 74 (521)
|++||++++|+||+++||||+|||++ ++++++. ++|++++.. |+
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~--~~---------------------------- 226 (280)
T 1pjh_A 177 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL--YL---------------------------- 226 (280)
T ss_dssp HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTC--CH----------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcC--CH----------------------------
Confidence 57899999999999999999999985 7888885 899998875 21
Q ss_pred HhCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 75 KQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 75 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|++++.... ..+. ...++++++++.+|.++|.+
T Consensus 227 ------~a~~~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~ 265 (280)
T 1pjh_A 227 ------PSCLGMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPL 265 (280)
T ss_dssp ------HHHHHHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHH
T ss_pred ------HHHHHHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccH
Confidence 134467777776542 2222 12478888888888887765
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=2.9e-07 Score=92.34 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=70.7
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
.+.+||+|||+|.||.++|..++.+|+ +|+++|+++++++.-...+.+.. ... ....+..+.+++
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~----~~~---------~~~~i~~~~d~~ 83 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS----LFL---------KTPKIVSSKDYS 83 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG----GGC---------SCCEEEECSSGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh----hcc---------CCCeEEEcCCHH
Confidence 346799999999999999999999998 89999999887665332222110 000 012345567889
Q ss_pred cccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 223 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
++++||+||.+.- .+..+.+++.+.+.+++ |++++...|
T Consensus 84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvt 136 (331)
T 4aj2_A 84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVS 136 (331)
T ss_dssp GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 9999999998862 11234455666778875 556554444
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-08 Score=96.08 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=64.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.++|.++|++++.. |+
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 202 (233)
T 3r6h_A 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL--NQ---------------------------------- 202 (233)
T ss_dssp HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ 110 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~ 110 (521)
.+...+|++++.....+++++++.|.+.|.
T Consensus 203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~f~ 232 (233)
T 3r6h_A 203 QAHNATKLRARAEALKAIRAGIDGIEAEFG 232 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 145578899998888889999999988873
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-07 Score=92.31 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=66.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||.++|..++.+|+ +|+++|++++.++.-...+.+.... . + ...++..+.++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~--~---------~~~~v~~~~~~~a~~ 68 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-H--G---------FDTRVTGTNDYGPTE 68 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCEEEEESSSGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-c--C---------CCcEEEECCCHHHhC
Confidence 589999999999999999999987 9999999998765422222211000 0 0 001344456789999
Q ss_pred CCCEEEEecccc--------------hhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.+..-. ..+-+++...+.+++ |++++...|
T Consensus 69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt 118 (314)
T 3nep_X 69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVA 118 (314)
T ss_dssp TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 999999987322 123344445667765 566655444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.1e-07 Score=94.82 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=78.3
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.+ |.++|..|+.. +.+|++||++++.++... .+.+.+.. ..+ ...++..++|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~-~~~~~~l~--~~~---------~~~~I~~t~D~ 96 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA-GACDVFIR--EKA---------PDIEFAATTDP 96 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH-HHHHHHHH--HHC---------TTSEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHH-HHHHHHhc--cCC---------CCCEEEEECCH
Confidence 59999999998 55678888887 668999999999877643 33222111 111 12467777887
Q ss_pred -ccccCCCEEEEecccch----------------------------------hhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 222 -ESFKDVDMVIEAIIENV----------------------------------SLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+++++||+||.+++... .+-+++..++.+++ |++++...|...+
T Consensus 97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd 175 (472)
T 1u8x_X 97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA 175 (472)
T ss_dssp HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence 77999999999997521 23456677788887 5666653333222
Q ss_pred H-HHHHHhhcCCCceeec
Q 009963 267 L-NLIGERTYSKDRIVGA 283 (521)
Q Consensus 267 i-~~ia~~~~~~~r~ig~ 283 (521)
+ +........+.|++|+
T Consensus 176 i~T~~~~k~~p~~rViG~ 193 (472)
T 1u8x_X 176 IVAEATRRLRPNSKILNI 193 (472)
T ss_dssp HHHHHHHHHSTTCCEEEC
T ss_pred HHHHHHHHhCCCCCEEEe
Confidence 2 2222222223477775
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=96.38 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=55.2
Q ss_pred eEEEEEeCChh--hHHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM--GSGIATALIL----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m--G~~iA~~la~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|+| |.+|+..++. .| +|++||++++.+++... +.+. +.. ...+++.|+|+
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~~---------l~~-----~~~~I~~TtD~ 69 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGNH---------SGN-----GRWRYEAVSTL 69 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHTT---------STT-----SCEEEEEESSH
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHHH---------Hhc-----cCCeEEEECCH
Confidence 59999999997 5899998886 57 99999999998876432 1111 110 33578888888
Q ss_pred -ccccCCCEEEEecc
Q 009963 222 -ESFKDVDMVIEAII 235 (521)
Q Consensus 222 -~~~~~aDlVIeav~ 235 (521)
+++++||+||++++
T Consensus 70 ~eAl~dADfVI~air 84 (450)
T 3fef_A 70 KKALSAADIVIISIL 84 (450)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhcCCCEEEeccc
Confidence 57899999999995
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=92.07 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=72.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||.|.||..+|..+...|++|++||+ +++.. .+. +.|. ....++ +.++
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g~-------------~~~~~l~ell~ 201 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQA-------------TFHDSLDSLLS 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHTC-------------EECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcCc-------------EEcCCHHHHHh
Confidence 6899999999999999999999999999999 77542 111 1121 122234 4468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
+||+|+.++|...+.+.-+-++..+.+++++++++.+++ +....+.+.+.
T Consensus 202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 999999999977654332324455678999988765554 34456666663
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=94.24 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=40.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+|||++|+|+||+++||||+|||+++++++|.++|++++..
T Consensus 218 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~ 259 (333)
T 3njd_A 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAM 259 (333)
T ss_dssp HHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTS
T ss_pred HHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999885
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.36 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=74.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||+.+|..|+ +|++|++++++++.++...+ .|......-......+ +.+.+...++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~--~~~~~~~~~~ 68 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADC--SADTSINSDF 68 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECC--EEESSCCSCC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeecccc--cccccccCCC
Confidence 68999999999999999999 99999999999987665321 2210000000000011 1112346789
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceee
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG 282 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig 282 (521)
|+||.||+... -.+++..+.+. ++++ |+|...++... .+.+.++. .++++
T Consensus 69 D~vilavK~~~--~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~ 119 (307)
T 3ego_A 69 DLLVVTVKQHQ--LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYV 119 (307)
T ss_dssp SEEEECCCGGG--HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEE
T ss_pred CEEEEEeCHHH--HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEE
Confidence 99999997653 34667777654 6777 77888888876 44444332 34443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.5e-07 Score=88.81 Aligned_cols=101 Identities=23% Similarity=0.270 Sum_probs=67.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh-cccc-cccCc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI-SLLT-GVLDY 221 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~-~~~~~ 221 (521)
+.+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.+ ... ..+. .+.++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~v~i~~~~~ 68 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK---------------AFAPQPVKTSYGTY 68 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTG---------------GGSSSCCEEEEECG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcc---------------ccccCCeEEEeCcH
Confidence 35799999999999999999999997 89999999987765332222210 000 1111 24568
Q ss_pred ccccCCCEEEEeccc--c------------hhhHHHHHHHHHhhCCCCceEEecC
Q 009963 222 ESFKDVDMVIEAIIE--N------------VSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 222 ~~~~~aDlVIeav~e--~------------~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+++++||+||.++.. + ..+-+++...+.+++ |++++...|
T Consensus 69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvt 122 (326)
T 3pqe_A 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVAT 122 (326)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcC
Confidence 899999999998732 1 123344555677765 466665444
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-07 Score=91.47 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=70.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++. +.+. +.|. ... ++ +.+++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g~-------------~~~-~l~ell~~ 196 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVNG-------------KFV-DLETLLKE 196 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTTC-------------EEC-CHHHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcCc-------------ccc-CHHHHHhh
Confidence 68999999999999999999999999999998765 2211 1121 111 34 34679
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhh
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT 274 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~ 274 (521)
||+|+.++|...+.+.-+-.+..+.++++++++..+++- .-..+.+.+
T Consensus 197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL 246 (307)
T 1wwk_A 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKAL 246 (307)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 999999999776544322244556789999887555442 334566655
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-08 Score=96.01 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=100.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-cC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 226 (521)
+||+|||+|.||+.+|..|+++|++|++|+++++.++.. ...|.. ...+. .++.+.+ .+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~--------~~~~~-~~~~~~~~~~ 62 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAP--------AQDIV-VKGYEDVTNT 62 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSC--------CEEEE-EEEGGGCCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCee--------cccee-cCchHhcCCC
Confidence 689999999999999999999999999999996543210 011110 01121 1223444 78
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecc-cc-----cccCCC-CeEEEEe
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAH-FF-----SPAHVM-PLLEIVR 299 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~h-f~-----~P~~~~-~lveiv~ 299 (521)
+|+||.||+... -.++++++.+.++++++|+|...++...+. ++ ..++++.- ++ .|-... ....++.
T Consensus 63 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~ 136 (294)
T 3g17_A 63 FDVIIIAVKTHQ--LDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI 136 (294)
T ss_dssp EEEEEECSCGGG--HHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEeCCccC--HHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence 999999998653 457788888888899999898888877654 32 23444321 11 221110 0011221
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhc
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR 335 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nR 335 (521)
+ +.+..+.+.+++...|....+..|..+.....
T Consensus 137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~K 169 (294)
T 3g17_A 137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYK 169 (294)
T ss_dssp E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHH
T ss_pred C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHH
Confidence 2 24566778888888887777777755544333
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=92.29 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|++||++++... +. +.|. .. .++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g~-------------~~-~~l~ell~~ 196 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KINA-------------KA-VSLEELLKN 196 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTTC-------------EE-CCHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcCc-------------ee-cCHHHHHhh
Confidence 6899999999999999999999999999999876531 11 1221 11 133 44689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.+++++++++.+++- .-..+.+.+.
T Consensus 197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 999999999766543222244556789999887555442 3346666664
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4.2e-07 Score=91.91 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=73.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||+++...+... +.| +....++ +.+++
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 220 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-----------ETG-------------AKFVEDLNEMLPK 220 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-----------HHC-------------CEECSCHHHHGGG
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-----------hCC-------------CeEcCCHHHHHhc
Confidence 6899999999999999999999999999999864333211 112 1123344 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271 (351)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence 99999999977665444445666778999988643333 34456766664
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-07 Score=89.71 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=73.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++... +.+ .+.| +....++ +.+++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 215 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ 215 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence 68999999999999999999999999999998632 211 1122 1223344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-.+..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 266 (352)
T 3gg9_A 216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266 (352)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHH
Confidence 99999999987766554445666778999998644333 33346666663
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.6e-07 Score=90.67 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=73.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++++..+. + .......++ +.+++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~ 191 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH-----------------F---------HETVAFTATADALAT 191 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTT-----------------C---------SEEEEGGGCHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHh-----------------H---------hhccccCCHHHHHhh
Confidence 68999999999999999999999999999998753221 0 001112234 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALD 242 (324)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence 99999999987766554446666778999988644333 34457777664
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-07 Score=91.18 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 215 (257)
T 1szo_A 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKP-L----------------------------------- 215 (257)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr 129 (521)
.+...+|++++.....+++++++.|.+. +++.+|-.+.
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~~ 253 (257)
T 1szo_A 216 LARRYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLGM 253 (257)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhccc
Confidence 1444678888887777777777776533 5677776654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.8e-07 Score=91.00 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++.. .+. +.|. .. .++ +.+++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g~-------------~~-~~l~ell~~ 219 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFGV-------------QQ-LPLEEIWPL 219 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcCc-------------ee-CCHHHHHhc
Confidence 689999999999999999999999999999986542 111 1221 11 133 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++..+++- .-..+.+.+.
T Consensus 220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence 999999999887654433355667789999887544432 3345666653
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8e-07 Score=88.20 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=81.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++ +. +. ....++ +.+++
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~~ 174 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALRE 174 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHhh
Confidence 6899999999999999999999999999999875 10 10 012234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcC-CCceeecccc---cccC------CCCe
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFF---SPAH------VMPL 294 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~-~~r~ig~hf~---~P~~------~~~l 294 (521)
||+|+.++|...+.+.-+-++..+.++++++++..+++- .-..+.+.+.. .-.-.|+..| .|.. ..+-
T Consensus 175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n 254 (303)
T 1qp8_A 175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254 (303)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence 999999999876654333345667789999886444432 23356665532 2223455555 2321 2345
Q ss_pred EEEEeCCC
Q 009963 295 LEIVRTNQ 302 (521)
Q Consensus 295 veiv~~~~ 302 (521)
+.++|+..
T Consensus 255 viltPH~~ 262 (303)
T 1qp8_A 255 VVATPWVA 262 (303)
T ss_dssp EEECCSCS
T ss_pred EEECCCcC
Confidence 55666643
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=85.36 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=68.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.++|..++.++. ++.|+|++++.++.-...+.+.. .-.+ ....+..+.++++++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~---~~~~---------~~~~i~~~~d~~~~~ 68 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA---AGID---------KYPKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH---GGGT---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccc---ccCC---------CCCeEecCCCHHHhC
Confidence 599999999999999999988875 89999999876543222222110 0000 112455567899999
Q ss_pred CCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 226 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+||+||.+. | .|..+-+++...+.++++ ++++...|...
T Consensus 69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-~aivlvvsNPv 121 (294)
T 2x0j_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPM 121 (294)
T ss_dssp TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSH
T ss_pred CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCcc
Confidence 999999875 2 123344555666777754 55555444433
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-07 Score=91.72 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++++..+. . .......++ +.+++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~ 194 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-----------------F---------DQVYQLPALNKMLAQ 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-----------------C---------SEEECGGGHHHHHHT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-----------------h---------hcccccCCHHHHHhh
Confidence 68999999999999999999999999999998742211 0 011112334 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-.+..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245 (324)
T ss_dssp CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHH
Confidence 99999999977655444434555678999988644333 33456777664
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-08 Score=97.50 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=76.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--------cEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCC-CCHHHHHhhhccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--------PVILKEVNEKFLEA-GIGRVRANLQSRVKKGK-MTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--------~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~ 217 (521)
.||+|||+|.||.+||..|+++|+ +|.+|.++++...+ ..+.|+. ..+..+ +.. -....++..
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~----~~~N~~YLpg---v~Lp~~i~~ 107 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINT----RHQNVKYLPG---ITLPDNLVA 107 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTT----TCCBTTTBTT---CCCCSSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHh----cCcCcccCCC---CcCCCCcEE
Confidence 599999999999999999999875 49999988653111 1111110 000000 100 012246777
Q ss_pred ccCc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 218 ~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
++|+ +.+++||+||.+||.. .-+.+++++.++++++.++++.+-++
T Consensus 108 t~dl~~al~~ad~ii~avPs~--~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 108 NPDLIDSVKDVDIIVFNIPHQ--FLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp ESCHHHHHTTCSEEEECSCGG--GHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred eCCHHHHHhcCCEEEEECChh--hhHHHHHHhccccCCCceeEEecccc
Confidence 8887 4589999999999976 45788999999999999888877665
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.6e-07 Score=91.15 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=72.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++..+.. .......++ +.+++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 193 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ 193 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence 689999999999999999999999999999987532110 000011233 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALD 244 (315)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHH
Confidence 99999999987765544435666778999988643333 34456766663
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=88.91 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=77.5
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
+||+|||+|.+ |.+++..|+.+ +.+|++||+++ ++++... .+...+.. ..+ ...++..++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~-~~~~~~~~--~~~---------~~~~i~~t~ 75 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVG-ALAKRMVE--KAG---------VPIEIHLTL 75 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHH-HHHHHHHH--HTT---------CCCEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHH-HHHHHHHh--hcC---------CCcEEEEeC
Confidence 69999999998 77888888874 56899999999 8877633 22222111 111 113566677
Q ss_pred Cc-ccccCCCEEEEecccch----------------------------------hhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 220 DY-ESFKDVDMVIEAIIENV----------------------------------SLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 220 ~~-~~~~~aDlVIeav~e~~----------------------------------~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
|+ +++++||+||.+++... .+-+++..++.+++ |++++...|..
T Consensus 76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNP 154 (450)
T 1s6y_A 76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP 154 (450)
T ss_dssp CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 86 78999999999997421 23456677788887 56666533332
Q ss_pred CcH-HHHHHhhcCCCceeec
Q 009963 265 IDL-NLIGERTYSKDRIVGA 283 (521)
Q Consensus 265 l~i-~~ia~~~~~~~r~ig~ 283 (521)
.++ +..........|++|+
T Consensus 155 vdivT~a~~k~~p~~rViG~ 174 (450)
T 1s6y_A 155 AGMVTEAVLRYTKQEKVVGL 174 (450)
T ss_dssp HHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEe
Confidence 222 2222222222377775
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=87.45 Aligned_cols=95 Identities=23% Similarity=0.304 Sum_probs=67.7
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.+||+|||+ |.+|..+|..++..|. +|+++|+++++++.-...+.+. ... ..++..++++ +
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~~ 72 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIKE 72 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHHH
Confidence 479999998 9999999999999985 8999999998765433222221 010 1245566675 6
Q ss_pred cccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCc
Q 009963 223 SFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHC 256 (521)
Q Consensus 223 ~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~ 256 (521)
++++||+||.++- .+..+.+.+...+.+++++..
T Consensus 73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 7999999999851 233456667777888875553
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-07 Score=92.16 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++++.. .+ .....++ +.+++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~~ 222 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLARD 222 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHhc
Confidence 689999999999999999999999999999987531 01 1112344 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++..+.+- .-..+.+.+.
T Consensus 223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK 273 (340)
T ss_dssp CSEEEECC----------CHHHHHHTTTTCEEEECSCC-------------
T ss_pred CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 999999999877766555567777899999887444332 2345555553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=87.07 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=72.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||+++...+.. .| .....++ +.+++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~ 227 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA 227 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence 689999999999999999999999999999986432210 11 1122344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR 278 (345)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 99999999987765544445666778999988643333 34456766664
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.1e-07 Score=88.98 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=69.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++... +. ..++ +.+++
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~ 193 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE 193 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence 6899999999999999999999999999999875321 01 1233 34688
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++..+++- .-..+.+.+.
T Consensus 194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 999999999876543322234556789999887544432 2345777665
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=85.40 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=67.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-cccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~ 222 (521)
..+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.. .....+. .+.+++
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~~i~~~~~~ 72 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL---------------PFTSPKKIYSAEYS 72 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh---------------hhcCCcEEEECcHH
Confidence 34799999999999999999999988 89999999987764332222110 0111222 244688
Q ss_pred cccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 223 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
++++||+||.+..- +..+-+++...+.+++ |++++...|
T Consensus 73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvt 125 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAA 125 (326)
T ss_dssp GGTTCSEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEECS
T ss_pred HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence 99999999998621 1223445556677766 466655444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.4e-07 Score=91.31 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=71.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++..+... +.|. ....++ +.+++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G~-------------~~~~~l~ell~~ 247 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELNL-------------TWHATREDMYPV 247 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHTC-------------EECSSHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcCc-------------eecCCHHHHHhc
Confidence 5899999999999999999999999999999864332211 1121 111233 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|++.+.+- .-..+.+.+.
T Consensus 248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 999999999776553332245667789999887544432 3345777664
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.3e-06 Score=82.36 Aligned_cols=120 Identities=16% Similarity=0.265 Sum_probs=74.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.+++..++..|+ +|.++|+++++++.....+.+.. .. .+. .-++.. .++++++
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~--~~~---------~~~v~~-~~~~a~~ 73 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PY--SPT---------TVRVKA-GEYSDCH 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GG--SSS---------CCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hh--cCC---------CeEEEe-CCHHHhC
Confidence 699999999999999999998885 89999999887664222221110 00 000 012332 4578899
Q ss_pred CCCEEEEecccc--h------------hhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh----cC-CCceeec
Q 009963 226 DVDMVIEAIIEN--V------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav~e~--~------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~----~~-~~r~ig~ 283 (521)
+||+||.+++.. + .+-+++...+.+++ |++++... |-|+..+...+ .. +.|++|+
T Consensus 74 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHhCCCHHHEEec
Confidence 999999998422 2 23445556677775 56655543 34554443322 22 3466665
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=86.04 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=71.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++... +.+. +.|. . ..++ +.+++
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g~-------------~-~~~l~ell~~ 230 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENGV-------------E-PASLEDVLTK 230 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTTC-------------E-ECCHHHHHHS
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcCe-------------e-eCCHHHHHhc
Confidence 68999999999999999998889999999998532 1110 1121 1 1234 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS 276 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~ 276 (521)
||+|+.++|-..+.+.-+-.+..+.++++++|+ |+|. +.-..+.+.+..
T Consensus 231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI-LLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp CSEEEECSCSSCC---CCCHHHHHTSCTTCEEE-ECSCGGGSCHHHHHHHHHT
T ss_pred CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE-ECcCCchhCHHHHHHHHHc
Confidence 999999999887765555466777899999986 4543 344577776643
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=89.90 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=69.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||+++... .+ ......++ +.+++
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~~------------~~~~~~sl~ell~~ 208 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------YG------------NVKPAASLDELLKT 208 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------BT------------TBEECSSHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------cc------------CcEecCCHHHHHhh
Confidence 689999999999999999999999999999874311 00 01122344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS 276 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~ 276 (521)
||+|+.++|...+.+.-+-++..+.++++++|+..+.+ +....+.+.+..
T Consensus 209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc
Confidence 99999999987765544445566778999998644333 345677777743
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-06 Score=87.98 Aligned_cols=103 Identities=15% Similarity=0.047 Sum_probs=70.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++.... . ..|. ....++ +.+++
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~g~-------------~~~~~l~ell~~ 223 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-R-----------ALGL-------------QRVSTLQDLLFH 223 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-H-----------HHTC-------------EECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-h-----------hcCC-------------eecCCHHHHHhc
Confidence 58999999999999999999999999999987643110 0 1121 112234 34688
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++|+..+++ +....+.+.+.
T Consensus 224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274 (347)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence 99999999987655433335556678999988754443 33456666663
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3e-07 Score=90.24 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=57.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 179 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 222 (279)
T 3t3w_A 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM--PP---------------------------------- 222 (279)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred HHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhC-ChHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVS-GPRAGLQKEAED 108 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~ 108 (521)
.+...+|++++.+... +++++++.|...
T Consensus 223 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 251 (279)
T 3t3w_A 223 FALRQAKRAVNQTLDVQGFYAAIQSVFDI 251 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHhhH
Confidence 1444678888776643 666666655433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-07 Score=89.94 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=72.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||+++...+... +.| +... ++ +.+++
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~ell~~ 200 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-----------RLG-------------LRQV-ACSELFAS 200 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence 6999999999999999999999999999999863322211 111 1112 34 34788
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALE 251 (330)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 99999999977665544445677788999998744433 34456666663
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=89.42 Aligned_cols=99 Identities=23% Similarity=0.232 Sum_probs=71.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||+.+|..+...|++|+.||+++... .+ ......++ +.+++
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 197 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM 197 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence 589999999999999999999999999999975320 01 01122344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC---cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l---~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++ |+|.- ....+.+.+.
T Consensus 198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALA 248 (404)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHH
T ss_pred CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEE-ECCCChHHhHHHHHHHHH
Confidence 999999999887665444355666789999886 44443 3346666664
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-05 Score=69.56 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=66.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~ 222 (521)
+++|.|+|+|.+|..+|..|.+.|++|+++|++++.++...+ .|. ..+.. .++ +.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-----------~~~----------~~~~gd~~~~~~l~ 64 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED-----------EGF----------DAVIADPTDESFYR 64 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTC----------EEEECCTTCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CCC----------cEEECCCCCHHHHH
Confidence 468999999999999999999999999999999988766431 121 00000 011 11
Q ss_pred --cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 223 --SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 223 --~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
.+.++|+||.+++. .+....+...+.+.. ...|++...+....+.+
T Consensus 65 ~~~~~~~d~vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 65 SLDLEGVSAVLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp HSCCTTCSEEEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred hCCcccCCEEEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence 25689999999984 344444444455544 55677666555444444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-06 Score=83.26 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=65.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (521)
-+||+|||+|.+|.+++..++..++ +|.++|+++++++.....+.+.. .....+.. ..++++
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~i~~~~~~a 73 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL---------------PFTSPKKIYSAEYSD 73 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH---------------HhcCCeEEEECCHHH
Confidence 3699999999999999999998886 89999999987764322221110 01112212 246788
Q ss_pred ccCCCEEEEecccc--h------------hhHHHHHHHHHhhCCCCceEEec
Q 009963 224 FKDVDMVIEAIIEN--V------------SLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 224 ~~~aDlVIeav~e~--~------------~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+++||+||.+++-. + .+-+++...+.+++ |++++...
T Consensus 74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA 124 (326)
T ss_dssp GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 99999999987432 1 33445556677776 55555443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=7.5e-06 Score=81.80 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=65.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 224 (521)
+||+|||+|.+|.+++..++..++ +|.++|+++++++.....+.+.. .....+.. ..+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~v~~~~~~a~ 70 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ---------------AFTAPKKIYSGEYSDC 70 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG---------------GGSCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH---------------HhcCCeEEEECCHHHh
Confidence 699999999999999999998887 89999999988764332221110 01112212 2467889
Q ss_pred cCCCEEEEecccch--------------hhHHHHHHHHHhhCCCCceEEec
Q 009963 225 KDVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 225 ~~aDlVIeav~e~~--------------~~k~~v~~~l~~~~~~~~il~sn 261 (521)
++||+||.+++-.. .+-+++...+.+++ |++++...
T Consensus 71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 120 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA 120 (318)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 99999999874321 33445556677775 55655443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-06 Score=84.85 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=71.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.+++..++..|+ +|+++|+++++++.....+ ..+. . .. ..-++.. +++++++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~-~---~~-~~~~i~~-~~~~a~~ 73 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGL-P---FM-GQMSLYA-GDYSDVK 73 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSC-C---CT-TCEEEC---CGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhH-H---hc-CCeEEEE-CCHHHhC
Confidence 689999999999999999999998 9999999987765321111 1110 0 00 0012332 4678899
Q ss_pred CCCEEEEecccch--------------hhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh----c-CCCceeec
Q 009963 226 DVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav~e~~--------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~----~-~~~r~ig~ 283 (521)
+||+||.+++... .+-+++.+.+.+++ |+++++.. |-|+..+...+ . .+.|++|+
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence 9999999985432 12345666777775 56655543 34554333222 2 24567665
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-05 Score=67.61 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
++|+|+|+|.||..++..|.+.|++|+++|++++.++...+. .|.. .+.. ..+ +
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----------~~~~----------~~~~d~~~~~~l~~ 64 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDAL----------VINGDCTKIKTLED 64 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSSE----------EEESCTTSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----------cCcE----------EEEcCCCCHHHHHH
Confidence 589999999999999999999999999999999876553210 1110 0000 001 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
..+.++|+||.+++.+. .. ..+..+.+.++++.+++..+
T Consensus 65 ~~~~~~d~vi~~~~~~~-~~-~~~~~~~~~~~~~~ii~~~~ 103 (140)
T 1lss_A 65 AGIEDADMYIAVTGKEE-VN-LMSSLLAKSYGINKTIARIS 103 (140)
T ss_dssp TTTTTCSEEEECCSCHH-HH-HHHHHHHHHTTCCCEEEECS
T ss_pred cCcccCCEEEEeeCCch-HH-HHHHHHHHHcCCCEEEEEec
Confidence 22678999999998653 22 23334445566677776443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.8e-06 Score=82.93 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=65.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.+++..++..+ .+|+++|+++++++.....+.+.. ... ..-++.. .++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----~~~---------~~~~v~~-~~~~a~~ 66 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----PFA---------HPVWVWA-GSYGDLE 66 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----GGS---------CCCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----hhc---------CCeEEEE-CCHHHhC
Confidence 58999999999999999999887 489999999887764222221110 000 0012333 4688899
Q ss_pred CCCEEEEecccc--------------hhhHHHHHHHHHhhCCCCceEEec
Q 009963 226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 226 ~aDlVIeav~e~--------------~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+||+||.+++-. ..+-+++...+.+++ |++++...
T Consensus 67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 115 (310)
T 2xxj_A 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVA 115 (310)
T ss_dssp TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 999999987322 234455556677775 45555433
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-06 Score=84.22 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=63.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||..++..|++. |+ +|.+||+++++++...+. .+. .+....++ +.+
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e~v 194 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQEAV 194 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHHHH
Confidence 5899999999999999999876 87 899999999987764321 010 12334455 457
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++||+||.|+|... .++.. +.+++++++.+.++
T Consensus 195 ~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g~ 227 (312)
T 2i99_A 195 AGADVIITVTLATE----PILFG--EWVKPGAHINAVGA 227 (312)
T ss_dssp TTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECCC
T ss_pred hcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCCC
Confidence 89999999998642 33322 46788888876533
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=86.09 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=71.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++.. .. .+ +....++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~------------~~-------------~~~~~~l~ell~~ 199 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE------------KK-------------GYYVDSLDDLYKQ 199 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH------------HT-------------TCBCSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH------------hh-------------CeecCCHHHHHhh
Confidence 689999999999999999999999999999987643 10 00 0112234 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.+++++++++.+++ +.-..+.+.+.
T Consensus 200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999977665432224455678999988755443 34456766664
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=88.40 Aligned_cols=100 Identities=20% Similarity=0.107 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++... +.+ .... ++ +.+++
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------------~~~-------------~~~~-~l~ell~~ 200 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF--------------EPF-------------LTYT-DFDTVLKE 200 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG--------------TTT-------------CEEC-CHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhh--------------hcc-------------cccc-CHHHHHhc
Confidence 6899999999999999999999999999999875310 001 1112 44 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-.+..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 251 (343)
T 2yq5_A 201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQ 251 (343)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 99999999977665544445566778999998644333 34456766663
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-06 Score=87.25 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=72.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||.|.||..+|..+...|++ |+.||+++...+... +.| +....++ +.++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 220 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA 220 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence 5899999999999999999999998 999999864433211 112 1112244 3468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
+||+|+.++|...+.+.-+-++..+.++++++|++.+.+ +.-..+.+.+.
T Consensus 221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 999999999987655443334556778999988654443 34456766664
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.2e-06 Score=73.35 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..++..|...|++|+++|+++++++...+.+ | ..+....++ +.+.+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~ 80 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN 80 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence 5899999999999999999999999999999998876532211 1 011122333 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+|+||.|+|....+ +. ...+.++.+++..
T Consensus 81 ~Divi~at~~~~~~----~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 81 NDVIITATSSKTPI----VE--ERSLMPGKLFIDL 109 (144)
T ss_dssp CSEEEECSCCSSCS----BC--GGGCCTTCEEEEC
T ss_pred CCEEEEeCCCCCcE----ee--HHHcCCCCEEEEc
Confidence 99999999865321 11 1345566666543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=78.38 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=63.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||.+++..|.+.|++|+++|+++++++...+. .| +....++ +.+++
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK 186 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence 589999999999999999999999999999999876543110 01 1122243 45789
Q ss_pred CCEEEEecccchh--hHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVS--LKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~--~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+|+||.|+|.... +.. .+. .+.+++++++.+..+
T Consensus 187 aDiVi~atp~~~~~~~~~-~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 187 VQVIVNTTSVGLKDEDPE-IFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CSEEEECSSTTSSTTCCC-SSC--GGGCCTTSEEEESSS
T ss_pred CCEEEEeCCCCCCCCCCC-CCC--HHHcCCCCEEEEcCC
Confidence 9999999987642 101 111 245678888877665
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-06 Score=85.98 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=68.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|++||++.+.. ..|. . ..++ +.+++
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~-------------~-~~~l~ell~~ 167 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG-------------E-FVSLERLLAE 167 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS-------------C-CCCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc-------------c-cCCHHHHHHh
Confidence 589999999999999999999999999999765421 0110 0 1234 34679
Q ss_pred CCEEEEecccchh----hHHHHHHHHHhhCCCCceEEecCCcC---cHHHHHHhhc
Q 009963 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~l---~i~~ia~~~~ 275 (521)
||+|+.++|-..+ .+.-+-+++.+.++++++++ |+|.- .-..+.+.+.
T Consensus 168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLV-NASRGAVVDNQALRRLLE 222 (380)
T ss_dssp CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEE-ECCCCcccCHHHHHHHHH
Confidence 9999999997665 43322245666789999886 44443 3356766664
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.8e-06 Score=85.48 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=71.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++++.. . +.+ .... ++ +.+++
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~~-------------~~~~-~l~ell~~ 197 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------HPD-------------FDYV-SLEDLFKQ 197 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------CTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------Hhc-------------cccC-CHHHHHhc
Confidence 689999999999999999999999999999986431 0 000 1111 34 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++..+++ +.-..+.+.+.
T Consensus 198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999988765443334556678999988644433 34456777664
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-06 Score=87.37 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=73.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.||..+|..+...|++|+.||++.+... .+ . ...++ +.+++
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~-------------~-~~~sl~ell~~ 170 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE-------------G-DFRTLDELVQE 170 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC-------------S-CBCCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC-------------c-ccCCHHHHHhh
Confidence 6899999999999999999999999999997543210 00 0 12234 34789
Q ss_pred CCEEEEecccchh----hHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc
Q 009963 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~ 286 (521)
||+|+.++|-..+ .+.-+-.+..+.++++++++ |+|. ++-..+.+.+.. .-.-.++-.|
T Consensus 171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~ 237 (381)
T 3oet_A 171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI-NACRGPVVDNAALLARLNAGQPLSVVLDVW 237 (381)
T ss_dssp CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence 9999999997655 43333345556789999886 5554 344567776643 2233444444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.2e-05 Score=62.31 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=36.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAG 186 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~ 186 (521)
.++|+|+|+|.||..++..|.+.| ++|+++|++++.++..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 478999999999999999999999 9999999999877653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.6e-05 Score=64.60 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
.+|.|+|+|.+|..+|..|...|++|+++|++++.++.+.+ .|.. .+.. .++ +
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----------~g~~----------~i~gd~~~~~~l~~ 66 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----------RGVR----------AVLGNAANEEIMQL 66 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTCE----------EEESCTTSHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------cCCC----------EEECCCCCHHHHHh
Confidence 58999999999999999999999999999999998776431 2210 0000 011 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
..+.++|+||.+++.+.... .+...+....+.-.|++-.
T Consensus 67 a~i~~ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 67 AHLECAKWLILTIPNGYEAG-EIVASARAKNPDIEIIARA 105 (140)
T ss_dssp TTGGGCSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEEE
T ss_pred cCcccCCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence 13578999999999875432 2333344443444555533
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-06 Score=84.18 Aligned_cols=99 Identities=19% Similarity=0.079 Sum_probs=69.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|++||++++.. . +.+ +.. .++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~~-------------~~~-~~l~ell~~ 198 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------EDY-------------CTQ-VSLDEVLEK 198 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------TTT-------------CEE-CCHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------Hhc-------------ccc-CCHHHHHhh
Confidence 689999999999999999999999999999986431 0 000 111 134 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-++..+.++++++++ |+|. +.-..+.+.+.
T Consensus 199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~li-n~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILV-NCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEE-ECCCcccccHHHHHHHHH
Confidence 999999999776544333245556789999886 4444 34456766664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.4e-05 Score=74.51 Aligned_cols=119 Identities=14% Similarity=0.256 Sum_probs=71.0
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|+| +|.+|..++..|+..|+ ++.++|+ ++++++.....+.+.. ..+. .-++.. .+++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~----~~~~---------~~~v~~-~~~~ 66 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AYDS---------NTRVRQ-GGYE 66 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TTTC---------CCEEEE-CCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHH----hhCC---------CcEEEe-CCHH
Confidence 4899999 99999999999998886 7999999 8876543221111110 0000 012222 3578
Q ss_pred cccCCCEEEEecc--cch------------hhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh----cC-CCceeec
Q 009963 223 SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA 283 (521)
Q Consensus 223 ~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~----~~-~~r~ig~ 283 (521)
++++||+||.+.. ... .+-+.+.+.+.+.. +++++... |-|++.+...+ .. +.|++|+
T Consensus 67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence 8999999999873 221 23445556666665 45555432 34444333222 22 4577776
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.9e-05 Score=68.46 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=60.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~ 224 (521)
.++|.|+|+|.+|..++..|...|++|+++|++++.++... +.+. . .......-...+. .+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~~~-~-----~~~~d~~~~~~l~~~~~ 68 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT-H-----AVIANATEENELLSLGI 68 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-----------TTCS-E-----EEECCTTCHHHHHTTTG
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HhCC-E-----EEEeCCCCHHHHHhcCC
Confidence 35799999999999999999999999999999988765421 1110 0 0000000000111 25
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.++|+||.+++.+.+....+...+. .+.+..+++..++
T Consensus 69 ~~~d~vi~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 69 RNFEYVIVAIGANIQASTLTTLLLK-ELDIPNIWVKAQN 106 (144)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHH-HTTCSEEEEECCS
T ss_pred CCCCEEEECCCCchHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 7899999999876443333333333 3455566654433
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.2e-05 Score=73.47 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=61.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
+|+|||+|.||.+++..|...|++|+++|+++++++...+. .|. . ..+++.++++|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~-----------~---~~~~~~~~~~D 173 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL-----------R---AVPLEKAREAR 173 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC-----------E---ECCGGGGGGCS
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc-----------c---hhhHhhccCCC
Confidence 79999999999999999999999999999999876553211 010 0 12332237899
Q ss_pred EEEEecccchh--hHHHHHHHHHhhCCCCceEEecCCc
Q 009963 229 MVIEAIIENVS--LKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 229 lVIeav~e~~~--~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+||.|+|.... +. ..+. .+.+++++++++.+.+
T Consensus 174 ivi~~tp~~~~~~~~-~~l~--~~~l~~g~~viD~~~~ 208 (263)
T 2d5c_A 174 LLVNATRVGLEDPSA-SPLP--AELFPEEGAAVDLVYR 208 (263)
T ss_dssp EEEECSSTTTTCTTC-CSSC--GGGSCSSSEEEESCCS
T ss_pred EEEEccCCCCCCCCC-CCCC--HHHcCCCCEEEEeecC
Confidence 99999997741 11 1111 3456788888765443
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.84 E-value=9.9e-05 Score=76.26 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=70.9
Q ss_pred ceEEEEEeCChh-hHHHHHHHHh--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLM-GSGIATALIL--S---NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~m-G~~iA~~la~--~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
.+||+|||+|.. +..+...|+. . +.+|+++|+++++++... .+... .... . .++..++|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~---~~~~----------~-~~v~~t~d 66 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKR---LVKD----------R-FKVLISDT 66 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHH---HHTT----------S-SEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHH---HhhC----------C-eEEEEeCC
Confidence 369999999984 2222233454 3 458999999999877522 22111 1110 1 35666778
Q ss_pred c-ccccCCCEEEEeccc--------------ch--------------------hhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 221 Y-ESFKDVDMVIEAIIE--------------NV--------------------SLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~e--------------~~--------------------~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+ +++++||+||.++-. +. .+-.++.+++.+++ ++++..-|...
