Citrus Sinensis ID: 009990
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.967 | 0.806 | 0.707 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.848 | 0.773 | 0.376 | 6e-97 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.846 | 0.771 | 0.370 | 1e-89 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.851 | 0.757 | 0.362 | 4e-89 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.886 | 0.781 | 0.360 | 2e-88 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.776 | 0.741 | 0.333 | 3e-75 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.865 | 0.773 | 0.312 | 4e-70 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.840 | 0.757 | 0.349 | 1e-69 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.865 | 0.767 | 0.306 | 2e-69 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.823 | 0.744 | 0.317 | 2e-67 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
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Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/582 (70%), Positives = 457/582 (78%), Gaps = 79/582 (13%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWA------- 444
+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 445 -----------------------------------------GLLEFLYEEAPDAMKSIGS 463
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 464 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
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Score = 355 bits (910), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 200/531 (37%), Positives = 291/531 (54%), Gaps = 90/531 (16%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMGK-LKLP-----------------------------VTCHPRGASQLQRVGIGLAVSI 438
HMGK ++P T + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 439 LSVIWAGL---------------------------------------------LEFLYEE 453
++I AG+ LEF Y++
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 454 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 504
APDAM+S+ SA + LG + +++L +++ +T K G+P W+ N+N
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 197/531 (37%), Positives = 284/531 (53%), Gaps = 91/531 (17%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HMG--------------------------KLKLPV----TCHPRGASQLQRVGIGLAVSI 438
HMG KL +P T H RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 439 LSVIWAGL---------------------------------------------LEFLYEE 453
S++ AG+ LEF Y++
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482
Query: 454 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 504
APDAM+S+ SA + A G + ++ L +++ VT + G+P W+A+N+N
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
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Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 193/532 (36%), Positives = 283/532 (53%), Gaps = 89/532 (16%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLP-----------------------------VTCHPRGASQLQRVGIGLAVSIL 439
+G +LP T +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 440 ------------------------------SVIWA----------------GLLEFLYEE 453
SV+W G LEF Y++
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500
Query: 454 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
+PDAM+S+ SA A L LG + +S++ +++ T + GQ W++ N+N+
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNS 550
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 196/543 (36%), Positives = 288/543 (53%), Gaps = 82/543 (15%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLP-----------------------------VTC 419
+V+ ++ TL VQQ +MN + ++P T
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 420 HPRGASQLQRVGIGLAVSIL----------------------SVIWA------------- 444
P+G + LQR+GIGL +S+L S+ W
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVF 494
Query: 445 ---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 501
G +EF Y+E+PDAM+S+ SA A L +G + +S++ +++ T G+ W+
Sbjct: 495 FFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPD 552
Query: 502 NIN 504
++N
Sbjct: 553 DLN 555
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/530 (33%), Positives = 266/530 (50%), Gaps = 126/530 (23%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSNL-----------KVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 GKLKLP-----------------------------VTCHPRGASQLQRVGIGLAVSILSV 441
G ++P T +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 442 IWA----------------------------------------------GLLEFLYEEAP 455
+A G +EF YE++P
Sbjct: 407 TFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSP 466
Query: 456 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNIN 504
D+M+S+ SA+A L LG + +S++ +++ ++ G+ W+ + NIN
Sbjct: 467 DSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNIN 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 169/541 (31%), Positives = 265/541 (48%), Gaps = 91/541 (16%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM-GKLKLP-----------------------------VTCHPRGASQLQRV 430
+Q T++ + G +P T +PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 431 GIGLAVSILSVIWAGL-------------------------------------------- 446
GIGL IL +I A +
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLE 474
Query: 447 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 503
LEF Y++AP++MKS+G++Y+ + +G F +S L S + +T KK W+ N+
Sbjct: 475 VAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNNL 531
Query: 504 N 504
N
Sbjct: 532 N 532
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 269/530 (50%), Gaps = 93/530 (17%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I +I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLP---------------VTCHPR-------------GASQLQRVGIGLAV 436
TM ++G K+P + + R G S LQR+ IGL +
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVL 418
Query: 437 SI-------------LSV-----------------------------IWAGLLEFLYEEA 454
S LSV I+ G L+F ++
Sbjct: 419 STAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQS 478
Query: 455 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 504
P MK++ + LG F +S L SI+K VT WLA NIN
Sbjct: 479 PKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNIN 526
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 166/541 (30%), Positives = 269/541 (49%), Gaps = 91/541 (16%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G + S+TG W A F+ E+ ERMAY+G+S N+V +M +
Sbjct: 6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ADA+ GRY T I + IYL G+ +TL ++
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFDE
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
K H FFN++ S+ G A T++VY+Q GW +G + + S +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
LYRH+LP GSP T++A+V+VA+ RK SS YE+P A K + I T
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R L++A+L+ + W+LCT+T+VEE K +++++P+ T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 401 QQAYTMNTHMG------------------------------KLKLPVTCHPRGASQLQRV 430
+Q T++ + K +T +PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414
Query: 431 GIG----------------------------------LAVSILSV----IWAGL------ 446
GIG + +SI ++ + GL
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIE 474
Query: 447 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 503
LEF Y++AP++MKS+G++Y + + +G F +SIL S + +T +G W+ N+
Sbjct: 475 IAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQNNL 531
Query: 504 N 504
N
Sbjct: 532 N 532
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 163/514 (31%), Positives = 261/514 (50%), Gaps = 86/514 (16%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI-AHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG++ HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP-- 416
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G +P
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 417 ---------------------------VTCHPRGASQLQRVGIGLAVSI----------- 438
+T + RG + LQR+G G+ S+
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEK 443
Query: 439 -----------LSVIW----------------AGLLEFLYEEAPDAMKSIGSAYAALAGG 471
+SVIW GL E+ Y + PD+M+S+G A+ G
Sbjct: 444 QRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIG 503
Query: 472 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
F ++L + + ++ N +W +++N+
Sbjct: 504 AASFLNNLLITAVDTLAEN--FSGKSWFGKDLNS 535
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.971 | 0.791 | 0.745 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.971 | 0.833 | 0.760 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.971 | 0.789 | 0.716 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.971 | 0.792 | 0.717 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.971 | 0.800 | 0.714 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.967 | 0.788 | 0.713 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.951 | 0.808 | 0.699 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.967 | 0.806 | 0.707 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.967 | 0.804 | 0.710 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.957 | 0.795 | 0.699 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/586 (74%), Positives = 473/586 (80%), Gaps = 81/586 (13%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLP
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA--- 444
VT HPRGASQLQRVGIGLA SILSV WA
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 445 ---------------------------------------------GLLEFLYEEAPDAMK 459
GLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540
Query: 460 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINT
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINT 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/552 (76%), Positives = 465/552 (84%), Gaps = 47/552 (8%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA--- 444
VTC HP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGYC 480
Query: 445 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 493
GLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++
Sbjct: 481 LIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQ 540
Query: 494 GQPNWLAQNINT 505
P+WL+QNINT
Sbjct: 541 MHPSWLSQNINT 552
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/586 (71%), Positives = 465/586 (79%), Gaps = 81/586 (13%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA--- 444
VTC HP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 445 ---------------------------------------------GLLEFLYEEAPDAMK 459
GLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540
Query: 460 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/588 (71%), Positives = 463/588 (78%), Gaps = 83/588 (14%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 414
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LK
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 415 LPVTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA- 444
LPVTC HP GASQLQRVGIGLA+SILSV WA
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 445 -----------------------------------------------GLLEFLYEEAPDA 457
GLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540
Query: 458 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P P+WL+QNINT
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINT 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/582 (71%), Positives = 457/582 (78%), Gaps = 77/582 (13%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTC
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWA------- 444
HP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 445 -----------------------------------------GLLEFLYEEAPDAMKSIGS 463
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 464 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
AYAALAGGLGCF A+I+N+IIKS TGN KGQP+WL+QNINT
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINT 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/583 (71%), Positives = 461/583 (79%), Gaps = 80/583 (13%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTC
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 420 -----------------------------HPRGASQLQRVGIGLAVSILSVIWA------ 444
HP GASQLQR+GIGL VSILSV WA
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 445 ------------------------------------------GLLEFLYEEAPDAMKSIG 462
GLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538
Query: 463 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SAYAALAGGLGCF A+ +NS++KS TGN K Q +WL+QNINT
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINT 581
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/586 (69%), Positives = 455/586 (77%), Gaps = 91/586 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA--- 444
VTC HP GASQLQRVGIGLAVSILSV WA
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 445 ---------------------------------------------GLLEFLYEEAPDAMK 459
GLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530
Query: 460 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/582 (70%), Positives = 457/582 (78%), Gaps = 79/582 (13%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC- 419
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 420 ----------------------------HPRGASQLQRVGIGLAVSILSVIWA------- 444
+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 445 -----------------------------------------GLLEFLYEEAPDAMKSIGS 463
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 464 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/583 (71%), Positives = 459/583 (78%), Gaps = 80/583 (13%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 420 -----------------------------HPRGASQLQRVGIGLAVSILSVIWA------ 444
+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 445 ------------------------------------------GLLEFLYEEAPDAMKSIG 462
GLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540
Query: 463 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SAYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 581
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/586 (69%), Positives = 455/586 (77%), Gaps = 88/586 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 417 VTC-----------------------------HPRGASQLQRVGIGLAVSILSVIWA--- 444
VTC HP GASQLQRVGIGLAVSILSV WA
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 445 ---------------------------------------------GLLEFLYEEAPDAMK 459
GLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533
Query: 460 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 579
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.809 | 0.674 | 0.821 | 6.5e-201 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.694 | 0.633 | 0.436 | 1e-95 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.692 | 0.631 | 0.422 | 3.7e-90 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.723 | 0.637 | 0.422 | 1.1e-88 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.684 | 0.608 | 0.423 | 2.6e-87 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.675 | 0.608 | 0.411 | 5.3e-73 | |
| TAIR|locus:2065568 | 575 | AT2G37900 [Arabidopsis thalian | 0.655 | 0.593 | 0.385 | 7.6e-71 | |
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.726 | 0.615 | 0.35 | 2.2e-69 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.680 | 0.6 | 0.394 | 4.2e-69 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.701 | 0.627 | 0.352 | 9.8e-68 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1825 (647.5 bits), Expect = 6.5e-201, Sum P(2) = 6.5e-201
Identities = 346/421 (82%), Positives = 382/421 (90%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCH 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 P 421
P
Sbjct: 421 P 421
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 1.0e-95, Sum P(3) = 1.0e-95
Identities = 164/376 (43%), Positives = 233/376 (61%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMGK-LKLP 416
Q TM+ HMGK ++P
Sbjct: 356 QGNTMDQHMGKNFEIP 371
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 3.7e-90, Sum P(3) = 3.7e-90
Identities = 159/376 (42%), Positives = 225/376 (59%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMG-KLKLP 416
Q T++ HMG K+P
Sbjct: 356 QGNTLDQHMGPNFKIP 371
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-88, Sum P(3) = 1.1e-88
Identities = 164/388 (42%), Positives = 234/388 (60%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLP 416
+V+ ++ TL VQQ +MN + ++P
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIP 402
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 2.6e-87, Sum P(3) = 2.6e-87
Identities = 156/368 (42%), Positives = 222/368 (60%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLP 416
+G +LP
Sbjct: 381 KIGSFQLP 388
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 153/372 (41%), Positives = 222/372 (59%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLP 416
TM ++G K+P
Sbjct: 359 TMRRNIGSFKIP 370
|
|
| TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 7.6e-71, Sum P(3) = 7.6e-71
Identities = 138/358 (38%), Positives = 209/358 (58%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
+LGGF+ADAYLGRY T+ + TTIYL GL + L TM F+P C + C EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL--VLL--TMSWFIPGLKPCHQ-----EVCVEP 147
Query: 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 148 RKAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAG 206
Query: 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV V
Sbjct: 207 ILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFV 266
Query: 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL-ELKEDVI--NP 358
AA KR+ + S + L+EV K G + HT+ + LDKAA+ E K +
Sbjct: 267 AAIAKRNLPYPSDPSL-LHEV-SKTEFTSGR-LLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G +P
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVP 381
|
|
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 140/400 (35%), Positives = 225/400 (56%)
Query: 27 LSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYF 86
L +Y D + G T T V+ +G+P + S +G W+A + I N+ +A+F
Sbjct: 4 LEIY--NKDTMKKKEGEEETRDGT-VDYYGRP-SIRSNSGQWVAGIVILLNQGLATLAFF 59
Query: 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146
G+ VN+V F+ V+ ++ AD++N V+ + G S++G FL+D+Y GRY T AIF I+
Sbjct: 60 GVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIF 119
Query: 147 LAGLTGITLCATMKVFMPNQDNC-DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205
+ GL+ ++L + M + P C D ++ C ++ Y +Y+ G G +
Sbjct: 120 VIGLSSLSLSSYMFLIRPR--GCGDEVTP----CGSHSMMEITMFYFSIYLIALGYGGYQ 173
Query: 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 265
P +++ GADQFDE FF++FYL++ +G++ + T++ Y + E W F A
Sbjct: 174 PNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWAS 233
Query: 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR--HAAFSSSELIGLYEVP 323
+ I +LF +GTP YR+ P G+PL+R QVLVAA +K A E + +
Sbjct: 234 TGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSSVEAPLRGREEMYDGDSE 293
Query: 324 GKHSAIKGSGKIAHTDDFRCLDKAAL-------ELKEDVINPSPWKLCTVTQVEEVKTLV 376
GK++++ +I HTD+F+ LDKAA + K+D +NP W+LC VTQVEEVK ++
Sbjct: 294 GKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNP--WRLCPVTQVEEVKCIL 351
Query: 377 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
RL+PI CTI+ +V+ T+ +L V+Q MNT + K+P
Sbjct: 352 RLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIP 391
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 145/368 (39%), Positives = 212/368 (57%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMGKLKLP 416
+G ++P
Sbjct: 373 SIGSFEIP 380
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 133/377 (35%), Positives = 209/377 (55%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + C + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPE--CSTTN--VENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM-GKLKLP 416
+Q T++ + G +P
Sbjct: 355 KQGTTLDRKVTGSFSIP 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.7079 | 0.9673 | 0.8060 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 520 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 7e-44 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 5e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 7e-44
Identities = 95/404 (23%), Positives = 153/404 (37%), Gaps = 103/404 (25%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHTR------VAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL------------KL------ 415
++ ++PI A I+ + + T+ TL V+Q TM+ + L L
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 416 --------PVTCHPRGASQLQRVGIGLAVS------------------------------ 437
P+ RG + QR G+G+ +
Sbjct: 268 PILDFLVYPLLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV 327
Query: 438 ------------ILSVIWAGLLEFLYEEAPDAMKSIGSAYAALA 469
I V AG LEF + P +M S+ + +A A
Sbjct: 328 PLFILWSLPELFISGVGLAGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 5e-18
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.91 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.86 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.82 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.82 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.82 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.82 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.81 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.81 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.81 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.81 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.8 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.8 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.8 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.79 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.79 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.79 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.79 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.78 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.78 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.78 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.78 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.78 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.77 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.76 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.76 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.76 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.76 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.75 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.75 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.75 