T Consensus 67 ~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPv 144 (417)
T 1up7_A 67 FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPS 144 (417)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSH
T ss_pred HHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChH
Confidence 6 789999999999811 11 23456777888887 67665444333
Q ss_pred cH-HHHHHhhcCCCceeec
Q 009963 266 DL-NLIGERTYSKDRIVGA 283 (521)
Q Consensus 266 ~i-~~ia~~~~~~~r~ig~ 283 (521)
++ +..........|++|+
T Consensus 145 di~t~a~~k~~p~~rviG~ 163 (417)
T 1up7_A 145 GHITEFVRNYLEYEKFIGL 163 (417)
T ss_dssp HHHHHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHHhCCCCCEEEe
Confidence 22 2222222223377775
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.9e-05 Score=67.15 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=59.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc--Cc-c-
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL--DY-E- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~- 222 (521)
++|.|+|+|.||..+|..|.+. |++|+++|++++.++.+. +.|... ... ..++ .+ +
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-----------~~g~~~------~~g--d~~~~~~l~~~ 100 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR-----------SEGRNV------ISG--DATDPDFWERI 100 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-----------HTTCCE------EEC--CTTCHHHHHTB
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-----------HCCCCE------EEc--CCCCHHHHHhc
Confidence 5799999999999999999999 999999999998876532 122100 000 0000 01 1
Q ss_pred -cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
.+.++|+||.+++.+.. ...++..+....+...|++
T Consensus 101 ~~~~~ad~vi~~~~~~~~-~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 101 LDTGHVKLVLLAMPHHQG-NQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp CSCCCCCEEEECCSSHHH-HHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCCEEEEeCCChHH-HHHHHHHHHHHCCCCEEEE
Confidence 26789999999987543 2334444444333444544
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=69.47 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=35.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|+|+|.+|..++..|...|++|+++|++++.++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR 57 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 68999999999999999999999999999999987654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.76 E-value=7.3e-05 Score=65.08 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred ceEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
-++|+|||+ |.||..++..|.+.|++|+.+|.+.+.+ .| +....+++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i----------------~G-------------~~~~~s~~ 64 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----------------EG-------------LKCYRSVR 64 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----------------TT-------------EECBSSGG
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE----------------CC-------------eeecCCHH
Confidence 368999999 9999999999999999866555543211 01 22233444
Q ss_pred cc-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh-cCCCceee
Q 009963 223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG 282 (521)
Q Consensus 223 ~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~-~~~~r~ig 282 (521)
++ ..+|+||.++|. +.-.+++.++.+ ...+.++. .+|+.. .++.+.. .+.-+++|
T Consensus 65 el~~~vDlvii~vp~--~~v~~v~~~~~~-~g~~~i~~-~~~~~~-~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 65 ELPKDVDVIVFVVPP--KVGLQVAKEAVE-AGFKKLWF-QPGAES-EEIRRFLEKAGVEYSF 121 (138)
T ss_dssp GSCTTCCEEEECSCH--HHHHHHHHHHHH-TTCCEEEE-CTTSCC-HHHHHHHHHHTCEEEC
T ss_pred HhCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEE-cCccHH-HHHHHHHHHCCCEEEc
Confidence 43 579999999994 344566666554 34556554 455543 3444333 22334554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.2e-05 Score=75.66 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=60.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..+...|.+|+++|+++++.+... +.|. ..+. ..++ +.+++
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 215 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD 215 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence 5899999999999999999999999999999987654321 1121 0000 1233 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.++|..+- .. +..+.+++++++++.+
T Consensus 216 aDvVi~~~p~~~i-~~----~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 216 IDICINTIPSMIL-NQ----TVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSEEEECCSSCCB-CH----HHHTTSCTTCEEEECS
T ss_pred CCEEEECCChhhh-CH----HHHHhCCCCCEEEEEe
Confidence 9999999997432 12 2234577888776443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.9e-05 Score=72.76 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=60.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..+...|.+|+++|++++..+... +.|. ..+. ..++ +.+++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 213 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD 213 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence 5899999999999999999999999999999987654321 1121 0000 1223 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||.++|..+- ... ..+.+++++++++.+
T Consensus 214 aDvVi~~~p~~~i-~~~----~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 214 VDVCINTIPALVV-TAN----VLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSEEEECCSSCCB-CHH----HHHHSCTTCEEEECS
T ss_pred CCEEEECCChHHh-CHH----HHHhcCCCCEEEEec
Confidence 9999999987542 122 223577888876443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=73.53 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=63.7
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccC
Q 009963 147 VKKVAILG-GGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD 220 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 220 (521)
.+||+|+| +|.+|..++..|+..| .+|+++|++++. ..+. . + ..... ...+.. +++
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~-d-------L-~~~~~--------~~~v~~~~~t~d 69 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTA-D-------I-SHMDT--------GAVVRGFLGQQQ 69 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHH-H-------H-HTSCS--------SCEEEEEESHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHH-H-------h-hcccc--------cceEEEEeCCCC
Confidence 47999999 7999999999999999 799999998761 1110 0 0 11100 012322 345
Q ss_pred c-ccccCCCEEEEecc--cch------------hhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 221 Y-ESFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~--e~~------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
+ +++++||+||.++. ... .+-+.+.+.+.+.. ++.++... |-|++.
T Consensus 70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~--SNPv~~ 130 (326)
T 1smk_A 70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLI--SNPVNS 130 (326)
T ss_dssp HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEEC--CSSHHH
T ss_pred HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEE--CCchHH
Confidence 5 56899999999973 211 34455566677766 45554432 345544
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=9.7e-05 Score=73.55 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=61.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccCc
Q 009963 148 KKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLDY 221 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 221 (521)
+||+|||+ |.+|..++..|+..| .+|+++|+++ .+..... +.... . ..++.. ++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~d--------L~~~~-~-------~~~l~~~~~t~d~ 62 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAAD--------LSHIE-T-------RATVKGYLGPEQL 62 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHH--------HTTSS-S-------SCEEEEEESGGGH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHH--------HhccC-c-------CceEEEecCCCCH
Confidence 48999998 999999999999988 6899999997 1111001 11111 0 113443 3567
Q ss_pred c-cccCCCEEEEec--ccch------------hhHHHHHHHHHhhCCCCceEE
Q 009963 222 E-SFKDVDMVIEAI--IENV------------SLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 222 ~-~~~~aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~~il~ 259 (521)
+ ++++||+||.++ |... .+-+++.+.+.+++ |+++++
T Consensus 63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi 114 (314)
T 1mld_A 63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMIC 114 (314)
T ss_dssp HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEE
T ss_pred HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence 5 599999999987 2221 34556667777777 455444
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=72.87 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=65.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVN----EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
+||+|+|+ |.+|..++..|+..|+ +|.++|++ +++++.-...+ ..+.. .....+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl--------~~~~~------~~~~~i 71 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI--------DDCAF------PLLAGM 71 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH--------HTTTC------TTEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHH--------hhhcc------cccCcE
Confidence 69999998 9999999999999886 89999999 55443211111 11111 012345
Q ss_pred ccccC-cccccCCCEEEEecc--c------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 216 TGVLD-YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 216 ~~~~~-~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
..+++ .+++++||+||.+.. . +..+-+.+.+.+.+++.++++++..|
T Consensus 72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S 133 (329)
T 1b8p_A 72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG 133 (329)
T ss_dssp EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 55555 467999999998762 1 11234556667777764666554333
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00029 Score=66.01 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=59.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (521)
+||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+.. ...+-.|-.+.. ..+ ..+.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~------------~~l~~a~i~ 64 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHK------------EILRDAEVS 64 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSH------------HHHHHHTCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCH------------HHHHhcCcc
Confidence 4799999999999999999999999999999999876532110 000000111100 001 2368
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhh-CCCCceEE
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~ 259 (521)
+||+||.+++.+.. ..+...+.+. .+...+++
T Consensus 65 ~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 65 KNDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp TTCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred cCCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence 99999999987642 2333444433 45555554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7.5e-06 Score=81.50 Aligned_cols=51 Identities=10% Similarity=-0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHH
Q 009963 465 RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELA 517 (521)
Q Consensus 465 ~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~ 517 (521)
-=|.||++.++.|||++++++|+++++||| ..|..|+|+| ||||+++|..|
T Consensus 192 GFi~NRl~~~~~~EA~~lv~eGvas~edID--~~~~~g~g~~~a~mGPf~~~Dl~G 245 (319)
T 3ado_A 192 GFVLNRLQYAIISEAWRLVEEGIVSPSDLD--LVMSDGLGMRYAFIGPLETMHLNA 245 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHH--HHHHTTHHHHHTTSCHHHHHHHTT
T ss_pred CEeHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCCcchhhhhhhcC
Confidence 348899999999999999999999999999 8888889977 89999999877
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.2e-05 Score=77.54 Aligned_cols=91 Identities=9% Similarity=0.032 Sum_probs=60.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+|+|||+|.||.+++..|++.|. +|+++||++++++...+ . + ... ...+. +.+++
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~-----------~--~---------~~~-~~~~~~~~~~~ 166 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF-----------P--V---------KIF-SLDQLDEVVKK 166 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS-----------S--C---------EEE-EGGGHHHHHHT
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-----------H--c---------ccC-CHHHHHhhhcC
Confidence 79999999999999999999998 99999999987654210 0 0 001 11222 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+|+||.|+|..+.-....+. ...++++.++.+....
T Consensus 167 aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 167 AKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred CCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 99999999753210000110 1234678888777666
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=6.3e-05 Score=78.65 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=65.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||.++|..+...|.+|+++|+++.....+. ..|. .. .++ +.+++
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g~-------------~~-~~l~ell~~ 312 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEGF-------------NV-VTLDEIVDK 312 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTTC-------------EE-CCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcCC-------------Ee-cCHHHHHhc
Confidence 5899999999999999999999999999999987643321 1121 11 234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~ 272 (521)
||+||.+.. ...+ +-.+..+.++++++|+..+++ +....+.+
T Consensus 313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 999999962 2221 112344568999998754443 34455655
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.59 E-value=8.8e-05 Score=65.14 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=63.8
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
++|+|||+ |.||..++..|.+.|++|+.+|.+. +.+ .| +....++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i----------------~G-------------~~~~~sl 64 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL----------------LG-------------QQGYATL 64 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE----------------TT-------------EECCSST
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc----------------CC-------------eeccCCH
Confidence 47999999 8999999999999999966666554 211 01 1223344
Q ss_pred ccc-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh-cCCCceee
Q 009963 222 ESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG 282 (521)
Q Consensus 222 ~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~-~~~~r~ig 282 (521)
+++ ..+|+||.++|.. .-.+++.++.+ .....++.. +|+. -.++.+.+ .+.-+++|
T Consensus 65 ~el~~~~Dlvii~vp~~--~v~~v~~~~~~-~g~~~i~i~-~~~~-~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 65 ADVPEKVDMVDVFRNSE--AAWGVAQEAIA-IGAKTLWLQ-LGVI-NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp TTCSSCCSEEECCSCST--HHHHHHHHHHH-HTCCEEECC-TTCC-CHHHHHHHHTTTCEEEC
T ss_pred HHcCCCCCEEEEEeCHH--HHHHHHHHHHH-cCCCEEEEc-CChH-HHHHHHHHHHcCCEEEc
Confidence 443 5789999999953 34566666555 344556653 5555 34454443 33445665
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=74.95 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEEEEeCChhhHH--HHHHHHh----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSG--IATALIL----S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~--iA~~la~----~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
+||+|||+|..|.. +...++. . +.+|+++|+++++++.....+++.... .| ..-++..|+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~---~~---------~~~~i~~t~ 68 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE---LN---------SPVKVVKTE 68 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH---HT---------CCCEEEEES
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---cC---------CCeEEEEeC
Confidence 48999999998754 2222332 2 347999999999887543322222211 11 112567778
Q ss_pred Cc-ccccCCCEEEEec
Q 009963 220 DY-ESFKDVDMVIEAI 234 (521)
Q Consensus 220 ~~-~~~~~aDlVIeav 234 (521)
|+ +++++||+||.++
T Consensus 69 d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 69 SLDEAIEGADFIINTA 84 (477)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEECc
Confidence 87 5689999999986
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00016 Score=71.71 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=60.6
Q ss_pred eEEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccC
Q 009963 148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD 220 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 220 (521)
+||+||| +|.+|.+++..|+.. + .++.++|+++ .++ +.. ++ ..... ....+.. +.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~-G~a-----~D--l~~~~--------~~~~v~~~~~~~~ 63 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP-GVA-----VD--LSHIP--------TAVKIKGFSGEDA 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH-HHH-----HH--HHTSC--------SSEEEEEECSSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch-hHH-----HH--hhCCC--------CCceEEEecCCCc
Confidence 5899999 899999999999875 5 4899999987 332 210 00 01110 0112332 346
Q ss_pred cccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
++++++||+||.+... +..+-+++.+.+.+++ |++++...|
T Consensus 64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvt 118 (312)
T 3hhp_A 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIIT 118 (312)
T ss_dssp HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEec
Confidence 7899999999998621 1223344555677776 455554444
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=2.3e-05 Score=76.89 Aligned_cols=51 Identities=6% Similarity=-0.190 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
-|.+|++.++++||+++++++++++++|| ..+..++|||+|||+++|.+|=
T Consensus 191 ~i~nr~~~~~~~ea~~l~~~g~~~~~~id--~~~~~~~g~~~Gp~~~~D~~Gl 241 (283)
T 4e12_A 191 YVLNSLLVPLLDAAAELLVDGIADPETID--KTWRIGTGAPKGPFEIFDIVGL 241 (283)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCHHHHH--HHHHHHHCCSSCHHHHHHHHCH
T ss_pred EEehHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhccCCCcCHHHHHHhccH
Confidence 48899999999999999999999999999 8888899999999999999884
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=74.72 Aligned_cols=87 Identities=26% Similarity=0.259 Sum_probs=62.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|+.+...|.+|+++|++++.++.+. +.|. + ..++ +.+++
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-----------~~Ga-~-------------~~~l~e~l~~ 329 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-----------MEGF-D-------------VVTVEEAIGD 329 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-E-------------ECCHHHHGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-E-------------EecHHHHHhC
Confidence 5899999999999999999999999999999998776542 1231 0 0122 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+|+||+|++...-+.. +..+.++++++++..++
T Consensus 330 aDvVi~atgt~~~i~~----~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 330 ADIVVTATGNKDIIML----EHIKAMKDHAILGNIGH 362 (494)
T ss_dssp CSEEEECSSSSCSBCH----HHHHHSCTTCEEEECSS
T ss_pred CCEEEECCCCHHHHHH----HHHHhcCCCcEEEEeCC
Confidence 9999999875543322 33445788888864443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=77.35 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=61.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||.++|..+...|.+|+++|+++.....+. ..|. .. .++ +.+++
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G~-------------~~-~~l~ell~~ 332 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEGY-------------RV-VTMEYAADK 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTTC-------------EE-CCHHHHTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcCC-------------Ee-CCHHHHHhc
Confidence 5899999999999999999999999999999987642211 1121 11 234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.++....-+. .+..+.++++++|+..+++
T Consensus 333 aDiVi~~~~t~~lI~----~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 333 ADIFVTATGNYHVIN----HDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CSEEEECSSSSCSBC----HHHHHHCCTTEEEEECSSS
T ss_pred CCEEEECCCcccccC----HHHHhhCCCCcEEEEcCCC
Confidence 999999983221122 3444568999998754443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.48 E-value=7.5e-05 Score=71.14 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=52.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (521)
+||+|||+|.||..++..+.+.|++| .++|+++ ..+. ...++++ +
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------------------------------~~~~~~~l~~ 48 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------------------------------MVRGIDEFLQ 48 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------------------------------EESSHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------------------------------hcCCHHHHhc
Confidence 38999999999999999999899997 7999884 2110 1234433 3
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
.++|+||+|+|.+.. ...+ ...+..+..+.+.+
T Consensus 49 ~~~DvVv~~~~~~~~-~~~~----~~~l~~G~~vv~~~ 81 (236)
T 2dc1_A 49 REMDVAVEAASQQAV-KDYA----EKILKAGIDLIVLS 81 (236)
T ss_dssp SCCSEEEECSCHHHH-HHHH----HHHHHTTCEEEESC
T ss_pred CCCCEEEECCCHHHH-HHHH----HHHHHCCCcEEEEC
Confidence 589999999996632 2222 23344555555443
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00088 Score=66.57 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=60.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-- 220 (521)
+||+|+|+ |.+|..++..++..|+ ++.++|+ ++++++.....+.+.. ...|. ...+..+++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~---~~~~~---------~~~i~~~~d~l 68 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTRS---------DANIYVESDEN 68 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSCC---------CCEEEEEETTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH---HhcCC---------CeEEEeCCcch
Confidence 48999999 9999999999998885 6999999 7765443222221110 00000 012333333
Q ss_pred cccccCCCEEEEec--ccc------------hhhHHHHHHHHHhhCCCCceEEe
Q 009963 221 YESFKDVDMVIEAI--IEN------------VSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 221 ~~~~~~aDlVIeav--~e~------------~~~k~~v~~~l~~~~~~~~il~s 260 (521)
++++++||+||.+. |.. ..+-+.+.+.+.+.+ ++++..
T Consensus 69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv 120 (313)
T 1hye_A 69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV 120 (313)
T ss_dssp GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE
Confidence 67899999999886 221 123345556677776 555543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=4.1e-05 Score=75.81 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 465 RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 465 ~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
..+.+|++.+++|||+++++++..++++|| .++..+.|||+|||+++|.+|-
T Consensus 204 g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id--~~~~~g~g~p~GP~~~~D~~Gl 255 (302)
T 1f0y_A 204 GFIVNRLLVPYLMEAIRLYERGDASKEDID--TAMKLGAGYPMGPFELLDYVGL 255 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHH--HHHHHHHCCSSCHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCCCHHHHHHHHHH
Confidence 368899999999999999999999999999 8887889999999999999874
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=73.53 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=60.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.+++
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G~-------------~-~~sL~eal~~ 266 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEGY-------------Q-VLLVEDVVEE 266 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhCC-------------e-ecCHHHHHhh
Confidence 5899999999999999999999999999999987654321 1221 1 1234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
||+||.+.....-+. .+..+.+++++||+ |++
T Consensus 267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVI-Nvg 298 (436)
T 3h9u_A 267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVC-NIG 298 (436)
T ss_dssp CSEEEECSSCSCSBC----TTTGGGCCTTEEEE-ECS
T ss_pred CCEEEECCCCcCccC----HHHHhhcCCCcEEE-EeC
Confidence 999998654322121 13345678999886 444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00048 Score=65.74 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=57.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++||+|+|+|.||..++..+...+.+++. +|++.+. .. .+..+++++.+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~-------------gv~v~~dl~~l~ 53 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TT-------------PYQQYQHIADVK 53 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------C-------------CSCBCSCTTTCT
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cC-------------CCceeCCHHHHh
Confidence 57999999999999999999888766554 7887651 01 123345665544
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
++|+||+....+ .+...+. +..+.-+++.|++++.+++
T Consensus 54 ~~DVvIDft~p~-----a~~~~~~--l~~g~~vVigTTG~s~e~~ 91 (243)
T 3qy9_A 54 GADVAIDFSNPN-----LLFPLLD--EDFHLPLVVATTGEKEKLL 91 (243)
T ss_dssp TCSEEEECSCHH-----HHHHHHT--SCCCCCEEECCCSSHHHHH
T ss_pred CCCEEEEeCChH-----HHHHHHH--HhcCCceEeCCCCCCHHHH
Confidence 999999876432 2333333 5566656666777765433
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=66.28 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=62.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+ +.| ....+++++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------~~g-------------~~~~~~~~~~ 60 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------ANG-------------AEAVASPDEV 60 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------TTT-------------CEEESSHHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------HcC-------------CceeCCHHHH
Confidence 46899999999999999999886 67766 89999988665321 011 223455544
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
++ ++|+|+.|+|..... ++.....+. ...+++....+.++++
T Consensus 61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~ 104 (344)
T 3euw_A 61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEM 104 (344)
T ss_dssp TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHH
Confidence 44 799999999987653 222222221 2235655555566554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.7e-05 Score=74.13 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=72.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+....... +.+ +. ..++ +.+++
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~~ 194 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLKE 194 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHHH
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHhh
Confidence 68999999999999999999999999999987542111 111 11 1234 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+|- +.-+++.+++.
T Consensus 195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence 999999999877654444345556789999886 7763 45567777774
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00046 Score=69.67 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=60.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||..++..+.. ...+|.+||++++++++..+.+.. ..|. .+....++ +.+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~eav 192 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEAV 192 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHHHH
Confidence 589999999999999988753 346899999999988765432110 0010 12233444 457
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++||+||.|+|.... ..++. .+.+++++.+...+|
T Consensus 193 ~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs 227 (350)
T 1x7d_A 193 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGG 227 (350)
T ss_dssp TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSC
T ss_pred hcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCC
Confidence 899999999986520 01111 135667776655443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00035 Score=71.34 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=61.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+++.+...|.+|+++|+++++++.+.+. .|.-. ........++ +.+.+
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~----------~g~~~-------~~~~~~~~~l~~~l~~ 231 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE----------FCGRI-------HTRYSSAYELEGAVKR 231 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTSS-------EEEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh----------cCCee-------EeccCCHHHHHHHHcC
Confidence 689999999999999999999999999999999887654321 12100 0000000112 23568
Q ss_pred CCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||+|++.... ...-+.++..+.++++.+|+..+
T Consensus 232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 9999998843321 11112334445678888776443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=70.15 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=51.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-K 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 225 (521)
++|.|+|+|.||.+++..|++.|+ +|++++|++++++...+.+. ..+ .+.. .+++++ .
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~-~~~~~l~~ 186 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKA-QAFEQLKQ 186 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCCS
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeE-eeHHHhcC
Confidence 589999999999999999999997 99999999988766433211 001 1111 122332 6
Q ss_pred CCCEEEEecccch
Q 009963 226 DVDMVIEAIIENV 238 (521)
Q Consensus 226 ~aDlVIeav~e~~ 238 (521)
++|+||.|+|..+
T Consensus 187 ~aDiIInaTp~gm 199 (281)
T 3o8q_A 187 SYDVIINSTSASL 199 (281)
T ss_dssp CEEEEEECSCCCC
T ss_pred CCCEEEEcCcCCC
Confidence 8999999998765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00024 Score=72.09 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=63.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHH-----HHHHHcC---CCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL-----QSRVKKG---KMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~-----~~~~~~g---~~~~~~~~~~~~~i~~~~ 219 (521)
.||+|||+|.||..+++.+...|.+|+++|+++++++.+.+. -..+ +..-..+ .++.+.... ...
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~------~~~ 257 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQ------QQQ 257 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHH------HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhh------hHH
Confidence 689999999999999999999999999999999887765320 0000 0000000 001110000 011
Q ss_pred Cc-ccccCCCEEEEec--ccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 220 DY-ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 220 ~~-~~~~~aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
++ +.++++|+||.++ |....- .-+-++..+.++++++|++.+
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence 22 4578999999986 432110 011234555678999887654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00018 Score=73.51 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=36.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.||+|||+|.||..++..+...|.+|+++|++++.++.+.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 230 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA 230 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 5899999999999999999999999999999998876643
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00029 Score=68.30 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=50.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.||.+++..|++.|.+|++++|++++++... + .| +. ..+++++.++
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~----------~~-------------~~-~~~~~~l~~~ 173 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-R----------LG-------------CD-CFMEPPKSAF 173 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-H----------HT-------------CE-EESSCCSSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H----------CC-------------Ce-EecHHHhccC
Confidence 5899999999999999999999999999999998766532 1 11 01 1134445589
Q ss_pred CEEEEecccch
Q 009963 228 DMVIEAIIENV 238 (521)
Q Consensus 228 DlVIeav~e~~ 238 (521)
|+||.|+|..+
T Consensus 174 DiVInaTp~Gm 184 (269)
T 3phh_A 174 DLIINATSASL 184 (269)
T ss_dssp SEEEECCTTCC
T ss_pred CEEEEcccCCC
Confidence 99999998653
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=66.25 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=49.7
Q ss_pred eEEEEEeCChhhH-HHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGS-GIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~-~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
.||+|||+|.||. .++..+.+. +++|+++|+++++++...+. .|. . ...+++.+.+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g~-~----------~~~~~~~~~l~ 61 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV-S----------ATCTDYRDVLQ 61 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC-C----------CCCSSTTGGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cCC-C----------ccccCHHHHhh
Confidence 5899999999998 488888764 77888999999887653211 121 0 0022333455
Q ss_pred cCCCEEEEecccchh
Q 009963 225 KDVDMVIEAIIENVS 239 (521)
Q Consensus 225 ~~aDlVIeav~e~~~ 239 (521)
.++|+|+.|+|....
T Consensus 62 ~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 62 YGVDAVMIHAATDVH 76 (323)
T ss_dssp GCCSEEEECSCGGGH
T ss_pred cCCCEEEEECCchhH
Confidence 689999999997653
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=65.01 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=61.6
Q ss_pred ceEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+. .| +...+++++
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~-------------~~~~~~~~~ 62 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YR-------------IMPFDSIES 62 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HT-------------CCBCSCHHH
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHH
Confidence 468999999999997 8887776 467776 899999987664321 11 111345533
Q ss_pred -ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
++++|+|+.|+|..... ++.....+. ...+++.-..+.+.++.
T Consensus 63 ll~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~ 106 (308)
T 3uuw_A 63 LAKKCDCIFLHSSTETHY--EIIKILLNL--GVHVYVDKPLASTVSQG 106 (308)
T ss_dssp HHTTCSEEEECCCGGGHH--HHHHHHHHT--TCEEEECSSSSSSHHHH
T ss_pred HHhcCCEEEEeCCcHhHH--HHHHHHHHC--CCcEEEcCCCCCCHHHH
Confidence 56899999999987653 333332221 12255554555665543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00033 Score=69.16 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
++|.|||+|.||.+++..|+..|+ +|+++||++++++..
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l 181 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL 181 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999998 999999999887654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00066 Score=67.74 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=50.7
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||..++..+.. ...+|.+||++++++++..+.+.. .+ + .+. ..++ +.+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v 186 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS 186 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence 589999999999999998876 346899999999988775433211 11 1 122 3344 457
Q ss_pred cCCCEEEEecccc
Q 009963 225 KDVDMVIEAIIEN 237 (521)
Q Consensus 225 ~~aDlVIeav~e~ 237 (521)
++|+||.|+|..
T Consensus 187 -~aDvVi~aTp~~ 198 (322)
T 1omo_A 187 -RCDVLVTTTPSR 198 (322)
T ss_dssp -SSSEEEECCCCS
T ss_pred -CCCEEEEeeCCC
Confidence 899999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00074 Score=68.74 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=59.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|+|.+|..+++.+...|.+|+++|+++++++.+.+. .|.- .........++ +.+.+
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~----------~g~~-------~~~~~~~~~~l~~~~~~ 229 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV----------FGGR-------VITLTATEANIKKSVQH 229 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS-------EEEEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCce-------EEEecCCHHHHHHHHhC
Confidence 689999999999999999999999999999999877654311 1110 00000000111 23568
Q ss_pred CCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||+|++.... ...-+.++..+.++++.+++..+
T Consensus 230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 9999999974421 11112334445567777665443
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.002 Score=64.96 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=52.9
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .| +...++++
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~ 68 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT 68 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence 357999999999999999999887 67755 899999887654321 11 23345665
Q ss_pred c-cc--CCCEEEEecccchh
Q 009963 223 S-FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 223 ~-~~--~aDlVIeav~e~~~ 239 (521)
+ ++ ++|+|+.|+|....
T Consensus 69 ~ll~~~~~D~V~i~tp~~~h 88 (354)
T 3q2i_A 69 DMLAQTDADIVILTTPSGLH 88 (354)
T ss_dssp HHHHHCCCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEECCCcHHH
Confidence 4 33 79999999998764
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00053 Score=68.10 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||..++..+... ..+|.+||++ +.++..+++.+. .|. .+... ++ +.+
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~------~g~-----------~~~~~-~~~eav 181 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRR------CGV-----------PARMA-APADIA 181 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHH------HTS-----------CEEEC-CHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHh------cCC-----------eEEEe-CHHHHH
Confidence 5899999999999999988763 3589999999 433332222111 021 12223 44 457
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.+||+||.|+|.... ++. .+.+++++++.+..|.
T Consensus 182 ~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 182 AQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGSS 215 (313)
T ss_dssp HHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCCS
T ss_pred hhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCCC
Confidence 899999999986532 222 2457788887766554
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=66.86 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
-||+|+|+ |.+|.+++..++...+ ++.|+|+++.. ++...-.+ +.... .....+..
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL--------~~~~~------~~~~~~~~ 90 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAEL--------EDCAF------PLLDKVVV 90 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HHTTC------TTEEEEEE
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhh--------hhcCc------cCCCcEEE
Confidence 59999997 9999999999988653 79999998642 22111111 11100 01123333
Q ss_pred cc-CcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 218 VL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 218 ~~-~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++ +++++++||+||.+. |- |..+-+.+...+.+++++++++...|.
T Consensus 91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 33 357799999999865 22 223444555667788888886544443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00054 Score=66.64 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc--c
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--K 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~ 225 (521)
++|.|+|+|.||.+++..|++.|.+|++++|+.++++...+.+. ..+ .+. ..+++++ .
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~-------~~~------------~~~-~~~~~~~~~~ 179 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQ-AVSMDSIPLQ 179 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEE-EEEGGGCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcc-------ccC------------CeE-EeeHHHhccC
Confidence 58999999999999999999999999999999988765432210 001 111 1123344 3
Q ss_pred CCCEEEEecccch
Q 009963 226 DVDMVIEAIIENV 238 (521)
Q Consensus 226 ~aDlVIeav~e~~ 238 (521)
++|+||.|+|...
T Consensus 180 ~~DivIn~t~~~~ 192 (272)
T 1p77_A 180 TYDLVINATSAGL 192 (272)
T ss_dssp CCSEEEECCCC--
T ss_pred CCCEEEECCCCCC
Confidence 8999999998654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00072 Score=67.71 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=61.9
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCC--c-----EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNY--P-----VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~--~-----V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
+||+|+| +|.+|+.++..|+..|+ + +.++|+++ +.++.-...+. .... .....+..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~--------~~~~------~~~~~~~~ 69 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQ--------DCAL------PLLKDVIA 69 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH--------HTCC------TTEEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhH--------hhhh------cccCCEEE
Confidence 6999999 79999999999998887 6 99999975 23322111111 1100 01123333
Q ss_pred cc-CcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 218 VL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 218 ~~-~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
++ +++++++||+||.+. |. +..+-+.+...+.++.+++.++.
T Consensus 70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vi 126 (333)
T 5mdh_A 70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI 126 (333)
T ss_dssp ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 33 367899999999875 21 22344556667788877665343
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00093 Score=68.71 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. .. .++ +.++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G~-------------~v-v~LeElL~~ 302 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDGF-------------EV-VTLDDAAST 302 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcCc-------------ee-ccHHHHHhh
Confidence 6899999999999999999999999999999987543321 1121 11 123 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
||+||.+.....-+. .+..+.++++++|+ |++..
T Consensus 303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg 336 (464)
T 3n58_A 303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF 336 (464)
T ss_dssp CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence 999999864322222 23345688999886 66543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=65.87 Aligned_cols=95 Identities=8% Similarity=0.014 Sum_probs=59.6
Q ss_pred ceEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. ++..+.+ .|++|+ ++|+++++++...+. .| +...+++++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~ 61 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR-------------IPYADSLSS 61 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT-------------CCBCSSHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCccCcHHH
Confidence 368999999999997 8888776 477766 999998876543211 11 112344444
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHH
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL 269 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ 269 (521)
+ .++|+|+.|+|..... ++... .+..+. +++-...+.+.++
T Consensus 62 l~~~~D~V~i~tp~~~h~--~~~~~---al~~G~~v~~eKP~~~~~~~ 104 (319)
T 1tlt_A 62 LAASCDAVFVHSSTASHF--DVVST---LLNAGVHVCVDKPLAENLRD 104 (319)
T ss_dssp HHTTCSEEEECSCTTHHH--HHHHH---HHHTTCEEEEESSSCSSHHH
T ss_pred hhcCCCEEEEeCCchhHH--HHHHH---HHHcCCeEEEeCCCCCCHHH
Confidence 4 6799999999977542 22222 222343 5554444555554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=67.86 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|+|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.+++
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G~-------------~-v~~Leeal~~ 275 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDGF-------------R-LVKLNEVIRQ 275 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcCC-------------E-eccHHHHHhc
Confidence 5899999999999999999999999999999987544321 1121 1 1233 45789
Q ss_pred CCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+|+||.| +.... +.. +..+.++++++++ |++.
T Consensus 276 ADIVi~a-tgt~~lI~~----e~l~~MK~gailI-Nvgr 308 (435)
T 3gvp_A 276 VDIVITC-TGNKNVVTR----EHLDRMKNSCIVC-NMGH 308 (435)
T ss_dssp CSEEEEC-SSCSCSBCH----HHHHHSCTTEEEE-ECSS
T ss_pred CCEEEEC-CCCcccCCH----HHHHhcCCCcEEE-EecC
Confidence 9999997 44332 222 3344678898886 4443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0034 Score=55.07 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=33.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~ 185 (521)
++|.|+|+|.+|..++..|...|++|+++|++ ++.++.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~ 42 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ 42 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence 47999999999999999999999999999998 555443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0025 Score=63.65 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=62.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+. .| +. .+++++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~-------------~~-~~~~~~~ 58 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------YG-------------CE-VRTIDAI 58 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-------------CE-ECCHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------hC-------------CC-cCCHHHH
Confidence 36999999999999999999875 77776 799999886653211 11 12 344443
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
++ ++|+|+.|+|..... ++.....+. ...+++-...+.+.++.
T Consensus 59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~ 103 (331)
T 4hkt_A 59 EAAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAERV 103 (331)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred hcCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHHH
Confidence 44 799999999987653 232222221 22355555555665543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0016 Score=65.38 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=50.3
Q ss_pred cceEEEEEeCChhhHHHHHHHH-h-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALI-L-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la-~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+..||+|||+|.||..++..+. + .|++ |.++|+++++++...+ +.|. ....++++
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~------------~~~~~~~~ 64 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV------------ETTYTNYK 64 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC------------SEEESCHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC------------CcccCCHH
Confidence 3579999999999999999987 4 4777 4688999987664321 1121 01234554
Q ss_pred c-cc--CCCEEEEecccchh
Q 009963 223 S-FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 223 ~-~~--~aDlVIeav~e~~~ 239 (521)
+ ++ ++|+||.|+|....
T Consensus 65 ~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 65 DMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp HHHTTSCCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEEeCChHhH
Confidence 3 43 69999999997754
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0011 Score=64.51 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+|.||.+++..|++.|.+|+++|+++++++..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l 158 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL 158 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 589999999999999999999999999999999877654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.003 Score=63.69 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=62.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||..++..+.+. +++|+ ++|++++.++...+. .| +...+++++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~~ 61 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YN-------------CAGDATMEAL 61 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HT-------------CCCCSSHHHH
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHHH
Confidence 36899999999999999998876 77854 889999887654321 11 112345543
Q ss_pred c--cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
+ .++|+|+.|+|..... ++.....+ ....+++-...+.+.++.
T Consensus 62 l~~~~~D~V~i~tp~~~h~--~~~~~al~--~gk~vl~EKP~~~~~~~~ 106 (354)
T 3db2_A 62 LAREDVEMVIITVPNDKHA--EVIEQCAR--SGKHIYVEKPISVSLDHA 106 (354)
T ss_dssp HHCSSCCEEEECSCTTSHH--HHHHHHHH--TTCEEEEESSSCSSHHHH
T ss_pred hcCCCCCEEEEeCChHHHH--HHHHHHHH--cCCEEEEccCCCCCHHHH
Confidence 4 5799999999987653 22222222 122366655555665543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00012 Score=71.91 Aligned_cols=50 Identities=12% Similarity=-0.170 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcch---hHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLS---HVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~ 518 (521)
-|.+|++.++++||+.++++|+ ++++|| ..+..++|+|+ |||+++|.+|=
T Consensus 174 fi~Nrll~~~~~EA~~l~~~Gv-~~e~id--~~~~~g~g~~~~~~GP~~l~D~~Gl 226 (293)
T 1zej_A 174 SLVNRFNAAVLSEASRMIEEGV-RAEDVD--RVWKHHLGLLYTLFGPLGNLDYIGL 226 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTC-CHHHHH--HHHHTTHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC-CHHHHH--HHHHhcCCCCCCCCCHHHHHHHhch
Confidence 6899999999999999999999 999999 88778999999 99999999884
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=64.96 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=58.5
Q ss_pred EEEEEeCChhhHHH-HHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009963 149 KVAILGGGLMGSGI-ATALILSNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 149 kI~VIG~G~mG~~i-A~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
||+|||+|.||..+ +..+.+.|++|+ ++|+++++++...+ +.|. ....+++++ ++
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~------------~~~~~~~~~~l~ 59 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGI------------GKSVTSVEELVG 59 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTC------------SCCBSCHHHHHT
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCC------------CcccCCHHHHhc
Confidence 79999999999998 777777788765 88999987654321 1121 012345544 33
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHH
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL 269 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ 269 (521)
++|+|+.|+|..... ++.... +..+. +++-...+.+..+
T Consensus 60 ~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~v~~ekP~~~~~~~ 101 (332)
T 2glx_A 60 DPDVDAVYVSTTNELHR--EQTLAA---IRAGKHVLCEKPLAMTLED 101 (332)
T ss_dssp CTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEECSSSCSSHHH
T ss_pred CCCCCEEEEeCChhHhH--HHHHHH---HHCCCeEEEeCCCcCCHHH
Confidence 599999999977542 222222 23344 4543334555554
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0017 Score=66.27 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=106.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|||.|..|.+=|..|..+|++|++--+.....+.. +.+++..+.|. ...+-.++++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~Gf-------------~v~~~~eA~~~A 99 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENGF-------------KVGTYEELIPQA 99 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTTC-------------EEEEHHHHGGGC
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCCC-------------EecCHHHHHHhC
Confidence 799999999999999999999999998876643211110 11122223332 222223678999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCC--ceeecccccccC----------CCCeE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMPLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~--r~ig~hf~~P~~----------~~~lv 295 (521)
|+|+..+|+. ....++++|.+.++++..|.- +.+..|.. .....|. .++-+-|-.|-+ ..|.+
T Consensus 100 DvV~~L~PD~--~q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l 174 (491)
T 3ulk_A 100 DLVINLTPDK--QHSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL 174 (491)
T ss_dssp SEEEECSCGG--GHHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred CEEEEeCChh--hHHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence 9999999976 456889999999999998863 44554432 1122222 233333323321 12333
Q ss_pred EEE-eCCCCcHHHHHHHHHHHHhcCCe---EEEec---C-cccchhhc-hHH----HHHHHHH-HHHHcCCCHH
Q 009963 296 EIV-RTNQTSPQVIVDLLDIGKKIKKT---PIVVG---N-CTGFAVNR-MFF----PYTQAAF-LLVERGTDLY 355 (521)
Q Consensus 296 eiv-~~~~t~~e~~~~~~~l~~~lGk~---~vvv~---d-~~Gfi~nR-il~----~~~~ea~-~l~~~G~~~~ 355 (521)
.-| +....+-...+.+..+...+|.+ ++... + ....+..| +|+ .++..++ .|++.|.+|+
T Consensus 175 iAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~ 248 (491)
T 3ulk_A 175 IAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPA 248 (491)
T ss_dssp EEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHH
T ss_pred EEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 333 22233445567778888888753 22222 1 12233333 233 3333334 4678898875
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=64.05 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=49.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|-||.+++..|...|. +|++++|+.++++...+.+ +. ....+.. +.+
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~ 175 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ 175 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence 579999999999999999999997 8999999998776533211 10 0111222 468
Q ss_pred CCEEEEecccch
Q 009963 227 VDMVIEAIIENV 238 (521)
Q Consensus 227 aDlVIeav~e~~ 238 (521)
+|+||.|+|..+
T Consensus 176 ~DivInaTp~gm 187 (271)
T 1npy_A 176 ADILVNVTSIGM 187 (271)
T ss_dssp CSEEEECSSTTC
T ss_pred CCEEEECCCCCc
Confidence 999999998654
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0026 Score=63.91 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=60.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||+|||+|.||..++..+.+. +++|+ ++|++++.++...+. .|. ....+++++ +
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ll 60 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LGV------------EKAYKDPHELI 60 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HTC------------SEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hCC------------CceeCCHHHHh
Confidence 5899999999999999988775 67765 789999887653321 110 112445544 4
Q ss_pred c--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 225 ~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
+ ++|+||.|+|..... ++.....+. ...+++--..++++.+
T Consensus 61 ~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~e 103 (344)
T 3ezy_A 61 EDPNVDAVLVCSSTNTHS--ELVIACAKA--KKHVFCEKPLSLNLAD 103 (344)
T ss_dssp HCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESCSCSCHHH
T ss_pred cCCCCCEEEEcCCCcchH--HHHHHHHhc--CCeEEEECCCCCCHHH
Confidence 4 799999999987643 222222221 1235555444555554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=63.93 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=62.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .|. ....+++++
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~l 62 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LAI------------PVAYGSYEEL 62 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TTC------------CCCBSSHHHH
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cCC------------CceeCCHHHH
Confidence 46999999999999999999885 67766 789998876653211 111 123445544
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
+. ++|+|+.|+|..... ++.....+. ...+++-...+.+.++.
T Consensus 63 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~e~ 107 (330)
T 3e9m_A 63 CKDETIDIIYIPTYNQGHY--SAAKLALSQ--GKPVLLEKPFTLNAAEA 107 (330)
T ss_dssp HHCTTCSEEEECCCGGGHH--HHHHHHHHT--TCCEEECSSCCSSHHHH
T ss_pred hcCCCCCEEEEcCCCHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence 33 799999999988653 222222221 12356555555665543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0058 Score=57.36 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=81.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.+|..-+..|.++|.+|++++.+.... +..+.+.|.++ .+...-..+++.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~----------l~~l~~~~~i~---------~i~~~~~~~dL~~a 92 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE----------INEWEAKGQLR---------VKRKKVGEEDLLNV 92 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH----------HHHHHHTTSCE---------EECSCCCGGGSSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH----------HHHHHHcCCcE---------EEECCCCHhHhCCC
Confidence 689999999999999999999999999998764311 11122333321 11111223568899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~~ 305 (521)
|+||-|. .+.++...+.. .+. ..|++ |... .|+ -+.|+.|. ...+++.-|.+.+.+|
T Consensus 93 dLVIaAT-~d~~~N~~I~~----~ak-~gi~V-NvvD-----------~p~---~~~f~~Paiv~rg~l~iaIST~G~sP 151 (223)
T 3dfz_A 93 FFIVVAT-NDQAVNKFVKQ----HIK-NDQLV-NMAS-----------SFS---DGNIQIPAQFSRGRLSLAISTDGASP 151 (223)
T ss_dssp SEEEECC-CCTHHHHHHHH----HSC-TTCEE-EC-------------------CCSEECCEEEEETTEEEEEECTTSCH
T ss_pred CEEEECC-CCHHHHHHHHH----HHh-CCCEE-EEeC-----------Ccc---cCeEEEeeEEEeCCEEEEEECCCCCc
Confidence 9999764 56555555443 345 33444 3211 122 12355554 3467777778888899
Q ss_pred HHHHHHHHHHHh
Q 009963 306 QVIVDLLDIGKK 317 (521)
Q Consensus 306 e~~~~~~~l~~~ 317 (521)
.....+++-++.