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.75 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.75 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.75 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.74 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.74 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.73 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.73 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.73 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.73 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.73 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.73 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.73 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.72 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.71 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.71 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.7 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.7 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.7 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.69 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.69 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.69 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.68 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.67 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.67 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.67 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.67 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.67 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.66 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.66 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.66 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.65 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.65 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.65 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.64 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.63 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.63 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.63 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.62 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.62 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.61 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.59 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.58 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.58 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.57 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.57 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.57 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.56 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.55 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.54 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.54 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.5 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.49 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.49 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.49 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.47 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.46 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.46 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.46 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.4 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.39 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.39 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.38 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.38 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.38 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.36 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.32 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.29 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.28 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.28 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.28 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.27 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.26 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.25 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.25 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.23 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.22 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.22 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.21 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.21 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.2 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.19 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.18 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.18 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.15 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.15 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.14 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.13 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.12 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.08 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.08 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.07 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.04 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.02 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.99 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.98 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.94 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.91 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.87 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.87 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.86 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.81 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.79 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.78 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.76 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.76 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.75 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.74 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.73 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.73 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.72 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.71 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.7 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.67 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.51 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.49 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.48 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.46 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.44 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.43 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.39 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.37 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.37 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.34 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.33 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.23 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.22 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.21 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.17 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.1 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.08 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.85 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.71 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.68 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.51 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.44 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.41 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.35 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.32 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.14 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.08 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.06 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.03 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.93 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.93 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.76 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.6 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.55 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.39 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.3 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.25 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.8 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.4 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.38 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.23 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 94.68 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.8 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.37 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.92 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.19 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.06 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 86.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 86.35 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.0 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 83.58 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 80.6 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-55 Score=465.99 Aligned_cols=453 Identities=43% Similarity=0.700 Sum_probs=401.7
Q ss_pred CccccCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHH
Q 009990 50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG 126 (520)
Q Consensus 50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G 126 (520)
+..+++..+. .+. ..+.|+....++..+.++++++|++..++..|++.++|.+...+...++.|.+.....++++|
T Consensus 16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~ 94 (571)
T KOG1237|consen 16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA 94 (571)
T ss_pred ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555 443 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccccc-ccCCCCCcchhhHHHHHHHHHHHHHhccccc
Q 009990 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ-LLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (520)
Q Consensus 127 ~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~ 205 (520)
+++|.|+||++++.++.+++.+|.+++.+++..+.+.|. .| ..+ ....|+.++..+...++.++.++++|.|+.+
T Consensus 95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~--~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC--KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc--cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 999999999999999999999999999999888888775 44 111 3346999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccc
Q 009990 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (520)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~ 285 (520)
++..++.+|||++.++.+++.+.++|+|+|+..++|.+++..+..|++++.||.++|.++.+++++++++|+.+.+.|+.
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999987877777888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHhhhcccc---CCCCCCc
Q 009990 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWK 362 (520)
Q Consensus 286 ~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~---~~~~~~~ 362 (520)
.+|.++|+.++.+|++++.++++...+.++.. + . +........++.+.++++|+|++....+. ...++|+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-c-----ccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999887766443 2 1 11122223345677899999998755432 2467899
Q ss_pred cccchhHHHHHHHHhhchhhhHHHHHHHHHhhhhhHHHHHHHhhccccCC-eEeCC------------------------
Q 009990 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV------------------------ 417 (520)
Q Consensus 363 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g-~~ip~------------------------ 417 (520)
+|+.++|||+|++++++|+|.+.+++|.++.|+.|.++.|+.+||+++.+ |.||+
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 99999999999999999999999999999999999999999999999987 89887
Q ss_pred -----CCCCCCCCchhHHHhhHHHHHHHHHHH------------------------------------------hhHhhh
Q 009990 418 -----TCHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEFL 450 (520)
Q Consensus 418 -----~~~~~~~s~~~~i~iG~~~~~~~~~~~------------------------------------------~~~e~~ 450 (520)
++..++.+.++|+++|+++.++++.++ +++||.
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFf 483 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFF 483 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 222356789999999999999998887 778999
Q ss_pred hccCCcchhHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCCCC-CCcccccchhhhhhhhcc
Q 009990 451 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTDTSTGLSRSMAMT 518 (520)
Q Consensus 451 ~~~aP~~~rg~~~g~~~~~~~lg~~l~~~l~~~v~~~t~~~~~~~~~w~~-~~~n~~~~~~~~~~~~~~ 518 (520)
|+++|++||+.+++++.+..++|++++++++.++...|+ + ..+|++ +|+|++|+|+|||+++..
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~ 548 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVY 548 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886 3 468999 999999999999999853
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=331.30 Aligned_cols=370 Identities=18% Similarity=0.257 Sum_probs=291.0
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh
Q 009990 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY 136 (520)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~ 136 (520)
.....+++|.++.++..+++||++|||+...+..|++.+++ ++++++..+.+.|....++.+++|||++||++|+|
T Consensus 13 ~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 13 EMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 34566789999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccC
Q 009990 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (520)
Q Consensus 137 ~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (520)
+++..+.+++++|+++++.+.. .....++++++++++|.|+.++|+.++++|++
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly 146 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELY 146 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhc
Confidence 9999999999999999997520 13567899999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccccC--CCCChhh
Q 009990 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLT 294 (520)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 294 (520)
|++++| |+.+|+++|++.|+|+.++|++.+++.+++||..+|.++++.+.++++.++++++.+.... +..+|+.
T Consensus 147 ~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~ 222 (498)
T COG3104 147 PKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLS 222 (498)
T ss_pred CCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchh
Confidence 999988 9999999999999999999999999999999999999999999999999999998876543 3333322
Q ss_pred H--HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHh-HHHHhhhccccC-CCCCCccccchhHH
Q 009990 295 R--VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDVI-NPSPWKLCTVTQVE 370 (520)
Q Consensus 295 ~--~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-d~a~~~~~~~~~-~~~~~~~~~~~~v~ 370 (520)
. ..+.+...+..-.. .+ - +. +...+..+.. ....+....... +...+ .+.+ +
T Consensus 223 ~~~~~~~~~~~~~~~~~-~~---~---~~-------------~l~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~ 278 (498)
T COG3104 223 FNFLLPVLGGLVVMILA-AL---L---TL-------------LLNQNTFSGVLLVISILIAIIYFAEAFRS---PKVF-D 278 (498)
T ss_pred hhhhhhhHHHHHHHHHH-HH---H---HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccH-H
Confidence 1 11111000000000 00 0 00 0000000100 000000000000 00111 1223 7
Q ss_pred HHHHHHhhchhhhHHHHHHHHHhhhhhHHHHHH-HhhccccCCeEeCC-------------------------CCCCCCC
Q 009990 371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPV-------------------------TCHPRGA 424 (520)
Q Consensus 371 ~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~-~~~~~~~~g~~ip~-------------------------~~~~~~~ 424 (520)
|+|+++.++++++..++||++++|++|.+..|+ +..|++..|+.+|+ .+..+.+
T Consensus 279 er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~p 358 (498)
T COG3104 279 ERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQP 358 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCC
Confidence 899999999999999999999999999999996 56677767788876 2344679
Q ss_pred CchhHHHhhHHHHHHHHHHH-----------------------------------hhHhhhhccCCcchhHHHHHHHHHH
Q 009990 425 SQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAALA 469 (520)
Q Consensus 425 s~~~~i~iG~~~~~~~~~~~-----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~ 469 (520)
+...|+++|+++++.++++. +.+|.+++++|+++++.+||+|+++
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999999887 4566788999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 009990 470 GGLGCFAASILNSII 484 (520)
Q Consensus 470 ~~lg~~l~~~l~~~v 484 (520)
...|+.++..+.+..
T Consensus 439 ~a~~~~l~g~va~~~ 453 (498)
T COG3104 439 VAAGQTLGGQVAGLT 453 (498)
T ss_pred HHHHHHhhceecccc
Confidence 999999999888743
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=294.11 Aligned_cols=369 Identities=15% Similarity=0.171 Sum_probs=270.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
+|++.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+.+..+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++++++.... .+...+++++.++++|.|...++..++++|+||+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999987665420 11233555666777888888899999999999987544
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccccC-CCCChhh--HHHHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLT--RVAQVLVA 302 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~--~~~~v~~~ 302 (520)
|+++++++|...|+|+.++|.+++++.+.+||+++|.++++.++++++.++..++.+.+.. .+++|.. +....+..