T Consensus 152 ~la~~iR~~ie~ 163 (223)
T 3dfz_A 152 LLTKRIKEDLSS 163 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877665
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0011 Score=65.78 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=59.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||..++..+.+. ++++ .++|+++++++...+ .+...+++++
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~ 64 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSV 64 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHH
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHH
Confidence 46899999999999999999885 6664 599999987543110 0223445544
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL 269 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ 269 (521)
++ ++|+|+.|+|..... ++..+. +..+. +++....++++.+
T Consensus 65 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~v~~eKP~~~~~~~ 108 (315)
T 3c1a_A 65 VSAPEVEAVIIATPPATHA--EITLAA---IASGKAVLVEKPLTLDLAE 108 (315)
T ss_dssp HTCTTCCEEEEESCGGGHH--HHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred hhCCCCCEEEEeCChHHHH--HHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence 43 799999999977542 333332 22343 5554455556543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0026 Score=64.31 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=62.1
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cc
Q 009963 147 VKKVAILG-GGLMGSGIATALILSNY--P---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VL 219 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~iA~~la~~G~--~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~ 219 (521)
..||+||| +|.+|.+++..++..+. + |.++|.+.+..+...+...- -...+.. .....+.. +.
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~am----DL~h~~~------p~~~~v~i~~~ 101 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM----ELEDSLY------PLLREVSIGID 101 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH----HHHTTTC------TTEEEEEEESC
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHH----hHHhhhh------hhcCCcEEecC
Confidence 46999999 79999999999998875 3 88876654332111111000 0111110 01122333 34
Q ss_pred CcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 220 DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 220 ~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++++++||+||.+. |- |..+-+.+...+.++..+++++...|..
T Consensus 102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 588999999999864 21 1123333444566665677777655543
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00024 Score=74.51 Aligned_cols=119 Identities=21% Similarity=0.211 Sum_probs=73.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh--hcccCCCCCch--------HHHHHHHHHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT--LYKTDKIEPLG--------EAREIFKFAR 70 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~--~~~~~~~~~~~--------~~~~~~~~a~ 70 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |.... ........... .....+..++
T Consensus 198 LlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~-p~Av~~K~l~~~~l~r~~~~~gl~y~~~~~ai~ra~ 276 (556)
T 2w3p_A 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQS-DRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAK 276 (556)
T ss_dssp HTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTC-CCCTTCCCCCCCCCCCEEETTEEEETTEEEEEETTT
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCC-hHHHhhhhhhcchhhhhhhhccccHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998863 32111 00000110000 0000111122
Q ss_pred HHHHHh-CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHH-HHHHHHHHhhccCC
Q 009963 71 AQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC-KSLVHIFFAQRGTS 132 (521)
Q Consensus 71 ~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a-~~~~~aF~~kr~~~ 132 (521)
+.+..+ .++.|+|.++++++..+. ..|..+..+++. .+++++|+.+....
T Consensus 277 r~a~~~~~g~~~a~~~~ld~i~aa~------------~~~~~l~~~~el~~All~l~~ne~~~~ 328 (556)
T 2w3p_A 277 RIATFTAKAPQTEPPASIDAIVAAG------------ANWWPLKFAREFDDAILSMRTNELAVG 328 (556)
T ss_dssp TEEEEEEECCSSCCCCSHHHHHHHG------------GGSHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHhcCCCCCchhhHHHHHHhh------------hcchhhhhhhHHHHHHHhhhhccHHHh
Confidence 222222 235677877787777553 344555555666 77899999877653
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=65.40 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=35.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|+|+|+|.||..+|..|...|.+|+++|+++++++.
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~ 211 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSA 211 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 58999999999999999999999999999999987664
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00017 Score=70.29 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (521)
++|.|||+|.||.+++..|++.|+ +|++++|++++++.
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 579999999999999999999999 99999999876543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=66.64 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=50.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||+|.||..++..+...|. +|+++|+++++++...+. .|. ..+. ..++ +.+.
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~----------~g~----------~~~~-~~~l~~~l~ 226 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD----------LGG----------EAVR-FDELVDHLA 226 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH----------HTC----------EECC-GGGHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH----------cCC----------ceec-HHhHHHHhc
Confidence 589999999999999999999998 899999999876432211 121 0011 1122 3357
Q ss_pred CCCEEEEecccchh
Q 009963 226 DVDMVIEAIIENVS 239 (521)
Q Consensus 226 ~aDlVIeav~e~~~ 239 (521)
++|+||+|++....
T Consensus 227 ~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 227 RSDVVVSATAAPHP 240 (404)
T ss_dssp TCSEEEECCSSSSC
T ss_pred CCCEEEEccCCCCc
Confidence 89999999976543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=62.54 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=36.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
+++.|+|+|-||.+++..|++.|. +|++++|++++++...
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la 161 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR 161 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 689999999999999999999996 9999999998876643
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0016 Score=63.60 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~ 189 (521)
+++.|+|+|-+|.+++..|+..|. +|++++|++++++...+.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~ 170 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 589999999999999999999999 699999999987765443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=66.05 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=60.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|+|.+|.++|..|+..|.+|+++|++++.+..+. ..|. . ..+. +.+..
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-----------~~g~-------------d-v~~lee~~~~ 320 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-----------MEGL-------------Q-VLTLEDVVSE 320 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCGGGTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-----------HhCC-------------c-cCCHHHHHHh
Confidence 5899999999999999999999999999999998765532 1121 1 1223 44678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+|+++.....-+..+ ..+.++++++|+...
T Consensus 321 aDvVi~atG~~~vl~~e----~l~~mk~gaiVvNaG 352 (488)
T 3ond_A 321 ADIFVTTTGNKDIIMLD----HMKKMKNNAIVCNIG 352 (488)
T ss_dssp CSEEEECSSCSCSBCHH----HHTTSCTTEEEEESS
T ss_pred cCEEEeCCCChhhhhHH----HHHhcCCCeEEEEcC
Confidence 99999886433222222 344578888886444
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0061 Score=61.13 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=60.7
Q ss_pred eEEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|||+|.||..++..+. + .+++|+ ++|+++++++...+. .|. .....+++++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~-----------~~~~~~~~~~l 61 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL-----------NATVYPNDDSL 61 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC-----------CCEEESSHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-----------CCeeeCCHHHH
Confidence 58999999999999999998 4 467765 889999887653211 110 1223455654
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCC-ceEEecCCcCcHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNL 269 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ 269 (521)
++ ++|+|+.|+|..... ++.... +..+ .+++--..+.+.++
T Consensus 62 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~vl~EKP~a~~~~e 105 (344)
T 3mz0_A 62 LADENVDAVLVTSWGPAHE--SSVLKA---IKAQKYVFCEKPLATTAEG 105 (344)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEECSCSCSSHHH
T ss_pred hcCCCCCEEEECCCchhHH--HHHHHH---HHCCCcEEEcCCCCCCHHH
Confidence 33 599999999987653 222222 2223 35554444555554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00077 Score=64.66 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=31.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
++|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999998 899999987
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=66.21 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=36.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~ 207 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE 207 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 7999999999999999999999999999999999877653
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.006 Score=61.38 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=51.2
Q ss_pred cceEEEEEeCChhhH-HHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGS-GIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+..||+|||+|.||. .++..+.+. +++|+ ++|+++++++...+. .| +...++++
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~ 82 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FG-------------GEPVEGYP 82 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HC-------------SEEEESHH
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CCCcCCHH
Confidence 346899999999998 788888877 77765 889999876653221 11 11234554
Q ss_pred c-cc--CCCEEEEecccchhh
Q 009963 223 S-FK--DVDMVIEAIIENVSL 240 (521)
Q Consensus 223 ~-~~--~aDlVIeav~e~~~~ 240 (521)
+ ++ ++|+|+.|+|.....
T Consensus 83 ~ll~~~~~D~V~i~tp~~~h~ 103 (350)
T 3rc1_A 83 ALLERDDVDAVYVPLPAVLHA 103 (350)
T ss_dssp HHHTCTTCSEEEECCCGGGHH
T ss_pred HHhcCCCCCEEEECCCcHHHH
Confidence 4 33 689999999988653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00087 Score=62.43 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
|||.|+|+ |.+|+.++..|++.|++|++.+++++.+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 47999998 999999999999999999999999887653
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.024 Score=58.62 Aligned_cols=149 Identities=14% Similarity=0.179 Sum_probs=82.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---C----CHHHHHhh--hcccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGK---M----TQEKFEKT--ISLLT 216 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~----~~~~~~~~--~~~i~ 216 (521)
.||||||+|.||..++..+.+. +.+ |.++|+++++++...++. + |. + +..++... .....
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---y------G~~~~~~~~~~~~~i~~a~~~g~~~ 94 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---Y------GDEENAREATTESAMTRAIEAGKIA 94 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---H------SSSTTEEECSSHHHHHHHHHTTCEE
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---c------CCccccccccchhhhhhhhccCCce
Confidence 5899999999999999887654 554 577899998876653221 0 10 0 11111111 11234
Q ss_pred cccCccc-cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHH---HHHHhhcCCCceeeccccccc
Q 009963 217 GVLDYES-FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPA 289 (521)
Q Consensus 217 ~~~~~~~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~P~ 289 (521)
.++|+++ ++ +.|+|++|+|....-..-....+ ..+. +++.|. .++.. +|.+.... -|..+.
T Consensus 95 v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk-~l~~~eg~eL~~~A~e----~Gvvl~--- 162 (446)
T 3upl_A 95 VTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNV-EADVTIGPYLKAQADK----QGVIYS--- 162 (446)
T ss_dssp EESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCH-HHHHHHHHHHHHHHHH----HTCCEE---
T ss_pred EECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCc-ccCHHHHHHHHHHHHH----hCCeee---
Confidence 5667754 33 68999999975321122222223 2333 333332 22222 22222211 122111
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+..+ ..+.....+.++.+.+|..++.++
T Consensus 163 -------~~~g--dqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 163 -------LGAG--DEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp -------ECTT--SHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred -------ecCC--cchHHHHHHHHHHHhCCCeEEEec
Confidence 1122 346667788889999999999997
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0027 Score=55.16 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=62.4
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+|||+ |.||..++..|.+.|++ +|++|+..... . ...+....++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~----------------~---------i~G~~~~~sl~e 66 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE----------------E---------LFGEEAVASLLD 66 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS----------------E---------ETTEECBSSGGG
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC----------------c---------CCCEEecCCHHH
Confidence 47999999 89999999999999997 77777753110 0 011223334545
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh-cCCCceee
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG 282 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~-~~~~r~ig 282 (521)
+ ..+|++|.++|.. .-.+++.++.+.-. ..++. ++++. -.++.+.. .+.-+++|
T Consensus 67 l~~~vDlavi~vp~~--~~~~v~~~~~~~gi-~~i~~-~~g~~-~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 67 LKEPVDILDVFRPPS--ALMDHLPEVLALRP-GLVWL-QSGIR-HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp CCSCCSEEEECSCHH--HHTTTHHHHHHHCC-SCEEE-CTTCC-CHHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEEEeCHH--HHHHHHHHHHHcCC-CEEEE-cCCcC-HHHHHHHHHHcCCEEEc
Confidence 4 4689999999874 33456666554433 34553 33333 34444433 23345555
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0018 Score=65.62 Aligned_cols=69 Identities=30% Similarity=0.348 Sum_probs=49.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-~ 222 (521)
+||.|||+|.+|+.+|..|++ .++|.+.|++.+.++++.+. . ..+.. ..| + +
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~-------------~---------~~~~~d~~d~~~l~~ 73 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF-------------A---------TPLKVDASNFDKLVE 73 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT-------------S---------EEEECCTTCHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc-------------C---------CcEEEecCCHHHHHH
Confidence 589999999999999998865 58999999999887764211 0 01111 112 2 2
Q ss_pred cccCCCEEEEecccchh
Q 009963 223 SFKDVDMVIEAIIENVS 239 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~ 239 (521)
.++++|+||.|+|....
T Consensus 74 ~~~~~DvVi~~~p~~~~ 90 (365)
T 3abi_A 74 VMKEFELVIGALPGFLG 90 (365)
T ss_dssp HHTTCSEEEECCCGGGH
T ss_pred HHhCCCEEEEecCCccc
Confidence 36899999999987643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0082 Score=61.88 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=59.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
++|.|+|.|.+|..++..|...|++|+++|.|++.++.+.. .|.. -+.. .++ +
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-----------~g~~----------vi~GDat~~~~L~~ 63 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-----------FGMK----------VFYGDATRMDLLES 63 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-----------TTCC----------CEESCTTCHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-----------CCCe----------EEEcCCCCHHHHHh
Confidence 47999999999999999999999999999999998876431 2210 0100 011 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
..+.+||+||.+++.+. ....+...+....+.-.|++
T Consensus 64 agi~~A~~viv~~~~~~-~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 64 AGAAKAEVLINAIDDPQ-TNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp TTTTTCSEEEECCSSHH-HHHHHHHHHHHHCTTCEEEE
T ss_pred cCCCccCEEEECCCChH-HHHHHHHHHHHhCCCCeEEE
Confidence 13688999999998654 33333344444433335554
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0086 Score=60.43 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=61.7
Q ss_pred cceEEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+..||+|||+|.||...+..+. . .+++|+ ++|+++++++...+. .|. .....++++
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~ 80 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDYH 80 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSHH
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCHH
Confidence 3468999999999999999988 4 377765 799999887654321 110 122345554
Q ss_pred c-cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 223 S-FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 223 ~-~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
+ ++ ++|+|+.|+|..... ++.....+. ...+++--.-+.++++
T Consensus 81 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKPla~~~~e 126 (357)
T 3ec7_A 81 DLINDKDVEVVIITASNEAHA--DVAVAALNA--NKYVFCEKPLAVTAAD 126 (357)
T ss_dssp HHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHH
T ss_pred HHhcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCCEEeecCccCCHHH
Confidence 4 33 689999999987653 333332221 1235554444555554
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=58.49 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=32.0
Q ss_pred cceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCH
Q 009963 146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNE 180 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~ 180 (521)
.++||.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3689999999999995 9999999999999999975
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.002 Score=62.83 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=35.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (521)
+++.|+|+|-+|.+++..|...|. +|++++|+.++++.
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~ 161 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE 161 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 589999999999999999999998 89999999987655
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0089 Score=60.34 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=50.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||..++..+... ++++ .++|+++++++...+ +.|. . ......+++++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~-~--------~~~~~~~~~~~l 66 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESL 66 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHH
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-C--------CCCeeeCCHHHH
Confidence 46999999999999999988875 5665 688999987654321 1121 0 01123445554
Q ss_pred cc--CCCEEEEecccchh
Q 009963 224 FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~ 239 (521)
++ ++|+|+.|+|....
T Consensus 67 l~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 67 LEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp HHCTTCCEEEECCCGGGH
T ss_pred hcCCCCCEEEEcCChHHH
Confidence 33 69999999997754
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0039 Score=61.02 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|+|+|.||.++|..|++.| +|++++++.++++...+
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~ 168 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAK 168 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHH
Confidence 57999999999999999999999 99999999987766543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0058 Score=63.98 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=37.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
-|||.|+|+|.+|..+|..|...|++|+++|.|++.++...
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~ 43 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ 43 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 37899999999999999999999999999999999887643
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0033 Score=64.74 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=36.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~ 188 (521)
|+||+|+|+|.+|..++..|++.| .+|+++|++.++++...+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999998 389999999998776543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=59.40 Aligned_cols=69 Identities=29% Similarity=0.274 Sum_probs=49.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||+|||+|.||...+..+.+. +++|+ ++|+++++++.+. +.| +...+++++ +
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~g-------------~~~~~~~~~ll 61 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QKG-------------LKIYESYEAVL 61 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TTT-------------CCBCSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hcC-------------CceeCCHHHHh
Confidence 5899999999999999988876 67765 7799998764321 112 223455544 3
Q ss_pred c--CCCEEEEecccchhh
Q 009963 225 K--DVDMVIEAIIENVSL 240 (521)
Q Consensus 225 ~--~aDlVIeav~e~~~~ 240 (521)
+ ++|+|+.|+|.....
T Consensus 62 ~~~~~D~V~i~tp~~~h~ 79 (359)
T 3e18_A 62 ADEKVDAVLIATPNDSHK 79 (359)
T ss_dssp HCTTCCEEEECSCGGGHH
T ss_pred cCCCCCEEEEcCCcHHHH
Confidence 3 799999999987653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0073 Score=59.82 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=35.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~ 188 (521)
+++.|+|+|-+|.+++..|+..|. +|++++|+ .++++...+
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~ 199 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE 199 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence 589999999999999999999999 89999999 776665443
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.012 Score=61.01 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=51.3
Q ss_pred ccceEEEEEeCChhhH-HHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 145 RRVKKVAILGGGLMGS-GIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+..||+|||+|.||. .++..+.+. +++| .++|++++.++...+ +.|. .. ..+...+++
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~----------~~g~-~~-------~~~~~~~~~ 142 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYGV-DP-------RKIYDYSNF 142 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTTC-CG-------GGEECSSSG
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-Cc-------ccccccCCH
Confidence 3456999999999997 888888765 5664 689999987654321 1121 00 012234556
Q ss_pred cc-cc--CCCEEEEecccchh
Q 009963 222 ES-FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 222 ~~-~~--~aDlVIeav~e~~~ 239 (521)
++ ++ ++|+|+.|+|....
T Consensus 143 ~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 143 DKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp GGGGGCTTCCEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEEcCCchhH
Confidence 54 33 79999999998764
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0062 Score=60.07 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=43.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|||+|.||..++..+.+. +++|+ ++|++++.++. .|. ......++....
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~~ 64 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQLE 64 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGSS
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhCC
Confidence 5899999999999999998874 67876 79999875431 121 011123333447
Q ss_pred CCCEEEEecccchh
Q 009963 226 DVDMVIEAIIENVS 239 (521)
Q Consensus 226 ~aDlVIeav~e~~~ 239 (521)
++|+||.|+|....
T Consensus 65 ~~DvViiatp~~~h 78 (304)
T 3bio_A 65 SVDVALVCSPSREV 78 (304)
T ss_dssp SCCEEEECSCHHHH
T ss_pred CCCEEEECCCchhh
Confidence 89999999997654
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0045 Score=61.55 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=57.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
.||+|||+|.||..++..+.+. +++ |.++|++++. +. + . .+..+++++++
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~--------------~----------~-gv~~~~d~~~ll 56 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT--------------K----------T-PVFDVADVDKHA 56 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS--------------S----------S-CEEEGGGGGGTT
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh--------------c----------C-CCceeCCHHHHh
Confidence 5899999999999999998876 566 4688988653 10 0 0 12233455443
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHH
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI 270 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~i 270 (521)
.++|+||+|+|..... ..+. ..+..+. ++++.+.++++.++
T Consensus 57 ~~~DvViiatp~~~h~-~~~~----~al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 57 DDVDVLFLCMGSATDI-PEQA----PKFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp TTCSEEEECSCTTTHH-HHHH----HHHTTTSEEECCCCCGGGHHHH
T ss_pred cCCCEEEEcCCcHHHH-HHHH----HHHHCCCEEEECCCCcCCHHHH
Confidence 7899999999887532 2222 2333344 55555545555554
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=58.88 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=34.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
|||.|+|+ |.+|+.++..|++.|++|++++++++.++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ 39 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence 47999996 999999999999999999999999876543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0043 Score=61.36 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=35.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~ 187 (521)
+++.|+|+|-+|.+++..|+..|. +|++++|+ .++++...
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la 192 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA 192 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence 589999999999999999999998 89999999 66655543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0069 Score=58.56 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=35.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++||.|+|+|.+|+.++..|++.|++|++.+++++..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 43 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA 43 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence 479999999999999999999999999999999876543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0069 Score=60.45 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=49.9
Q ss_pred ceEEEEEeCChhhH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||. .++..+...|++| .++|+++++++...++ .+ .....+++++
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------~~------------~~~~~~~~~~l 61 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------FP------------SVPFAASAEQL 61 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------ST------------TCCBCSCHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------cC------------CCcccCCHHHH
Confidence 35899999999996 6777777778885 6899999876553211 11 1223456654
Q ss_pred cc--CCCEEEEecccchh
Q 009963 224 FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~ 239 (521)
++ ++|+|+.|+|....
T Consensus 62 l~~~~~D~V~i~tp~~~h 79 (336)
T 2p2s_A 62 ITDASIDLIACAVIPCDR 79 (336)
T ss_dssp HTCTTCCEEEECSCGGGH
T ss_pred hhCCCCCEEEEeCChhhH
Confidence 33 69999999998765
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0064 Score=62.43 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=35.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|+|||+|.+|..++..+...|.+|+++|++++.++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999999877654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.012 Score=51.16 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=61.4
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+|||+ |.||..++..|.+.|++ +|++|+.. +. + ..+....++++
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~-----------------i---------~G~~~y~sl~~ 73 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE-----------------V---------LGRKCYPSVLD 73 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE-----------------E---------TTEECBSSGGG
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce-----------------E---------CCeeccCCHHH
Confidence 47999999 79999999999999997 56666642 10 0 11222334545
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc-CCCceee
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVG 282 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~-~~~r~ig 282 (521)
+ ..+|+||.++|.. .-.+++.++.+.- ...++.. ++..-.++.+... +.-+++|
T Consensus 74 l~~~vDlvvi~vp~~--~~~~vv~~~~~~g-i~~i~~~--~g~~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 74 IPDKIEVVDLFVKPK--LTMEYVEQAIKKG-AKVVWFQ--YNTYNREASKKADEAGLIIVA 129 (144)
T ss_dssp CSSCCSEEEECSCHH--HHHHHHHHHHHHT-CSEEEEC--TTCCCHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEEeCHH--HHHHHHHHHHHcC-CCEEEEC--CCchHHHHHHHHHHcCCEEEc
Confidence 4 4699999999874 3456666655432 2355533 3333445544432 2345554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0077 Score=60.41 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=50.3
Q ss_pred ccceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 145 RRVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+|.||||||+|.||.. .+..+... +.+|+ ++|+++++++...++ -| .-...+|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g------------~~~~y~d~ 78 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------FS------------VPHAFGSY 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------HT------------CSEEESSH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC------------CCeeeCCH
Confidence 45679999999999975 45566554 66765 789999987654321 11 11234566
Q ss_pred cc-c--cCCCEEEEecccchhh
Q 009963 222 ES-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 222 ~~-~--~~aDlVIeav~e~~~~ 240 (521)
++ + .+.|+|+.|+|.....
T Consensus 79 ~ell~~~~iDaV~I~tP~~~H~ 100 (350)
T 4had_A 79 EEMLASDVIDAVYIPLPTSQHI 100 (350)
T ss_dssp HHHHHCSSCSEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEeCCCchhH
Confidence 55 3 4689999999988653
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.011 Score=59.54 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=59.5
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. ++..+.+. +++|+ ++|+++++++...+ . .......+++++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~~ 62 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-----------F-----------ISDIPVLDNVPA 62 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-----------T-----------SCSCCEESSHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------h-----------cCCCcccCCHHH
Confidence 358999999999985 88888765 67765 88999987654321 1 112233456654
Q ss_pred -cc--CCCEEEEecccchhhHHHHHHHHHhhCCCC-ceEEecCCcCcHHH
Q 009963 224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNL 269 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ 269 (521)
++ +.|+|+.|+|..... ++..... ..+ .+++---.+.++++
T Consensus 63 ll~~~~vD~V~i~tp~~~H~--~~~~~al---~aGkhVl~EKPla~~~~e 107 (359)
T 3m2t_A 63 MLNQVPLDAVVMAGPPQLHF--EMGLLAM---SKGVNVFVEKPPCATLEE 107 (359)
T ss_dssp HHHHSCCSEEEECSCHHHHH--HHHHHHH---HTTCEEEECSCSCSSHHH
T ss_pred HhcCCCCCEEEEcCCcHHHH--HHHHHHH---HCCCeEEEECCCcCCHHH
Confidence 33 569999999976543 3332222 223 35554444555543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0031 Score=64.49 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=35.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999999999999998776654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.24 E-value=0.024 Score=56.44 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=60.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.||+|||+|.||...+..+...+ ++ |.++|+++++++...+. .|. -...+++++
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~~------------~~~~~~~~~ 60 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HDI------------PKAYGSYEE 60 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HTC------------SCEESSHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cCC------------CcccCCHHH
Confidence 59999999999999999887654 23 56789999887653321 111 122455654
Q ss_pred -cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
++ ++|+|+.|+|..... ++.....+. ...+++----+.+.++.
T Consensus 61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~ 106 (334)
T 3ohs_X 61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEV 106 (334)
T ss_dssp HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHH
T ss_pred HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHH
Confidence 33 699999999988653 222222221 12355554445555543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0069 Score=60.34 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=59.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
..||+|||+|.||..++..+... +++| .++|+++++++... ++. +.....+++++
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a-----------~~~-----------~~~~~~~~~~~l 62 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA-----------NKY-----------HLPKAYDKLEDM 62 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CC-----------CCSCEESCHHHH
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------HHc-----------CCCcccCCHHHH
Confidence 46899999999999999988765 4554 47899988654421 110 11113455544
Q ss_pred cc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
+. ++|+|+.|+|..... ++.....+. ...+++-..-+.+.++.
T Consensus 63 l~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKP~a~~~~e~ 107 (329)
T 3evn_A 63 LADESIDVIYVATINQDHY--KVAKAALLA--GKHVLVEKPFTLTYDQA 107 (329)
T ss_dssp HTCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred hcCCCCCEEEECCCcHHHH--HHHHHHHHC--CCeEEEccCCcCCHHHH
Confidence 44 799999999987653 222222221 12355555545555543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0018 Score=62.89 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred cceEEEEEe-CChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILG-GGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG-~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
++.||+|+| .|.||..++..+... +++++. +|++.+... +. ..+.+. .....+..+.+++
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G~-----------d~gel~-----g~~~gv~v~~dl~ 68 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-GQ-----------DAGAFL-----GKQTGVALTDDIE 68 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-TS-----------BTTTTT-----TCCCSCBCBCCHH
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-cc-----------cHHHHh-----CCCCCceecCCHH
Confidence 457999999 799999999988765 677665 688753210 00 001100 0001233345554
Q ss_pred c-ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 223 ~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
+ +.++|+||++.+... .+.-+...+..+.-+++.|++++..+
T Consensus 69 ~ll~~~DVVIDfT~p~a-----~~~~~~~al~~G~~vVigTTG~s~~~ 111 (272)
T 4f3y_A 69 RVCAEADYLIDFTLPEG-----TLVHLDAALRHDVKLVIGTTGFSEPQ 111 (272)
T ss_dssp HHHHHCSEEEECSCHHH-----HHHHHHHHHHHTCEEEECCCCCCHHH
T ss_pred HHhcCCCEEEEcCCHHH-----HHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 4 578999999875432 22222333333444555566666553
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.061 Score=51.38 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=75.9
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHH---hhcCC-CceeecccccccCCCC
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSK-DRIVGAHFFSPAHVMP 293 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~---~~~~~-~r~ig~hf~~P~~~~~ 293 (521)
++|.++++++|++|.=.|-.- .--.+.+++.+++++++||+ ||-|+|.-.+.. .+.+. -.+..+||-. +..+.
T Consensus 133 sDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaa-VPgt~ 209 (358)
T 2b0j_A 133 SDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGC-VPEMK 209 (358)
T ss_dssp SCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSS-CTTTC
T ss_pred cchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence 345688999999999998653 34578899999999999885 777887765543 34433 3445555543 22233
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.-........+++.++.+.++.+..|+.+.++.
T Consensus 210 Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 210 GQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 334455556789999999999999999999885
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0056 Score=59.71 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=55.0
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.|. +|..+|..|...|.+|+++++....++. .+.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence 6899999865 8999999999999999999974332210 023678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++...-++. ..+++++++++..+.
T Consensus 211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGTT 241 (300)
T ss_dssp CSEEEECSCCTTCBCG-------GGSCTTCEEEECCCE
T ss_pred CCEEEECCCCCCCCcH-------HhcCCCcEEEEEecc
Confidence 9999999975432322 346889988876543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0053 Score=57.06 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=33.9
Q ss_pred ceEEEEEeC-ChhhHHHHHHHH-hCCCcEEEEeCCHH-HHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALI-LSNYPVILKEVNEK-FLEA 185 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la-~~G~~V~l~d~~~~-~~~~ 185 (521)
+++|.|.|+ |.+|..++..|+ +.|++|++.+++++ .++.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~ 46 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP 46 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence 345999996 999999999999 89999999999988 6543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0062 Score=63.52 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=35.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
.++|.|+|+|.||..++..|++.|++|+++|+++++++.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~ 41 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK 41 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence 468999999999999999999999999999999887654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0063 Score=59.52 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.++..|+.+|+ +++++|.|.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 589999999999999999999997 899999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=60.02 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=54.3
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.| .+|..+|..|...|.+|++++++...++ +.+++
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~ 193 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS 193 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence 589999987 5899999999999999999986422111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++...-++. ..+++++++++..+.
T Consensus 194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGIN 224 (276)
T ss_dssp SSEEEECSSCTTCBCG-------GGCCTTCEEEECCCE
T ss_pred CCEEEECCCCCccccH-------hhccCCcEEEEeccC
Confidence 9999999975432332 346889988876543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.011 Score=61.88 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=35.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHH
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEA 185 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~ 185 (521)
+.++|.|+|+|.+|..++..|++. |++|+++|+++++++.
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~ 62 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQA 62 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 357899999999999999999998 7899999999987665
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.023 Score=53.36 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=58.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y- 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~- 221 (521)
-++|.|+|+|.+|..++..|...|+ |+++|++++.++... .|. ..+.. .++ +
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------~~~----------~~i~gd~~~~~~l~ 65 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR------------SGA----------NFVHGDPTRVSDLE 65 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------TTC----------EEEESCTTCHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------cCC----------eEEEcCCCCHHHHH
Confidence 3689999999999999999999999 999999998765431 110 00110 011 1
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCC-ceEEecCC
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTS 263 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS 263 (521)
..+.+||.||.+++.+.. . .......+.+.++ .|++-..+
T Consensus 66 ~a~i~~ad~vi~~~~~d~~-n-~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 66 KANVRGARAVIVDLESDSE-T-IHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp HTTCTTCSEEEECCSCHHH-H-HHHHHHHHHHCSSSEEEEECSS
T ss_pred hcCcchhcEEEEcCCCcHH-H-HHHHHHHHHHCCCCeEEEEECC
Confidence 237899999999987632 2 2222333334555 56654433
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.019 Score=57.95 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=47.7
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. .+..+... +++| .++|+++++++. +.+ .....+++++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~~ 61 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DLP------------DVTVIASPEA 61 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HCT------------TSEEESCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCcEECCHHH
Confidence 468999999999997 56666654 6776 488999976431 111 1223456654
Q ss_pred -cc--CCCEEEEecccchhh
Q 009963 224 -FK--DVDMVIEAIIENVSL 240 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~ 240 (521)
++ ++|+|+.|+|.....
T Consensus 62 ll~~~~~D~V~i~tp~~~H~ 81 (364)
T 3e82_A 62 AVQHPDVDLVVIASPNATHA 81 (364)
T ss_dssp HHTCTTCSEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEeCChHHHH
Confidence 34 799999999987653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0061 Score=58.39 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999998 789998763
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.051 Score=57.31 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=48.5
Q ss_pred ccceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 145 RRVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..+++|.|||.|..|.+ +|..|.+.|++|+++|.++..... .+.+.|. .+....+.+.
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~----------~l~~~gi-----------~~~~g~~~~~ 78 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQ----------HLTALGA-----------QIYFHHRPEN 78 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------EEESSCCGGG
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHH----------HHHHCCC-----------EEECCCCHHH
Confidence 35789999999999985 999999999999999987543211 1122331 1222234455
Q ss_pred ccCCCEEEEe--cccc
Q 009963 224 FKDVDMVIEA--IIEN 237 (521)
Q Consensus 224 ~~~aDlVIea--v~e~ 237 (521)
+.++|+||.+ ||.+
T Consensus 79 ~~~~d~vV~Spgi~~~ 94 (494)
T 4hv4_A 79 VLDASVVVVSTAISAD 94 (494)
T ss_dssp GTTCSEEEECTTSCTT
T ss_pred cCCCCEEEECCCCCCC
Confidence 7889999975 5543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0083 Score=58.49 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=54.9
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+++.|||.|. +|..+|..|...|.+|++++.+.. ++ +.++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~~ 207 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------------------------------HLDEEVN 207 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------SHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc--------------------------------------cHHHHhc
Confidence 6899999995 799999999999999999974422 22 3468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+||+||-|++...-++.+ .+++++++++..+.
T Consensus 208 ~ADIVI~Avg~p~~I~~~-------~vk~GavVIDVgi~ 239 (301)
T 1a4i_A 208 KGDILVVATGQPEMVKGE-------WIKPGAIVIDCGIN 239 (301)
T ss_dssp TCSEEEECCCCTTCBCGG-------GSCTTCEEEECCCB
T ss_pred cCCEEEECCCCcccCCHH-------HcCCCcEEEEccCC
Confidence 899999999764323332 46789999876654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0088 Score=59.13 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=60.4
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhccccc-----c--
Q 009963 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTG-----V-- 218 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~-----~-- 218 (521)
+++.|||+|.| |..+|..|+..|.+|+++|++..++.. +. .+. . ..... +
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~la-----~--~~~~~t~~~~t~~ 236 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGESLK-----L--NKHHVEDLGEYSE 236 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCCSS-----C--CCCEEEEEEECCH
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHHHh-----h--hcccccccccccH
Confidence 68999999976 999999999999999999998432211 00 000 0 00011 1
Q ss_pred cCc-ccccCCCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 219 LDY-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 219 ~~~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
.++ +.+.+||+||-|++...- ++.+ .+++++++++.++.-.+
T Consensus 237 ~~L~e~l~~ADIVIsAtg~p~~vI~~e-------~vk~GavVIDVgi~rD~ 280 (320)
T 1edz_A 237 DLLKKCSLDSDVVITGVPSENYKFPTE-------YIKEGAVCINFACTKNF 280 (320)
T ss_dssp HHHHHHHHHCSEEEECCCCTTCCBCTT-------TSCTTEEEEECSSSCCB
T ss_pred hHHHHHhccCCEEEECCCCCcceeCHH-------HcCCCeEEEEcCCCccc
Confidence 233 457899999999975432 3322 35788998888765433
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.049 Score=55.40 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=49.4
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGG-LMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|||+| .||..++..+... +++| .++|+++++++...+. .| +...+++++
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~el 59 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YG-------------IPVFATLAEM 59 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HT-------------CCEESSHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cC-------------CCeECCHHHH
Confidence 589999999 9999999888775 5665 4789999877653211 01 223445544
Q ss_pred c--cCCCEEEEecccchh
Q 009963 224 F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~--~~aDlVIeav~e~~~ 239 (521)
+ .++|+|+.|+|....
T Consensus 60 l~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 60 MQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp HHHSCCSEEEECSCGGGH
T ss_pred HcCCCCCEEEEcCCcHHH
Confidence 3 369999999998764
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.023 Score=56.43 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=30.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~ 180 (521)
+||.|+|+ |.+|+.++..|+..|+ +|+++|+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence 68999997 9999999999999996 899999975
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.043 Score=56.99 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=51.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---- 219 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 219 (521)
+..||+|||+|.||...+..+... |++| .++|+++++++...+.+. +.|. ......+
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~ 81 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND 81 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence 346899999999999999888774 6765 688999998766432211 1121 0011233
Q ss_pred Cccc-cc--CCCEEEEecccchh
Q 009963 220 DYES-FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 220 ~~~~-~~--~aDlVIeav~e~~~ 239 (521)
++++ ++ ++|+|+.|+|....
T Consensus 82 ~~~~ll~~~~vD~V~i~tp~~~h 104 (444)
T 2ixa_A 82 DYKNMLKDKNIDAVFVSSPWEWH 104 (444)
T ss_dssp THHHHTTCTTCCEEEECCCGGGH
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH
Confidence 5544 43 68999999997764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.03 Score=52.45 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~ 60 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE 60 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence 68999998 999999999999999999999999887654
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=57.97 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=47.0
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. .+..+... +++| .++|++++++.+ +.+ .....+++++
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~~ 59 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DFP------------DAEVVHELEE 59 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HCT------------TSEEESSTHH
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCceECCHHH
Confidence 369999999999997 56666554 6776 578999865321 111 1233456654
Q ss_pred -cc--CCCEEEEecccchhh
Q 009963 224 -FK--DVDMVIEAIIENVSL 240 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~ 240 (521)
++ ++|+|+.|+|.....
T Consensus 60 ll~~~~vD~V~i~tp~~~H~ 79 (358)
T 3gdo_A 60 ITNDPAIELVIVTTPSGLHY 79 (358)
T ss_dssp HHTCTTCCEEEECSCTTTHH
T ss_pred HhcCCCCCEEEEcCCcHHHH
Confidence 34 799999999987653
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.079 Score=53.37 Aligned_cols=96 Identities=8% Similarity=0.088 Sum_probs=59.0
Q ss_pred eEEEEEeCChhhH-HHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGS-GIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~-~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||||||+|.+|. .++..+...|++ |.++|+++++++...+. .| .....+++++ +
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~~------------~~~~~~~~~~ll 84 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------YA------------DARRIATAEEIL 84 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------SS------------SCCEESCHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------cC------------CCcccCCHHHHh
Confidence 5899999999995 567777778888 46889999887654321 11 1223456654 3
Q ss_pred --cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
.+.|+|+.|+|..... ++.....+. ...+++-.--+.+.++
T Consensus 85 ~~~~vD~V~I~tp~~~H~--~~~~~al~a--GkhVl~EKPla~~~~e 127 (361)
T 3u3x_A 85 EDENIGLIVSAAVSSERA--ELAIRAMQH--GKDVLVDKPGMTSFDQ 127 (361)
T ss_dssp TCTTCCEEEECCCHHHHH--HHHHHHHHT--TCEEEEESCSCSSHHH
T ss_pred cCCCCCEEEEeCChHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHH
Confidence 3589999999977543 332222221 2235554444455543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.029 Score=53.36 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=26.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCC
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVN 179 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~ 179 (521)
+||+|+|+ |.||..++..+... |++|+ ++|++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~ 35 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG 35 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence 38999997 99999999988765 88876 55654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.032 Score=57.04 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=50.7
Q ss_pred ceEEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
..||+|||+|. ||...+..+...+ ++|+ ++|+++++++...++ .|. . .....++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~~ 71 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LGV-D---------SERCYAD 71 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TTC-C---------GGGBCSS
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hCC-C---------cceeeCC
Confidence 46899999999 9999888877665 6776 579999887653321 121 0 0123456
Q ss_pred cccc-c-------CCCEEEEecccchhh
Q 009963 221 YESF-K-------DVDMVIEAIIENVSL 240 (521)
Q Consensus 221 ~~~~-~-------~aDlVIeav~e~~~~ 240 (521)
++++ + +.|+|+.|+|.....
T Consensus 72 ~~~ll~~~~~~~~~vD~V~i~tp~~~H~ 99 (398)
T 3dty_A 72 YLSMFEQEARRADGIQAVSIATPNGTHY 99 (398)
T ss_dssp HHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred HHHHHhcccccCCCCCEEEECCCcHHHH
Confidence 6443 2 499999999988653
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.075 Score=53.01 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=50.6
Q ss_pred ceEEEEEeCC-hhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGG-LMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G-~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
..||+|||+| .||...+..+... +++| .++|+++++++...++ .| .....+|++
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~~------------~~~~~~~~~ 75 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VG------------NPAVFDSYE 75 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HS------------SCEEESCHH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------hC------------CCcccCCHH
Confidence 4699999999 8999999988876 4565 6889999887653321 11 112345665
Q ss_pred c-c--cCCCEEEEecccchh
Q 009963 223 S-F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 223 ~-~--~~aDlVIeav~e~~~ 239 (521)
+ + .++|+|+.|+|....
T Consensus 76 ~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 76 ELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp HHHHSSCCSEEEECCCGGGH
T ss_pred HHhcCCCCCEEEEeCCchHH
Confidence 4 3 368999999997754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.077 Score=51.81 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=62.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc--
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES-- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 223 (521)
.+|..||+|..|.+... +++ .|.+|+.+|++++.++.+++.+.+. |. .++.+. .|...
T Consensus 124 ~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~ 185 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVID 185 (298)
T ss_dssp CEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGG
T ss_pred CEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCC
Confidence 58999999996644222 333 5889999999999999887654321 21 122221 11111
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
-...|+|+.+.. ..-+..+++++.+.++|+..++...
T Consensus 186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 246899997654 2346789999999999988776543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0058 Score=56.90 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=33.8
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+++|.|+|+ |.+|+.++..|++.|++|++.+++++.+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence 579999996 9999999999999999999999998754
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.049 Score=54.63 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. .+..+... +++|+ ++|+++++++. +. ......+++++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~ 61 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQM 61 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHH
Confidence 368999999999997 67777665 67764 88999876531 01 11233456654
Q ss_pred -c--cCCCEEEEecccchhh
Q 009963 224 -F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 224 -~--~~aDlVIeav~e~~~~ 240 (521)
+ .+.|+|+.|+|.....
T Consensus 62 ll~~~~vD~V~i~tp~~~H~ 81 (352)
T 3kux_A 62 LFNDPSIDLIVIPTPNDTHF 81 (352)
T ss_dssp HHHCSSCCEEEECSCTTTHH
T ss_pred HhcCCCCCEEEEeCChHHHH
Confidence 3 3599999999987653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=57.49 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=54.4
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.|. .|..+|..|...|..|++++++...++ +.+.+
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~ 203 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ 203 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence 6899999876 699999999999999999985432111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++...-++. +.+++++++++..+.
T Consensus 204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGIN 234 (285)
T ss_dssp CSEEEECSSCTTCBCG-------GGSCTTEEEEECCCE
T ss_pred CCEEEECCCCCCcCCH-------HHcCCCeEEEEeccC
Confidence 9999999975422322 356889988876543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0068 Score=58.75 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=54.3
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.|. .|..+|..|...|..|++++.....+. +.+++
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 202 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 202 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence 6899999996 599999999999999999975442221 23577
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||-|++...-++.+ .+++++++++..+.