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 8999999999999999999999999999999999999988888888888777665553321 1112221 10000000
Q ss_pred HHHhhccccCCcccccccccCCCcccccCCcccccCCchhHh-HHHHhhhccccCCCCCCccccchhHHHHHHHHhhchh
Q 009990 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 381 (520)
Q Consensus 303 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-d~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~ 381 (520)
.+---.. ..+- +... .+. +.....+ -........- . -... .++...+|+|++..++++
T Consensus 215 ~~~~~~~---~~~~--~~~~-----------~~~-~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~er~r~~~~~~l 273 (493)
T PRK15462 215 WLLVLLV---ATPA--LITV-----------LFW-KEWSVYALIVATIIGLGV-L-AKIY--RKAENQKQRKELGLIVTL 273 (493)
T ss_pred HHHHHHH---HHHH--HHHH-----------HHH-HHHHHHHHHHHHHHHHHH-H-HHHH--HhcCCHHHHhhHHHHHHH
Confidence 0000000 0000 0000 000 0000000 0000000000 0 0000 001234678999999999
Q ss_pred hhHHHHHHHHHhhhhhHHHHHH-HhhccccCCeEeCC-------------------------CCCCCCCCchhHHHhhHH
Q 009990 382 PACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPV-------------------------TCHPRGASQLQRVGIGLA 435 (520)
Q Consensus 382 ~~~~~~~~~~~~q~~t~~~~~~-~~~~~~~~g~~ip~-------------------------~~~~~~~s~~~~i~iG~~ 435 (520)
++..++||+.|+|.++.+...+ +++|++++||.+|+ .|+++.++...|+++|++
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~ 353 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLG 353 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 9999999999999999988885 67899999999987 223457899999999999
Q ss_pred HHHHHHHHH-------------------------hhH---------hhhhccCCcchhHHHHHHHHHHh-HHHHHHHHHH
Q 009990 436 VSILSVIWA-------------------------GLL---------EFLYEEAPDAMKSIGSAYAALAG-GLGCFAASIL 480 (520)
Q Consensus 436 ~~~~~~~~~-------------------------~~~---------e~~~~~aP~~~rg~~~g~~~~~~-~lg~~l~~~l 480 (520)
+.++++++. +.. +.+.+++|+++||++||+|++.. .+|+.+++.+
T Consensus 354 ~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~ 433 (493)
T PRK15462 354 LMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI 433 (493)
T ss_pred HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998775 233 34679999999999999999855 7999999888
Q ss_pred HHHhhh
Q 009990 481 NSIIKS 486 (520)
Q Consensus 481 ~~~v~~ 486 (520)
.+....
T Consensus 434 ~~~~~~ 439 (493)
T PRK15462 434 ADQTSQ 439 (493)
T ss_pred HHHhcc
Confidence 887744
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=291.95 Aligned_cols=363 Identities=15% Similarity=0.154 Sum_probs=269.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~ 141 (520)
..++++.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 456788899999999999999999999999999988 999999999999999999999999999999995699999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCh
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (520)
+.+++.++.+++++. .+...+++++++.|+|.|...++..++++|+++++++
T Consensus 85 ~~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~ 136 (475)
T TIGR00924 85 GGIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM 136 (475)
T ss_pred HHHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc
Confidence 999999999888764 2355677889999999999999999999999987652
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHH-----
Q 009990 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV----- 296 (520)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----- 296 (520)
+ .|+++++++|++.|+|+.+||.+++++.+++||++.|+++++.+++++++++..++.+++.++++++..+.
T Consensus 137 ~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
T TIGR00924 137 P---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG 213 (475)
T ss_pred c---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence 1 18889999999999999999999999999899999999988877777777777666655443333222110
Q ss_pred H--H----HHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHhhhccccCCCCCCccccchhHH
Q 009990 297 A--Q----VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE 370 (520)
Q Consensus 297 ~--~----v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~ 370 (520)
. . .+...++.... ..... . .+....-...+...+..... .++ +.++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~-~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~-~~~----~~~~-~ 266 (475)
T TIGR00924 214 KLLLALLAALALVFFCAWL-MHHVV-----I---------------ANILLMTVTLAVIIFFFRLA-FKP----RLDA-V 266 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhccH-----H---------------HHHHHHHHHHHHHHHHHHHH-Hhc----cCCH-H
Confidence 0 0 00001110000 00000 0 00000000001111000000 000 1122 3
Q ss_pred HHHHHHhhchhhhHHHHHHHHHhhhhhHHHHH-HHhhccccCCeEeCC-------------------------CCCCCCC
Q 009990 371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ-AYTMNTHMGKLKLPV-------------------------TCHPRGA 424 (520)
Q Consensus 371 ~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~-~~~~~~~~~g~~ip~-------------------------~~~~~~~ 424 (520)
++++...+++++++.+++|.+|+|+.+.+..+ .+++|+++.++.+|+ .++++.+
T Consensus 267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~ 346 (475)
T TIGR00924 267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP 346 (475)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34555668899999999999999999987765 466888888887776 2333457
Q ss_pred CchhHHHhhHHHHHHHHHHH----------------------------------hhHhhhhccCCcchhHHHHHHHHHHh
Q 009990 425 SQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAG 470 (520)
Q Consensus 425 s~~~~i~iG~~~~~~~~~~~----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~~ 470 (520)
+...|+++|+++.+++++.+ +..+++++++|+++||+++|++.+..
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88889999999998887663 34456789999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 009990 471 GLGCFAASILNSII 484 (520)
Q Consensus 471 ~lg~~l~~~l~~~v 484 (520)
++|+++++.+++..
T Consensus 427 ~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 427 AMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998866
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=288.41 Aligned_cols=367 Identities=13% Similarity=0.175 Sum_probs=269.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~ 143 (520)
.++|||.++.+++.+++|++++|++..+++.|+++++|++.++++++.+.+....++.++++|+|+||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999669999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh
Q 009990 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (520)
Q Consensus 144 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (520)
+++.++++++.++. .....++++++++++|.|..+++..++++|+||+++++
T Consensus 89 ~~~~~g~~~~~~~~---------------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSL---------------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhc---------------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 99999999988751 11234667899999999999999999999999987633
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhhHHHHHHH
Q 009990 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLV 301 (520)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~ 301 (520)
|++.++++|++.|+|+.+||.+++++.+..||+++|++.++.++++++.+...++.+++. +|++++.. ..+.+.
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l 216 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLL 216 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHH
Confidence 688999999999999999999999999999999999998877777777776666555443 23333321 111100
Q ss_pred HHHHhhccccCCcccccccccCCCcccccCCcccccCCchhH-hHHHHhhhccccCCCCCCccccchhHHHHHHHHhhch
Q 009990 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 380 (520)
Q Consensus 302 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~ 380 (520)
...---.....- .+ .... ...... +.......... ..++....+ ..++++.+..+.
T Consensus 217 ~~~~~~~~~~~~--~~-~~~~---------------~~~~~~~~~~~~~i~~~~----f~~~~~~~~-~~~r~r~~~~~~ 273 (489)
T PRK10207 217 VLLGSVVMIFVC--AW-LMHN---------------VEVANLVLIVLSIVVTII----FFREAFKLD-KTGRNKMFVAFV 273 (489)
T ss_pred HHHHHHHHHHHH--HH-HHhh---------------hhHHHHHHHHHHHHHHHH----HHHHHhcCC-HHHHHHHHHHHH
Confidence 000000000000 00 0000 000000 00000000000 000000111 234666777778
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHH-hhccccCCeEeCC-------------------------CCCCCCCCchhHHHhhH
Q 009990 381 IPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV-------------------------TCHPRGASQLQRVGIGL 434 (520)
Q Consensus 381 ~~~~~~~~~~~~~q~~t~~~~~~~-~~~~~~~g~~ip~-------------------------~~~~~~~s~~~~i~iG~ 434 (520)
+++..+++|..+.|..+.+..+.. +++++..|+.+|+ .+++..+++..|+++|+
T Consensus 274 l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~ 353 (489)
T PRK10207 274 LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGM 353 (489)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 888899999999999998888865 5777777777654 33445688999999999
Q ss_pred HHHHHHHHHH-----------------------------------hhHhhhhccCCcchhHHHHHHHHHHhHHHHHHHHH
Q 009990 435 AVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 479 (520)
Q Consensus 435 ~~~~~~~~~~-----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~~~lg~~l~~~ 479 (520)
++.+++++++ ...+++++.+|++++|.+||+|++..++|+.+|..
T Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~ 433 (489)
T PRK10207 354 FLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY 433 (489)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887531 33566789999999999999999999999999999
Q ss_pred HHHHhh
Q 009990 480 LNSIIK 485 (520)
Q Consensus 480 l~~~v~ 485 (520)
++..+.
T Consensus 434 l~~~~~ 439 (489)
T PRK10207 434 VATFTA 439 (489)
T ss_pred HHHHhc
Confidence 988774
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-30 Score=274.55 Aligned_cols=361 Identities=15% Similarity=0.198 Sum_probs=264.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
.++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999888888888888888999999995599999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..+++++++++. .....++++++++|+|.|...++..++++|++|+++.+
T Consensus 97 ~~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~-- 147 (500)
T PRK09584 97 VLAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR-- 147 (500)
T ss_pred HHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh--
Confidence 9999988877641 12455677888999999999999999999999876633
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccccccc--CCCCChhh--HH----
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RV---- 296 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~~---- 296 (520)
|+.+++++|++.|+|+.+||.+++++.+..||++.|++.++..+++++.+++.++.+++. +|++++.. +.
T Consensus 148 --~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
T PRK09584 148 --LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTI 225 (500)
T ss_pred --hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHH
Confidence 667899999999999999999999999999999999998877777776665555443332 23322221 11
Q ss_pred HHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHhhhccccCCCCCCccccchhHHHHHHHH
Q 009990 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (520)
Q Consensus 297 ~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~ 376 (520)
..+......... +..+. + . .+............... ...+.. +.+|+++++
T Consensus 226 ~~~~~~~~~~~~----------~~~~~---~-------~-~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~ 276 (500)
T PRK09584 226 VGVVALIAIATW----------LLHNQ---E-------I-ARMALGVVALGIVVIFG-------KEAFAM-KGAARRKMI 276 (500)
T ss_pred HHHHHHHHHHHH----------HHhcc---h-------H-HHHHHHHHHHHHHHHHH-------HHHhhc-CHHHHHHHH
Confidence 111111111000 00000 0 0 00000000000000000 000111 234566677
Q ss_pred hhchhhhHHHHHHHHHhhhhhHHHHHHH-hhccccCCeEeCC----------------------CCCCCCCCchhHHHhh
Q 009990 377 RLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV----------------------TCHPRGASQLQRVGIG 433 (520)
Q Consensus 377 ~~l~~~~~~~~~~~~~~q~~t~~~~~~~-~~~~~~~g~~ip~----------------------~~~~~~~s~~~~i~iG 433 (520)
..+++++..++||+++.|+++.+..|+. ++|+++.|+.+|+ +|.+++++..+++++|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 7788889999999999999999998875 4677778888773 3444456688999999
Q ss_pred HHHHHHHHHHH----------------------------------hhHhhhhccCCcchhHHHHHHHHHHhHHHHHHHHH
Q 009990 434 LAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 479 (520)
Q Consensus 434 ~~~~~~~~~~~----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~~~lg~~l~~~ 479 (520)
+++.+++++.+ ...+++++.+|+++||++||+|+++.++|+.++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998772 33466789999999999999999999999999999
Q ss_pred HHHHhh
Q 009990 480 LNSIIK 485 (520)
Q Consensus 480 l~~~v~ 485 (520)
+...+.