T Consensus 203 ADIVI~Avg~p~lI~~~-------~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 203 ADLLIVAVGKPGFIPGD-------WIKEGAIVIDVGIN 233 (288)
T ss_dssp CSEEEECSCCTTCBCTT-------TSCTTCEEEECCCE
T ss_pred CCEEEECCCCcCcCCHH-------HcCCCcEEEEccCC
Confidence 99999999754323322 35889988876543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.011 Score=57.14 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=53.9
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.|. +|..+|..|...|.+|++.++....++ +.+.+
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 204 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK 204 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence 5899999876 799999999999999999975422111 24678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++...-++. +.+++++++++..+.
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVGIN 235 (285)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECCCE
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCcEEEEeccc
Confidence 9999999975422322 356889988876543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.029 Score=54.58 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=36.1
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+++.|+| +|-+|.+++..|++.|++|++.++++++++...+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 5789999 8999999999999999999999999887765443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=57.01 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=28.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-CCCcEE-EEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~ 181 (521)
+||+|+|+ |.||..++..+.. .|++|+ ++|++++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~ 42 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS 42 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence 69999999 9999999998764 578776 7788764
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.013 Score=56.60 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=53.6
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++.|||.|. .|..+|..|...|..|+++......++ +.+++
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~ 204 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR 204 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence 6899999865 899999999999999999875322111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++...-++. +.+++++++++..+.
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVGIN 235 (286)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECCSC
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCeEEEEeccc
Confidence 9999999975422322 356889988876543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=56.65 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=53.5
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGGGLM-GSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+++.|||.|.| |..+|..|... |..|++++++...+. +.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~ 201 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT 201 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence 58999999976 99999999999 899999875432221 346
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+||+||.|++...-++.+ .+++++++++..+
T Consensus 202 ~~ADIVI~Avg~p~~I~~~-------~vk~GavVIDVgi 233 (281)
T 2c2x_A 202 RQADIVVAAVGVAHLLTAD-------MVRPGAAVIDVGV 233 (281)
T ss_dssp TTCSEEEECSCCTTCBCGG-------GSCTTCEEEECCE
T ss_pred hhCCEEEECCCCCcccCHH-------HcCCCcEEEEccC
Confidence 7899999999754323333 3678888877654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.016 Score=54.07 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=30.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|+|||+|.-|...|..|+++|++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 49999999999999999999999999999864
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.053 Score=55.82 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred ceEEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
..||+|||+|. ||...+..+...+ ++|+ ++|+++++++...++ .|. . .....++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~~ 96 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGL-D---------PSRVYSD 96 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTC-C---------GGGBCSC
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCC-C---------cccccCC
Confidence 35899999999 9998888777665 6765 679999887654321 121 0 0023445
Q ss_pred ccc-cc-------CCCEEEEecccchhhHHHHHHHHHhhCCCC-ceEEecCCcCcHHH
Q 009963 221 YES-FK-------DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNL 269 (521)
Q Consensus 221 ~~~-~~-------~aDlVIeav~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ 269 (521)
+++ ++ +.|+|+.|+|..... ++... .+..+ .+++-.--+.++++
T Consensus 97 ~~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~---al~aGkhVl~EKPla~~~~e 149 (417)
T 3v5n_A 97 FKEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKE---FLKRGIHVICDKPLTSTLAD 149 (417)
T ss_dssp HHHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHH---HHTTTCEEEEESSSCSSHHH
T ss_pred HHHHHhcccccCCCCcEEEECCCcHHHH--HHHHH---HHhCCCeEEEECCCcCCHHH
Confidence 544 33 499999999987653 33322 22333 35554444455543
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.12 Score=51.73 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=57.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHH-HhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKF-EKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-~ 222 (521)
.||||+|+|.+|..++..+..+ +++|+ +.|.+++......+. +...-.|+. ..... ...-..+....+. +
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchHH
Confidence 5999999999999999998876 56754 446665444332211 000001222 11111 1111122222223 3
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.++|+|++|.+..... +... ..++..++.++++.+
T Consensus 78 ~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp TGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTT
T ss_pred hccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCC
Confidence 346999999999866421 1111 356666666665554
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.065 Score=56.22 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=51.5
Q ss_pred cceEEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009963 146 RVKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 146 ~~~kI~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (521)
+..||+|||+ |.||...+..+... +++| .++|+++++++...+. .|. ......
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~----------~~~~~~ 97 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGF 97 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEE
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------Ccceee
Confidence 3468999999 99999999998875 6775 5899999877653221 121 011234
Q ss_pred cCccc-c--cCCCEEEEecccchh
Q 009963 219 LDYES-F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 219 ~~~~~-~--~~aDlVIeav~e~~~ 239 (521)
+++++ + .++|+|+.|+|....
T Consensus 98 ~d~~ell~~~~vD~V~I~tp~~~H 121 (479)
T 2nvw_A 98 DSLESFAQYKDIDMIVVSVKVPEH 121 (479)
T ss_dssp SCHHHHHHCTTCSEEEECSCHHHH
T ss_pred CCHHHHhcCCCCCEEEEcCCcHHH
Confidence 55654 3 379999999997654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=58.97 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred eEEEEEeCChhhHHHHHH-H-Hh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATA-L-IL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~-l-a~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.||+|||+|.||..+... + .. .+++|+ ++|+++++.+... + ...+...+++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------~------------~~~~~~~~~~~~ 59 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------I------------YSHIHFTSDLDE 59 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------G------------GTTCEEESCTHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------h------------cCCCceECCHHH
Confidence 589999999999874333 3 22 367776 8899887542110 0 112234456654
Q ss_pred -cc--CCCEEEEecccchhh
Q 009963 224 -FK--DVDMVIEAIIENVSL 240 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~ 240 (521)
++ ++|+|+.|+|.....
T Consensus 60 ll~~~~~D~V~i~tp~~~h~ 79 (345)
T 3f4l_A 60 VLNDPDVKLVVVCTHADSHF 79 (345)
T ss_dssp HHTCTTEEEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEcCChHHHH
Confidence 34 489999999987653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=55.42 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=34.2
Q ss_pred ccceEEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHH
Q 009963 145 RRVKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFL 183 (521)
Q Consensus 145 ~~~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~ 183 (521)
..+++|.|.|+ |.+|..++..|++.| ++|++++++++.+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~ 61 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI 61 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence 45688999995 999999999999999 8999999998754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=59.37 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||.|||+|.-|...|..|+++|++|+++|++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5899999999999999999999999999998653
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.036 Score=56.86 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=49.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC---------CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGGGLMGSGIATALILS---------NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~---------G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
.||||||+|.||...+..+.+. +.+ |.++|++++++++..++ -| ....
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------~~------------~~~~ 84 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------LG------------AEKA 84 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------HT------------CSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------cC------------CCeE
Confidence 4899999999999888877654 334 45789999987764321 11 1123
Q ss_pred ccCccc-c--cCCCEEEEecccchhh
Q 009963 218 VLDYES-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 218 ~~~~~~-~--~~aDlVIeav~e~~~~ 240 (521)
.+|+++ + .+.|+|+.|+|.....
T Consensus 85 y~d~~~ll~~~~vD~V~I~tp~~~H~ 110 (412)
T 4gqa_A 85 YGDWRELVNDPQVDVVDITSPNHLHY 110 (412)
T ss_dssp ESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred ECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 456654 3 4689999999988653
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.04 Score=55.43 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.++..|+.+|. +++++|.+.
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 589999999999999999999998 899999863
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.14 Score=53.26 Aligned_cols=131 Identities=20% Similarity=0.269 Sum_probs=76.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|..|..-+..|.+.|.+|+++|.+... . +..+.+.+.++ .+...-+.+++.++
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~--~--------~~~l~~~~~i~---------~~~~~~~~~~l~~~ 73 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP--Q--------FTVWANEGMLT---------LVEGPFDETLLDSC 73 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH--H--------HHHHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCH--H--------HHHHHhcCCEE---------EEECCCCccccCCc
Confidence 68999999999999999999999999999985322 1 11112222221 11111223567899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~~ 305 (521)
|+||-| |.+.++...++....+ ..|.+...+. |+. ..|+.|. ...+++.-|.+...++
T Consensus 74 ~lVi~a-t~~~~~n~~i~~~a~~----~~i~vn~~d~------------~e~---~~~~~pa~~~~~~l~iaIsT~Gksp 133 (457)
T 1pjq_A 74 WLAIAA-TDDDTVNQRVSDAAES----RRIFCNVVDA------------PKA---ASFIMPSIIDRSPLMVAVSSGGTSP 133 (457)
T ss_dssp SEEEEC-CSCHHHHHHHHHHHHH----TTCEEEETTC------------TTS---SSEECCEEEEETTEEEEEECTTSCH
T ss_pred cEEEEc-CCCHHHHHHHHHHHHH----cCCEEEECCC------------ccc---CceEeeeEEEeCCeEEEEECCCCCh
Confidence 999875 5666666666665443 2233322222 111 1233343 2356444444666677
Q ss_pred HHHHHHHHHHHh
Q 009963 306 QVIVDLLDIGKK 317 (521)
Q Consensus 306 e~~~~~~~l~~~ 317 (521)
.....+++.++.
T Consensus 134 ~la~~ir~~ie~ 145 (457)
T 1pjq_A 134 VLARLLREKLES 145 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.029 Score=56.68 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 589999999999999999999998 89999998
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.043 Score=53.29 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|||.|.|+ |.+|+.++..|.++||+|++..|+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 58999998 99999999999999999999998764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.14 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=30.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|||+|..|..-+..|...|.+|++++.+.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 689999999999999999999999999998764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.094 Score=51.74 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.4
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCc-EEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALIL--SNYP-VILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~--~G~~-V~l~d~~~~~ 182 (521)
.||+|||+|.||..++..+.+ .+.+ |.++|+++++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~ 42 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS 42 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence 589999999999999998865 3554 4578998765
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.028 Score=55.85 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=93.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-----C--CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS-----N--YPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-----G--~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (521)
..||+|||.|.||+.++..+.+. | ++| .+.|++.+.++... .+.+......+.|.++ ....
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~i-dl~~~~~~~~~~g~~~---------~~~~- 72 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNL-DISSIISNKEKTGRIS---------DRAF- 72 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSC-CHHHHHHHHHHHSCSC---------SSBC-
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhccccc-CHHHHHHHhhhcCCCC---------cccC-
Confidence 35899999999999999988763 3 343 44566543211000 0000000011112111 0011
Q ss_pred cCcccc--cCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCc--HHHHHHhhcCCCceeecccccccCCCC
Q 009963 219 LDYESF--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHVMP 293 (521)
Q Consensus 219 ~~~~~~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~~~ 293 (521)
+..+.+ .+.|+||+|.|.+... ...+..+...+..+. +++.|...+. ..+|.+.... -|.+|+....++.
T Consensus 73 d~~e~l~~~~iDvVVe~T~~~~~~-~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~----~g~~~~~Ea~vg~ 147 (325)
T 3ing_A 73 SGPEDLMGEAADLLVDCTPASRDG-VREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQ----NSKYIRYEATVAG 147 (325)
T ss_dssp CSGGGGTTSCCSEEEECCCCCSSS-HHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH----HTCCEECGGGSST
T ss_pred CHHHHhcCCCCCEEEECCCCcccc-chHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHH----cCCeEEEEeeecc
Confidence 112223 4689999999865221 111122222233344 4444553221 1233332211 2444443333221
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRL 373 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~ 373 (521)
+ -..+..+++++ .|-....+. | |.|- ..|.-+.-.++|.+.+++-+-.+..||.- |==.
T Consensus 148 ------g----iPii~~l~~~l--~g~~I~~i~---G-i~nG----T~nyil~~m~~g~~f~~~l~~Aq~~GyaE-~DP~ 206 (325)
T 3ing_A 148 ------G----VPLFSVLDYSI--LPSKVKRFR---G-IVSS----TINYVIRNMANGRSLRDVVDDAIKKGIAE-SNPQ 206 (325)
T ss_dssp ------T----SCCHHHHHHTC--TTCCEEEEE---E-ECCH----HHHHHHHHHHTTCCHHHHHHHHHHHTCSC-SSTH
T ss_pred ------c----CHHHHHHHHHh--hCCCeeEEE---E-EEEe----eeeEEeecccCCCCHHHHHHHHHHcCCCC-CCcc
Confidence 1 01234455554 232222222 1 2222 23333322278888887777666667631 2225
Q ss_pred hhhcCchHHHHHh
Q 009963 374 ADLVGFGVAIATG 386 (521)
Q Consensus 374 ~D~~Gld~~~~~~ 386 (521)
.|.-|+|...++.
T Consensus 207 ~Dv~G~D~a~Kl~ 219 (325)
T 3ing_A 207 DDLNGLDAARKSV 219 (325)
T ss_dssp HHHTTHHHHHHHH
T ss_pred cccCChhHHHHHH
Confidence 7999999988754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.028 Score=54.75 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=56.9
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCcc
Q 009963 147 VKKVAILG-GGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~ 222 (521)
..||+|+| .|.||..++..+... +++++ ++|++..... |. +..+.... ...+..+.+++
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~----------------G~-d~gel~G~~~~gv~v~~dl~ 83 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV----------------DK-DASILIGSDFLGVRITDDPE 83 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT----------------TS-BGGGGTTCSCCSCBCBSCHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc----------------cc-chHHhhccCcCCceeeCCHH
Confidence 46999999 899999999988754 67754 5587643210 00 00000000 01233455665
Q ss_pred c-ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 223 ~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
+ +.++|+||++.+.+ .++..+...+..+.-+++.|++++.+
T Consensus 84 ~ll~~aDVvIDFT~p~-----a~~~~~~~~l~~Gv~vViGTTG~~~e 125 (288)
T 3ijp_A 84 SAFSNTEGILDFSQPQ-----ASVLYANYAAQKSLIHIIGTTGFSKT 125 (288)
T ss_dssp HHTTSCSEEEECSCHH-----HHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHhcCCCEEEEcCCHH-----HHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 4 67899999987533 23333333344455555666666654
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.059 Score=54.63 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=47.1
Q ss_pred ceEEEEEe-CChhhHH-HH----HHHHhCC-CcE----------EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 009963 147 VKKVAILG-GGLMGSG-IA----TALILSN-YPV----------ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~-iA----~~la~~G-~~V----------~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (521)
..||+||| +|.||.. .+ ..+.+.+ ..+ .++|+++++++...+. .|.
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~----------~~~------- 68 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR----------FNI------- 68 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH----------TTC-------
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH----------hCC-------
Confidence 35899999 9999998 66 6555543 232 4999999887654221 121
Q ss_pred hhhcccccccCccc-c--cCCCEEEEecccchh
Q 009963 210 KTISLLTGVLDYES-F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 210 ~~~~~i~~~~~~~~-~--~~aDlVIeav~e~~~ 239 (521)
-...+|+++ + .+.|+|+.|+|....
T Consensus 69 -----~~~~~~~~~ll~~~~iD~V~i~tp~~~h 96 (383)
T 3oqb_A 69 -----ARWTTDLDAALADKNDTMFFDAATTQAR 96 (383)
T ss_dssp -----CCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred -----CcccCCHHHHhcCCCCCEEEECCCchHH
Confidence 123456654 3 458999999998764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.065 Score=50.05 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=35.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 45 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHE 45 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56777776 7899999999999999999999999887765443
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.14 Score=53.20 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=31.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-+||.|||.|..|.+.|..|.+.|++|+++|.++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3689999999999999999999999999999965
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.087 Score=54.56 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=50.7
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 148 KKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
.||+|||+ |.||...+..+.+. +++| .++|+++++++...+. .|. ..+...++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~~~ 80 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAFPT 80 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEESS
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeCC
Confidence 58999999 99999999999886 6775 6899999876653211 121 01123455
Q ss_pred ccc-c--cCCCEEEEecccchh
Q 009963 221 YES-F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 221 ~~~-~--~~aDlVIeav~e~~~ 239 (521)
+++ + .++|+|+.|+|....
T Consensus 81 ~~~ll~~~~vD~V~i~tp~~~H 102 (438)
T 3btv_A 81 LESFASSSTIDMIVIAIQVASH 102 (438)
T ss_dssp HHHHHHCSSCSEEEECSCHHHH
T ss_pred HHHHhcCCCCCEEEEeCCcHHH
Confidence 654 3 369999999997754
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.067 Score=53.46 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=54.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhc--ccccccCc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTIS--LLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~--~i~~~~~~ 221 (521)
.||||+|+|.||..++..+.+. +++| .+.|++++....... +.|. .+..+....+. .+..+.+.
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~----------~~g~~~~~~~~~~~~~~~~~v~v~~~~ 71 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH----------RRGIRIYVPQQSIKKFEESGIPVAGTV 71 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH----------HTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH----------hcCcceecCcCHHHHhcccccccccCH
Confidence 4899999999999999998875 4455 466777554433221 1111 00000111111 12222333
Q ss_pred cc-ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 222 ES-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 222 ~~-~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
++ +.++|+||+|.|..... +.... ++..++.++++++.
T Consensus 72 e~l~~~vDvV~~aTp~~~s~--~~a~~---~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 72 EDLIKTSDIVVDTTPNGVGA--QYKPI---YLQLQRNAIFQGGE 110 (340)
T ss_dssp HHHHHHCSEEEECCSTTHHH--HHHHH---HHHTTCEEEECTTS
T ss_pred hHhhcCCCEEEECCCCchhH--HHHHH---HHHcCCeEEEeCCC
Confidence 33 35899999999876432 22222 22345555556554
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.061 Score=53.71 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=28.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLE 184 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~ 184 (521)
.||+|+|+|.||..+++.+.++ +++| .+.|++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~ 40 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA 40 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence 5899999999999999998874 5565 34577655443
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.039 Score=55.77 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=47.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCC--------Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 149 KVAILGGGLMGSGIATALILSN--------YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G--------~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
||||||+|.||..-+..+.... .+ |.++|+++++++...++ .| .-...+
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------~g------------~~~~~~ 65 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------LG------------WSTTET 65 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------HT------------CSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------cC------------CCcccC
Confidence 7999999999998777665431 23 46889999987664321 11 112345
Q ss_pred Cccc-c--cCCCEEEEecccchhh
Q 009963 220 DYES-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 220 ~~~~-~--~~aDlVIeav~e~~~~ 240 (521)
|+++ + .+.|+|+.|+|.....
T Consensus 66 d~~~ll~~~~iDaV~I~tP~~~H~ 89 (390)
T 4h3v_A 66 DWRTLLERDDVQLVDVCTPGDSHA 89 (390)
T ss_dssp CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred CHHHHhcCCCCCEEEEeCChHHHH
Confidence 6654 3 4689999999988754
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.075 Score=53.48 Aligned_cols=69 Identities=12% Similarity=0.236 Sum_probs=46.6
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||+|||+|.||.. .+..+... +++| .++|++++++.+ + .......+++++
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~ 59 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------R------------YPQASIVRSFKE 59 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------T------------CTTSEEESCSHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------h------------CCCCceECCHHH
Confidence 469999999999997 66666655 6776 478999764211 0 012233456654
Q ss_pred -cc--CCCEEEEecccchhh
Q 009963 224 -FK--DVDMVIEAIIENVSL 240 (521)
Q Consensus 224 -~~--~aDlVIeav~e~~~~ 240 (521)
++ ++|+|+.|+|.....
T Consensus 60 ll~~~~vD~V~i~tp~~~H~ 79 (362)
T 3fhl_A 60 LTEDPEIDLIVVNTPDNTHY 79 (362)
T ss_dssp HHTCTTCCEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEeCChHHHH
Confidence 33 489999999987653
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.069 Score=50.66 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=35.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 55 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASH 55 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46667776 8899999999999999999999999887765443
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.063 Score=51.18 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR 49 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 46777776 899999999999999999999999987765443
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.045 Score=51.45 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=34.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~ 44 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE 44 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46777876 88999999999999999999999998876643
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.046 Score=54.55 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=59.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc--
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-- 219 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-- 219 (521)
|.||+|+|+ |.+|..+...|..+ .+++..+..+. .+-+. +...+..+ +|. ..+....
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~----~~~~~p~~--~~~----------~~~~v~~~~ 67 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL----ISDLHPQL--KGI----------VELPLQPMS 67 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSB----HHHHCGGG--TTT----------CCCBEEEES
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCc----hHHhCccc--cCc----------cceeEeccC
Confidence 579999996 99999999999884 56777665443 21111 00000000 010 0111221
Q ss_pred Ccccc-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 220 DYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 220 ~~~~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
+.+.+ ++||+||+|+|... -+++..++ +..++.++++++...+
T Consensus 68 ~~~~~~~~~Dvvf~a~p~~~--s~~~~~~~---~~~g~~vIDlSa~fR~ 111 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATAHEV--SHDLAPQF---LEAGCVVFDLSGAFRV 111 (337)
T ss_dssp SGGGTCTTCSEEEECSCHHH--HHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred CHHHHhcCCCEEEECCChHH--HHHHHHHH---HHCCCEEEEcCCcccc
Confidence 34455 89999999998653 23444443 3467888899987643
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.088 Score=50.09 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=49.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
-++|+++|.|.||..++.. . ++++ .+|+ ++ .|.+ .+..++|.++ +
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k-----------------~gel----------gv~a~~d~d~ll 58 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI-----------------SKDI----------PGVVRLDEFQVP 58 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS-----------------CCCC----------SSSEECSSCCCC
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc-----------------cccc----------CceeeCCHHHHh
Confidence 3799999999999999998 4 8876 5566 21 1111 2234566654 4
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
+++|+|+||.+.. .+-..+.+.+..+.=+++
T Consensus 59 a~pD~VVe~A~~~-----av~e~~~~iL~aG~dvv~ 89 (253)
T 1j5p_A 59 SDVSTVVECASPE-----AVKEYSLQILKNPVNYII 89 (253)
T ss_dssp TTCCEEEECSCHH-----HHHHHHHHHTTSSSEEEE
T ss_pred hCCCEEEECCCHH-----HHHHHHHHHHHCCCCEEE
Confidence 7999999998532 222236667777654443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.012 Score=54.91 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=44.3
Q ss_pred eEEEEEeCChhhHHHHHH--HHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATA--LILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~--la~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.+|+|||+|.+|..++.. +...|+++ -++|.|++...... .| + .+...++++.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i------------~g-v----------~V~~~~dl~el 142 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV------------GG-V----------PVYNLDDLEQH 142 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE------------TT-E----------EEEEGGGHHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh------------cC-C----------eeechhhHHHH
Confidence 579999999999999994 44557765 57799987542200 00 0 1122334433
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLE 249 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~ 249 (521)
+++.|+||.|+|.... +++...+.
T Consensus 143 i~~~D~ViIAvPs~~~--~ei~~~l~ 166 (215)
T 2vt3_A 143 VKDESVAILTVPAVAA--QSITDRLV 166 (215)
T ss_dssp CSSCCEEEECSCHHHH--HHHHHHHH
T ss_pred HHhCCEEEEecCchhH--HHHHHHHH
Confidence 3444999999986542 35555443
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.019 Score=61.93 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~ 51 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT 51 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 589999999999999999999998 899999763
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.15 E-value=0.096 Score=52.22 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=27.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eC--CHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILK-EV--NEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~--~~~~~~~ 185 (521)
.||+|+|+|.+|.-+++.+..+ +++|+.+ |. +.+.+..
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ 45 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTY 45 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHH
Confidence 5899999999999999998876 5666554 42 4554433
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.064 Score=51.96 Aligned_cols=41 Identities=32% Similarity=0.526 Sum_probs=34.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 75 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAG 75 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 35666665 889999999999999999999999988776543
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.037 Score=55.97 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=44.7
Q ss_pred EEEEEeCChhhHHHHHHHHh--------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 149 KVAILGGGLMGSGIATALIL--------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~--------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
||||||+|.||..-+..+.. .+.+ |.++|+++++++...++ -| .-...+
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g------------~~~~y~ 84 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------FG------------FEKATA 84 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------HT------------CSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------hC------------CCeecC
Confidence 79999999999866554432 1345 56789999887664321 11 112345
Q ss_pred Cccc-c--cCCCEEEEecccchhh
Q 009963 220 DYES-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 220 ~~~~-~--~~aDlVIeav~e~~~~ 240 (521)
|+++ + .+.|+|+.|+|.....
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~ 108 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHA 108 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CHHHHhcCCCCcEEEECCChHHHH
Confidence 6654 3 4689999999988754
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.14 Score=50.90 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcC-----CCCHHHHHhh-hccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKT-ISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g-----~~~~~~~~~~-~~~i~~~~ 219 (521)
.||||+|+|.||..++..+... +.+| .+.|++++.+....++ .| .+. ...... -..+....
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~----------~g~~~~~~~~-~~v~~~~~~~~~v~~ 71 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE----------LGIPVYAASE-EFIPRFEKEGFEVAG 71 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH----------TTCCEEESSG-GGHHHHHHHTCCCSC
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHh----------cCcccccccc-ccceeccCCceEEcC
Confidence 5899999999999999998876 4454 5568876655443211 11 000 000000 01122334
Q ss_pred Cccc-ccCCCEEEEecccchh
Q 009963 220 DYES-FKDVDMVIEAIIENVS 239 (521)
Q Consensus 220 ~~~~-~~~aDlVIeav~e~~~ 239 (521)
+++. +.++|+|++|.|....
T Consensus 72 d~~~l~~~vDvV~~aTp~~~h 92 (334)
T 2czc_A 72 TLNDLLEKVDIIVDATPGGIG 92 (334)
T ss_dssp BHHHHHTTCSEEEECCSTTHH
T ss_pred cHHHhccCCCEEEECCCcccc
Confidence 4443 4689999999997753
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.039 Score=54.86 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=94.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC---------CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS---------NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~---------G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (521)
+.||+|||+|.||++++..+.+. +++| .++|++.+..+. . ...+.+......+.+ .
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~-i-d~~~~~~~~~~~~~~------------~ 67 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD-F-SLVEALRMKRETGML------------R 67 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS-C-CHHHHHHHHHHHSSC------------S
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc-c-CHHHHHhhhccCccc------------c
Confidence 46999999999999999988775 4444 455776543221 0 000001100011111 0
Q ss_pred cccCccc-c--cCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCc--HHHHHHhhcCCCceeecccccccC
Q 009963 217 GVLDYES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH 290 (521)
Q Consensus 217 ~~~~~~~-~--~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~ 290 (521)
...|+++ + .+.|+||+|.|.+..--. .+.-+...+..+. +++.|...+. ..+|.+.... -|.+|+....
T Consensus 68 ~~~d~~~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~----~g~~~~~ea~ 142 (327)
T 3do5_A 68 DDAKAIEVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAER----NGVRLMYEAT 142 (327)
T ss_dssp BCCCHHHHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHH----TTCCEECGGG
T ss_pred CCCCHHHHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHh----hCCcEEEEEE
Confidence 0124443 2 468999999997753111 2222333344444 4555543222 1244333221 1333332222
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc
Q 009963 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFL-LVERGTDLYLIDRAITKFGMPMG 369 (521)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~-l~~~G~~~~~ID~a~~~~g~p~G 369 (521)
.+. + -..+..+++++. -++ .-.+. | |.| ...|..+. |-++|.+.+++-.-.+..||.-
T Consensus 143 v~~------g----~Pii~~l~~~l~-~~~-I~~I~---G-Iln----GT~nyilt~m~~~g~~f~~~l~~Aq~~GyaE- 201 (327)
T 3do5_A 143 VGG------A----MPVVKLAKRYLA-LCE-IESVK---G-IFN----GTCNYILSRMEEERLPYEHILKEAQELGYAE- 201 (327)
T ss_dssp SST------T----SCCHHHHHTTTT-TSC-EEEEE---E-ECC----HHHHHHHHHHHHHCCCHHHHHHHHHHTTSSC-
T ss_pred eee------c----CHHHHHHHHHhh-CCC-ccEEE---E-EEC----CCcCcchhhcCcCCcCHHHHHHHHHHcCCCC-
Confidence 210 1 012344555442 122 21111 1 112 22233322 3357888888766666667631
Q ss_pred HHHHhhhcCchHHHHHh
Q 009963 370 PFRLADLVGFGVAIATG 386 (521)
Q Consensus 370 Pf~~~D~~Gld~~~~~~ 386 (521)
|==..|.-|+|...++.
T Consensus 202 ~DP~~Dv~G~D~a~Kl~ 218 (327)
T 3do5_A 202 ADPSYDVEGIDAALKLV 218 (327)
T ss_dssp SSCHHHHTSHHHHHHHH
T ss_pred CCchhhcCChhHHHHHH
Confidence 11257999999988754
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.044 Score=51.78 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 51 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA 51 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778876 8999999999999999999999998876553
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.048 Score=53.01 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999997 9999999999999999999999986
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.082 Score=50.68 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=34.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 62 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA 62 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45677776 89999999999999999999999998776544
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.053 Score=51.47 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDE 50 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45667776 8999999999999999999999999888765543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.086 Score=50.39 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=34.2
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|++|| |+ +-+|.+||..|++.|..|+++|++++.+++..+.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~ 50 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE 50 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 56655 54 7799999999999999999999999988775543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.064 Score=51.64 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 56778876 89999999999999999999999988766543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.063 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.6
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+++|.|+|+ |.+|+.++..|++.|++|++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 468999997 9999999999999999999999985
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.059 Score=53.65 Aligned_cols=181 Identities=17% Similarity=0.153 Sum_probs=91.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC---------CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN---------YPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G---------~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
.||+|||+|.||++++..+.+.. ++| .++|++.++. ++ +. ....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~~ 57 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QELL 57 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGGE
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------cccc
Confidence 58999999999999999887763 444 5678875421 11 11 1123
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccCCCCeE
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~~~~lv 295 (521)
++|++++-+.|+|++|.+.....+.-+.+-|+. ...+++.|-..+ ...+|.+..... .. +|.. ..+
T Consensus 58 ~~d~~~ll~iDvVve~t~~~~~a~~~~~~AL~a---GKhVVtaNkkpla~~~~eL~~~A~~~----~~-~~Ea-~vg--- 125 (332)
T 2ejw_A 58 RAEPFDLLEADLVVEAMGGVEAPLRLVLPALEA---GIPLITANKALLAEAWESLRPFAEEG----LI-YHEA-SVM--- 125 (332)
T ss_dssp ESSCCCCTTCSEEEECCCCSHHHHHHHHHHHHT---TCCEEECCHHHHHHSHHHHHHHHHTT----CE-ECGG-GTT---
T ss_pred cCCHHHHhCCCEEEECCCCcHHHHHHHHHHHHc---CCeEEECCchhHHHHHHHHHHHHHhC----Ce-EEEE-Ecc---
Confidence 556655339999999998653222222223332 223444443211 122444333221 11 2221 111
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccHHHHh
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGM-PMGPFRLA 374 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~-p~GPf~~~ 374 (521)
.+ . | .++.++ .+. |-....+. | |.| ...|..+.-.++|.+.+++-.-.+..|| +.+| ..
T Consensus 126 ---~g--i-P-ii~~l~-~l~--~~~I~~I~---g-I~n----GT~nyil~~m~~g~~f~~~l~eAq~~GyaE~dP--~~ 185 (332)
T 2ejw_A 126 ---AG--T-P-ALSFLE-TLR--GSELLELH---G-ILN----GTTLYILQEMEKGRTYAEALLEAQRLGYAEADP--TL 185 (332)
T ss_dssp ---TT--S-S-SHHHHH-HHT--TSEEEEEE---E-ECC----HHHHHHHHHHHTTCCHHHHHHHHHHTTSSCSSC--HH
T ss_pred ---cC--C-H-HHHHHH-Hhc--CCCcceEE---E-EEe----cccccccCccccCCCHHHHHHHHHHCCCCCCCC--cc
Confidence 01 1 1 234444 221 22222121 1 222 2223333223478888777555556777 3566 78
Q ss_pred hhcCchHHHHHh
Q 009963 375 DLVGFGVAIATG 386 (521)
Q Consensus 375 D~~Gld~~~~~~ 386 (521)
|.-|.|...++.
T Consensus 186 Dv~G~d~a~Kl~ 197 (332)
T 2ejw_A 186 DVEGIDAAHKLT 197 (332)
T ss_dssp HHTTHHHHHHHH
T ss_pred ccCchhHHHHHH
Confidence 899999876653
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.093 Score=50.18 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=35.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus 9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESA 51 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45667765 8899999999999999999999999887765443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.056 Score=54.75 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=45.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
-.||+|||+| +|.--+..+.+. +++++ ++|+++++.++..+ +-| +...+|+++
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~----------~~g-------------v~~~~~~~~ 62 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAH----------AFG-------------IPLYTSPEQ 62 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHH----------HTT-------------CCEESSGGG
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH----------HhC-------------CCEECCHHH
Confidence 3599999999 798767666554 56655 78999987665321 112 223456654
Q ss_pred -ccCCCEEEEecccch
Q 009963 224 -FKDVDMVIEAIIENV 238 (521)
Q Consensus 224 -~~~aDlVIeav~e~~ 238 (521)
+++.|+|+.|+|...
T Consensus 63 l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 63 ITGMPDIACIVVRSTV 78 (372)
T ss_dssp CCSCCSEEEECCC--C
T ss_pred HhcCCCEEEEECCCcc
Confidence 578999999998764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.036 Score=58.12 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=31.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|++|.|||+|.-|-+-|..|+++|++|++++.+..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~ 35 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK 35 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence 57899999999999999999999999999998764
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.076 Score=50.54 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=34.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAA 48 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777776 89999999999999999999999998776543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.053 Score=51.77 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=33.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 46 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA 46 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 899999999999999999999999887654
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.057 Score=54.04 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|+++|++|+++|.+.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 479999999999999999999999999999764
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.038 Score=55.46 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=30.1
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus 7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 89999999999999999999999999998653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.094 Score=52.51 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=55.3
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 147 VKKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 147 ~~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+.||+|+| .|.+|..+...|..+. ++++.+....+.-.+ +... .+.+.. ...+... +.+++
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~----~~~~------~~~~~g------~~~~~~~-~~~~~ 66 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP----VHFV------HPNLRG------RTNLKFV-PPEKL 66 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB----GGGT------CGGGTT------TCCCBCB-CGGGC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch----hHHh------CchhcC------ccccccc-chhHh
Confidence 46999999 5999999999998765 376665443221100 0000 000000 0011111 12235
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
.++|+||+|+|.... .++... ++..++.++++++...
T Consensus 67 ~~vDvV~~a~g~~~s--~~~a~~---~~~aG~~VId~Sa~~r 103 (345)
T 2ozp_A 67 EPADILVLALPHGVF--AREFDR---YSALAPVLVDLSADFR 103 (345)
T ss_dssp CCCSEEEECCCTTHH--HHTHHH---HHTTCSEEEECSSTTS
T ss_pred cCCCEEEEcCCcHHH--HHHHHH---HHHCCCEEEEcCcccc
Confidence 789999999987643 333333 3355777888887653
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.057 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.+|.|||+|..|..+|..|++.|.+|+++|+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999875
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.043 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=31.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~ 180 (521)
|.+|.|||+|..|.+.|..|++ +|++|+++|.+.
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 3589999999999999999999 999999999864
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.11 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~ 68 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE 68 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56778876 899999999999999999999999987765443
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.025 Score=57.33 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=56.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.||.|||+ |..|.+-+..+..-|. .|+++|+++.. +|. .++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~-----------------~g~-----------------~~~~ 260 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS-----------------RGG-----------------PFDE 260 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT-----------------TCS-----------------CCTH
T ss_pred CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc-----------------cCC-----------------chhh
Confidence 48999999 9999999999999998 89999988631 121 0245
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhC-CCCceEEecCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTS 263 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS 263 (521)
+.++|+||.|+.-....-+-+-++..+.+ +++.+|++.+.
T Consensus 261 i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA~ 301 (394)
T 2qrj_A 261 IPQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSA 301 (394)
T ss_dssp HHHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETTC
T ss_pred HhhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEec
Confidence 77899999999731110001112233446 88898887653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.088 Score=50.34 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=35.0
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|++|| |++-+|.+||..|++.|.+|++.|++++.+++..+.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~ 52 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT 52 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 66666 558899999999999999999999999988776543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.53 E-value=0.036 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC--CCcEEEEeCCHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILS--NYPVILKEVNEKFLE 184 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~--G~~V~l~d~~~~~~~ 184 (521)
++|.|.|+ |.+|+.++..|++. |++|++.+++++..+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~ 40 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS 40 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence 46889987 99999999999998 999999999876543
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.23 Score=49.65 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=57.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC---CHHHHHHHHHHHHHHHHHHHHcCCCCHHH---HHhh-h--ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEV---NEKFLEAGIGRVRANLQSRVKKGKMTQEK---FEKT-I--SLL 215 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~-~--~~i 215 (521)
.+.||+|+|+|.+|.-+.+.+..+ .++|+.++- +.+.+....+ ..-..|.+...- -... . ..+
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~-------~ds~hg~~~~~v~~~~~~l~v~g~~i 88 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLK-------YDSVHGNFNGTVEVSGKDLCINGKVV 88 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHH-------CCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhc-------ccccCCCCCCcEEEeCCEEEECCeEE
Confidence 356999999999999999998876 577766542 3332222110 000112221100 0000 0 012
Q ss_pred ccc--cCcccc----cCCCEEEEecccchhhHHHHHHHHHhhCCCCc--eEEecCC
Q 009963 216 TGV--LDYESF----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC--ILASNTS 263 (521)
Q Consensus 216 ~~~--~~~~~~----~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~--il~sntS 263 (521)
... .+.+.+ .++|+||+|.|-.... +....++..++ +++|+.|
T Consensus 89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 89 KVFQAKDPAEIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp EEECCSCGGGCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCC
T ss_pred EEEecCChHHCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCC
Confidence 111 133333 5899999999866432 22345666777 8888876
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.1 Score=50.20 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=34.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+++.|.|+ |-+|..+|..|++.|++|++.+++.+.++...+
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 69 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAAR 69 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45666766 789999999999999999999999988766543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.18 Score=50.49 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=32.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|+|+|.|.+|...|..+...|.+|+++|++++.
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~ 210 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER 210 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence 68999999999999999999999999999999764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.36 Score=46.55 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=33.3
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
||+|| |+ +-+|.+||..|++.|.+|++.|++++.+++..
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~ 70 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI 70 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56666 54 67999999999999999999999999887654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=93.44 E-value=0.064 Score=50.82 Aligned_cols=39 Identities=26% Similarity=0.151 Sum_probs=33.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++..
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~ 49 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAI 49 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35666665 8899999999999999999999999877654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.36 Score=46.84 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|.|+ |.+|+.++..|++.|++|++.++++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG 37 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 68999995 99999999999999999999999843
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.055 Score=51.99 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=33.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++.
T Consensus 10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 48 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA 48 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 899999999999999999999999887654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.17 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.++|.|+|+ |.+|+.|+..|++.|++|+++++++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 368999998 9999999999999999999999976
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.11 Score=51.59 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=31.5
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.++|.|.|+ |.+|+.++..|++.|++|++++++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 368999996 99999999999999999999999654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.065 Score=50.64 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=33.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++.
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 44 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLRE 44 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 899999999999999999999999877654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.068 Score=52.18 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=33.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 67 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK 67 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35656665 89999999999999999999999998776543
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.18 Score=50.09 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=33.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
++|.|+|.|..|..++..|.+.|+ |+++|.|++.++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK 151 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence 589999999999999999999999 999999998876
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.48 Score=48.27 Aligned_cols=40 Identities=33% Similarity=0.371 Sum_probs=35.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. .|+..|.++++++.+.
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 479999999999998888888999 8999999999887653
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.052 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|+|+ |.+|+.++..|++.|++|++.+|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 58999997 99999999999999999999999874
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.072 Score=53.55 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=30.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.075 Score=52.77 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999874
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.067 Score=51.59 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++..
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEET 46 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35666665 8999999999999999999999999877654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.063 Score=53.71 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.29 Score=48.74 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eC--CHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILK-EV--NEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~--~~~~~~~ 185 (521)
.||||+|+|.+|..+++.+..+ +++|+.+ |. +.+.+..
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~ 45 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY 45 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 4999999999999999988764 5776544 53 5655443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.066 Score=50.87 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=33.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 44 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAA 44 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46778877 899999999999999999999999877654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.063 Score=51.70 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=33.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
+++|.|.|+|.+|+.++..|++.|++|++++++++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 468999999999999999999999999999998754
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.26 Score=50.98 Aligned_cols=64 Identities=27% Similarity=0.187 Sum_probs=43.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh----------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009963 148 KKVAILGGGLMGSGIATALIL----------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~----------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (521)
.||+|||+|.||++++..+.+ .+++ +.++|++++..+.. . ....
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~--------------~~~~ 65 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------A--------------GGLP 65 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------H--------------TTCC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------c--------------ccCc
Confidence 589999999999999887754 2333 45778888754321 0 0122
Q ss_pred cccCccc-c--cCCCEEEEeccc
Q 009963 217 GVLDYES-F--KDVDMVIEAIIE 236 (521)
Q Consensus 217 ~~~~~~~-~--~~aDlVIeav~e 236 (521)
.++|+++ + .+.|+|++|+|.
T Consensus 66 ~~~d~~ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 66 LTTNPFDVVDDPEIDIVVELIGG 88 (444)
T ss_dssp EESCTHHHHTCTTCCEEEECCCS
T ss_pred ccCCHHHHhcCCCCCEEEEcCCC
Confidence 3556644 3 368999999985
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.089 Score=52.78 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=31.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
...|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3689999999999999999999999999999863
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.08 Score=53.89 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 5899999999999999999999999999999764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.089 Score=53.23 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|...