T Consensus 437 ~~~~~~ 442 (500)
T PRK09584 437 VANLMA 442 (500)
T ss_pred HHHHhc
Confidence 987653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=284.40 Aligned_cols=307 Identities=24% Similarity=0.436 Sum_probs=257.1
Q ss_pred HHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009990 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (520)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~ 162 (520)
+++||+...+..|+++.+|++.+.+..+...+....++.+++||+++|+++||++++.++.+++.+|++++++.+..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998875432111
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 009990 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (520)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (520)
.+ ......+++++++++|.|+.++|..++++||+++++. +.|.++|+|+|+++|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 11 2344577889999999999999999999999986543 238999999999999999
Q ss_pred HHHhHHHhhhhccc-------chhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcc
Q 009990 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (520)
Q Consensus 243 ~i~~~i~~~l~~~~-------g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~ 315 (520)
.+++++.+++.+.+ +|.++|.+++++++++++++...++.+++.+|.++++.+.++++..++|++.....+
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-- 215 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-- 215 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--
Confidence 99999999998543 699999999999999999999999999888888898888899998888765321110
Q ss_pred cccccccCCCcccccCCcccccCCchhHhHHHHhhhccccCCCCCCccccchhHHHHHHHHhhchhhhHHHHHHHHHhhh
Q 009990 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (520)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~ 395 (520)
....+|+|.++... ..++++|+|++++++++++..++||..+.|+
T Consensus 216 ----------------------~~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 216 ----------------------HWPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred ----------------------ccchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00125677664421 2346899999999999999999999999999
Q ss_pred hhHHHHHHHhhccccCCeEeCC--------------------------CCCCCCCCchhHHHhhHHHHHHHHHHHhhHhh
Q 009990 396 LTLSVQQAYTMNTHMGKLKLPV--------------------------TCHPRGASQLQRVGIGLAVSILSVIWAGLLEF 449 (520)
Q Consensus 396 ~t~~~~~~~~~~~~~~g~~ip~--------------------------~~~~~~~s~~~~i~iG~~~~~~~~~~~~~~e~ 449 (520)
.|.++.|+.+|+.+++++.+|+ ++++..+++++|+++|+++++++++++...|.
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887765 34445678999999999999999999855554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=220.05 Aligned_cols=276 Identities=33% Similarity=0.502 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhcc
Q 009990 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (520)
Q Consensus 136 ~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (520)
+|+++++.+++++|++++++++..+... ++.+...++++++++++|.|+.+||+.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 5899999999999999988886644321 124567899999999999999999999999999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccccccc-CCCCChhh
Q 009990 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (520)
Q Consensus 216 ~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 294 (520)
++++++ ..|.++|+++|++.|+|+.+++.+.+++++++||.++|+++++++++++++++..++.+++. +|.++++.
T Consensus 62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 998742 22999999999999999999999999999999999999999999999999999999999888 78888888
Q ss_pred H-HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHhhhccccCCCCCCc-cccchhHHHH
Q 009990 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (520)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~-~~~~~~v~~~ 372 (520)
+ ...++..+.+++....+....+ +++..... .... ..+.....+.+...... ...|+ .++++++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQY----SERS--IFGIIVFIRAAVIFFPE----IFFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH----CCCC--CCCCCCHHHHHHHHCCC----HHHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhh----hhhh--hhhhhhhccchhhhhhh----hhhcccCCccceeeee
Confidence 7 5666666677766654332222 11110000 0000 00000111111111000 00111 1456788899
Q ss_pred HHHHhhchhhhHHHHHHHHHhhhhhHHHHHHHhhccccCC-eEeCC-------------------------CCCCCCCCc
Q 009990 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV-------------------------TCHPRGASQ 426 (520)
Q Consensus 373 k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g-~~ip~-------------------------~~~~~~~s~ 426 (520)
|.+.+.++.+...++|+.++.|.++....|...+|+.+.+ +.+|+ -++++.++.
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 9999999999999999999999999999888888888887 88876 234567889
Q ss_pred hhHHHhhHHHHHHHHHHH
Q 009990 427 LQRVGIGLAVSILSVIWA 444 (520)
Q Consensus 427 ~~~i~iG~~~~~~~~~~~ 444 (520)
..|+++|+++.+++++++
T Consensus 288 ~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHHHH-HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 999999999998888875
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=207.32 Aligned_cols=176 Identities=15% Similarity=0.077 Sum_probs=139.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.+.++.+..++..+... +.+.+.+++.++++++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 34444444444444444332 344456677789999999999999999999999999999999996 9999999999998
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.++.+++ .+...++++|++.|+|.|+..+...++++|.+|.+.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 8888887765 357788899999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcc-------------cchhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-------------~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|+..++++.....+|.++++.++.++... .+||+.|++.++..++++++.++
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999998877655432 35888888777665555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=180.57 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=150.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
+.+|.++.+....++..++.+.+..+++.|+++++|++..+.+++.+.+.+...++.++.|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3455677888888999999988899999999999999999999999999999999999999999996 999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+++.+. ++...+++++.+.+.+.+...++..+..+|.+++++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 129 (395)
T PRK10054 83 FASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS----- 129 (395)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH-----
Confidence 88888777664 345566667777777777777888999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
|++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++.+++..
T Consensus 130 -~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 130 -KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 7899999988777666554433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=174.56 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~ 153 (520)
++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455666666666556666677765 5899999999999999999999999999999996 99999999998888877776
Q ss_pred HhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHH
Q 009990 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (520)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (520)
.+.... +. .+.+.+++++++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----GG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 665210 00 257788899999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
++.+.++|..++|.+++++.+..||++.|++.++..+++.+..+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888999999887776655544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=178.25 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=123.1
Q ss_pred hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 167 (520)
......+.+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+......+.+.....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344455677789999999999999999999999999999999996 99987765555444433211111
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (520)
.+...++++|++.|+|.+.. .+.....+|.+|+++ |++..++...+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 25778999999999999864 555566689999877 999999999999999999999
Q ss_pred HHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 248 i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+++++.+..|||+.|++.+++.++..++++.