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.078 Score=54.22 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.17 Score=50.62 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=29.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
|||.|.|+ |.+|+.++..|++.|+ +|+..|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 48999995 9999999999999999 99999983
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.23 Score=49.93 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=56.1
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|+| .|.+|..+...|.++. ++|+.+....+.-. .+...+..+ .|.+ ...+.... .+.++
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~----~~~~~~~~~--~~~v--------~~dl~~~~-~~~~~ 81 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ----SMESVFPHL--RAQK--------LPTLVSVK-DADFS 81 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS----CHHHHCGGG--TTSC--------CCCCBCGG-GCCGG
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC----CHHHhCchh--cCcc--------cccceecc-hhHhc
Confidence 5899999 6999999999998875 37766654322110 000000000 0100 00111111 22356
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
++|+||+|+|..... + ....+ ..++.++++++...
T Consensus 82 ~vDvVf~atp~~~s~--~---~a~~~-~aG~~VId~sa~~R 116 (359)
T 1xyg_A 82 TVDAVFCCLPHGTTQ--E---IIKEL-PTALKIVDLSADFR 116 (359)
T ss_dssp GCSEEEECCCTTTHH--H---HHHTS-CTTCEEEECSSTTT
T ss_pred CCCEEEEcCCchhHH--H---HHHHH-hCCCEEEECCcccc
Confidence 899999999876542 2 22334 66888889988654
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.076 Score=53.36 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
..|.|||+|..|.+.|..|+++|++|+++|.+
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999999987
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.043 Score=52.93 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=32.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~ 183 (521)
+||.|.|+ |.+|+.++..|.+. |++|++.+++++..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~ 38 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV 38 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH
Confidence 47999996 99999999999988 99999999998754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.16 Score=47.30 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=33.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 42 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVT 42 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45777776 78999999999999999999999998876543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.09 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 42 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG 42 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH
Confidence 46777776 899999999999999999999999876
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.16 Score=48.42 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.1
Q ss_pred eEEEEEeC-C-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ | -+|..+|..|++.|++|++.+++.+.++...
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 64 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETR 64 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 57888898 7 4999999999999999999999998876644
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.77 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=35.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|.+ |+..|.++++++.+.
T Consensus 181 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 221 (363)
T 3m6i_A 181 DPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK 221 (363)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 3699999999999999888889997 999999999887654
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.19 Score=53.06 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=32.8
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
.+||.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 468999995 999999999999999999999998754
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.08 Score=54.60 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=31.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|||+|..|...|..|+++|++|+++|..+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 589999999999999999999999999999875
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.12 Score=49.24 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=32.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF-LEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~ 186 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++. ++..
T Consensus 5 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 45 (260)
T 1x1t_A 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV 45 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHH
Confidence 35666665 899999999999999999999999876 5543
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.094 Score=53.42 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 579999999999999999999999999999874
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.58 Score=44.32 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+|.|-|+ +-+|.+||..|++.|.+|++.|++++.++.
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~ 41 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD 41 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3445554 789999999999999999999999887654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.048 Score=54.90 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=55.3
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcccccc-c
Q 009963 148 KKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGV-L 219 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~-~ 219 (521)
.||+|+| .|.+|..++..|..+. ++|+.+..++....+. ++.. .+.. .... ..+... .
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~-------~~~~--~~~~~~~~~~~~~-----~~~~~~~~ 74 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKK-------YKDA--CYWFQDRDIPENI-----KDMVVIPT 74 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB-------HHHH--SCCCCSSCCCHHH-----HTCBCEES
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccccccccc-------HHHh--cccccccccccCc-----eeeEEEeC
Confidence 6999999 7999999999988764 5776664332211100 0000 1111 0100 011111 1
Q ss_pred Ccccc-c-CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 220 DYESF-K-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 220 ~~~~~-~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+.+.+ + ++|+||+|+|... ..++...+ +..++.++++++..
T Consensus 75 ~~~~~~~~~~DvV~~atp~~~--~~~~a~~~---~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 75 DPKHEEFEDVDIVFSALPSDL--AKKFEPEF---AKEGKLIFSNASAY 117 (354)
T ss_dssp CTTSGGGTTCCEEEECCCHHH--HHHHHHHH---HHTTCEEEECCSTT
T ss_pred CHHHHhcCCCCEEEECCCchH--HHHHHHHH---HHCCCEEEECCchh
Confidence 33444 6 8999999998653 23333333 33567788888754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.27 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=31.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.++|.|.|+ |.+|+.++..|++.|++|++.++++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 61 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA 61 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 468999998 9999999999999999999999975
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.068 Score=53.17 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSN------YPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G------~~V~l~d~~~ 180 (521)
+.|.|||+|.+|.+.|..|+++| ++|+++|.+.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 47999999999999999999998 8999999875
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.3 Score=51.78 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.++..|+.+|+ +++++|.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~ 66 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 66 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999998 899999763
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.2 Score=47.05 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=35.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus 15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (247)
T 3i1j_A 15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSD 56 (247)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence 46667776 899999999999999999999999988776543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.1 Score=51.35 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=30.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCc-EEEEeCCHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYP-VILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~-V~l~d~~~~~ 182 (521)
+.||+|||+ |.||...+..+...+.+ |.++|++++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV 40 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 579999999 78999999999888875 4678988764
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.24 Score=46.65 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK 51 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 46777776 899999999999999999999999988776543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.1 Score=51.49 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=33.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.....
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 45 (341)
T 3enk_A 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREA 45 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHH
T ss_pred cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHH
Confidence 58999986 9999999999999999999999987654443
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.1 Score=53.26 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence 479999999999999999999999999999874
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=92.21 E-value=0.36 Score=48.09 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=43.0
Q ss_pred eEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|||+|.||.. .+..+... +++| .++|++ ..+...+ . ... ..+...+++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~----~----~~~------------~~~~~~~~~~~l 60 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAA----P----FKE------------KGVNFTADLNEL 60 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHH----H----HHT------------TTCEEESCTHHH
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHH----h----hCC------------CCCeEECCHHHH
Confidence 58999999999984 55555544 6776 478888 2111110 0 000 11233456654
Q ss_pred cc--CCCEEEEecccchh
Q 009963 224 FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~ 239 (521)
++ ++|+|+.|+|....
T Consensus 61 l~~~~~D~V~i~tp~~~h 78 (349)
T 3i23_A 61 LTDPEIELITICTPAHTH 78 (349)
T ss_dssp HSCTTCCEEEECSCGGGH
T ss_pred hcCCCCCEEEEeCCcHHH
Confidence 33 58999999998765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.051 Score=52.19 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.7
Q ss_pred EEEEEeC-ChhhHHHHHHHHhC--CCcEEEEeCCHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILS--NYPVILKEVNEKFLE 184 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~--G~~V~l~d~~~~~~~ 184 (521)
+|.|.|+ |.+|+.++..|++. |++|++.+++++..+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~ 39 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ 39 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh
Confidence 4789997 99999999999998 999999999876543
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=92.18 E-value=0.035 Score=59.86 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=32.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL 37 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~ 37 (521)
++++|+.++|+||+++||||+|++.+++++.+.+++.
T Consensus 480 ~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 480 KIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp TTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred HHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 4789999999999999999999988888887777653
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.11 Score=51.31 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=30.2
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCc-EEEEeCCHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYP-VILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~-V~l~d~~~~~ 182 (521)
+.||||||+ |.||...+..+...|.+ |.++|++++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV 40 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 579999999 78999999999888875 5677988764
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.16 Score=51.00 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=25.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--C--CcE-EEEeCC
Q 009963 147 VKKVAILGGGLMGSGIATALILS--N--YPV-ILKEVN 179 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G--~~V-~l~d~~ 179 (521)
..||+|||+|.||++++..+.+. | ++| .++|.+
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~ 41 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAE 41 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSS
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 46899999999999999999886 3 344 445543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.27 Score=46.33 Aligned_cols=40 Identities=25% Similarity=0.151 Sum_probs=34.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG 48 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46777776 89999999999999999999999998776543
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.085 Score=52.76 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=30.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+.+.|.|||+|.+|.+.|..|+ .|++|+++|.++
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 3468999999999999999999 699999999874
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.26 Score=46.43 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=34.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 53 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA 53 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56788876 8999999999999999999999998876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 521 | ||||
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 1e-37 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 4e-34 | |
| d1wdka1 | 124 | a.100.1.3 (A:497-620) Fatty oxidation complex alph | 5e-20 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 6e-20 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 2e-14 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 6e-13 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 2e-05 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 4e-04 | |
| d1wdka2 | 95 | a.100.1.3 (A:621-715) Fatty oxidation complex alph | 4e-04 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 0.001 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 0.001 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 0.002 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 0.003 |
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 135 bits (339), Expect = 1e-37
Identities = 70/184 (38%), Positives = 112/184 (60%)
Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
+ VK+ A+LG G+MG GIA P+++K++NE +E G+ L RV KG+MT
Sbjct: 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61
Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
K + ++ + L Y F +VD+V+EA++EN +KQ + A++E + ILASNTST
Sbjct: 62 PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121
Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
I ++L+ + + VG HFF+P H+MPL+E++R ++S + + KK+ K PIV
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
Query: 325 VGNC 328
V +C
Sbjct: 182 VNDC 185
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 4e-34
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63
Query: 203 -MTQEKFEKTISLLTGVLDYES-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 64 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183
Query: 321 TPIVVGNC 328
P+ +
Sbjct: 184 HPVSCKDT 191
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 83.7 bits (206), Expect = 5e-20
Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF 389
GF VNR+ FPY LV G D ID+ + KFG PMGP L D+VG
Sbjct: 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60
Query: 390 IENFPERTYKS--MIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEK 441
E FP+R I + E KR G+ KGFY Y+ +K V + +
Sbjct: 61 AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLE 114
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 88.2 bits (217), Expect = 6e-20
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
+ + K + E+A + VDAVV ++L + A + + A + K+
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLN 226
Query: 58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
+ + A + PN P+ I ++ G L+ EA F KL ++
Sbjct: 227 AIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSA 286
Query: 118 CKSLVHIFFAQRGTSKVPGVTD 139
L+ +F + K V D
Sbjct: 287 SNCLIGLFLNDQELKKKAKVYD 308
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 2e-14
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFG--MPMGPFRLADLVGFGVAIATGM 387
GF VNR+ PY A L ERG K G PMGPF L D VG
Sbjct: 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60
Query: 388 QFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLY 423
+ E E S + + + + G+ T +GFY Y
Sbjct: 61 GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 98
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 66.1 bits (161), Expect = 6e-13
Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 33/227 (14%)
Query: 125 FFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL--------SNYPVILK 176
F +K G ++ L G L+ ++ V++
Sbjct: 22 FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--------------- 221
E + K + K ++ + K ++ +
Sbjct: 78 EFDPKEVMEAHLSGNPE-SIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDR 136
Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKD- 278
E+ + D+VI + + + I P I+ + I + +D
Sbjct: 137 EAVEGADIVITWL-PKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195
Query: 279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
I H + + I S + + L +IGK + +
Sbjct: 196 NITSYHPGCVPEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM 241
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK 207
K A+LG G G A L L V+ +++ + ++ +Q R
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIK--------EIQDRGAIIAEGPGL 53
Query: 208 FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL----ASNTS 263
L + KD D+++ + I A++ Y ++ +
Sbjct: 54 AGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIILNPGATGG 111
Query: 264 TIDLNLIGERTYSKDRIVGAHFFSP 288
++ I + + +G
Sbjct: 112 ALEFRKILRENGAPEVTIGETSSML 136
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
K+ I+G G +GS A AL++ + + ++ V + F
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID----------VDKKRAEGDALDLIHGTPF 51
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCP- 253
+ ++ G DY K D+VI A N + ++I ++ KY P
Sbjct: 52 TRRANIYAG--DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD 109
Query: 254 PHCILASNTSTIDLNLIGERT-YSKDRIVG 282
I+ +N + + + ++ G
Sbjct: 110 SIVIVVTNPVDVLTYFFLKESGMDPRKVFG 139
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 37.5 bits (87), Expect = 4e-04
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDR---AITKFGMPM---GPFRLADLVGFGVAIATG 386
+N M P +E G + + G P+ G R D +G +A
Sbjct: 8 INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL- 66
Query: 387 MQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFY 421
+ + ++E + G + F+
Sbjct: 67 ADQYAELGALYHPT---AKLREMAKNG----QSFF 94
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/142 (11%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
+V ++G G +G+ AL+ ++L + NE + V
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASN 261
+ ++ + + + + + +N+++ + I + ++A+N
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDL--VDKNIAIFRSIVESVMASGFQGLFLVATN 124
Query: 262 TSTIDLNLIGERT-YSKDRIVG 282
I + + +R++G
Sbjct: 125 PVDILTYATWKFSGLPHERVIG 146
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 37.4 bits (86), Expect = 0.001
Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)
Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
+K+ I+G G +G+ +A LI + + NE ++A ANL++
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 203 MTQEKFEKT--ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL-A 259
+ G + + + S+ Q + +L++ ++
Sbjct: 62 NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121
Query: 260 SNTSTIDLNLIGERT-YSKDRIVG 282
SN + L T + +++G
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIG 145
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 36.7 bits (83), Expect = 0.002
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182
K+ ++G GL+G+ +A L + +I +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQST 35
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 36.7 bits (84), Expect = 0.003
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA 185
K + G G G+ +A L V + +NE+ +
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRL 45
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.95 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.95 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.7 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 99.68 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.66 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.63 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.62 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.61 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.53 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 99.31 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 99.27 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.25 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 99.25 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.25 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.24 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.21 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.21 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 99.2 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.18 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 99.17 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.14 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.08 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 99.05 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 99.04 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.03 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.95 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.92 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.88 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 98.87 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.86 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.82 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.8 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.73 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.71 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.71 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.7 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.67 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.64 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 98.61 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.56 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.54 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.53 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.47 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.46 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.31 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.28 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.27 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 98.23 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.21 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.18 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.12 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.11 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 98.06 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.04 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.03 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 98.02 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.98 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.96 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.89 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.83 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.79 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.77 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.73 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.69 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.68 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.65 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.62 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.62 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.48 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.41 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.37 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.28 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.23 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 97.21 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.05 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.02 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.0 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.0 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.94 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 96.91 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.87 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.85 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 96.81 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.81 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.8 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.79 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.75 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.74 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.74 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.64 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.62 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.57 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.53 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.49 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.45 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.44 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.35 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.31 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.26 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.19 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.13 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.12 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.11 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.08 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.03 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.03 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.99 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.98 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.97 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.94 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.84 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.84 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.84 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.74 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.71 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.63 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.61 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.6 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.59 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.56 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.55 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.55 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.43 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.42 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.42 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.36 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.36 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.32 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.31 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.17 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.17 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.16 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.12 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.08 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.0 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.98 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.97 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.95 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.91 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.9 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.85 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.84 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.73 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.66 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.64 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.63 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.62 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.61 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.61 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.59 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.56 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.55 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.54 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.54 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.54 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.48 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 94.44 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.38 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.37 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.35 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.34 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.32 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.25 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.24 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.2 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.16 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.07 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.06 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.04 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.97 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.93 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.84 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.8 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.76 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.71 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.58 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.57 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.55 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.53 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.51 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.46 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.45 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 93.42 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 93.42 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 93.33 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 93.26 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.18 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.11 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.1 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 93.05 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.93 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.77 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.77 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 92.76 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.76 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 92.75 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.75 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.66 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.61 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 92.6 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.54 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.53 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.42 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.35 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.18 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.09 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.06 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.99 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.92 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.9 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.9 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.89 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.85 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.83 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 91.82 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 91.81 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.78 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.66 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.57 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 91.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.44 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.32 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.25 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 91.21 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 91.15 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.9 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.89 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.85 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.82 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.81 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.78 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.63 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 90.6 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.3 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.05 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 90.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.95 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 89.85 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 89.58 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.37 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 89.17 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 89.17 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.07 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.91 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 88.84 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 88.76 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.75 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 88.66 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.6 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 88.51 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 88.25 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.21 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 88.21 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.2 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 88.2 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 87.95 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 87.82 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 87.66 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 87.63 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.62 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 87.61 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.36 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 87.36 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 87.35 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 87.21 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 87.04 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.49 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 86.39 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.35 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 86.31 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 86.26 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.14 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 85.94 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.87 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 85.83 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 85.83 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 85.67 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.48 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 85.47 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.34 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 85.06 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 85.06 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 85.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.95 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 84.65 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 84.22 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 84.08 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 84.01 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 83.95 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.85 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 83.8 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 83.77 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.74 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 83.64 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 83.4 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 83.12 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 82.31 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 82.01 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 81.93 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 81.86 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 81.85 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 81.72 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 81.6 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 81.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 81.52 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 81.44 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 81.2 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 81.06 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 80.53 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 80.19 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 80.14 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 80.06 |
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=5.8e-43 Score=323.80 Aligned_cols=185 Identities=38% Similarity=0.674 Sum_probs=180.9
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
++|+||+|||+|+||++||..++.+|++|++||++++.++++.+++.+.+.+.++++.+++.+.+..++++..+++++++
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF 81 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
.+||+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+|||||++++.|+
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~ 161 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS 161 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCcc
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVGNCT 329 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~d~~ 329 (521)
+++++.+.++++.+||.|++++|+|
T Consensus 162 ~~~~~~~~~~~~~lgk~pv~v~d~P 186 (186)
T d1wdka3 162 DLAVATTVAYAKKMGKNPIVVNDCP 186 (186)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccC
Confidence 9999999999999999999999876
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-42 Score=318.84 Aligned_cols=184 Identities=35% Similarity=0.567 Sum_probs=174.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHhhhcccccccC
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-----QEKFEKTISLLTGVLD 220 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~~ 220 (521)
.|+||+|||+|+||++||..++++|++|++||++++.++++.+++++.++..++++... .+..+..+.++..+++
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 58999999999999999999999999999999999999999999999999999988864 3445667789998888
Q ss_pred c-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEe
Q 009963 221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVR 299 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~ 299 (521)
+ +.+++||+|||||||++++|+++|+++++.+++++||+||||++++++++..+.+|+||+|+|||||++.+|+|||++
T Consensus 83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~ 162 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIK 162 (192)
T ss_dssp HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEC
T ss_pred hHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcC
Confidence 7 459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCcc
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~ 329 (521)
++.|++++++.+.+|++.+||.||+++|.|
T Consensus 163 g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P 192 (192)
T d1f0ya2 163 TPMTSQKTFESLVDFSKALGKHPVSCKDTP 192 (192)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence 999999999999999999999999999876
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.95 E-value=1.4e-28 Score=210.51 Aligned_cols=110 Identities=38% Similarity=0.646 Sum_probs=94.8
Q ss_pred cchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC--CccccHHHHHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPIMQ 407 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 407 (521)
|||+||++.++++||++|+++|++|++||.+++++|||||||+++|++|||+++++.+.+++.++++ ..+++++++|+
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv 80 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY 80 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998887754 34678999999
Q ss_pred HCCCCCccCCceeeeccCCCC----CCCChHHHHHH
Q 009963 408 EDKRAGETTRKGFYLYDERRK----ASPDPEVKKFI 439 (521)
Q Consensus 408 ~~G~~G~k~g~GfY~y~~~~~----~~~~~~~~~~~ 439 (521)
++|++|+|||+|||+|+++++ +..++++.+++
T Consensus 81 ~~g~lG~Ktg~GFY~y~~~~~~~~~~~~d~~~~~~~ 116 (124)
T d1wdka1 81 EAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVL 116 (124)
T ss_dssp HTTCCBTTTTBSSSEEC-------CEECCTHHHHHH
T ss_pred HcCCccccCCcEeeEcCCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999986443 23455554443
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-28 Score=200.39 Aligned_cols=95 Identities=36% Similarity=0.527 Sum_probs=89.5
Q ss_pred cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCC--CCccccHHHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE--RTYKSMIIPI 405 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~--~~~~~~~l~~ 405 (521)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|||+++++++.+.+..++ .+.|++++++
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~ 80 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK 80 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence 89999999999999999999997 9999999998 899999999999999999999999999888765 3457889999
Q ss_pred HHHCCCCCccCCceeeecc
Q 009963 406 MQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 406 ~~~~G~~G~k~g~GfY~y~ 424 (521)
|+++|++|+|||+|||+|+
T Consensus 81 mv~~g~lG~ksg~GfY~Y~ 99 (99)
T d1f0ya1 81 LVAENKFGKKTGEGFYKYK 99 (99)
T ss_dssp HHHTTCCBTTTTBSSSBCC
T ss_pred HHHcCCCcccCCCcccccC
Confidence 9999999999999999994
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=4.1e-18 Score=152.90 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=117.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
|||+|||+|.||++||..|.++|++|++||++++.++++. +.|.++ ...++.+.+++|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~~~~ 58 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA 58 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-----------Hhhccc-----------eeeeeccccccc
Confidence 5899999999999999999999999999999998877653 233221 134556789999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC------------CCCeE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (521)
|+||.|+|.+ ...++++++.+.+++++++++.+|.. ............++++.|++.++. ....+
T Consensus 59 DiIilavp~~--~~~~vl~~l~~~l~~~~iv~~~~s~~-~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~ 135 (165)
T d2f1ka2 59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDVASVK-TAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (165)
T ss_dssp SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEECCSCC-HHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred ccccccCcHh--hhhhhhhhhhhhcccccceeeccccc-hHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence 9999999854 46788999999999999997765543 222222222234789999985432 13345
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
.+++...++++.++.+.++++.+|.+++.|
T Consensus 136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 678888999999999999999999987764
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.77 E-value=2.1e-19 Score=145.00 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=77.6
Q ss_pred cchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 403 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l 403 (521)
.-|+||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|+++++++.+. ++++++.|+++|
T Consensus 5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L 83 (95)
T d1wdka2 5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKL 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHH
Confidence 34899999999999999999996 8999999999 999999 9999999999999999999874 588888899999
Q ss_pred HHHHHCCCCCccCCceee
Q 009963 404 PIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 404 ~~~~~~G~~G~k~g~GfY 421 (521)
++|+++ |+|||
T Consensus 84 ~~~~~~-------g~~Fy 94 (95)
T d1wdka2 84 REMAKN-------GQSFF 94 (95)
T ss_dssp HHHHHT-------TCCSC
T ss_pred HHHHHh-------CcCCC
Confidence 999866 58999
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=2.9e-16 Score=141.33 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=116.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
|+||+|||+|.||++||..|.++|+ +|+.||+|++.++.+. +.|.++ ......+....
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-----------~~~~~~---------~~~~~~~~~~~ 60 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID---------EGTTSIAKVED 60 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS---------EEESCGGGGGG
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-----------Hhhcch---------hhhhhhhhhhc
Confidence 4689999999999999999999996 7899999999888754 233321 11111122334
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccC------------
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------------ 290 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~------------ 290 (521)
.++|+||.|+|.+ .-.+++.++.+.+++++++++.+|+.. ...+...+ +.+|+|.||+...+
T Consensus 61 ~~~dlIila~p~~--~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~Lf 136 (171)
T d2g5ca2 61 FSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDNLY 136 (171)
T ss_dssp TCCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSSTT
T ss_pred cccccccccCCch--hhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHHhh
Confidence 5899999999965 345788899999999999998888643 23444443 45899999985321
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEE
Q 009963 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vv 324 (521)
....+-++++..++++.++.+.++++.+|..++.
T Consensus 137 ~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 137 EGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp TTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 1345668899999999999999999999987764
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.68 E-value=4.2e-17 Score=161.10 Aligned_cols=136 Identities=22% Similarity=0.296 Sum_probs=109.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhccc-CCC-CCchHHHHHHHHHHHHHHHh-C
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARKQ-A 77 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~a~~~~~~~-~ 77 (521)
|+++|++++|+||+++||||+|||+++|++.+.+||++++..+.++....... ... .+.......+...++.+.++ .
T Consensus 167 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
T d1wdka4 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG 246 (310)
T ss_dssp HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhhhcc
Confidence 57899999999999999999999999999999999999988643332222211 111 12222234555566666665 5
Q ss_pred CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCC
Q 009963 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPG 136 (521)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~ 136 (521)
++||||.+++++|+.+.+.+++++|+.|+++|.+|+.|+++++++++||++|+++|.++
T Consensus 247 ~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~ 305 (310)
T d1wdka4 247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAK 305 (310)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Confidence 68999999999999999999999999999999999999999999999999999888544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.66 E-value=7.8e-16 Score=135.92 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=117.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.+|+..|.++| ++|.++|+++++++...+ +. .+..+++.+++.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~-----------~~------------~~~~~~~~~~v~~ 57 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK-----------EL------------GVETSATLPELHS 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH-----------HT------------CCEEESSCCCCCT
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh-----------hc------------ccccccccccccc
Confidence 58999999999999999998887 899999999998776432 11 1334566778899
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEE-EeCCCCcH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQTSP 305 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lvei-v~~~~t~~ 305 (521)
||+||.||+. ..-.+++++ ..+.+.+++|..++++++.+.+.+....+++.++|+.|+.....+.. +.+...++
T Consensus 58 ~Div~lavkP--~~~~~v~~~---l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~ 132 (152)
T d1yqga2 58 DDVLILAVKP--QDMEAACKN---IRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (152)
T ss_dssp TSEEEECSCH--HHHHHHHTT---CCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred cceEEEecCH--HHHHHhHHH---HhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence 9999999963 222334333 33457889999999999999999877778999999999988776664 46667789
Q ss_pred HHHHHHHHHHHhcCCeEE
Q 009963 306 QVIVDLLDIGKKIKKTPI 323 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~v 323 (521)
+..+.+.+++..+|+...
T Consensus 133 ~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 133 TDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999997543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.63 E-value=2e-15 Score=133.23 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=115.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||++|+..|.++|++|+++++++++.++..+. .| +..+.+. +.+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~ 57 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLIDQ 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc----------cc-------------eeeechhhhhhhc
Confidence 589999999999999999999999999999999887653211 12 2233444 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCC-eEEEEeCCCCcH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTSP 305 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-lveiv~~~~t~~ 305 (521)
||+||.||+.+ . +.++.+.+.++.+++|.+++++++.+.+.+....+++..+|+.|+.... ...+..+..+++
T Consensus 58 ~dvIilavkp~--~----~~~vl~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~ 131 (152)
T d2ahra2 58 VDLVILGIKPQ--L----FETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131 (152)
T ss_dssp CSEEEECSCGG--G----HHHHHTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred cceeeeecchH--h----HHHHhhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence 99999999643 2 3344455678889999999999999999887777899999988877654 444567778899
Q ss_pred HHHHHHHHHHHhcCCeE
Q 009963 306 QVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~ 322 (521)
+..+.+.+++..+|+..
T Consensus 132 ~~~~~v~~l~~~~G~~~ 148 (152)
T d2ahra2 132 ELQARVRDLTDSFGSTF 148 (152)
T ss_dssp HHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 99999999999999753
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=1.4e-17 Score=156.69 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh--hhHHHHH------HHHhCCCcEEEEeCCHHHH-HHH
Q 009963 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL--MGSGIAT------ALILSNYPVILKEVNEKFL-EAG 186 (521)
Q Consensus 116 ~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~--mG~~iA~------~la~~G~~V~l~d~~~~~~-~~~ 186 (521)
.++..+++.|+.-....|..+.+. .....++.|+|+|+ ||.+|+. +|++.|+.|++.|.|++.. +..
T Consensus 13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~ 88 (242)
T d2b0ja2 13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH 88 (242)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence 456677777765555444433322 22356788999997 9999988 7899999999999997654 332
Q ss_pred HH--------HHHHHHHHHHHcCCCCHHHHHhhh----cccccccCc-ccccCCCEEEEecccchhhHHHHHHHHHhhCC
Q 009963 187 IG--------RVRANLQSRVKKGKMTQEKFEKTI----SLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCP 253 (521)
Q Consensus 187 ~~--------~i~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~ 253 (521)
.. .+++.+.+..+....++...-..+ .-++.++|. +.+++||+||+|+|+. +.++++++++.+.++
T Consensus 89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~ 167 (242)
T d2b0ja2 89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIP 167 (242)
T ss_dssp HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSC
T ss_pred hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCC
Confidence 22 222333333333321111000000 113344454 6799999999999965 567899999999999
Q ss_pred CCceEEecCCcCcH---HHHHHhhc-CCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 254 PHCILASNTSTIDL---NLIGERTY-SKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 254 ~~~il~sntS~l~i---~~ia~~~~-~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
+++|+++.+| ++. .++.+.+. ++.++++.||++++.......++.+ .++++.++.+.++++.+|+.++++
T Consensus 168 ~g~Iiid~ST-i~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 168 EGAIVTHACT-IPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp TTCEEEECSS-SCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCcEEEecCC-CcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 9999975544 443 35656564 3668999999998877665555543 578999999999999999998876
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=2.3e-15 Score=134.18 Aligned_cols=151 Identities=16% Similarity=0.222 Sum_probs=108.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||||||+|.||.+||..|+++|++|++||+++++++... +.+. ....+. +.+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-----------~~~~-------------~~~~~~~e~~~~ 56 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-----------AAGA-------------ETASTAKAIAEQ 56 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------EECSSHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-----------Hhhh-------------hhcccHHHHHhC
Confidence 5899999999999999999999999999999999877643 2221 122333 45789
Q ss_pred CCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeeccccc-cc--CCCCeEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFS-PA--HVMPLLEI 297 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~-P~--~~~~lvei 297 (521)
||+||.|||.+.+++..++. .+...+.+++++++.+ |.+++ +++..+. +..+|+..+... |. ...++.-+
T Consensus 57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~ 135 (161)
T d1vpda2 57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMS-SIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVM 135 (161)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEE
Confidence 99999999988877666553 4777888999887654 44443 3444442 233444443331 21 23456666
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.| +++.++.++++++.+|+..++++
T Consensus 136 ~gG---~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 136 VGG---DKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp EES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EcC---CHHHHHHHHHHHHHhcCceEECC
Confidence 666 68899999999999999888774
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.54 E-value=2.7e-14 Score=127.25 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=106.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
|+||+|||.|.||++||.+|+++||+|.+||+++++.+... +.+. ....+..+.+.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-----------~~~~------------~~~~~~~e~~~~ 57 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA------------SAARSARDAVQG 57 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC------------EECSSHHHHHTS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-----------hhhc------------cccchhhhhccc
Confidence 57999999999999999999999999999999998876643 2221 111222356889
Q ss_pred CCEEEEecccchhhHHHHHH---HHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeeccccc-cc--CCCCeEE
Q 009963 227 VDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFS-PA--HVMPLLE 296 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~---~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~-P~--~~~~lve 296 (521)
||+||.|||.+..++ .++. .+...+.++.|+++ +||.+++ +++..+. +..+|+..+... |. ....+.-
T Consensus 58 ~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~ 135 (162)
T d3cuma2 58 ADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF 135 (162)
T ss_dssp CSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred cCeeeecccchhhHH-HHHhccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence 999999999887654 4443 36667888888764 4455444 4444442 233455443332 21 2356666
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
++.| ++++++.++++++.+|+..++++
T Consensus 136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 136 MVGG---DAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence 6776 68899999999999999888764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=3e-14 Score=125.45 Aligned_cols=138 Identities=20% Similarity=0.203 Sum_probs=105.7
Q ss_pred ccceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 145 RRVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 145 ~~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..++||+||| +|.||++||..|.++||+|.+||++++.... ..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------~~ 50 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------SI 50 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------HH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------hh
Confidence 4578999999 8999999999999999999999998753221 12
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhhcCCCceeecccccccC----CCCeEEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH----VMPLLEI 297 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~~~~~r~ig~hf~~P~~----~~~lvei 297 (521)
+.++|+++.++|... -..++.++.+.+++++++++.+|+.+. ..+.+. .+.+|++.||+..+. ....+.+
T Consensus 51 ~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~v~ 126 (152)
T d2pv7a2 51 LANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVVVR 126 (152)
T ss_dssp HTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEEEE
T ss_pred hhhccccccccchhh--heeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEEEE
Confidence 567899999998664 457888899999999999877765432 334333 356899999986443 2355666
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEE
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vv 324 (521)
+++ .+++.++.+.++++.+|..++.
T Consensus 127 ~~g--~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 127 CDG--RFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred ecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence 665 3566789999999999988764
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.2e-12 Score=125.22 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=85.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|++|+++||||+|||++++.+++.++|++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~--~~---------------------------------- 205 (258)
T d2fw2a1 162 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASY--NA---------------------------------- 205 (258)
T ss_dssp HHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred hhccCcccccccccccccccccccccccccccchhhhhhhhh--hH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~ 257 (258)
T d2fw2a1 206 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 1444678889888888899999999999999999999999999999988764
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=99.27 E-value=2.4e-12 Score=124.00 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=88.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||+.++|++|+++||||+|||++++.+.|.++|++++.. |+
T Consensus 164 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 207 (269)
T d1nzya_ 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAA--PT---------------------------------- 207 (269)
T ss_dssp HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHS--CH----------------------------------
T ss_pred ccccccccchhHHHHcCCccccccccccccchhhhhhhhhhh--hH----------------------------------
Confidence 468999999999999999999999999999999999999875 32
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~ 135 (521)
.+...+|+.++++...+++++++.|.+.+..++.++++++++.+|++||++++.+
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~ 262 (269)
T d1nzya_ 208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ 262 (269)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence 1444688999999889999999999999999999999999999999999887643
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.25 E-value=1.1e-11 Score=111.38 Aligned_cols=146 Identities=11% Similarity=0.079 Sum_probs=98.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc---C-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---D-YES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~-~~~ 223 (521)
.+|+|||+|.||.+||..|+++||+|++||+++++++...+ .+... ....... + .+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~--------~~~~~a~~~~~~~~~ 63 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG--------TKVLGAHSLEEMVSK 63 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT--------SSCEECSSHHHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hcccc--------ccccchhhhhhhhhh
Confidence 47999999999999999999999999999999998876432 22100 0000111 1 245
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------CC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VM 292 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~~ 292 (521)
+.++|.+|.+++....+. +++..+.+.++++.+++..+ |.++. +++..+.. .|.+|. .|+. ..
T Consensus 64 ~~~~~~ii~~~~~~~~v~-~v~~~l~~~~~~g~iiid~s-T~~~~~~~~~~~~~~~----~g~~~ldapvsGg~~~A~~G 137 (176)
T d2pgda2 64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGG-NSEYRDTMRRCRDLKD----KGILFVGSGVSGGEDGARYG 137 (176)
T ss_dssp BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHH----TTCEEEEEEEESHHHHHHHC
T ss_pred hcccceEEEecCchHHHH-HHHHHHHhccccCcEEEecC-cchhHHHHHHHHHHHh----cCCceeccccccCcccccCC
Confidence 788999999999887654 56788888899999887544 44443 33333321 244444 2322 12
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeE
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~ 322 (521)
. .-++.| ++++++.++++++.++.+.
T Consensus 138 ~-~~~~gG---~~~~~~~~~~il~~~~~kv 163 (176)
T d2pgda2 138 P-SLMPGG---NKEAWPHIKAIFQGIAAKV 163 (176)
T ss_dssp C-EEEEEE---CTTTHHHHHHHHHHHSCBC
T ss_pred c-EEEcCC---CHHHHHHHHHHHHHHhccc
Confidence 3 334455 5677889999999998764
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=4.6e-12 Score=120.79 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=86.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|++|+++||||+|+|++++.+.+.++++.+...+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~-~----------------------------------- 200 (253)
T d1uiya_ 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-P----------------------------------- 200 (253)
T ss_dssp HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccc-h-----------------------------------
Confidence 5789999999999999999999999999999999999988752 1
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+++
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~ 252 (253)
T d1uiya_ 201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 2455789999999999999999999999999999999999999999988653
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.25 E-value=1.2e-12 Score=104.76 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccc-CccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 462 LTLRLLWAWVFHLTGEESCSGLTLLDR-STFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 462 ~~~~~i~~rll~~~vnea~~~l~~~~~-~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
++++||++|++++|+|||++||+++++ ++.||| .+++.+.|||+ |||+|+|.+|-.
T Consensus 2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD--~~~~~g~GfP~~~gGp~~~~D~~G~~ 61 (95)
T d1wdka2 2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEAD--MGLVYGIGFPLFRGGALRYIDSIGVA 61 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHH--HHHHHHTCCCGGGCCHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHccCChhhCcHHHHHHHHCHH
Confidence 789999999999999999999999986 799999 99999999999 999999999853
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.24 E-value=4.3e-11 Score=107.62 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=101.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC----ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD----YES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~ 223 (521)
+||||||+|.||.+||.+|+++||+|++||+++++.+...+ .+.... .........+ ...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~ 65 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAP-----FAGNLKAFETMEAFAAS 65 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTST-----TGGGEEECSCHHHHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCccc-----cccchhhhhhhhHHHHh
Confidence 58999999999999999999999999999999998876532 222110 0011111111 134
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhc-CCCceeeccccccc---CCCCeEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA---HVMPLLE 296 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~-~~~r~ig~hf~~P~---~~~~lve 296 (521)
+..++.++.+++....+. .++..+...+.++.+++.. |+.++. +++..+. ...+++....+..+ ... ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~-st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g-~~~ 142 (178)
T d1pgja2 66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDT-GNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKG-PAF 142 (178)
T ss_dssp BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEEC-CCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHC-CEE
T ss_pred cccceEEEEeecCcchhh-hhhhhhhhhccccceeccc-CccchhHHHHHHHHHhhcceeEecccccCCcchhcCC-cEE
Confidence 678899999998876654 4566777788888887654 444433 4444442 33455554333221 112 233
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEE
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPI 323 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v 323 (521)
++.| ++++++.+.++++.+++.+.
T Consensus 143 mvgG---~~~~~~~v~pil~~~~~~~~ 166 (178)
T d1pgja2 143 FPGG---TLSVWEEIRPIVEAAAAKAD 166 (178)
T ss_dssp EEEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred EeeC---CHHHHHHHHHHHHHHhcccc
Confidence 5555 68999999999999998765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.21 E-value=1.6e-11 Score=107.66 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=91.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||++||..|+++|++|+++|++++........ ..+ + ..+..+.+.+|
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~-------------~-~~~~~e~~~~~ 57 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------TVG-------------V-TETSEEDVYSC 57 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------HHT-------------C-EECCHHHHHTS
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------ccc-------------c-cccHHHHHhhc
Confidence 589999999999999999999999999999887665442210 001 1 11123557899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecC--CcCcHHHHHHhhcCCCceeecccccccC--CCCeEEEEeCCCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQT 303 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~l~i~~ia~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t 303 (521)
|+||.|||.+..+ ++..++.... +.++++.+ |.-...++++.+.. .+++..+.+.++. .....-++.|+.
T Consensus 58 diIi~~v~~~~~~--~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~~- 131 (152)
T d1i36a2 58 PVVISAVTPGVAL--GAARRAGRHV--RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGRD- 131 (152)
T ss_dssp SEEEECSCGGGHH--HHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEESTT-
T ss_pred CeEEEEecCchHH--HHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECCC-
Confidence 9999999987543 4445555544 33443322 22234566666543 3566666554432 122233556643
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecCcc
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGNCT 329 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d~~ 329 (521)
.+.++ .+..+|....++++.|
T Consensus 132 -~~~~~----~l~~~g~~i~~~G~~P 152 (152)
T d1i36a2 132 -AEEFM----KLNRYGLNIEVRGREP 152 (152)
T ss_dssp -HHHHH----GGGGGTCEEEECSSST
T ss_pred -HHHHH----HHHHcCCeeeEcCCCC
Confidence 33333 3678898888887654
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=4.9e-11 Score=104.92 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=100.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||.+||.+|+++|+.| +|+++.++.....+. .+ ......+.+.++|
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~----------~~--------------~~~~~~~~~~~~~ 56 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE----------FG--------------SEAVPLERVAEAR 56 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH----------HC--------------CEECCGGGGGGCS
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH----------cC--------------Cccccccccccee
Confidence 7999999999999999999998865 677777665543211 11 1123456678999
Q ss_pred EEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------CCCeEEE
Q 009963 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VMPLLEI 297 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~~~lvei 297 (521)
++|.++|.+.++. .+...+...+.++.+++. +||.+++ +++..+.. .|.+|. .|+. ...|.-+
T Consensus 57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid-~sT~~p~~~~~~~~~~~~----~gi~~ldapVsGg~~~A~~G~L~~~ 130 (156)
T d2cvza2 57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLRE----KGVTYLDAPVSGGTSGAEAGTLTVM 130 (156)
T ss_dssp EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEE
T ss_pred EEEecccchhhhh-hhhccccccccccccccc-cccCCHHHHHHHHHHHHH----cCCeEEeccccCchhhhccCCEEEE
Confidence 9999999887654 456777778888888764 4555554 45454432 255555 3443 3567777
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.| ++++++.++.++ .+++.+++++
T Consensus 131 vgG---~~~~~~~~~p~L-~~~~~v~~~G 155 (156)
T d2cvza2 131 LGG---PEEAVERVRPFL-AYAKKVVHVG 155 (156)
T ss_dssp EES---CHHHHHHHGGGC-TTEEEEEEEE
T ss_pred EeC---CHHHHHHHHHHH-HhcCcCEEeC
Confidence 777 789999999998 4888888875
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.2e-11 Score=118.25 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=87.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|++++++.+.+.+++.+++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~-~----------------------------------- 204 (260)
T d1mj3a_ 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-K----------------------------------- 204 (260)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred HHHcCcccCchhhccCCCceeeecccccccccccccccccchh-h-----------------------------------
Confidence 4789999999999999999999999999999999999988752 1
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.|...+|++++.....+++++++.|.+.|..++.|+++++++++|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~ 256 (260)
T d1mj3a_ 205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN 256 (260)
T ss_dssp HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 2555789999999999999999999999999999999999999999988764
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7.2e-12 Score=120.38 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=82.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|++|+++||||+|||++++.+++.++|.+++..-.. .++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~--------------------------------~~p 210 (266)
T d1hzda_ 163 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLP--------------------------------QGP 210 (266)
T ss_dssp HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTT--------------------------------SCH
T ss_pred hhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhccc--------------------------------CCh
Confidence 478999999999999999999999988777777766555442100 011
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.|...+|+.++++...+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~ 262 (266)
T d1hzda_ 211 VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR 262 (266)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 2555789999999989999999999999999999999999999999988764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=5.1e-12 Score=110.89 Aligned_cols=142 Identities=8% Similarity=-0.055 Sum_probs=90.8
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (521)
|+|||+|.||.+|+..|.+.++.+.+|+|+++++++..+ .+. . ...+..+.++.||+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~~-----------~-~~~~~~~~~~~~Di 58 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VYG-----------G-KAATLEKHPELNGV 58 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HTC-----------C-CCCSSCCCCC---C
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------ccc-----------c-cccchhhhhccCcE
Confidence 799999999999999886655555799999999877432 221 1 12334466899999
Q ss_pred EEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC--------CCCeEEEEeCC
Q 009963 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPLLEIVRTN 301 (521)
Q Consensus 230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~--------~~~lveiv~~~ 301 (521)
||.|||.+. + .+++.++ ..++.++++.+++.+++.+. +....+.||..+.. ...++-.+.+
T Consensus 59 Vil~v~d~~-i-~~v~~~l---~~~~~ivi~~s~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 127 (153)
T d2i76a2 59 VFVIVPDRY-I-KTVANHL---NLGDAVLVHCSGFLSSEIFK-----KSGRASIHPNFSFSSLEKALEMKDQIVFGLEG- 127 (153)
T ss_dssp EEECSCTTT-H-HHHHTTT---CCSSCCEEECCSSSCGGGGC-----SSSEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred EEEeccchh-h-hHHHhhh---cccceeeeecccchhhhhhh-----hhccccceeeeecccccchhhhccCcEEEEeC-
Confidence 999999753 2 3444433 24788888877777765543 22345777753211 1122333443
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+++.++.++++++.+|..++++.+
T Consensus 128 --d~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 128 --DERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence 567889999999999998888763
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=1.8e-11 Score=117.26 Aligned_cols=95 Identities=17% Similarity=0.094 Sum_probs=81.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 167 l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 210 (263)
T d1wz8a1 167 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQG--PK---------------------------------- 210 (263)
T ss_dssp HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred hcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhcc--HH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++...... .+.++.|.+.+..++.|+|+++++++|++||+++
T Consensus 211 ~al~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~ 261 (263)
T d1wz8a1 211 EALHHTKHALNHWYRSF-LPHFELSLALEFLGFSGKELEEGLKALKEKRPPE 261 (263)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCC
Confidence 14446788888776644 4568999999999999999999999999998764
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=2.4e-11 Score=117.26 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCch-HHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQ-LVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~-l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+++|++++|+||+++||||+|+|+++ +.+++.+++.+++..+ |
T Consensus 172 ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~-p---------------------------------- 216 (275)
T d1dcia_ 172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P---------------------------------- 216 (275)
T ss_dssp HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred ccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc-H----------------------------------
Confidence 467899999999999999999998765 6677788999888752 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|+.++.+...+++++++.|.+.+..++.|+++++++.+|++||+++-
T Consensus 217 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~ 269 (275)
T d1dcia_ 217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKS 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 14557888899988899999999999999999999999999999999887653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.08 E-value=7.8e-11 Score=106.01 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=72.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~-~~~ 224 (521)
+||+|||+|.||.++|..|+++|++|++||++++.++...+ .+.... ............+++. +.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD-----------RGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 68999999999999999999999999999999988776432 111000 0000000112223444 558
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
++||+||.|+|... ...++.++.+++.+++++..
T Consensus 71 ~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 71 KDADVILIVVPAIH--HASIAANIASYISEGQLIIL 104 (184)
T ss_dssp TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEE
T ss_pred cCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEE
Confidence 99999999998774 57899999999999987754
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.3e-10 Score=110.95 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=79.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|+.++|+||+++||||+||+++++.+.|.++|++++..+ |
T Consensus 160 ~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-~----------------------------------- 203 (261)
T d1ef8a_ 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred ccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcC-c-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGP--RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~--~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.|...+|+.++....... ...++.+...+..++.|+|+++++.+|++||+++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~ 257 (261)
T d1ef8a_ 204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN 257 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCc
Confidence 144467888877665544 4445556677888999999999999999988765
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=1.3e-10 Score=113.23 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=79.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.+++++++.. |+
T Consensus 195 llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~--~~---------------------------------- 238 (297)
T d1q52a_ 195 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK--SP---------------------------------- 238 (297)
T ss_dssp HHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred ccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.|...+|++++... .++.+....|.+.+..++.|+++++++.+|++||+++-
T Consensus 239 ~a~~~~K~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f 290 (297)
T d1q52a_ 239 QAQRMLKFAFNLLD-DGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDW 290 (297)
T ss_dssp HHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence 13345677776644 44555566788899999999999999999999887643
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.03 E-value=1.2e-10 Score=105.74 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=75.9
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (521)
..|+||+|||+|.||.++|..|+++|++|++|+++++.++...+. ......-+. -....++..+++++ .
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~--------~~n~~yl~~--~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLKG--VQLASNITFTSDVEKA 74 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH--------TBCTTTSTT--CBCCTTEEEESCHHHH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc--------ccccccccc--cccccccccchhhhhc
Confidence 357899999999999999999999999999999999887764321 000000000 01234677788874 4
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhh-----CCCCceEEecCCcC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKY-----CPPHCILASNTSTI 265 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~-----~~~~~il~sntS~l 265 (521)
+++||+||.|||.. .-+.+++++.+. ..++.++++.|-++
T Consensus 75 ~~~ad~iiiavPs~--~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 75 YNGAEIILFVIPTQ--FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp HTTCSCEEECSCHH--HHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred cCCCCEEEEcCcHH--HHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 89999999999865 456777776543 34566666665554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.95 E-value=3.7e-10 Score=101.62 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=69.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~ 223 (521)
|||+|||+|.||.++|..|+++|++|.+|.++ ++.++... .++..+. ........+..+++. +.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~------------~~~~~~~~~~~~~~~~i~~~~~~~~~ 68 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS------------AGREHPRLGVKLNGVEIFWPEQLEKC 68 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH------------TTCCBTTTTBCCCSEEEECGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh------------hhhhhhhhcchhccccccccccHHHH
Confidence 69999999999999999999999999999884 44333321 1111000 000001234455665 45
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
++++|+||.|||.. ..+.+++++.+++++..++..
T Consensus 69 ~~~ad~Ii~avps~--~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 69 LENAEVVLLGVSTD--GVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp HTTCSEEEECSCGG--GHHHHHHHHTTTCCSCEEEEC
T ss_pred Hhccchhhcccchh--hhHHHHHhhccccccceeccc
Confidence 89999999999965 567899999999988766654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.92 E-value=2.8e-09 Score=92.06 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=76.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
-+||+|||+|.+|+++|..++..|. +|+++|++++.++.-...+.+. .... ......+.+++++
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~-----------~~~~~~~~d~~~~ 70 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFT-----------APKKIYSGEYSDC 70 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGS-----------CCCEEEECCGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---cccc-----------CCceEeeccHHHh
Confidence 4699999999999999999999884 8999999998654322121111 0000 1123446688999
Q ss_pred cCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcC-CCceeec
Q 009963 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 225 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~-~~r~ig~ 283 (521)
++||+||.++.. +..+.+++..++.+.++ +++++..|... ....+...... +.|++|+
T Consensus 71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p-~aivivvtNPvdv~t~~~~k~sg~p~~rViG~ 145 (146)
T d1ez4a1 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 (146)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence 999999998621 12244566667777654 55544333222 22233344443 4678875
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.91 E-value=1.5e-08 Score=92.51 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
|||+|||+|.+|..+|.+|+++|++|++||.|++.++...+. ....+.... ...++..++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~------------~~~~~~~~~ 68 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR------------QTGRLSGTT 68 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh------------cccccccCC
Confidence 689999999999999999999999999999999988764321 111111111 123456677
Q ss_pred Cc-ccccCCCEEEEecccch--------hhHHHHHHHHHh---hCCCCceEEecCCcCcHH---HHHH-hhc-CCCceee
Q 009963 220 DY-ESFKDVDMVIEAIIENV--------SLKQQIFADLEK---YCPPHCILASNTSTIDLN---LIGE-RTY-SKDRIVG 282 (521)
Q Consensus 220 ~~-~~~~~aDlVIeav~e~~--------~~k~~v~~~l~~---~~~~~~il~sntS~l~i~---~ia~-~~~-~~~r~ig 282 (521)
++ +.+.+||+++.|||... ..-..+...+.. ...++.+++. .||+++. .+.. .+. ......+
T Consensus 69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii-~STv~pGtt~~~~~~~l~~~~~~~~~ 147 (202)
T d1mv8a2 69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAG 147 (202)
T ss_dssp CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceee-ccccCCcchhhhhhhhhhcccccccc
Confidence 76 45899999999998632 222344444433 3446666543 4555442 2111 110 0011112
Q ss_pred ccc---ccccCCCC----------eEEEEeCCCCcHHHHHHHHHHHHhcCCeEE
Q 009963 283 AHF---FSPAHVMP----------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323 (521)
Q Consensus 283 ~hf---~~P~~~~~----------lveiv~~~~t~~e~~~~~~~l~~~lGk~~v 323 (521)
..| ++|-...+ -.-|+.+ .+++..+.+.++++.+....+
T Consensus 148 ~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii 199 (202)
T d1mv8a2 148 VDFGVGTNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPII 199 (202)
T ss_dssp TTBEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEE
T ss_pred ccccchhhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeE
Confidence 111 23432211 1123344 367888999999998876544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.88 E-value=3.3e-09 Score=91.92 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=77.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++..|+ ++.++|++++.++.-...+.+. .-.. .......+.++++++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~------~~~~-------~~~~~~~~~d~~~l~ 73 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG------KVFA-------PKPVDIWHGDYDDCR 73 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH------TTSS-------SSCCEEEECCGGGTT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC------cccc-------CCCeEEEECCHHHhc
Confidence 599999999999999999999886 7999999998765422222110 0000 011223456789999
Q ss_pred CCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCc-HHH-HHHhhcC-CCceeec
Q 009963 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID-LNL-IGERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-i~~-ia~~~~~-~~r~ig~ 283 (521)
+||+||.+.- .+..+.+++..++.+++++ ++++..|.... ++. +...... |.|++|+
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLVATNPVDILTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence 9999998762 2234556667778888754 55443333222 122 2333333 4788875
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=8.9e-10 Score=104.08 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=74.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++++.+||++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 205 (245)
T d2f6qa1 162 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKL--PP---------------------------------- 205 (245)
T ss_dssp HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTS--CH----------------------------------
T ss_pred hcccccccccccccccccccccCCcchHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~ 120 (521)
.+...+|++++.....++++.++.|.+.|..++.|+|++|
T Consensus 206 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n 245 (245)
T d2f6qa1 206 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245 (245)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence 1445688999988888899999999999999999999975
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.86 E-value=4e-09 Score=90.79 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=77.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.++|..++..|. ++.++|++++.++.....+..... ......++..++++++++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~------------~~~~~~~i~~~~~~~~~~ 68 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc------------hhcccceEEecCCHHHhc
Confidence 589999999999999999999985 899999999876543222211110 011123455567889999
Q ss_pred CCCEEEEec--ccc------------hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH----HhhcC-CCceeec
Q 009963 226 DVDMVIEAI--IEN------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----ERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav--~e~------------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia----~~~~~-~~r~ig~ 283 (521)
+||+||.+. |.. ..+.+++.+.+.+++ |++++...|. |++.+. ..... +.|++|+
T Consensus 69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtN--Pvd~~~~~~~~~sg~p~~rviG~ 142 (142)
T d1guza1 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGM 142 (142)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecC--ChHHHHHHHHHHhCCChHhEeeC
Confidence 999999986 222 224455666777776 4555543332 443332 22333 4678875
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.82 E-value=9.2e-09 Score=88.32 Aligned_cols=123 Identities=15% Similarity=0.256 Sum_probs=77.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++.+|. ++.++|++++.++.-...+.+... ..+ ...++..+.++++++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~---~~~---------~~~~i~~~~d~~~~~ 68 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GID---------KYPKIVGGADYSLLK 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH---TTT---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc---ccC---------CCCccccCCCHHHhc
Confidence 599999999999999999998886 799999999876532222221110 000 112456677899999
Q ss_pred CCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HH-HHHhhcC-CCceeec
Q 009963 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NL-IGERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~-ia~~~~~-~~r~ig~ 283 (521)
+||+||.+.. .+..+-+++..++.+++ |+++++..|...++ +. +...... |.|++|+
T Consensus 69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence 9999998862 12223444555566665 56676655543322 22 2233333 5678875
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.80 E-value=1.1e-08 Score=87.79 Aligned_cols=122 Identities=24% Similarity=0.352 Sum_probs=78.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|||+|.+|+.+|..++..|+ ++.++|++++.++.-...+.+. .... ....+..+.++++++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a------~~~~-------~~~~i~~~~~~~~~~ 68 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG------SSFY-------PTVSIDGSDDPEICR 68 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT------GGGS-------TTCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc------cccC-------CCceeecCCCHHHhh
Confidence 589999999999999999999987 8999999998764322222211 0000 012445567789999
Q ss_pred CCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHH-HHhhcC-CCceeec
Q 009963 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLI-GERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~i-a~~~~~-~~r~ig~ 283 (521)
+||+||.+. ..+..+.+++..++.++++. ++++..|...++ +.+ ...... +.|++|+
T Consensus 69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~ 142 (143)
T d1llda1 69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPN-AIYMLITNPVDIATHVAQKLTGLPENQIFGS 142 (143)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence 999999885 23444566677778887654 454433332221 222 233333 5688875
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.2e-09 Score=88.13 Aligned_cols=50 Identities=10% Similarity=-0.088 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
|++|++.+++|||++|++++++++++|| ..++.+.|+|+|||+++|.+|=
T Consensus 3 i~NRil~~~~~ea~~ll~eG~a~~~~iD--~~~~~~~G~p~Gpf~~~D~vGl 52 (99)
T d1f0ya1 3 IVNRLLVPYLMEAIRLYERGDASKEDID--TAMKLGAGYPMGPFELLDYVGL 52 (99)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSCHHHHH--HHHHHHHCCSSCHHHHHHHHCH
T ss_pred ehHHHHHHHHHHHHHHHHHcCCCHHHHH--HHhhcccCCCCchHHHHHhhcH
Confidence 5799999999999999999999999999 8888889999999999999983
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=3.8e-08 Score=84.23 Aligned_cols=120 Identities=24% Similarity=0.338 Sum_probs=74.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-cccccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~ 224 (521)
+||+|||+|.+|.++|..++.++. ++.++|++++.++.-...+... ...... ...+.+++++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~---------------~~~~~~~~~~~~~~~~~ 65 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG---------------TPFTRRANIYAGDYADL 65 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH---------------GGGSCCCEEEECCGGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc---------------ccccccccccCCcHHHh
Confidence 599999999999999999988875 8999999998765422222111 001111 1234578899
Q ss_pred cCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHH-HHhhcC-CCceeec
Q 009963 225 KDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLI-GERTYS-KDRIVGA 283 (521)
Q Consensus 225 ~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~i-a~~~~~-~~r~ig~ 283 (521)
++||+||.+. ..+..+-+++...+.++++ ++++...|....+ +.+ ...... |.|++|.
T Consensus 66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-~aivivvtNPvd~~t~~~~k~sg~p~~rViGt 140 (140)
T d1a5za1 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140 (140)
T ss_dssp TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence 9999999986 1223345556667777765 5555433332221 222 223332 4677763
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.71 E-value=3.5e-08 Score=86.11 Aligned_cols=121 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++..|+ ++.++|++++.+..-...+.+. ..-.+ ...+....++++++
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~----------~~~~~~~~d~~~~~ 87 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQ----------TPKIVADKDYSVTA 87 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCC----------CSEEEECSSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccC----------CCeEEeccchhhcc
Confidence 699999999999999999999997 8999999988764322222110 00000 12234456789999
Q ss_pred CCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHH-HHhhcC-CCceee
Q 009963 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLI-GERTYS-KDRIVG 282 (521)
Q Consensus 226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~i-a~~~~~-~~r~ig 282 (521)
+||+||.+.- .+..+-+++..++.+..+ ++|++..|...++ ..+ ...... |.|++|
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG 160 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 9999998751 122244555667777754 5555444433322 222 333343 367765
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.70 E-value=2.2e-08 Score=86.25 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=74.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++..|. +++++|++++.++.-...+.+.. ...+ ......+.++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~----------~~~~~~~~d~~~l~ 68 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLE----------AHGNIVINDWAALA 68 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSS----------SCCEEEESCGGGGT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccC----------CccceeccCHHHhc
Confidence 699999999999999999998885 89999999987654222222110 0000 11122356789999
Q ss_pred CCCEEEEeccc------------------chhhHHHHHHHHHhhCCCCceEEecCCcCcH-HH-HHHhhcC-CCceeec
Q 009963 226 DVDMVIEAIIE------------------NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NL-IGERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav~e------------------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~-ia~~~~~-~~r~ig~ 283 (521)
+||+||.+... +..+-+++...+.+++ |+++++..|-...+ +. +...... +.|++|.
T Consensus 69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt 146 (146)
T d1hyha1 69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIGT 146 (146)
T ss_dssp TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence 99999987531 1123344455566655 56666555443322 22 2233333 4677763
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.67 E-value=6.2e-08 Score=83.09 Aligned_cols=122 Identities=18% Similarity=0.304 Sum_probs=76.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.+|+++|..++..+. ++.++|++++.+......+.... .......++..+.+++++++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~------------~~~~~~~~i~~~~d~~~~~~ 69 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN 69 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc------------cccCCCCEEEecCcHHHhcC
Confidence 599999999999999999998886 99999999886654332221110 01111234566778999999
Q ss_pred CCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHH-hhcC-CCceee
Q 009963 227 VDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGE-RTYS-KDRIVG 282 (521)
Q Consensus 227 aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~-~~~~-~~r~ig 282 (521)
+|+||.+... +..+-+++..++.++++ +++++..|....+ +.+.. .... +.|++|
T Consensus 70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~sglp~~rViG 141 (142)
T d1uxja1 70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFPKERVIG 141 (142)
T ss_dssp CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 9999998721 12233455566777654 5566544433322 22222 2232 456666
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=3.3e-09 Score=93.48 Aligned_cols=104 Identities=13% Similarity=-0.022 Sum_probs=73.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
|||+|||+|.||+.+|..|+++|++|++++++++..+... ..+. . .........+.+.+.+.++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~-~----~~~~~~~~~~~~~~~~~~~ 64 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET-D----GSIFNESLTANDPDFLATS 64 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT-T----SCEEEEEEEESCHHHHHTC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccC-C----ccccccccccchhhhhccc
Confidence 6999999999999999999999999999999886433210 0010 0 0001112223344667899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL 269 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ 269 (521)
|+||.|++... -..+++.+.+.+++++++++...++...+
T Consensus 65 D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred ceEEEeecccc--hHHHHHhhccccCcccEEeeccCcccHHH
Confidence 99999998653 35778889999999988877766665544
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.61 E-value=1.6e-08 Score=95.46 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=75.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|++|+++||||+|+|++++.+.+.+||++++.. |+
T Consensus 162 lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 205 (249)
T d1sg4a1 162 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI--PD---------------------------------- 205 (249)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred cccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH 123 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~ 123 (521)
.+...+|+.++......+.+.++.|.+.|..+..+++.++.+.
T Consensus 206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le 248 (249)
T d1sg4a1 206 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ 248 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 1444678888888777888999999999999999999988764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.56 E-value=4.3e-08 Score=84.02 Aligned_cols=120 Identities=21% Similarity=0.365 Sum_probs=69.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc-ccccccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS-LLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~~ 224 (521)
+||+|||+|.+|+++|..++..|+ ++.++|++++.++.-...+. ... . ... ....+.+++++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~--------~~~-~------~~~~~~~~~~~~~~~ 66 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDIN--------HGL-P------FMGQMSLYAGDYSDV 66 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHT--------TSC-C------CTTCEEEC--CGGGG
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeec--------cCc-c------cCCCeeEeeCcHHHh
Confidence 489999999999999999999987 89999999986533211111 110 0 001 11234568899
Q ss_pred cCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCc-HHH-HHHhhcC-CCceeec
Q 009963 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID-LNL-IGERTYS-KDRIVGA 283 (521)
Q Consensus 225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-i~~-ia~~~~~-~~r~ig~ 283 (521)
++||+||.+.- .+..+-+++...+.++++ +++++..|...+ ++. +...... +.|++|+
T Consensus 67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPVDIITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCC-CceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence 99999999842 122244455566777765 455543333222 122 2333333 4678875
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.54 E-value=1.6e-07 Score=80.52 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=61.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|||+ |.+|..+|..++..|. ++.++|++++. ++.....+.+. ....+.- ..-.+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~---~~~~~~~-------~~~~~~~~~d~~ 70 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA---LAGTRSD-------ANIYVESDENLR 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHH---HTTSCCC-------CEEEEEETTCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhc---ccccccC-------CccccCCcchHH
Confidence 58999996 9999999999999985 99999998643 22111111111 1000100 001122345788
Q ss_pred cccCCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEE
Q 009963 223 SFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 223 ~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
++++||+||.+. | .+..+-+++...+.++++ +.|++
T Consensus 71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv 120 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV 120 (145)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence 999999999985 2 122234455566777765 45553
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.53 E-value=1.6e-07 Score=81.60 Aligned_cols=125 Identities=23% Similarity=0.325 Sum_probs=76.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
+-+||+|||+|..|+.+|..++..++ +++++|++++.++.....+.+.... .+ ....+..++++ ++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~---~~---------~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV---VD---------TNVSVRAEYSYEAA 73 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH---TT---------CCCCEEEECSHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc---cC---------CeeEEeccCchhhh
Confidence 35799999999999999999888886 8999999998765433333221100 00 01123344555 56
Q ss_pred ccCCCEEEEecc------------c-------chhhHHHHHHHHHhhCCCCceEEecCCcCcH-HH-HHHhhcC-CCcee
Q 009963 224 FKDVDMVIEAII------------E-------NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NL-IGERTYS-KDRIV 281 (521)
Q Consensus 224 ~~~aDlVIeav~------------e-------~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~-ia~~~~~-~~r~i 281 (521)
+++||+||.+.. . +..+-+++..++.++++ ++++...|....+ .. +...+.. +.|++
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aiviivsNPvd~lt~~~~~~sg~p~~rVi 152 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIVVTNPLDCMVKVMCEASGVPTNMIC 152 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEEeCCcHHHHHHHHHHHhCcChhcEe
Confidence 899999999762 1 11244556667777765 5555544443321 22 2233333 56788
Q ss_pred ec
Q 009963 282 GA 283 (521)
Q Consensus 282 g~ 283 (521)
|+
T Consensus 153 G~ 154 (154)
T d1pzga1 153 GM 154 (154)
T ss_dssp EC
T ss_pred cC
Confidence 75
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=1.6e-07 Score=81.78 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=67.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|||+|.+|+.+|..++..|+ ++.++|++++.+..-...+.+. ....+ ...+..+.++++++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVSA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhhc
Confidence 589999999999999999999987 8999999998765432222211 00000 11234456789999
Q ss_pred CCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 226 ~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+||+||.+.- .+..+.+++...+.+.. ++.|++..|..
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNP 138 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNP 138 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSS
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCc
Confidence 9999998751 12233444444566654 56666555443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.46 E-value=5e-07 Score=77.87 Aligned_cols=123 Identities=19% Similarity=0.333 Sum_probs=75.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
.||+|||+|..|+.+|..++..+. ++.++|++++.++.....+.+.. .. ......+..+.+++++++
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~-~~-----------~~~~~~v~~~~~~~~~~~ 71 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTN-VM-----------AYSNCKVSGSNTYDDLAG 71 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHH-HH-----------HTCCCCEEEECCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhc-cc-----------cCCCcEEEecccccccCC
Confidence 599999999999999998888875 89999999887654333222210 00 011123444567899999
Q ss_pred CCEEEEecc--c----------chh-------hHHHHHHHHHhhCCCCceEEecCCcCcH-HHHH-Hhhc-CCCceeec
Q 009963 227 VDMVIEAII--E----------NVS-------LKQQIFADLEKYCPPHCILASNTSTIDL-NLIG-ERTY-SKDRIVGA 283 (521)
Q Consensus 227 aDlVIeav~--e----------~~~-------~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia-~~~~-~~~r~ig~ 283 (521)
||+||.+.- . ..+ +-+++...+.+++ |+++++..|....+ +.+. .... .+.|++|+
T Consensus 72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~sg~p~~rViG~ 149 (150)
T d1t2da1 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL 149 (150)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence 999998862 1 111 3344555677765 56666554443322 2222 2223 25678775
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=2.9e-06 Score=74.69 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=50.1
Q ss_pred eEEEEEeCChhhHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|..|...+. .++.. +.+++++|+|+++++.....+.+..... + ..-++..++|.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~i~~~td~ 70 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---G---------ADLKFEKTMNL 70 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---T---------CCCEEEEESCH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc---C---------CCeEEEEeCCh
Confidence 59999999999976543 34332 4699999999998875443333322111 1 11245556665
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++++||+||.++
T Consensus 71 ~eaL~dad~Vv~~~ 84 (171)
T d1obba1 71 DDVIIDADFVINTA 84 (171)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhcccCCCeEeeec
Confidence 6799999999875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.28 E-value=5.7e-06 Score=74.38 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=67.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
|||+|||+|-+|..+|.+|+ .|++|+.+|.|++.++...+.. +..++.+.+. ...++..+++. .
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~----------~~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS----------KQLSIKATLDSKA 69 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH----------SCCCEEEESCHHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhh----------hhhhhhccchhhh
Confidence 68999999999999998776 6999999999999887654211 0111111111 11233333333 4
Q ss_pred cccCCCEEEEecccchh---------hHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 223 SFKDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~---------~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
...++|+|+.|+|...+ ......+.+... .++.+++ ..|++++....
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ii-i~Stv~pgt~~ 125 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLI-IKSTIPIGFIT 125 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEE-ECSCCCTTHHH
T ss_pred hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEE-eeeecCceeee
Confidence 57899999999976543 122233334443 4555554 35666665443
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=98.23 E-value=2.9e-07 Score=85.48 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.++|++++.. |+
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~--~~---------------------------------- 200 (230)
T d2a7ka1 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY--PA---------------------------------- 200 (230)
T ss_dssp HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred cccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 32
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAE 107 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~ 107 (521)
.|...+|+.+++.....+++.++.|+.
T Consensus 201 ~a~~~~K~~l~~~~~~~l~~~~~~~~a 227 (230)
T d2a7ka1 201 SAFINTKRAVNKPFIHLLEQTRDASKA 227 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 144467888888777677777766643
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.21 E-value=2.7e-06 Score=72.58 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
.||+|||+ |.+|+.+|..++..|+ ++.++|+++...+. . .+ . ...... .....+...+.++++
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-Dl------~-~~~~~~-----~~~~~~~~~~~~~~~ 66 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-DL------S-HIETRA-----TVKGYLGPEQLPDCL 66 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-HH------T-TSSSSC-----EEEEEESGGGHHHHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-HH------h-hhhhhc-----CCCeEEcCCChHHHh
Confidence 38999996 9999999999999987 79999998753221 1 10 0 000000 001122333335779
Q ss_pred cCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 225 ~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
++||+||.+.- .+..+-+++...+.++. |+++++..|...+
T Consensus 67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD 121 (144)
T d1mlda1 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVN 121 (144)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHH
T ss_pred CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchh
Confidence 99999998752 22334556666777774 5666665554443
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.5e-06 Score=75.86 Aligned_cols=72 Identities=18% Similarity=0.082 Sum_probs=47.1
Q ss_pred eEEEEEeCChhhHHHHHHHH-h-C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC
Q 009963 148 KKVAILGGGLMGSGIATALI-L-S----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~-~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~ 220 (521)
+||+|||+|..|.+.+.... . . +-++.++|++++++.... .+. +...... ..+.. +.+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~-d~~---~~~~~~~-----------~~~~~t~~~ 65 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFV---KRLVKDR-----------FKVLISDTF 65 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHH---HHHHTTS-----------SEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHH-HHH---HhhhccC-----------ceEEEecCc
Confidence 58999999999988886432 2 1 358999999999876432 211 1111111 12333 334
Q ss_pred cccccCCCEEEEec
Q 009963 221 YESFKDVDMVIEAI 234 (521)
Q Consensus 221 ~~~~~~aDlVIeav 234 (521)
++++++||+||.++
T Consensus 66 ~~~l~~aDvVVita 79 (162)
T d1up7a1 66 EGAVVDAKYVIFQF 79 (162)
T ss_dssp HHHHTTCSEEEECC
T ss_pred ccccCCCCEEEEec
Confidence 67899999999986
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.12 E-value=8.8e-06 Score=69.06 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=62.5
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc-ccccCc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL-TGVLDY 221 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~ 221 (521)
.||+||| +|..|+.+|..++..|+ ++.++|++. +.++.-...+.+. . ...... ..+.++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~----~-----------~~~~~~~i~~~~~ 65 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----I-----------AYDSNTRVRQGGY 65 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----H-----------TTTCCCEEEECCG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhc----c-----------cccCCceEeeCCH
Confidence 4899999 69999999999999987 899999753 3322111111111 0 011111 124578
Q ss_pred ccccCCCEEEEecc--c------------chhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 222 ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 222 ~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++++||+||.+.- . +..+-+++...+.+++ |+++++..|..
T Consensus 66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNP 121 (142)
T d1o6za1 66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNP 121 (142)
T ss_dssp GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSS
T ss_pred HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecCh
Confidence 99999999998751 1 2334445556677665 55666555443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.11 E-value=1.7e-06 Score=76.90 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=38.8
Q ss_pred eEEEEE-eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 148 KKVAIL-GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 148 ~kI~VI-G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|||+|| |+|.||.+||..|+++|++|++|+|++++++...+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i 44 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 589999 7899999999999999999999999999988766544
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.06 E-value=5e-07 Score=75.29 Aligned_cols=47 Identities=6% Similarity=-0.202 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHH
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELA 517 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 517 (521)
|.+|++.+++|||++++++|+ ++.+|| ..+. ..|||+|||+++|.+|
T Consensus 3 i~NRi~~~~~~ea~~ll~eG~-~~~~ID--~a~~-~~G~p~Gpf~l~D~vG 49 (124)
T d1wdka1 3 LVNRVLFPYFGGFAKLVSAGV-DFVRID--KVME-KFGWPMGPAYLMDVVG 49 (124)
T ss_dssp THHHHHHHHHHHHHHHHHTTC-CHHHHH--HHHH-HHTCSSCHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHcCC-CHHHHH--HHHh-hccCCCCHHHHHHhcc
Confidence 579999999999999999997 578999 7655 6899999999999998
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=2.3e-06 Score=73.16 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=62.5
Q ss_pred eEEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+||+||| +|.+|+.+|..++.. + .++.++|+++.....+. .+.+ .... .....+..+.++++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl~h-------~~~~------~~~~~~~~~~~~~~ 66 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DLSH-------IPTA------VKIKGFSGEDATPA 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HHHT-------SCSS------CEEEEECSSCCHHH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HHHC-------Cccc------cCCcEEEcCCCccc
Confidence 5999999 599999999987643 4 69999999753211111 1100 0000 00122334556888
Q ss_pred ccCCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 224 FKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 224 ~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
++++|+||.+. | .+..+-+++..++.++++ +++++..|...
T Consensus 67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p-~aivivvtNPv 121 (145)
T d2cmda1 67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPV 121 (145)
T ss_dssp HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSH
T ss_pred cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCC-CcEEEEccCCc
Confidence 99999999886 2 123345556667777764 45555555443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.04 E-value=2.5e-05 Score=68.11 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=47.8
Q ss_pred eEEEEEeCChhhHHHHH-HHHh-C-C---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT-ALIL-S-N---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~-~la~-~-G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||+|||+|..|...+. .+.. . . -+++++|+++++++.....+.... .. .+ ...++..++|+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~-~~--~~---------~~~~~~~~~d~ 71 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI-RE--KA---------PDIEFAATTDP 71 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH-HH--HC---------TTSEEEEESCH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH-HH--hC---------CCcceEecCCh
Confidence 59999999999876443 2222 2 2 389999999998764332222211 10 01 11244556565
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++++||+||.++
T Consensus 72 ~eal~~AD~Vvita 85 (167)
T d1u8xx1 72 EEAFTDVDFVMAHI 85 (167)
T ss_dssp HHHHSSCSEEEECC
T ss_pred hhccCCCCEEEECC
Confidence 7799999999997
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.03 E-value=1.8e-05 Score=69.32 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=67.8
Q ss_pred eEEEEEeCChhhHH--HHHHHHhC----CCcEEEEeCCHHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 148 KKVAILGGGLMGSG--IATALILS----NYPVILKEVNEKFLEAG-IGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~--iA~~la~~----G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
+||+|||+|..|.+ ++..+... +-+++++|++++..... .......+ ....+ ...++..++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~--~~~~~---------~~~~~~~~td 70 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRM--VEKAG---------VPIEIHLTLD 70 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHH--HHHTT---------CCCEEEEESC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHH--HHhcC---------CCceeeecCC
Confidence 58999999988754 33334332 23999999988642211 11100000 00111 1123445555
Q ss_pred -cccccCCCEEEEeccc----------------------------------chhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 221 -YESFKDVDMVIEAIIE----------------------------------NVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 221 -~~~~~~aDlVIeav~e----------------------------------~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
.+++++||+||.++.- +..+-+++.+++.+++ |++++...|...
T Consensus 71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPv 149 (169)
T d1s6ya1 71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPA 149 (169)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChH
Confidence 4778999999999842 2233466777888876 566665444333
Q ss_pred cH-HHHHHhhcCCCceeec
Q 009963 266 DL-NLIGERTYSKDRIVGA 283 (521)
Q Consensus 266 ~i-~~ia~~~~~~~r~ig~ 283 (521)
++ +........+.|++|+
T Consensus 150 dv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 150 GMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp HHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHCCCCCEEee
Confidence 22 2222222224577775
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=98.02 E-value=8.8e-07 Score=83.15 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=39.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|++||++++|+||+++||||+|||++++.+++.++|++++..
T Consensus 169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 210 (249)
T d1szoa_ 169 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210 (249)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTS
T ss_pred ecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999885
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.98 E-value=3.6e-06 Score=74.76 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=73.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+++.. + ......++ +.+++
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~~ 92 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALRE 92 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhhc
Confidence 68999999999999999999999999999987531 1 01122344 45899
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC--cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~l~i~~ia~~~~ 275 (521)
||+|+.++|-+.+.+.-+=.+....++++++|+..+- .+.-+.+...+.
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcc
Confidence 9999999998877654444566677899999874332 355567777664
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.96 E-value=7.2e-06 Score=68.79 Aligned_cols=95 Identities=22% Similarity=0.195 Sum_probs=62.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (521)
+++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+. ..|.. .......-...+ ..+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-----------~~~~~------~~~gd~~~~~~l~~a~i~ 63 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYATH------AVIANATEENELLSLGIR 63 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-----------TTCSE------EEECCTTCTTHHHHHTGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-----------HhCCc------ceeeecccchhhhccCCc
Confidence 4789999999999999999999999999999999987643 11210 000000000011 2378
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
+||.||.+++++... ..+...+.+..+...|++-
T Consensus 64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEee
Confidence 999999999987543 2333444455555556654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.89 E-value=4.6e-06 Score=75.03 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=71.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+....... ..+ . ...++ +.+++
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~-------------~-~~~~l~~~l~~ 96 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG-------------Y-YVDSLDDLYKQ 96 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------C-BCSCHHHHHHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce-------------e-eeccccccccc
Confidence 68999999999999999999899999999976543111 011 1 12344 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
||+|+.++|-+.+.+.-+=.+....++++++++ |+| .+.-.++...+.
T Consensus 97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~ 147 (197)
T d1j4aa1 97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLD 147 (197)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHh
Confidence 999999999877655444455566789999886 555 355566766663
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.89 E-value=7.7e-05 Score=62.16 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=61.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
|||.|+|+|.+|..+|..|.+.|++|+++|.|++.++...++ .+. .-+.+ .++ +
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~----------~vi~Gd~~~~~~l~~ 60 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA----------LVINGDCTKIKTLED 60 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS----------EEEESCTTSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh----------hhccCcccchhhhhh
Confidence 589999999999999999999999999999999988764321 110 00110 011 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
..++++|.++-+.+.+. . ..+...+.+.+.+..+++...
T Consensus 61 ~~i~~a~~vv~~t~~d~-~-N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 61 AGIEDADMYIAVTGKEE-V-NLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp TTTTTCSEEEECCSCHH-H-HHHHHHHHHHTTCCCEEEECS
T ss_pred cChhhhhhhcccCCcHH-H-HHHHHHHHHHcCCceEEEEec
Confidence 23688999998876653 2 223344445566666665433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.83 E-value=3.8e-06 Score=75.35 Aligned_cols=102 Identities=17% Similarity=0.054 Sum_probs=73.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+....-... .. .+....+++ .++.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~~-------------~~~~~~~l~~ll~~ 104 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------AL-------------GLQRVSTLQDLLFH 104 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------HH-------------TCEECSSHHHHHHH
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccchh------------hh-------------ccccccchhhcccc
Confidence 689999999999999999999999999999865421110 00 122234554 4689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-+.+.+.-+=.+....++++++++ |+|- +.-+++...+.
T Consensus 105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALK 155 (193)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHH
Confidence 999999999777665544455667789999886 5553 45567777664
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=2.9e-05 Score=66.86 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=68.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|+|.|.+|.++|..+...|..|+++|++|-..-++. ++-.....-.+.+..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~------------------------~dG~~v~~~~~a~~~a 80 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA------------------------MEGYEVTTMDEACQEG 80 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------------------HTTCEECCHHHHTTTC
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh------------------------cCceEeeehhhhhhhc
Confidence 5899999999999999999999999999999995432221 1112222223568889
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHh
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER 273 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~ 273 (521)
|+||.|.-...-+.. +-.+.+++++|+++.++. +++..+.+.
T Consensus 81 divvtaTGn~~vI~~----eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~ 125 (163)
T d1li4a1 81 NIFVTTTGCIDIILG----RHFEQMKDDAIVCNIGHFDVEIDVKWLNEN 125 (163)
T ss_dssp SEEEECSSCSCSBCH----HHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred cEEEecCCCccchhH----HHHHhccCCeEEEEeccccceecHHHHhhc
Confidence 999988754332333 334468999999866543 566666553
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.77 E-value=1.3e-05 Score=70.22 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=36.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|||+|.||..+|..|+++|++|+++|++.++++..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l 41 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL 41 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence 689999999999999999999999999999999988764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=2.4e-05 Score=69.46 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=77.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+........ ..+ +. ..++ +.++.
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------~~~-------------~~-~~~l~ell~~ 98 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA------------QLG-------------IE-LLSLDDLLAR 98 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH------------HHT-------------CE-ECCHHHHHHH
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh------------hcC-------------ce-eccHHHHHhh
Confidence 689999999999999999988899999999875432211 001 11 1233 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhcCC-Cceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYSK-DRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~~~-~r~ig~hf~ 286 (521)
||+|+.++|-+.+.+.-+=++....++++++++ |+| .+.-+++.+.+... -...++--|
T Consensus 99 sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~~~~i~~a~lDV~ 161 (184)
T d1ygya1 99 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAITGGHVRAAGLDVF 161 (184)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred CCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence 999999999888765544456667889999886 555 35556777777432 233444444
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.69 E-value=1.2e-05 Score=71.96 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=78.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+......... .. ......++ +.++.
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~ll~~ 103 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-----------SY-------------QATFHDSLDSLLSV 103 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHHHH
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhh-----------cc-------------cccccCCHHHHHhh
Confidence 7999999999999999999999999999998654222110 00 11122344 35789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~ 286 (521)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+|- ++-+.+.+.+.. .-...++-.|
T Consensus 104 sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~ 166 (191)
T d1gdha1 104 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF 166 (191)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred CCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence 999999999887765544456667899999886 6663 455677766642 2233455544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.68 E-value=5.1e-06 Score=74.96 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|+.||+....... ..+.. .++ +.++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~~-~~l~~l~~~ 97 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFDY-VSLEDLFKQ 97 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCEE-CCHHHHHHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchhH-HHHHHHHHh
Confidence 68999999999999999999999999999986432100 01111 234 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++....++++++++ |+|- +.-+++...+.
T Consensus 98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHh
Confidence 999999999887765444455666789999886 6653 45567777664
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.65 E-value=7.2e-05 Score=64.62 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=61.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (521)
++|.|||+|.||..++..|...|+ +|++++|+.++++...+.+ |. ....-.+ .+.+.
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~~-----------~~~~~~~~~~~l~ 83 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG-----------EAVRFDELVDHLA 83 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC-----------EECCGGGHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------hc-----------ccccchhHHHHhc
Confidence 689999999999999999999998 6999999998876543211 10 1111112 24578
Q ss_pred CCCEEEEecccch-hhHHHHHHHHHhhCC--CCceEEec
Q 009963 226 DVDMVIEAIIENV-SLKQQIFADLEKYCP--PHCILASN 261 (521)
Q Consensus 226 ~aDlVIeav~e~~-~~k~~v~~~l~~~~~--~~~il~sn 261 (521)
++|+||.|++.+. -+.++.++.....-+ ...++++-
T Consensus 84 ~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 9999999996443 245566655433322 23355554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.62 E-value=0.00012 Score=62.84 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=59.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
.||+|||+ |..|.++|..|++.+. ++.++|.++.... +.. ++........ .....+..++
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~-~~~-----l~~~~~~~~~------~~~~~~~~~~ 71 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGV-LDG-----VLMELQDCAL------PLLKDVIATD 71 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHH-HHH-----HHHHHHHTCC------TTEEEEEEES
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhh-hhh-----hhhhhccccc------ccccccccCc
Confidence 59999996 9999999999987543 5788887654321 110 0000011100 0112233333
Q ss_pred -CcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceE
Q 009963 220 -DYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL 258 (521)
Q Consensus 220 -~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il 258 (521)
++++++++|+||.+.. .+..+-+++...+.++++++.++
T Consensus 72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~i 125 (154)
T d5mdha1 72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKV 125 (154)
T ss_dssp CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEE
Confidence 3578999999998751 11234556666788888887744
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.62 E-value=1.6e-05 Score=70.99 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=73.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+....-.... .. .+....++ +.+++
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~~l~~ 100 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------EL-------------NLTWHATREDMYPV 100 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHGGG
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------cc-------------cccccCCHHHHHHh
Confidence 6999999999999999999888999999998532211100 00 11223344 45799
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYS 276 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~~ 276 (521)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+| .+.-+.+...+..
T Consensus 101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALES 152 (188)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHT
T ss_pred ccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHhC
Confidence 999999999887665555566777889999886 555 3556677777643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=5.3e-05 Score=67.40 Aligned_cols=110 Identities=22% Similarity=0.215 Sum_probs=76.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+...|.+|..||+....... ......++ +.++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----------------------------~~~~~~~l~ell~~ 96 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG----------------------------NATQVQHLSDLLNM 96 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCT----------------------------TCEECSCHHHHHHH
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchhh----------------------------hhhhhhhHHHHHhh
Confidence 68999999999999999999999999999986431100 01112234 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhcC-CCceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYS-KDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~~-~~r~ig~hf~ 286 (521)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+| .+.-+++.+.+.. .....++..|
T Consensus 97 sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~lvde~aL~~aL~~~~~~~a~lDV~ 159 (188)
T d1sc6a1 97 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALASKHLAGAAIDVF 159 (188)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred ccceeecccCCcchhhhccHHHHhhCCCCCEEE-EcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence 999999999887765555566777889999886 555 3555677777643 3333444433
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.41 E-value=0.00017 Score=61.63 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=67.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++.|+|.|-.|.++|..+...|..|+++++||-..-++ .++-....+-.++++.+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a 79 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG 79 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence 689999999999999999999999999999999543221 22223333223668999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIG 271 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia 271 (521)
|++|.+.....-+.. +-.+.+++++|++.... -+.+..+.
T Consensus 80 Di~vTaTGn~~vI~~----~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 80 DFFITCTGNVDVIKL----EHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp SEEEECCSSSSSBCH----HHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred cEEEEcCCCCccccH----HHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 999999875433333 33346899999975543 24444443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.37 E-value=0.00039 Score=60.73 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=63.4
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
+..||+|+|+ |.+|.+++..|+.... ++.++|++... ++... -. ...... .....+
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~----md----l~d~a~------~~~~~~ 88 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA----ME----LEDSLY------PLLREV 88 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH----HH----HHTTTC------TTEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchh----hh----hccccc------ccccCc
Confidence 3469999996 9999999999987532 56777776532 22111 00 011100 112233
Q ss_pred c-cccCcccccCCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 216 T-GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 216 ~-~~~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
. .+.++++++++|+||... | .+..+-+++...+.+++++++++...+.
T Consensus 89 ~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 89 SIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 3 344478899999999875 1 2233455566678888888886654443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.00014 Score=62.40 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=59.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
.||+|||+ |.+|..+|..++..++ ...+++. +.+.++..... ...... .....+..
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~~ 70 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGLEA 70 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------cccccccc
Confidence 59999997 9999999999998753 1334443 33333321110 011000 01122222
Q ss_pred -ccCcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 218 -VLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 218 -~~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+.++++++++|+||.+. |. +..+-+++...+.+++++++++...|.
T Consensus 71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 33467899999999876 11 223445556678888888886654443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.23 E-value=0.00038 Score=59.84 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=63.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
-||.|||+|..|.+-+......|..|+++|.+++++++.... +...++. .......+ +.+++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~-------------~~~~~~~l~~~~~~ 95 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVEL-------------LYSNSAEIETAVAE 95 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEE-------------EECCHHHHHHHHHT
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hccccee-------------ehhhhhhHHHhhcc
Confidence 599999999999999999999999999999999988764321 1110000 00000112 45789
Q ss_pred CCEEEEec--ccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||-++ |-... -+-+-++.-+.++++.++++.+
T Consensus 96 aDivI~aalipG~~a-P~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 96 ADLLIGAVLVPGRRA-PILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CSEEEECCCCTTSSC-CCCBCHHHHTTSCTTCEEEETT
T ss_pred CcEEEEeeecCCccc-CeeecHHHHhhcCCCcEEEEee
Confidence 99999997 22211 0011234455789999998754
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=9.6e-05 Score=69.41 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVST 31 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~ 31 (521)
|++||++++|+||+++||||+|++++++...
T Consensus 173 llltg~~~~a~eA~~~Glv~~v~~~~~~~~~ 203 (266)
T d1pjha_ 173 CLMFNKPFKYDIMCENGFISKNFNMPSSNAE 203 (266)
T ss_dssp HHHTTCCEEHHHHHHTTCCSEECCCCTTCHH
T ss_pred hhccCCcCCHHHHHHCCCEeEeeCchhhhHH
Confidence 4789999999999999999999987654433
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.05 E-value=0.00042 Score=60.08 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=35.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
++|.|||+|-++.+++..|.+.|. +|++++|+.++.+..
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L 57 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL 57 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence 589999999999999999999997 899999999887653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.02 E-value=0.0006 Score=59.30 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=51.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~ 226 (521)
++|.|+|+|-++.+++..|...+.+|++++|+.++++...+.+. ..+ .+.. ..+...+.+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~ 79 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT 79 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence 58999999999999999999988899999999988776543221 011 1111 111224678
Q ss_pred CCEEEEecccch
Q 009963 227 VDMVIEAIIENV 238 (521)
Q Consensus 227 aDlVIeav~e~~ 238 (521)
+|+||.|+|-.+
T Consensus 80 ~diiIN~tp~g~ 91 (171)
T d1p77a1 80 YDLVINATSAGL 91 (171)
T ss_dssp CSEEEECCCC--
T ss_pred cceeeecccccc
Confidence 999999998654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.00 E-value=0.0013 Score=56.71 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=48.1
Q ss_pred eEEEEEeCChhhHH-HHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGSG-IATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||||||+|.||.. ....+.+. ++++.++|.+++.++...+. .+ .....+++++ +
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------~~------------~~~~~~~~~~ll 59 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL 59 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------cc------------cccccccHHHhc
Confidence 48999999999976 45555554 56889999999887664321 11 1112344443 2
Q ss_pred -cCCCEEEEecccchhh
Q 009963 225 -KDVDMVIEAIIENVSL 240 (521)
Q Consensus 225 -~~aDlVIeav~e~~~~ 240 (521)
.+.|+|+.|+|.+...
T Consensus 60 ~~~iD~V~I~tp~~~H~ 76 (167)
T d1xeaa1 60 QYGVDAVMIHAATDVHS 76 (167)
T ss_dssp GGCCSEEEECSCGGGHH
T ss_pred ccccceecccccccccc
Confidence 4789999999987653
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00011 Score=65.84 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=35.4
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
.++||.|+|+ |..|+.++..|+++|++|++++|+++++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 4789999996 99999999999999999999999987643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.001 Score=57.71 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|+|+|-.+.+++..|.+.|.+|++++|+.++.+...
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~ 58 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA 58 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence 6899999999999999999999999999999998877643
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.91 E-value=0.00095 Score=57.28 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=64.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.|.-|.+=|..|..+|++|++--+.... .+++ .+.|. ...+-.++++.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~Gf-------------~v~~~~eA~~~ 72 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHGL-------------KVADVKTAVAA 72 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTTC-------------EEECHHHHHHT
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhcc-------------ccccHHHHhhh
Confidence 68999999999999999999999999987775432 2222 12331 12222366899
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEE
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~ 259 (521)
+|+|...+|+. ...+++. ++.+.++++..+.
T Consensus 73 aDiim~L~PD~--~q~~vy~~~I~p~lk~g~~L~ 104 (182)
T d1np3a2 73 ADVVMILTPDE--FQGRLYKEEIEPNLKKGATLA 104 (182)
T ss_dssp CSEEEECSCHH--HHHHHHHHHTGGGCCTTCEEE
T ss_pred cCeeeeecchH--HHHHHHHHhhhhhcCCCcEEE
Confidence 99999999954 4568885 6999999998775
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.87 E-value=0.0021 Score=51.48 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=54.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|..|..-+..|.+.|.+|++++.+...-.. .+.+.+.++ .+.-.-+.+++.++
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~ 73 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC 73 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence 68999999999999999999999999999876542111 112233221 11111223568999
Q ss_pred CEEEEecccchhhHHHHHHHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLE 249 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~ 249 (521)
++|+-|. .+.++...+++...
T Consensus 74 ~lv~~at-~d~~~n~~i~~~a~ 94 (113)
T d1pjqa1 74 WLAIAAT-DDDTVNQRVSDAAE 94 (113)
T ss_dssp SEEEECC-SCHHHHHHHHHHHH
T ss_pred cEEeecC-CCHHHHHHHHHHHH
Confidence 9999875 45566666665543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.85 E-value=0.0015 Score=53.78 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=53.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|+|+ |.||..|+..+...|+++... |. .+.+.+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~----------------------------------------~~~~~~~ 40 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV----------------------------------------NGVEELD 40 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET----------------------------------------TEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC----------------------------------------CcHHHhc
Confidence 58999996 999999999999999887643 21 1124567
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
++|+||+-...+ .-.+.++.. +..+..+++.|++++-+++.
T Consensus 41 ~~DVvIDFS~p~--~~~~~l~~~---~~~~~p~ViGTTG~~~~~~~ 81 (128)
T d1vm6a3 41 SPDVVIDFSSPE--ALPKTVDLC---KKYRAGLVLGTTALKEEHLQ 81 (128)
T ss_dssp CCSEEEECSCGG--GHHHHHHHH---HHHTCEEEECCCSCCHHHHH
T ss_pred cCCEEEEecCHH--HHHHHHHHH---HhcCCCEEEEcCCCCHHHHH
Confidence 899999865433 223333332 33456677888888876544
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.81 E-value=0.00067 Score=55.55 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=32.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
.++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~ 65 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 65 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence 468999999999999999999999999999987643
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.80 E-value=0.0019 Score=57.36 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSN------YPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G------~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (521)
.++||+|||.|.-|.+=|..|..+| ..|++-=+.. ...+++. +.|.-.. .....
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v~--------~~~v~ 103 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSEE--------NGTLG 103 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCGG--------GTCEE
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCccC--------CCccc
Confidence 3579999999999999999999955 5565543322 2222221 2342100 00011
Q ss_pred cCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 219 LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
+-.++++.+|+|+..+|+.. -.++++++.++++++..+.-
T Consensus 104 ~v~EAv~~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 104 DMWETISGSDLVLLLISDSA--QADNYEKVFSHMKPNSILGL 143 (226)
T ss_dssp EHHHHHHTCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEE
T ss_pred CHHHHHhhCCEEEEecchHH--HHHHHHHHHHhcCCCceeee
Confidence 12356889999999999764 46788999999999988753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.79 E-value=0.00059 Score=63.44 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
||++| | ++-+|.+||..|++.|++|++.|++++.+++..+.+
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l 46 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL 46 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 68777 4 477999999999999999999999999988766544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.75 E-value=0.0026 Score=54.74 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=36.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 3799999999999999998889999999999999988754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.74 E-value=0.00088 Score=54.66 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=33.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
++|.|||+|.+|.-+|..|++.|.+|+++++++.-+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS 67 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence 5899999999999999999999999999999876543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.0016 Score=50.78 Aligned_cols=37 Identities=32% Similarity=0.564 Sum_probs=32.9
Q ss_pred ccceEEEEEeCChhh-HHHHHHHHhCCCcEEEEeCCHH
Q 009963 145 RRVKKVAILGGGLMG-SGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG-~~iA~~la~~G~~V~l~d~~~~ 181 (521)
..+++|-|||.|-+| +++|..|...|++|+.+|....
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 457899999999999 7789999999999999999753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.64 E-value=0.0014 Score=57.14 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=51.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|.|||+|-++.+++..|.+.| +|++++|+.++++...+.+...+.. ... ..+.. .++ ....+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~-------~~~------~~~~~-~~~~~~~~~ 83 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK-------KFG------EEVKF-SGLDVDLDG 83 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC-------CHH------HHEEE-ECTTCCCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhch-------hhh------hhhhh-hhhhhccch
Confidence 58999999999999999997777 9999999999988766554332210 000 01111 122 23567
Q ss_pred CCEEEEecccc
Q 009963 227 VDMVIEAIIEN 237 (521)
Q Consensus 227 aDlVIeav~e~ 237 (521)
+|+||.|.|-.
T Consensus 84 ~dliIn~tp~g 94 (177)
T d1nvta1 84 VDIIINATPIG 94 (177)
T ss_dssp CCEEEECSCTT
T ss_pred hhhhccCCccc
Confidence 88999888754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.62 E-value=0.002 Score=55.95 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
-||.|||+|..|..=+.....-|..|+++|++++++++..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE 69 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence 5899999999999999988899999999999998877643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.021 Score=49.31 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=35.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 479999999999999998888898 7999999999987654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.002 Score=56.31 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=36.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (521)
++|.|||+|-+|.+++..|.+.|. ++++++|+++.++++..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 689999999999999999999987 79999999888776543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.003 Score=48.29 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=47.7
Q ss_pred eEEEEEeCChhhH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGS-GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~-~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||-|||.|-+|. ++|..|.+.|++|...|+++...-. .+.+.|. .+....+.+.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~ 60 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD 60 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence 5899999998886 7899999999999999998643222 2234442 1222334455788
Q ss_pred CCEEEEe--cccc
Q 009963 227 VDMVIEA--IIEN 237 (521)
Q Consensus 227 aDlVIea--v~e~ 237 (521)
+|+||-. +|++
T Consensus 61 ~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 61 PDLVIKTPAVRDD 73 (89)
T ss_dssp CSEEEECTTCCTT
T ss_pred CCEEEEecCcCCC
Confidence 9999864 4543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.45 E-value=0.0012 Score=60.22 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=31.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-+||.|||+|.+|.+.|..|+++|++|+++|++.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999863
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.0011 Score=51.39 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||+|+|+|..|.++|..|.+.|.+|+++|.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 5899999999999999999999999999998654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.35 E-value=0.0038 Score=54.45 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=49.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
.||||||+|.||...+..+... +++|+ ++|++++.++...+ +.+. . ......++++++
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~~-~--------~~~~~~~~~~~ll 62 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESLL 62 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------cccc-c--------cceeecCcHHHhh
Confidence 3899999999999999888765 56766 67999987655321 1111 0 112234455442
Q ss_pred --cCCCEEEEecccchhh
Q 009963 225 --KDVDMVIEAIIENVSL 240 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~ 240 (521)
.+.|+|+.|.|.+...
T Consensus 63 ~~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 63 EDPEIDALYVPLPTSLHV 80 (184)
T ss_dssp HCTTCCEEEECCCGGGHH
T ss_pred hccccceeeecccchhhc
Confidence 5689999999887653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.31 E-value=0.0023 Score=56.37 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=37.8
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
++|.|.| .|.+|..+|..|++.|.+|++.+|++++++...+.+
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~ 67 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 67 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence 5788888 499999999999999999999999999988765544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.029 Score=47.87 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 479999999999999999988998 7999999999988754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.19 E-value=0.0022 Score=59.24 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=36.0
Q ss_pred eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 148 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|||++| |+ +-+|.+||..|++.|++|++.|++++.++...+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 45 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 45 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 578766 55 67999999999999999999999999887765443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0049 Score=52.64 Aligned_cols=69 Identities=9% Similarity=-0.032 Sum_probs=45.6
Q ss_pred eEEEEEeCChhhHH-HHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSG-IATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~-iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||||||+|.||.. ....+... ++++ .++|++++..+...+.. + +...+++++
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~----------~-------------~~~~~~~~~l 58 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSLSSL 58 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc----------c-------------ccccccchhh
Confidence 48999999999986 45555544 6665 57899988765532210 1 122334433
Q ss_pred ccCCCEEEEecccchh
Q 009963 224 FKDVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~ 239 (521)
+++.|+|+.|.|.+..
T Consensus 59 ~~~~D~V~I~tp~~~h 74 (164)
T d1tlta1 59 AASCDAVFVHSSTASH 74 (164)
T ss_dssp HTTCSEEEECSCTTHH
T ss_pred hhhcccccccccchhc
Confidence 5789999999987754
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.001 Score=54.30 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=32.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+++.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l 59 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG 59 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence 689999999999999999999999999999876433
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.0014 Score=52.81 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=32.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 68999999999999999999999999999987653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.08 E-value=0.0017 Score=59.48 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47999999999999999999999999999998754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.03 E-value=0.0096 Score=52.71 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=36.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|+|-|.|.+|..+|..|.+.|..|+++|.+++.+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 589999999999999999999999999999999887653
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0031 Score=52.99 Aligned_cols=98 Identities=14% Similarity=0.271 Sum_probs=57.2
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
|+||||||+ |..|.-+...|..+ .+ +++....+... |..... ...........+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------------------g~~~~~--~~~~~~~~~~~~~ 60 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------------------QAAPSF--GGTTGTLQDAFDL 60 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------------------SBCCGG--GTCCCBCEETTCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------------------cccccc--cCCceeeecccch
Confidence 569999999 99999999866654 33 56666544321 110000 0000011112233
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
+.++++|+||.|+|.+. -+++..++.+ ...+++++||+|..-.
T Consensus 61 ~~~~~~DivF~a~~~~~--s~~~~~~~~~-~g~~~~VID~Ss~fR~ 103 (146)
T d1t4ba1 61 EALKALDIIVTCQGGDY--TNEIYPKLRE-SGWQGYWIDAASSLRM 103 (146)
T ss_dssp HHHHTCSEEEECSCHHH--HHHHHHHHHH-TTCCCEEEECSSTTTT
T ss_pred hhhhcCcEEEEecCchH--HHHhhHHHHh-cCCCeecccCCccccc
Confidence 46789999999998664 3444444443 2445688899987543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.037 Score=47.67 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=44.4
Q ss_pred eEEEEEeCChhhHH-HHHHHHhCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSG-IATALILSN--YPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~-iA~~la~~G--~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.||||||+|.||.. ....+.+.+ ++|+ ++|++++.++...+. .+ .....+++++
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------~~------------~~~~~~~~~e 61 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VG------------NPAVFDSYEE 61 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HS------------SCEEESCHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------cc------------ccceeeeeec
Confidence 38999999999987 466666543 3554 789999886653221 01 1122345543
Q ss_pred -c--cCCCEEEEecccchh
Q 009963 224 -F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 224 -~--~~aDlVIeav~e~~~ 239 (521)
+ .+.|+|+.|.|.+..
T Consensus 62 ll~~~~id~v~I~tp~~~h 80 (181)
T d1zh8a1 62 LLESGLVDAVDLTLPVELN 80 (181)
T ss_dssp HHHSSCCSEEEECCCGGGH
T ss_pred cccccccceeecccccccc
Confidence 2 457888888876643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.98 E-value=0.0014 Score=53.09 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=31.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||+|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 6899999999999999999999999999998653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0024 Score=55.74 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=32.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
-+||+|||+|..|-.-|..++++||+|+++|.+++
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 47999999999999999999999999999999864
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.94 E-value=0.0091 Score=56.96 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++++|||+|.++..-+..+... .+ +|.+|++++++.+....+.. ..+. . ...+..+++.
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~~-----------~-~~~~~~~a~~ 186 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRGI-----------S-ASVQPAEEAS 186 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTTC-----------C-EEECCHHHHT
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcCC-----------c-cccchhhhhc
Confidence 5799999999999998877642 33 89999999998877543321 1110 0 1123345678
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+||+||.|.+....+ |. .+.+++++.+....|
T Consensus 187 ~aDiV~taT~s~~P~----~~--~~~l~~G~hv~~iGs 218 (320)
T d1omoa_ 187 RCDVLVTTTPSRKPV----VK--AEWVEEGTHINAIGA 218 (320)
T ss_dssp SSSEEEECCCCSSCC----BC--GGGCCTTCEEEECSC
T ss_pred cccEEEEeccCcccc----cc--hhhcCCCCeEeecCC
Confidence 999999888765433 11 134566666554443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.84 E-value=0.0027 Score=58.66 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=30.1
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999864
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0029 Score=54.40 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=34.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.+|++.|.++++.+.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a 70 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA 70 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence 479999999999888888888899999999999887654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0019 Score=52.12 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||.|||+|..|.-+|..|.+.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 5899999999999999999999999999999764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0024 Score=47.42 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=32.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+++|+|||+|..|.-++....+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 57999999999999999999999999999998754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.71 E-value=0.0038 Score=54.39 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=31.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
+||+|||+|..|...|..|++.|+ +|+++|+++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 689999999999999999999999 5999998764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.63 E-value=0.019 Score=48.60 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=54.9
Q ss_pred eEEEEEeCChhhHHH-HHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGI-ATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~i-A~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~ 223 (521)
.||||||+|.+|..+ ...+... ..+++ +.+++++...... ..+.|.-.. ...+.. .+..+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~---------a~~~~i~~~~~~~d~l-------~~~~~ 68 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLAR---------AQRMGVTTTYAGVEGL-------IKLPE 68 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHH---------HHHTTCCEESSHHHHH-------HHSGG
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhh---------hhhcCCcccccceeee-------eeccc
Confidence 589999999999874 4555444 33554 4588765321110 011221100 000000 01123
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.+.|+|+.|+|......+...- ..+..++++.+|||.
T Consensus 69 ~~~iDiVf~ATpag~h~~~~~~~---~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 69 FADIDFVFDATSASAHVQNEALL---RQAKPGIRLIDLTPA 106 (157)
T ss_dssp GGGEEEEEECSCHHHHHHHHHHH---HHHCTTCEEEECSTT
T ss_pred ccccCEEEEcCCchhHHHhHHHH---HHHHcCCEEEEcccc
Confidence 56899999999977665544322 234678899999984
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.0073 Score=55.49 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.6
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
.+.|.|+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus 7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l 49 (251)
T d1vl8a_ 7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL 49 (251)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4445565 77999999999999999999999999887765443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.60 E-value=0.015 Score=52.25 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=46.4
Q ss_pred eEEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
-||||||+|.||.. +...+... +++|+ ++|++++.++...+. .| +.. ..+...+|+++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~----------~~-i~~-------~~~~~~~d~~el 95 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNFDKI 95 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSGGGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh----------hc-ccc-------ccccccCchhhh
Confidence 48999999999975 44554443 66765 889999987764321 11 111 11222345544
Q ss_pred c--cCCCEEEEecccchh
Q 009963 224 F--KDVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~--~~aDlVIeav~e~~~ 239 (521)
+ .+.|+|+.|+|....
T Consensus 96 l~~~~iD~V~I~tp~~~H 113 (221)
T d1h6da1 96 AKDPKIDAVYIILPNSLH 113 (221)
T ss_dssp GGCTTCCEEEECSCGGGH
T ss_pred cccccceeeeeccchhhh
Confidence 3 368889988887654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.025 Score=47.28 Aligned_cols=96 Identities=6% Similarity=0.028 Sum_probs=58.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--c
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--E 222 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~ 222 (521)
+|.|+|.|.+|..++..|...|++|+++|.+++......+. ....|. .-+.+. ++ + .
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~-------~~~~~~----------~vi~Gd~~d~~~L~~a 67 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ-------RLGDNA----------DVIPGDSNDSSVLKKA 67 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH-------HHCTTC----------EEEESCTTSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHH-------hhcCCc----------EEEEccCcchHHHHHh
Confidence 68999999999999999999999999999998764432211 111111 001110 11 1 2
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
.+.+||.||.+.+.+..- ..+...+....+.-.+++-..
T Consensus 68 ~i~~a~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~~~ 106 (153)
T d1id1a_ 68 GIDRCRAILALSDNDADN-AFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp TTTTCSEEEECSSCHHHH-HHHHHHHHHHTSSSCEEEECS
T ss_pred ccccCCEEEEccccHHHH-HHHHHHHHHhCCCCceEEEEc
Confidence 367899999998776432 222223344444444665433
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.56 E-value=0.004 Score=58.55 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=44.1
Q ss_pred HHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 110 ~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|+..++..+.++... ..+++ ..+-+||+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~----------~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 5 AECFQENDYEEFLEIAR--NGLKA----------TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp GGGGCCTTHHHHHHHHH--HCSCC----------CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HhhcCCccHHHHHHHHh--cCCCC----------CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35777777777666532 22221 1123699999999999999999999999999999775
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.55 E-value=0.0029 Score=51.16 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 6899999999999999999999999999998754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0031 Score=51.46 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|+|||+|..|.-+|..|++.|.+|+++++++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999999999999999999999999999754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.43 E-value=0.0045 Score=57.00 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|+|||+|.-|.+-|..|+++|++|+++|.++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 479999999999999999999999999999865
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.42 E-value=0.0054 Score=58.40 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=32.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+||+|||+|.-|.+.|..|+++|++|+++|.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 37999999999999999999999999999997763
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.42 E-value=0.0042 Score=57.27 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|||+|||+|.-|..-|..|+++|++|+++|.++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999765
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.36 E-value=0.0027 Score=50.95 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=32.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
+++.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence 68999999999999999999999999999997543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0081 Score=54.94 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|+++| |+ +-+|..+|..|+++|.+|+++|++++.++...+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~ 50 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK 50 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45544 66 5699999999999999999999999998876544
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.32 E-value=0.0041 Score=50.55 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999999986
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0082 Score=55.35 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=34.9
Q ss_pred EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|++ |.|+ +-+|.++|..|++.|++|++.+++++++++..+.+
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l 54 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC 54 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 455 4455 88999999999999999999999999888765543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.17 E-value=0.0073 Score=48.87 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 5899999999999999999999999999999764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0074 Score=48.09 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=32.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
.||+|||+|..|.-++....+-|++|.++|.+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 58999999999999999999999999999998764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.16 E-value=0.0033 Score=51.16 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=32.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+++.|||+|.+|.-+|..|.+.|.+|+++++++.-+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 689999999999999999999999999999976544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.073 Score=49.76 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=34.3
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
.+.|.|+ +-+|.++|..|++.|++|++.|++.+.++...+.+
T Consensus 14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el 56 (297)
T d1yxma1 14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL 56 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 3445555 77999999999999999999999999888765443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0095 Score=54.40 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=33.0
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~ 45 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAIS 45 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 55555 55 78999999999999999999999998887644
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.00 E-value=0.0055 Score=57.05 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=31.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
+|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999998753
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.98 E-value=0.0066 Score=48.89 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=32.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l 58 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK 58 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence 689999999999999999999999999999976543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.97 E-value=0.18 Score=46.59 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=35.2
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|++|| |+|-+|.+||..|++.|++|++.|++.+.++...+.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l 69 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 69 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 55555 4699999999999999999999999999888765443
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.95 E-value=0.0089 Score=49.18 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
++|.|||+|.+|.-+|..|++.|++|+++++++.-+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l 71 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL 71 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence 589999999999999999999999999999986544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.91 E-value=0.013 Score=50.32 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=42.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
.||+|||+|.||...+..+... ++++ .++|++++.... .......++ ...
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~ 56 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA 56 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence 4899999999999999888764 5654 467877543211 011122333 335
Q ss_pred cCCCEEEEecccch
Q 009963 225 KDVDMVIEAIIENV 238 (521)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (521)
.++|+|+.|.|...
T Consensus 57 ~~~D~Vvi~tp~~~ 70 (170)
T d1f06a1 57 DDVDVLFLCMGSAT 70 (170)
T ss_dssp TTCSEEEECSCTTT
T ss_pred cccceEEEeCCCcc
Confidence 77899998888764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.90 E-value=0.0087 Score=56.05 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=29.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
+|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999996 699999874
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.85 E-value=0.0099 Score=56.71 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=32.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHH
Q 009963 146 RVKKVAILGGGLMGSGIATALILSN--YPVILKEVNEK 181 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~ 181 (521)
.|+||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 5899999999999999999998876 59999999863
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.84 E-value=0.02 Score=47.83 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=56.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+||||||+ |..|.-+.+.|..+ .+ ++..+.-+... |+... .......+....+.+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~--~~~~~~~~~~~~~~~ 60 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPN--FGKDAGMLHDAFDIE 60 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCC--SSSCCCBCEETTCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------ccccc--cCCcceeeecccchh
Confidence 58999998 99999999877654 33 44444433211 11100 000000111122334
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
.++++|+||.|+|... -+++...+.+. ...+++++++|...+
T Consensus 61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdfR~ 102 (147)
T d1mb4a1 61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTLRM 102 (147)
T ss_dssp HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTTTT
T ss_pred hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCccccc
Confidence 5799999999998764 45555555442 345688899987643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.73 E-value=0.062 Score=45.96 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=34.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
+|.|+|+|.+|...++.+...|. +|++.|.++++++.+.
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 69999999999999998888897 7999999999887754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.66 E-value=0.0025 Score=57.50 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEE
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVIL 175 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l 175 (521)
+||+|||+|.+|.+.|..|+++|++|++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceE
Confidence 5899999999999999999999986543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.64 E-value=0.06 Score=49.09 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=32.7
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++|| |+ +-+|.+||..|++.|++|++.|++++.+++..
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~ 47 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA 47 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45555 55 67999999999999999999999998877643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.63 E-value=0.027 Score=48.17 Aligned_cols=40 Identities=30% Similarity=0.272 Sum_probs=33.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...| ..|++.|.++++++.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~ 74 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 74 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence 47999999999998888776666 47788999999887654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.62 E-value=0.011 Score=52.77 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
+|+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 79999999999999999999997 699999865
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.096 Score=48.00 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+++.|.|+ +-+|.++|..|++.|++|++.+++++.+++..+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45556676 669999999999999999999999999887543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.014 Score=54.43 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=31.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-.||+|||+|.-|-+-|..|+++|++|++++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3589999999999999999999999999999764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.59 E-value=0.012 Score=54.19 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=29.2
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|.|||+|.+|.+.|..|+++|++|+++|...
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999999853
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.012 Score=54.07 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=32.1
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+.|.|+ +-+|.++|..|++.|++|++.|++++.++..
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~ 46 (250)
T d1ydea1 8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 46 (250)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3445555 8899999999999999999999999887654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.55 E-value=0.13 Score=46.92 Aligned_cols=41 Identities=29% Similarity=0.301 Sum_probs=33.6
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
.+.|.|+ +-+|.++|..|++.|++|++.|++++.++...+.
T Consensus 6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~ 47 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA 47 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 3444465 6799999999999999999999999988775543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.54 E-value=0.13 Score=46.79 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=35.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+++.|.|+ +-||.+||..|++.|++|++.+++++.++...+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE 48 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45667775 889999999999999999999999998877543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.54 E-value=0.025 Score=51.91 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=34.0
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
.+.|.|+ +-+|.+||..|++.|++|++.|++++.+++..+.
T Consensus 10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 51 (259)
T d2ae2a_ 10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ 51 (259)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 3445566 6799999999999999999999999998876543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.54 E-value=0.024 Score=52.19 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=35.6
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
||+|| |++-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l 49 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI 49 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 67666 4588999999999999999999999999988765443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.48 E-value=0.042 Score=45.06 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=49.1
Q ss_pred EEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 149 KVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
||+|+|+ |.||..++..+.+. ++++. .+|+.... . .....
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~------------------------------------~~~~~ 43 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-S------------------------------------LLTDG 43 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-H------------------------------------HHHTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-h------------------------------------hhccc
Confidence 7999995 99999999876654 66654 33432110 0 00124
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
++|+||+-...+ .-.+. +...+..+..+++.|++++-+++.
T Consensus 44 ~~DvvIDFS~p~--~~~~~---~~~~~~~~~~~ViGTTG~~~~~~~ 84 (135)
T d1yl7a1 44 NTEVVIDFTHPD--VVMGN---LEFLIDNGIHAVVGTTGFTAERFQ 84 (135)
T ss_dssp TCSEEEECCCTT--THHHH---HHHHHHTTCEEEECCCCCCHHHHH
T ss_pred cCCEEEEcccHH--HHHHH---HHHHHhcCCCEEEeccccchhHHH
Confidence 689999865333 22233 333334567777888888866554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=94.44 E-value=0.03 Score=53.50 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=48.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++++|||+|.++..-+..+.. .++ +|.+||+++++.++..+++... .| -.+..+.+. +++
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~------~g-----------~~v~~~~s~~eav 191 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY------SG-----------LTIRRASSVAEAV 191 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC------TT-----------CEEEECSSHHHHH
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc------cC-----------CCceecCCHHHHH
Confidence 589999999999987776643 454 8999999999887755432100 01 123344554 458
Q ss_pred cCCCEEEEeccc
Q 009963 225 KDVDMVIEAIIE 236 (521)
Q Consensus 225 ~~aDlVIeav~e 236 (521)
++||+|+.|.+.
T Consensus 192 ~~ADIi~t~Tas 203 (340)
T d1x7da_ 192 KGVDIITTVTAD 203 (340)
T ss_dssp TTCSEEEECCCC
T ss_pred hcCCceeecccc
Confidence 889998887743
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.38 E-value=0.0073 Score=49.22 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=32.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
+++.|||+|.+|.-+|..|.+.|.+|+++++.+.-
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence 68999999999999999999999999999987643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.37 E-value=0.018 Score=52.69 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=35.1
Q ss_pred eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
.||++| |+ +-+|.++|..|++.|++|+++|++++.++...+.
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~ 53 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE 53 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 366666 65 7899999999999999999999999988775543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.35 E-value=0.023 Score=49.07 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NYPVILK-EVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~ 181 (521)
|-||||.|.|.+|+.+++.+..+ .++|+.+ |.++.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~ 37 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN 37 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence 45899999999999999999876 4676655 55544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.34 E-value=0.07 Score=45.73 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
..|.|+|+|.+|...++.+...|. +|+..|.++++++.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak 71 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM 71 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH
Confidence 369999999999999999999995 7999999999998765
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.32 E-value=0.094 Score=47.47 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++|| |+ +-+|.+||..|++.|++|++.|++++.++...
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 47 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA 47 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45544 66 77999999999999999999999998876643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.25 E-value=0.026 Score=51.89 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=34.6
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
.+.|.|+ +-+|.+||..|++.|++|++.|++++.+++..+.+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (260)
T d1zema1 7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV 49 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4445566 67999999999999999999999999888765443
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.015 Score=54.69 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=31.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|..|.|||+|..|.++|..|+++|++|+++|.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45799999999999999999999999999997763
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.24 E-value=0.014 Score=50.41 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. .|++.|.++++++.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 479999999999999999988997 6888999999887654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.03 Score=51.25 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=34.9
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|++|| |+ +-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l 55 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56655 44 78999999999999999999999999887765443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.16 E-value=0.028 Score=51.93 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=34.2
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~ 48 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI 48 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45555 55 7899999999999999999999999988876543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.07 E-value=0.035 Score=50.85 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=31.4
Q ss_pred EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHH
Q 009963 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAGIG 188 (521)
Q Consensus 149 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~ 188 (521)
|+++| | ++-||.++|..|++.|++|++.+++ .+.+++..+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~ 47 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA 47 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 56666 4 4779999999999999999999997 555555443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.06 E-value=0.036 Score=51.25 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=34.0
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 47 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQ 47 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 44455 55 7799999999999999999999999988876544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.04 E-value=0.02 Score=52.14 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=32.1
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++.|.|+ +-+|.++|..|++.|++|++.|++++.++..
T Consensus 7 ~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~ 45 (242)
T d1ulsa_ 7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA 45 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4555565 6799999999999999999999999887764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.97 E-value=0.047 Score=46.70 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=33.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|.. |++.|.++++++.++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 4799999999999999988788875 567799999887754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.93 E-value=0.043 Score=46.41 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=35.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.+|+..|+++++++.+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a 67 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA 67 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence 479999999999999998888899999999999988764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.18 Score=45.76 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=33.5
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
|+++| |+ +-+|.++|..|++.|++|++.|++.+.+++..+
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 65 779999999999999999999999998877543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.024 Score=50.09 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=29.8
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|.|||+|.-|...|..|+++|++|+++|.++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 7899999999999999999999999999975
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.71 E-value=0.045 Score=50.19 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=33.9
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
|++|| |+ +-+|.++|..|++.|++|++.+++++.+++..+.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~ 51 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK 51 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 44444 55 7799999999999999999999999988876543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.025 Score=48.04 Aligned_cols=104 Identities=17% Similarity=0.095 Sum_probs=57.6
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
..||+|+|+ |.||..|+..+.+. ++++ ..+|+.....-. ...|.+.. .....+..+.+++
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~----~~~~~~~~~~~~~~ 67 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG----AGKTGVTVQSSLDA 67 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS----SSCCSCCEESCSTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhc----cccCCceeeccHHH
Confidence 368999996 99999999988765 5555 334443221000 00011100 0001123344443
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
.+..||+||+-...+ .++.-++....-+..+++-|++++-+++.
T Consensus 68 ~~~~~DViIDFs~p~-----~~~~~~~~a~~~~~~~ViGTTG~~~~~~~ 111 (162)
T d1diha1 68 VKDDFDVFIDFTRPE-----GTLNHLAFCRQHGKGMVIGTTGFDEAGKQ 111 (162)
T ss_dssp TTTSCSEEEECSCHH-----HHHHHHHHHHHTTCEEEECCCCCCHHHHH
T ss_pred HhcccceEEEeccHH-----HHHHHHHHHHhccceeEEecCCCcHHHHH
Confidence 467899999865332 23333344444567777888888776553
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.045 Score=46.70 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=55.3
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..+|..|++.|..|++++.+...+. +.+.+
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~ 82 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 82 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence 589999995 5799999999999999999986543321 23568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+|+||.|+....-++ ...+++++++.+...+
T Consensus 83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence 999999986544333 2467899998877544
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.55 E-value=0.039 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=30.1
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
.+.|+ |+|.||..+|..|++.|.+|+++++.+.-+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~ 78 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY 78 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 45554 9999999999999999999999998864433
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.53 E-value=0.022 Score=51.94 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
.+|.|||+|.-|...|..|+++|+ +|+++|++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 489999999999999999999996 8999999764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.51 E-value=0.026 Score=50.75 Aligned_cols=36 Identities=39% Similarity=0.514 Sum_probs=33.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.-++|.|||+|.-|...|..+++.|++|+++|.+++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 457999999999999999999999999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.026 Score=48.07 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=35.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 4799999999999888877778999999999999887654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.45 E-value=0.046 Score=50.27 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=32.8
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 47 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC 47 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45544 55 77999999999999999999999999887654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.027 Score=51.08 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=32.9
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
||+|| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 46 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA 46 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 56655 54 77999999999999999999999998877644
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=93.42 E-value=0.25 Score=44.65 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=32.9
Q ss_pred EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++|| | ++-+|.++|..|++.|++|++.|++++.++...
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~ 47 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA 47 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55555 5 477999999999999999999999998877644
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=93.33 E-value=0.12 Score=48.74 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=34.5
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
-++|.|.|+ |.+|+.++..|.++|++|....++.+....
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~ 50 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN 50 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH
Confidence 478999987 999999999999999999999999876554
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.26 E-value=0.2 Score=45.39 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=32.8
Q ss_pred EEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 149 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
|++ |.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA 46 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 444 4455 88999999999999999999999998877654
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.18 E-value=0.15 Score=43.43 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=27.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEE-eCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILK-EVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~-d~~~~ 181 (521)
|.||||-|.|.+|..+.+.+...+ ++|+.+ |+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 579999999999999999887765 565544 55543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.11 E-value=0.024 Score=50.64 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~ 181 (521)
.||+|||+|.-|.+-|..|+++ |++|+++|..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3899999999999999999775 789999998864
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.10 E-value=0.14 Score=45.71 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=36.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|+|-|.|.+|..+|..|...|..|+..|.+...++...
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~ 79 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence 5899999999999999999999999999999998876543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.057 Score=48.95 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=33.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+++.|.|+ +-+|.+||..|++.|++|++.|++++.+++..
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~ 48 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV 48 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 35666666 78999999999999999999999998877643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.93 E-value=0.034 Score=47.62 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=34.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|-+|...++.+...|. .|+..|+++++.+.+.
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~ 70 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence 479999999999999999988885 8999999999887654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.77 E-value=0.15 Score=43.43 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=35.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. +|+..|+++++++.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~ 69 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence 479999999999999998888886 7999999999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.77 E-value=0.048 Score=49.91 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=33.9
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 190 (521)
|+++| |+ +-+|.++|..|++.|++|++.|++.+.+++..+.+
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~ 53 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV 53 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55544 65 67999999999999999999999998877655433
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=92.76 E-value=0.067 Score=48.20 Aligned_cols=73 Identities=25% Similarity=0.225 Sum_probs=44.9
Q ss_pred ceEEEEEeCChhhHHHHH----HHHh--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 147 VKKVAILGGGLMGSGIAT----ALIL--SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~----~la~--~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
-.||||||+|.+|+-++. .+.+ .+++|+ ++|++++.++...+. .+. ......+
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~----------~~~----------~~~~~~~ 75 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGFD 75 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHh----------ccc----------ccceeec
Confidence 369999999997765554 2333 356765 789999887664321 110 0111223
Q ss_pred Ccccc---cCCCEEEEecccchh
Q 009963 220 DYESF---KDVDMVIEAIIENVS 239 (521)
Q Consensus 220 ~~~~~---~~aDlVIeav~e~~~ 239 (521)
+++++ .+.|+|+.|+|....
T Consensus 76 ~~~~l~~~~~iD~V~i~tp~~~h 98 (237)
T d2nvwa1 76 SLESFAQYKDIDMIVVSVKVPEH 98 (237)
T ss_dssp CHHHHHHCTTCSEEEECSCHHHH
T ss_pred chhhcccccccceeeccCCCcch
Confidence 44432 468999999987654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.04 Score=46.75 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=52.4
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+. +|..++..|.+.|..|++++.....+. +.+++
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~ 80 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 80 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence 6899999865 899999999999999999875443221 23567
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||.|+.-..-++ .+.+++++++++..
T Consensus 81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence 999999985433333 23578889887654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.75 E-value=0.092 Score=47.78 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=35.8
Q ss_pred eEEEEE-eC-ChhhHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHH
Q 009963 148 KKVAIL-GG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 148 ~kI~VI-G~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i 190 (521)
.||+|| |+ +-+|.+||..|++ .|++|++.+++++.++...+.+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence 488888 55 6799999999986 6999999999999988765443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.75 E-value=0.25 Score=44.26 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=32.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+++.|.|+ +.+|.+||..|++.|++|++.+++.+.+++.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 45 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA 45 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 34556666 6699999999999999999999999877653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.028 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=29.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
++|.|||+|.+|..-+..|+++|.+|+++..
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6899999999999999999999999999954
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.043 Score=51.41 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=29.4
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|.|||+|.-|.+-|..|+++|++|+++|.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999999765
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=92.60 E-value=0.29 Score=44.31 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=32.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+++.|.|+ +-||.+||..|++.|++|++.|++++.+++.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~ 45 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT 45 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 34556666 6799999999999999999999999887654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.54 E-value=0.19 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.2
Q ss_pred eEEEEEeC-C--hhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-G--LMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G--~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+++.|.|+ | -+|.+||..|++.|++|++.+++++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45677786 5 4999999999999999999999964
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.045 Score=49.71 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=31.8
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
|+++| |++.+|.+||..|++.|++|++.|++++.++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~ 45 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE 45 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 55555 55899999999999999999999999987654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.42 E-value=0.13 Score=43.51 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|-+|...++.+...|. .|+..|.++++++.++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak 70 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence 479999999998888888877886 6788889998877653
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.073 Score=48.97 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=36.3
Q ss_pred eEEEEE--eCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHH
Q 009963 148 KKVAIL--GGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRV 190 (521)
Q Consensus 148 ~kI~VI--G~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i 190 (521)
++|+|| |.+-+|..+|..|++. |..|++.++++++++.+.+.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l 48 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL 48 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 579888 5688999999999975 899999999999988766543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.18 E-value=0.056 Score=48.52 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=30.0
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 88999999999999999999999999998754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.09 E-value=0.22 Score=42.32 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=26.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEE-EEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVI-LKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~-l~d~~~~~ 182 (521)
.||||.|.|.+|+.+.+.+.... ++|+ +.|.++..
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~ 39 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF 39 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence 59999999999999999887654 5554 44666543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.06 E-value=0.028 Score=44.75 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=29.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALIL---SNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~~ 182 (521)
++|+|||+|..|.-+|..+.+ .|.+|+++++.+.-
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i 56 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence 589999999999999987654 48899999987643
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.99 E-value=0.21 Score=45.26 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=31.4
Q ss_pred eEEEEEeC-Ch--hhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 148 KKVAILGG-GL--MGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 148 ~kI~VIG~-G~--mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
++|.|.|+ |. ||.+||..|++.|.+|++.+++.+++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 46777785 65 999999999999999999999987653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.93 E-value=0.027 Score=44.93 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALIL---SNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~~~ 183 (521)
++|+|||+|.+|.-+|..+.. +|.+|+++++.+.-+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL 59 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL 59 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence 589999999999999976654 456899999876544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.92 E-value=0.22 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...+..++..|. .|+..|+++++++.+.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 479999999999999988888775 7999999999887754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.90 E-value=0.67 Score=38.60 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=33.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+ |.+|...++.+...|. +|++.+.++++++.+.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 47999995 9999988888877784 9999999999887654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.90 E-value=0.14 Score=40.51 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=53.8
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+|||+ +..|..+...|.+.||+|+.++.+.+.+. .+....++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~-----------------------------G~~~y~sl~~ 52 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIE-----------------------------GLKCYRSVRE 52 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET-----------------------------TEECBSSGGG
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccccc-----------------------------Cccccccchh
Confidence 68999996 67899999999999999888875543221 1223345555
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+ ...|+++.++|.+. -.++++++.+. ....++.
T Consensus 53 lp~~~D~vvi~vp~~~--~~~~l~~~~~~-g~k~v~~ 86 (116)
T d1y81a1 53 LPKDVDVIVFVVPPKV--GLQVAKEAVEA-GFKKLWF 86 (116)
T ss_dssp SCTTCCEEEECSCHHH--HHHHHHHHHHT-TCCEEEE
T ss_pred ccccceEEEEEeCHHH--HHHHHHHHHhc-CCceEEe
Confidence 5 45699999998653 34666665543 3334543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.89 E-value=0.4 Score=38.22 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+.|.|+|.|.+|..++..| .|++|.++|.+++..+..
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~ 37 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV 37 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence 3588999999999999987 578899999999887653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.85 E-value=0.12 Score=43.29 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|.+|++.+.++++++.++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 4799999999999888888888999999999999887643
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.83 E-value=0.035 Score=46.14 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=56.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 222 (521)
+||||||+ |..|.-+.+.|.+.+| ++..+.-+... |+.- ......+.. ..+.+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~------------------Gk~i----~~~~~~~~~~~~~~~ 60 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA------------------GQRM----GFAESSLRVGDVDSF 60 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT------------------TCEE----EETTEEEECEEGGGC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC------------------Ccce----eeccccchhccchhh
Confidence 58999999 9999999999986654 66655433221 1100 000011111 11234
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
.+.++|+|+.|+|.... .++...+ ...++++.+++|...
T Consensus 61 ~~~~~d~vf~a~p~~~s--~~~~~~~---~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 61 DFSSVGLAFFAAAAEVS--RAHAERA---RAAGCSVIDLSGALE 99 (144)
T ss_dssp CGGGCSEEEECSCHHHH--HHHHHHH---HHTTCEEEETTCTTT
T ss_pred hhccceEEEecCCcchh--hhhcccc---ccCCceEEeechhhc
Confidence 57899999999986532 3443333 346788999988764
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=91.82 E-value=0.33 Score=44.45 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=32.3
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++.|.|+ +-+|.++|..|++.|++|++.|++++.+++.
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~ 45 (276)
T d1bdba_ 7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL 45 (276)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4445565 8899999999999999999999999887654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.81 E-value=0.12 Score=46.60 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=33.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+++.|.|+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 46 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA 46 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 34556676 67999999999999999999999998876643
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.053 Score=49.15 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|||+|.+|+.++..|++.|. +++++|.|
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 489999999999999999999998 89999976
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.66 E-value=0.033 Score=49.62 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~ 181 (521)
.||+|||+|.-|-+-|..|+++| ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 49999999999999999999988 47999998764
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.57 E-value=0.32 Score=39.68 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=57.5
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+|||+ +..|..+...|..+||+|+.++...+.+. -+....++++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~-----------------------------G~~~~~sl~d 70 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVL-----------------------------GRKCYPSVLD 70 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET-----------------------------TEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccC-----------------------------CCcccccccc
Confidence 68999997 57899999999999999988876543211 1223345555
Q ss_pred cc-CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 224 FK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 224 ~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+. ..|+|+.++|.. .-.++++++.+. ....++. .+++..
T Consensus 71 lp~~iD~v~i~vp~~--~~~~~~~e~~~~-g~k~v~~-~~G~~~ 110 (139)
T d2d59a1 71 IPDKIEVVDLFVKPK--LTMEYVEQAIKK-GAKVVWF-QYNTYN 110 (139)
T ss_dssp CSSCCSEEEECSCHH--HHHHHHHHHHHH-TCSEEEE-CTTCCC
T ss_pred cCccceEEEEEeCHH--HHHHHHHHHHHh-CCCEEEE-eccccC
Confidence 54 689999999855 445777776654 3344443 444443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=91.46 E-value=0.07 Score=45.67 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=34.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (521)
.+|..||+|+ | ..+..|++.|++|+.+|++++.++.+.++
T Consensus 22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~ 61 (201)
T d1pjza_ 22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE 61 (201)
T ss_dssp CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence 4899999998 4 47778899999999999999999987654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.44 E-value=0.054 Score=45.60 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=29.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (521)
+||.|||+|..|..+|..|.+.|. +|+++|.++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 599999999999999999998874 789999876
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.32 E-value=0.072 Score=48.66 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
-+||.|+|+ |.+|+.++..|.++|++|++++|+...
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 368999997 999999999999999999999997543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.25 E-value=0.053 Score=51.12 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.6
Q ss_pred ceEEEEEeCChhhHHHHHHHH-----hCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALI-----LSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la-----~~G~~V~l~d~~~~ 181 (521)
.--|.|||+|..|..+|..|+ ++|++|+++|+++.
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 346999999999999999996 57999999998753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=91.21 E-value=0.66 Score=41.33 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=33.8
Q ss_pred eEEEEE-eC-ChhhHHHHHHHHhCCCc-------EEEEeCCHHHHHHHHH
Q 009963 148 KKVAIL-GG-GLMGSGIATALILSNYP-------VILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VI-G~-G~mG~~iA~~la~~G~~-------V~l~d~~~~~~~~~~~ 188 (521)
|+|.+| |+ +-+|.+||..|++.|++ |++++++++.++...+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence 466655 66 67999999999999998 9999999998877543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.15 E-value=0.12 Score=46.18 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+++.|.|+ +-+|.+||..|++.|++|++.|++++.+++
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 45666676 779999999999999999999999876653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.26 Score=44.29 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=30.0
Q ss_pred eEEEEEeCCh---hhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGL---MGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~---mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|.|++. +|.+||..|++.|++|++.+++++..+.
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~ 46 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR 46 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4566667643 7799999999999999999999664443
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.89 E-value=0.061 Score=48.69 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=28.3
Q ss_pred eEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|||.|| |+ +-+|.+||..|++.|++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 355555 65 77999999999999999999999764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.85 E-value=0.75 Score=41.64 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=29.4
Q ss_pred EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCC-HHHHHH
Q 009963 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEA 185 (521)
Q Consensus 149 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~ 185 (521)
|+++| | .+-+|.+||..|++.|++|++.+++ ++.++.
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~ 58 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEE 58 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHH
Confidence 55555 5 5899999999999999999999987 444444
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.82 E-value=0.091 Score=49.08 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=31.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
-.|.|||+|.-|...|..|.+.|++|+++|.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4799999999999999999999999999998764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.81 E-value=0.18 Score=46.02 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred EEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHH-HHHH
Q 009963 149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEK-FLEA 185 (521)
Q Consensus 149 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~ 185 (521)
|++|| | ++-+|.++|..|++.|++|++.+++.+ .++.
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~ 47 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANS 47 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHH
Confidence 55555 4 588999999999999999999999854 4444
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.78 E-value=0.092 Score=48.29 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=31.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
-+||.|+|+ |.+|+.++..|.++|++|++.+|++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 368999996 99999999999999999999998753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.63 E-value=0.54 Score=42.18 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=30.5
Q ss_pred eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+++.|.|++ -+|.+||..|++.|++|++.+++++..+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE 49 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 456666864 49999999999999999999998765443
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.60 E-value=0.1 Score=42.29 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=53.6
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGG----GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
++|+|||+ |.+|..+...|...| .+|+.++.+.+.+. .+....+++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~-----------------------------G~~~y~sl~ 59 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ-----------------------------GVKAYKSVK 59 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET-----------------------------TEECBSSTT
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC-----------------------------CeEeecchh
Confidence 68999997 888999999887665 58888877643321 122344555
Q ss_pred ccc-CCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 223 ~~~-~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
++. ..|+++.++|... -.++++++.+.=-+..++.
T Consensus 60 dlp~~vDlvvi~vp~~~--~~~~~~~~~~~g~~~~vi~ 95 (129)
T d2csua1 60 DIPDEIDLAIIVVPKRF--VKDTLIQCGEKGVKGVVII 95 (129)
T ss_dssp SCSSCCSEEEECSCHHH--HHHHHHHHHHHTCCEEEEC
T ss_pred hcCCCCceEEEecChHH--hHHHHHHHHHcCCCEEEEe
Confidence 553 5899999998553 3467777655433444443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.30 E-value=0.45 Score=42.66 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=28.4
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++++.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~ 41 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 41 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 45555 55 679999999999999999999998653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.19 E-value=0.096 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..|.|||+|..|..-|..++++|++|+++|.++..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35899999999999999999999999999998653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.05 E-value=0.065 Score=45.63 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=33.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|.|+ |.+|....+.+...|.+|+..+.++++++.++
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~ 69 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL 69 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred CEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence 47999996 99998888888888999999999988776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.00 E-value=0.21 Score=43.63 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=31.6
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEE--EeCCHHHHH
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNYPVIL--KEVNEKFLE 184 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l--~d~~~~~~~ 184 (521)
.|++|.|.|+ |.+|+.++..|+++|++|.+ ..++++...
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence 4789999995 99999999999999987544 557776543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.95 E-value=0.21 Score=45.29 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=30.2
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIG 188 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~ 188 (521)
|+++| |+ +-+|..||..|++.|++|++. +++++.++...+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~ 49 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA 49 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHH
Confidence 45444 55 779999999999999999985 667766666443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.85 E-value=0.087 Score=47.89 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=30.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|||.|+|+ |.+|+.++..|.+.|++|+..|+++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 57999998 9999999999999999999999864
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=89.58 E-value=0.072 Score=45.77 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=55.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
|.||+|||+ |..|.-+.+.|.++ .+++.-.-. +.+.. .+ +.+....... .+... .......+. .
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~-aG-k~~~~~~~~~--~~~~~--------~~~~~~~~~~~ 68 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSND-AG-KLISDLHPQL--KGIVD--------LPLQPMSDVRD 68 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTT-TT-CBHHHHCGGG--TTTCC--------CBEEEESCGGG
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccc-cc-cccccccccc--ccccc--------cccccchhhhh
Confidence 579999997 99999999999987 556654322 11100 00 0000000000 00000 001111122 2
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
...++|+|+.|+|.... .++...+ ...++.+.++++...+.
T Consensus 69 ~~~~~dvvf~alp~~~s--~~~~~~~---~~~~~~vIDlSadfRl~ 109 (179)
T d2g17a1 69 FSADVDVVFLATAHEVS--HDLAPQF---LQAGCVVFDLSGAFRVN 109 (179)
T ss_dssp TCTTCCEEEECSCHHHH--HHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred hhcccceeeccccchhH--HHHhhhh---hhcCceeeccccccccc
Confidence 35789999999986533 3333333 34677888888765443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.37 E-value=0.11 Score=49.22 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
++|.|+|+ |.+|+.++..|+++|++|++.-|+++..
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 68999987 9999999999999999999999986643
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=89.17 E-value=0.17 Score=45.77 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 149 KVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 149 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
.+.|.| .+-+|.++|..|++.|++|++.|++++..+
T Consensus 7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE 43 (248)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 344555 488999999999999999999999987643
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.17 E-value=0.32 Score=43.77 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.5
Q ss_pred EEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 150 VAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 150 I~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
|+|| |+ +-+|.++|..|+++|++|++.+++.+..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5555 44 6799999999999999999999986654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.07 E-value=0.11 Score=43.42 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.||.|||+|..|..+|..|. .+.+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 48999999999999999885 578999998753
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.91 E-value=0.29 Score=41.50 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=28.7
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
++|.|||-+ ..|..+|..|++.|..|+.++.+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 689999976 56999999999999999999865
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.84 E-value=0.16 Score=48.31 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=30.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-|||.|.|+ |.+|+.|+..|.++|++|+++|+..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 468999986 9999999999999999999998753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.76 E-value=0.051 Score=49.06 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=29.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+++.|.|+ +-+|.+||..|++.|++|++.+++.+..
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~ 44 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP 44 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence 34555566 6799999999999999999999987543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.75 E-value=0.15 Score=44.04 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~ 180 (521)
|||.|||+|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 5899999999999999999876 45899998764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=88.66 E-value=0.34 Score=43.50 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=30.8
Q ss_pred EEEEE--eCChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHH
Q 009963 149 KVAIL--GGGLMGSGIATALILSNYPVILKE-VNEKFLEAGIG 188 (521)
Q Consensus 149 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~ 188 (521)
+|++| |++-+|.++|..|++.|++|++.+ ++++.++...+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~ 44 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK 44 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 36666 458899999999999999999865 56766665443
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.60 E-value=0.11 Score=44.05 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence 5899999999999999999999999887766553
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.51 E-value=0.18 Score=43.36 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=30.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
-.+|.|||+|.-|..-|..+++.|.+|+++|..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 368999999999999999999999999999854
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=88.25 E-value=0.46 Score=38.52 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred eEEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+|||+ +..|..+...|.+.||++..+..++..-+ ........++.+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---------------------------i~g~~~~~~l~~ 66 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---------------------------LFGEEAVASLLD 66 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---------------------------ETTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---------------------------eeceecccchhh
Confidence 57999998 78999999999999999999988753100 011223445555
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+ ...|+|+.++|... -.+++++..+. ...+++.
T Consensus 67 i~~~iD~v~v~~p~~~--v~~~v~~~~~~-g~k~i~~ 100 (136)
T d1iuka_ 67 LKEPVDILDVFRPPSA--LMDHLPEVLAL-RPGLVWL 100 (136)
T ss_dssp CCSCCSEEEECSCHHH--HTTTHHHHHHH-CCSCEEE
T ss_pred ccCCCceEEEeccHHH--HHHHHHHHHhh-CCCeEEE
Confidence 5 45799999997543 34566665544 3445554
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.16 Score=49.78 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899999863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.21 E-value=0.37 Score=41.64 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=33.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 379999999999777777766676 7999999999988754
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.18 Score=47.49 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=28.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
|||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 57999987 99999999999999999999986
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=88.20 E-value=0.18 Score=43.10 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=30.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-++|.|||+|.-|..-|..+++.|.+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 3689999999999999999999999999998653
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.95 E-value=0.23 Score=41.36 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=54.1
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-cccCccc
Q 009963 149 KVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYES 223 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 223 (521)
||+|||+ |..|.-+.+.|.++.++ +....-+.. .|..-. .....+. .......
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------------------~G~~~~----~~~~~~~~~~~~~~~ 60 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------------------AGKSLK----FKDQDITIEETTETA 60 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------------------TTCEEE----ETTEEEEEEECCTTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------------------cccccc----ccCCcccccccchhh
Confidence 7999999 99999999999888653 333332211 111000 0000111 1111245
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
..++|+++.+.|..... +... +....++.+++++|....
T Consensus 61 ~~~~d~~f~~~~~~~s~--~~~~---~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 61 FEGVDIALFSAGSSTSA--KYAP---YAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp TTTCSEEEECSCHHHHH--HHHH---HHHHTTCEEEECSSTTTT
T ss_pred hhhhhhhhhccCccchh--hHHh---hhccccceehhcChhhhc
Confidence 68899999999865432 2222 233568899999987653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.82 E-value=0.28 Score=45.27 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~~ 223 (521)
++|.|||+|. ++++..+.+. ..+|+++|+|++-++-+++...... ...+.. |+... .| .+-
T Consensus 80 k~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~------------rv~i~~~Da~~~ 144 (285)
T d2o07a1 80 RKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSS------------KLTLHVGDGFEF 144 (285)
T ss_dssp CEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCT------------TEEEEESCHHHH
T ss_pred CeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCCC------------CceEEEccHHHH
Confidence 6899999985 3566666665 3589999999999888765432211 111111 11111 11 111
Q ss_pred c----cCCCEEEEecccchh-----hHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 F----KDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~----~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+ +.-|+||.-++.... ..++.|+.+.+.++++.|++.++.+
T Consensus 145 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 145 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 1 346888866543222 2446688899999999999888654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.67 E-value=0.22 Score=43.31 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=28.7
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
|.|||+|.-|...|..+++.|.+|.++|.+
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999986
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.66 E-value=1.1 Score=39.51 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF-- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 224 (521)
++|.=||+|+ | .++..|++.|.+|+.+|.+++.++.+.++... .+. ++.. ..+.+.+
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIAF 102 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCCC
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhccc
Confidence 5899999997 4 55667889999999999999998887654321 110 1111 1122211
Q ss_pred -cCCCEEEEe--cc--cchhhHHHHHHHHHhhCCCCceEE
Q 009963 225 -KDVDMVIEA--II--ENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 225 -~~aDlVIea--v~--e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
...|+|+-+ +. -+.+-.+.+++++.++++|+.+++
T Consensus 103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 346887753 11 111224578999999999887654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=87.63 E-value=0.21 Score=46.09 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-|.|||+|.-|.+.|..++++|.+|+++|..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 48999999999999999999999999999764
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.62 E-value=0.18 Score=46.13 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHh-CCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALIL-SNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~ 181 (521)
-|.|||+|.-|...|..|++ .|++|+++|.++.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=87.61 E-value=0.22 Score=42.48 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=55.2
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-cccCccc
Q 009963 147 VKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 223 (521)
|.||+|||+ |..|.-+.+.|.++- +++..+--+... -+ .+..... ....... ...+.+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G~---~i~~~~p--------------~~~~~~~~~~~~~~~ 62 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GK---KLEEIFP--------------STLENSILSEFDPEK 62 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TS---BHHHHCG--------------GGCCCCBCBCCCHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-CC---cccccCc--------------hhhccccccccCHhH
Confidence 579999998 999999999998864 355544322211 00 1110000 0001110 1122233
Q ss_pred -ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
..++|+|+.|+|.... +++. .. ..++.+++++|...++
T Consensus 63 ~~~~~dvvf~a~p~~~s--~~~~----~~-~~~~~VIDlSadfRl~ 101 (176)
T d1vkna1 63 VSKNCDVLFTALPAGAS--YDLV----RE-LKGVKIIDLGADFRFD 101 (176)
T ss_dssp HHHHCSEEEECCSTTHH--HHHH----TT-CCSCEEEESSSTTTCS
T ss_pred hccccceEEEccccHHH--HHHH----Hh-hccceEEecCcccccc
Confidence 4689999999998753 2222 22 2577888999877554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.2 Score=44.40 Aligned_cols=39 Identities=13% Similarity=-0.101 Sum_probs=33.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
.+|-.+|+|. | ..+..|++.|++|+.+|.+++.++.+.+
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 4899999998 4 6688889999999999999999987654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=87.36 E-value=0.12 Score=46.05 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.5
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
|++|| |+ +-+|.+||..|++.|++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45555 55 889999999999999999999998653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=87.35 E-value=0.22 Score=46.84 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=32.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
+||.|.|+ |.+|+.++..|.++|++|..+|++...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 79999986 999999999999999999999997654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.21 E-value=0.16 Score=45.36 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=30.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.||.|.|+ +-+|.++|..|+++|++|++.|++++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 57888877 89999999999999999999999864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.04 E-value=0.38 Score=44.44 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=64.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc---
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--- 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 221 (521)
.++|.|||+|.. +++..+++. +. +|+++|+|++-++.+++..... ....+..++ ++...+..
T Consensus 81 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~r~----------~i~~~Da~~~l 147 (290)
T d1xj5a_ 81 PKKVLVIGGGDG--GVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDPRV----------NLVIGDGVAFL 147 (290)
T ss_dssp CCEEEEETCSSS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGSTTE----------EEEESCHHHHH
T ss_pred CcceEEecCCch--HHHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCCCc----------EEEEccHHHHH
Confidence 368999999964 556666665 44 7999999999988876543211 111111111 11111111
Q ss_pred ccc--cCCCEEEEecccch-----hhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 222 ESF--KDVDMVIEAIIENV-----SLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 222 ~~~--~~aDlVIeav~e~~-----~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
... +.-|+||.-+++.. -..++.|+.+.+.++++.|++.|+.+.
T Consensus 148 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 148 KNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp HTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred hhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 111 24788886554321 134678899999999999999887653
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.49 E-value=0.27 Score=46.20 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
+||.|.|+ |.+|+.|+..|+++|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 58999977 99999999999999999999984
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=86.39 E-value=0.57 Score=43.26 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=61.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
++|.|||+|.- +++..+++. + -+|+++|+|++-++-+.+.+...- ...+..++ ++...+-.+-+
T Consensus 91 k~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv----------~v~~~Da~~~l~ 157 (295)
T d1inla_ 91 KKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRA----------EIVIANGAEYVR 157 (295)
T ss_dssp CEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTE----------EEEESCHHHHGG
T ss_pred ceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCc----------EEEhhhHHHHHh
Confidence 68999999863 556666664 3 479999999999887765432111 11111110 11111111111
Q ss_pred ---cCCCEEEEecccch------hhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 ---KDVDMVIEAIIENV------SLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ---~~aDlVIeav~e~~------~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
..-|+||.-.++.. -.-++.|+.+.+.++++.|++.++.+
T Consensus 158 ~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 158 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 34688886554321 12467889999999999999988765
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.35 E-value=0.27 Score=46.56 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=28.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
-|.|||+|.-|+.+|..|+++|++|.++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 478999999999999999999999999986
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=86.31 E-value=0.24 Score=46.33 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc-c-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-E- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~- 222 (521)
++|.|||+|.- +++..+++. ..+|+++|++++-++.+.+.+...- .+.... .++... .|. +
T Consensus 79 k~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~-----~~~~~d-------~rv~i~~~Da~~~ 144 (312)
T d1uira_ 79 KRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH-----QGAFDD-------PRAVLVIDDARAY 144 (312)
T ss_dssp CEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHH-----TTGGGC-------TTEEEEESCHHHH
T ss_pred ceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccc-----cCccCC-------CceEEEEchHHHH
Confidence 68999999953 445555554 3489999999999887765432211 111100 111111 111 1
Q ss_pred ---cccCCCEEEEecccc-----h---hhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 223 ---SFKDVDMVIEAIIEN-----V---SLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 223 ---~~~~aDlVIeav~e~-----~---~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.-..-|+||.-+++. + -.-++.|+.+.+.++++.|++.++++
T Consensus 145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred hhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 113578888655321 1 11357889999999999998877644
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.27 Score=45.66 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=28.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
+||.|.|+ |.+|+.++..|.+.|++|+.+|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 68999987 99999999999999999999986
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.14 E-value=0.32 Score=42.54 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=29.2
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|.|||+|.-|..-|..+++.|.+|+++|..+
T Consensus 8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 8999999999999999999999999999764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=85.94 E-value=0.26 Score=46.43 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=28.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
-|.|||+|.-|..+|..|+++|++|++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 388999999999999999999999999986
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.87 E-value=0.28 Score=43.17 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-|.|||+|.-|.+-|..+++.|.+|+++|.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 38999999999999999999999999999764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=85.83 E-value=0.89 Score=40.93 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=58.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~ 224 (521)
++|.=+|+|+ | .++..+++.|.+|+.+|+|++.++.+++++.. .| +. .++. ..+.. .-
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~~-~~d~~~~~~~ 182 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRFL-EGSLEAALPF 182 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEEE-ESCHHHHGGG
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeEE-eccccccccc
Confidence 4788899997 4 35566788899999999999999988765422 12 11 0111 11211 13
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
...|+|+-.+.. .....++.++.+.++|+..++
T Consensus 183 ~~fD~V~ani~~--~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 183 GPFDLLVANLYA--ELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp CCEEEEEEECCH--HHHHHHHHHHHHHEEEEEEEE
T ss_pred cccchhhhcccc--ccHHHHHHHHHHhcCCCcEEE
Confidence 467888866543 344567778888888776554
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=85.83 E-value=0.24 Score=46.10 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
-|.|||+|.-|...|..++++|++|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38999999999999999999999999999764
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=85.67 E-value=0.33 Score=40.80 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=28.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
-|.|||+|..|..-|..+++.|.+|++++.+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3889999999999999999999999999864
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.48 E-value=0.29 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=29.0
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
|.|||+|.-|...|..+++.|.+|+++|.++
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 7899999999999999999999999999763
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=85.47 E-value=0.35 Score=44.30 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=62.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~~ 223 (521)
++|.|||+|. ++++..+.+. + -+|+++|+|++-++-+.+..... .+.... .|+... .| .+-
T Consensus 77 ~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~d-------~r~~i~~~D~~~~ 141 (274)
T d1iy9a_ 77 EHVLVVGGGD--GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLDD-------PRVDVQVDDGFMH 141 (274)
T ss_dssp CEEEEESCTT--CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTTS-------TTEEEEESCSHHH
T ss_pred ceEEecCCCC--cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------cccccC-------CCeEEEechHHHH
Confidence 5899999985 3455555554 4 48999999999988766543211 111110 122111 11 111
Q ss_pred c----cCCCEEEEecccchh-----hHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 F----KDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~----~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+ +.-|+||.-.++... .-++.|+.+.+.++++.+++.++.+
T Consensus 142 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 142 IAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp HHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred HhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 1 346899865543211 2468899999999999999988754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.34 E-value=0.19 Score=47.47 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=28.1
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
+||||.|.|+ |.+|+.++..|.++|++|.++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 3789999985 99999999999999988665544
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=85.06 E-value=0.33 Score=46.06 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=28.1
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
-|.|||+|.-|+.+|..|+++|++|+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 478999999999999999999999999996
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=85.06 E-value=0.71 Score=41.79 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=29.4
Q ss_pred EEEE-e-CChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHH
Q 009963 150 VAIL-G-GGLMGSGIATALILSNYPVILKEV-NEKFLEAGI 187 (521)
Q Consensus 150 I~VI-G-~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~ 187 (521)
|+|| | ++-+|.+||..|++.|++|++.++ +++.++...
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 7777 4 478999999999999999998765 455555443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.00 E-value=0.18 Score=45.66 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=30.5
Q ss_pred EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 150 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+.|-|+ +-+|.++|..|++.|++|++.|++.+.++..
T Consensus 3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~ 40 (252)
T d1zmta1 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL 40 (252)
T ss_dssp EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 345566 5699999999999999999999998876653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.95 E-value=0.32 Score=46.63 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=28.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEe
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKE 177 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d 177 (521)
+||.|.|+ |.+|+.++..|++.|++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 58999987 9999999999999999999998
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.65 E-value=0.36 Score=46.37 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHh------CCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALIL------SNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~------~G~~V~l~d~~~~ 181 (521)
-|.|||+|.-|.+-|..|++ +|++|.++|+..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 38999999999999999997 8999999998753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.22 E-value=0.31 Score=39.50 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHh----CCCcEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALIL----SNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~----~G~~V~l~d~~~~~~ 183 (521)
++|.|||+|..|.-+|..|++ .|.+|++++.++.-+
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l 77 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM 77 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence 489999999999999988863 589999999876543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=84.08 E-value=0.95 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=24.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCC-CcEEEEe
Q 009963 148 KKVAILGG-GLMGSGIATALILSN-YPVILKE 177 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d 177 (521)
.||+|||+ |..|.-+.+.|.++- +++....
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 58999998 999999999998763 4655553
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.01 E-value=0.42 Score=44.11 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=30.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|-|.|+ |.+|+.++..|+++|++|+.+|+..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 57889987 9999999999999999999999864
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.46 Score=41.17 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=28.4
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
|.|||+|..|...|..+++.|.+|.++|.+
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999875
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.95 E-value=1.5 Score=40.38 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=27.7
Q ss_pred EEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|++|| |+ +-+|.++|..|++.|++|++.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 56666 55 77999999999999999999988654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.85 E-value=0.48 Score=41.01 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=28.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
|.|||+|..|...|..+++.|.+|++++..
T Consensus 6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~ 35 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 789999999999999999999999999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.80 E-value=0.82 Score=38.24 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~ 69 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV 69 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccc
Confidence 47999996 9999988888888899999999998877654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.77 E-value=0.36 Score=42.06 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
.|.|||+|..|...|..+++.|.+|+++|.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4899999999999999999999999999975
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.74 E-value=0.88 Score=38.22 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=33.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|.|+ |.+|...++.+...|.+|+..+.++++.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l 66 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 66 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence 47889886 9999999998888899999999998877653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=83.64 E-value=0.13 Score=43.86 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
+|.|||+|..|..+|..|.+.|.+|.+..++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 5999999999999999999999876665543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=83.40 E-value=0.95 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.2
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~ 184 (521)
.|.|.|+ +-+|..+|..|++.|.+|++.+++.+..+
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~ 43 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT 43 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence 4555666 56999999999999999988877665443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.12 E-value=0.3 Score=45.62 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=59.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-C-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D-YE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~-~~- 222 (521)
++|.|||+|. ++++..+++. + -+|+++|+|++-++-+.+..... ....+. .+++... | .+
T Consensus 108 k~VLIiGgG~--G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~-~~~~~d------------prv~i~i~Da~~~ 172 (312)
T d2b2ca1 108 KRVLIIGGGD--GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM-SCGFSH------------PKLDLFCGDGFEF 172 (312)
T ss_dssp CEEEEESCTT--SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT-SGGGGC------------TTEEEECSCHHHH
T ss_pred CeEEEeCCCc--hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh-ccccCC------------CCeEEEEchHHHH
Confidence 5899999995 3556666664 3 48999999999888765432110 000000 1111111 1 11
Q ss_pred ---cccCCCEEEEecccchh-----hHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 223 ---SFKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 223 ---~~~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
.-..-|+||.=++.... .-++.|+.+.+.++++.|+++++.+.
T Consensus 173 l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp HHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred HHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 12346899865543221 34567888999999999999887554
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.01 E-value=0.62 Score=36.76 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=31.0
Q ss_pred cceEEEEEeCCh-----------hhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 146 RVKKVAILGGGL-----------MGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 146 ~~~kI~VIG~G~-----------mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..+||.|||+|. .+...+..|.+.|+++++++-||+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 357999999984 4566677888999999999999975
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.31 E-value=0.49 Score=43.34 Aligned_cols=105 Identities=16% Similarity=0.323 Sum_probs=60.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHhhhccccccc-C-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVR---ANLQSRVKKGKMTQEKFEKTISLLTGVL-D-Y 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~---~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~-~ 221 (521)
++|.|||+|.- +++..+++.+. +|+++|+|++-++-+++... ..++... .. .-.|++... | .
T Consensus 74 ~~vLiiG~G~G--~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~-~~---------~d~rv~i~~~Da~ 141 (276)
T d1mjfa_ 74 KRVLVIGGGDG--GTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML-NG---------KHEKAKLTIGDGF 141 (276)
T ss_dssp CEEEEEECTTS--HHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH-TT---------CCSSEEEEESCHH
T ss_pred ceEEEecCCch--HHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh-cc---------CCCCceEEEChHH
Confidence 58999999864 34455555543 79999999998887654321 0000000 00 001221111 1 0
Q ss_pred ---ccccCCCEEEEecccchh-----hHHHHHHHHHhhCCCCceEEecCCc
Q 009963 222 ---ESFKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 222 ---~~~~~aDlVIeav~e~~~-----~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
..-+.-|+||.=++.... ..++.|+.+.+.++++.++++|+.+
T Consensus 142 ~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 142 EFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp HHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 112567999875544322 1357889999999999999887644
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=0.48 Score=44.22 Aligned_cols=33 Identities=33% Similarity=0.272 Sum_probs=29.1
Q ss_pred eEEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVA-ILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+||+ |.|+ |.+|+.++..|.++||+|+.+|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5884 7766 9999999999999999999999964
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=81.93 E-value=1.3 Score=38.38 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF-- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 224 (521)
++|.=||+|+ | ..+..+++.|.+|+.+|.+++.++.+.+++.. .+. .++.+. .+.+.+
T Consensus 17 ~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-------~~~----------~~i~~~~~d~~~l~~ 77 (231)
T d1vl5a_ 17 EEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIEG-------NGH----------QQVEYVQGDAEQMPF 77 (231)
T ss_dssp CEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TTC----------CSEEEEECCC-CCCS
T ss_pred CEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-------ccc----------ccccccccccccccc
Confidence 5899999995 3 44566788899999999999998887654321 111 122221 122221
Q ss_pred --cCCCEEEEe-cccchhhHHHHHHHHHhhCCCCceEE
Q 009963 225 --KDVDMVIEA-IIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 225 --~~aDlVIea-v~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
...|+|+-. +.+...-...+++++...++|+..++
T Consensus 78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115 (231)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence 346888744 22222224578999999999887443
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=81.86 E-value=0.53 Score=44.64 Aligned_cols=30 Identities=30% Similarity=0.240 Sum_probs=27.9
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
+.|||+|.-|+-+|..|+++|++|.++++=
T Consensus 5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 679999999999999999999999999864
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.85 E-value=0.57 Score=41.56 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=30.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|+|.|.|+ |-+|.++|..|++.|++|.+.|+++.
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57888887 77999999999999999999998653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=81.72 E-value=1.4 Score=39.24 Aligned_cols=30 Identities=37% Similarity=0.209 Sum_probs=27.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEe
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKE 177 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d 177 (521)
++|+|=|.|.+|...|..|.+.|..|+.++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence 589999999999999999999999887554
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.60 E-value=0.49 Score=41.50 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=28.1
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
|.|||+|.-|..-|..+++.|.+|.++|..
T Consensus 6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~ 35 (235)
T d1h6va1 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV 35 (235)
T ss_dssp EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 789999999999999999999999999953
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=81.53 E-value=0.56 Score=43.26 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=27.5
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
||.|.|+ |.+|+.++..|.++|++|+.+|.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 7888877 99999999999999999999984
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=81.52 E-value=4 Score=33.67 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=32.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.+|.|+|+ |.+|....+.+...|.+|+..++++++.+.++
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~ 70 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 70 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence 47999966 45887777777778999999999999887643
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.44 E-value=0.5 Score=44.14 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=29.1
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEV 178 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~ 178 (521)
.++|-|.|+ |.+|+.++..|.+.|++|+.+|+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 467888877 99999999999999999999986
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=81.20 E-value=0.61 Score=43.43 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-~V~l~d~~~~~ 182 (521)
|||.|.|+ |.+|+.++..|++.|+ +|+.+|+....
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~ 37 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA 37 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence 58999987 9999999999999994 89999986543
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.06 E-value=7.7 Score=31.68 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=44.3
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||++||-| ++..+++..+..-|.+|+++.. +++.++...+. .......+..+.+.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~ 66 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQN------------------AAESGGSFELLHDP 66 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH------------------HHHHTCEEEEESCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHh------------------hhcccceEEEecCH
Confidence 489999984 4667788888888999999854 34433332211 01112345556665
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.++|+|..-.
T Consensus 67 ~ea~~~adviy~~~ 80 (163)
T d1pvva2 67 VKAVKDADVIYTDV 80 (163)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhhhccEEeecc
Confidence 5689999998654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.53 E-value=0.63 Score=43.09 Aligned_cols=33 Identities=27% Similarity=0.136 Sum_probs=28.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+++-|.|+ |.+|+.++..|++.||+|+.+|+..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 35666676 9999999999999999999999843
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.28 E-value=0.46 Score=44.05 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.-|.|||+|.-|..-|..++++|.+|++++..+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 459999999999999999999999999999754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.19 E-value=2.5 Score=40.59 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=61.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-----C-
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-----D- 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-----~- 220 (521)
.+|.=||+|. |..........|. +|+.+|.++..++.+.++....-......|.-.. ...+.... +
T Consensus 218 d~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~------~~~~~~~~~f~~~~~ 290 (406)
T d1u2za_ 218 DTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN------NVEFSLKKSFVDNNR 290 (406)
T ss_dssp CEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC------CEEEEESSCSTTCHH
T ss_pred CEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc------cceeeeeechhhccc
Confidence 4677889987 4444444445565 7999999999999887765543322221111000 00000001 1
Q ss_pred c-ccccCCCEEEEe-cccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 221 Y-ESFKDVDMVIEA-IIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 221 ~-~~~~~aDlVIea-v~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
. ..+..||+|+.. ..-..++ ...+.++...++||+.|++.
T Consensus 291 ~d~~~~~adVV~inn~~f~~~l-~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 291 VAELIPQCDVILVNNFLFDEDL-NKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp HHHHGGGCSEEEECCTTCCHHH-HHHHHHHHTTCCTTCEEEES
T ss_pred cccccccceEEEEecccCchHH-HHHHHHHHHhcCCCcEEEEe
Confidence 1 246788988853 2222333 46677888899999977764
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.14 E-value=0.83 Score=41.64 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=31.4
Q ss_pred eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+++.|.|++ -+|.+||..|++.|.+|++.+++++....
T Consensus 9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~ 49 (297)
T d1d7oa_ 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIF 49 (297)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhh
Confidence 466777885 49999999999999999999998765443
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=80.06 E-value=0.63 Score=40.16 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=28.2
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
|.|||+|.-|..-|..+++.|.+|.++|..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 789999999999999999999999999964
|