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999998899999998866665555444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=177.03 Aligned_cols=175 Identities=13% Similarity=0.197 Sum_probs=150.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 009990 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (520)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~ 142 (520)
..+.+|+.+..+.+..+...+..+.+... ...+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 45677888888888888888888655554 4567789999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh
Q 009990 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (520)
Q Consensus 143 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (520)
.++..++.+++.+. .+...++++|++.|++.+...+...+++.|.+++++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99988888877764 356778889999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc--hhHHHHHHHHHHHHHH
Q 009990 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISN 273 (520)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--~~~~f~i~~i~~~i~~ 273 (520)
|+++.+++..+..+|..+++.+++.+.+..+ |++.|.+.++..++.+
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877665 9999987655544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=178.94 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
++++...++..++.+.+.+.++.|+++++|++..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5666788888899989999999999999999999999999999999999999999999996 999999999999999888
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
.+.+. ++.+.+++.+++.|++.+...+...+++.|.+|+++ |+++.
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 87664 346778888999999988888899999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
++.+...++|..+||.+++++. ..||++.|++.++..++..++...
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 679999999877665554444333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=175.36 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=148.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.++.+++..+++.+....+.. ....+++++|++..+.+++.+++.++..+++++.|+|+||+ |||+++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 566677777776776666654444 44588999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.++.+++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 129 (412)
T TIGR02332 84 GIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------ 129 (412)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------
Confidence 9999888775 356788999999999999999999899999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhc------ccchhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~------~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++..++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.++
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998863 368999999877665544444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=177.07 Aligned_cols=176 Identities=17% Similarity=0.169 Sum_probs=149.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+.+|..+.+..+..+++.+..+...... +.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 4667777777788888888776655554 456678999999999999999999999999999999996 99999999998
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.+++.+. .+...+++.+++.|++.+...+...++++|.+++++
T Consensus 89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 888887776654 356778889999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
|++++++++...++|..+++.+++.+.+..+|++.|++.+++.++..++.
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888899999988776555444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=173.74 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=144.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|..++.+.+..++.....+..... ...+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGL-LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcc-hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 4555666666556544444433333 3467789999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+.+.++ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 85 ~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------ 130 (390)
T PRK03545 85 IASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------ 130 (390)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------
Confidence 9998887765 457888999999999998888999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..
T Consensus 131 r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 131 KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999998877655544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=178.78 Aligned_cols=180 Identities=15% Similarity=0.063 Sum_probs=152.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
++|..+..+.+..++..+....+...+|.. .+++|.+..+.+++.+.|.++..++.+++|+++||+ |||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~ 80 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTL 80 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 356677788888888888887677666644 678999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCC-CCChhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYK 224 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~ 224 (520)
+.++.+++.++ .+.+.++++|++.|+|.++..+.....+.+.++ +++
T Consensus 81 ~~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~---- 128 (495)
T PRK14995 81 FGLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ---- 128 (495)
T ss_pred HHHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----
Confidence 99999988875 457889999999999999988888888877774 455
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
|+++++++....++|..+||.+++++.+..||||.|++.....++.+++.....+
T Consensus 129 --r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 129 --RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999877665555554444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=181.40 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i 139 (520)
+.+++.+.++.+..+...+....+....+ .+..+ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~ 89 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVY 89 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHH
Confidence 34455566666666666666544443333 33332 234556778899999999999999999999996 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC
Q 009990 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (520)
Q Consensus 140 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (520)
.++.++..++.++..++... .+ ..+...++++|++.|++.|+..+....+++|.+|++
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~ 147 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK 147 (502)
T ss_pred HHHHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh
Confidence 99999999988877764110 00 023578899999999999999999999999999999
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc-----------------------ccchhHHHHHHHHHHHHHHHH
Q 009990 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-----------------------~~g~~~~f~i~~i~~~i~~~~ 275 (520)
. |+++.++++....+|..+++.+..++.. ..+||+.|.+.++..++.++.
T Consensus 148 ~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 148 W------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999988888765431 247999997776655544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=175.17 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009990 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (520)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~ 154 (520)
++..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4455666666666666666688899999999999999999999999999999999996 999999999999999855555
Q ss_pred hhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 009990 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (520)
++ .+.+.+++++++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 134588899999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 235 ~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
+...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999988899999999888877776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=169.67 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=135.1
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q 009990 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (520)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 170 (520)
...+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.+.
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 79 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------- 79 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH--------------
Confidence 344568889999999999999999999999999999999996 99999999999998888887765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 009990 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (520)
.+...+++++++.|++.+...+...+++.|.+|+++ |++.++++....++|..+++.+++
T Consensus 80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 357788999999999999999999999999999887 999999999999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 251 ~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
++.+..+|++.|++.++..++..++.+.
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 9888899999999877766555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=169.14 Aligned_cols=172 Identities=13% Similarity=0.038 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.++.+.+..++..++.......++.|+.+++|+|..+.+++.+.+.++..++.++.|+++||+ ||||.+.++.++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 3456666667777777766777788899999999999999999999999999999999999996 999999999888777
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+...+....+.. . ..+...++++|++.|++.+...+...+++.|.+|+++ |+
T Consensus 94 ~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 147 (392)
T PRK12382 94 AGLAYLLAAILPVS-A-------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SG 147 (392)
T ss_pred HHHHHHhhhccccc-h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cc
Confidence 65543332111100 0 0356788999999999999888888899999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i 267 (520)
++++++..+.++|..++|.+++++.+..||++.+.+..+
T Consensus 148 ~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~ 186 (392)
T PRK12382 148 KVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV 186 (392)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 999999999999999999999999888899987665443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=172.12 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=144.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+.+++.+....+..+...+..+.. ..+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344556666666666666666544 4455677889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.++..++ .+...++++|++.|+|.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---- 139 (426)
T PRK12307 92 AYSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---- 139 (426)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence 999998887775 457788999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
|+++.+++..+..+|..+++.+.+++.+..||++.|++.++.
T Consensus 140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999988888999999875443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-17 Score=167.64 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=148.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 009990 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (520)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~ 142 (520)
.++..|+.+..+.+..++.....|.....++. +.+++|+++.+.++..+.+.++..++.++.|+++||+ |||+.+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 34557776666666666666666655555554 5568999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh
Q 009990 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (520)
Q Consensus 143 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (520)
.++..++.+++.+. .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-- 141 (394)
T ss_pred HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence 99999988877664 457889999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHH
Q 009990 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (520)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~ 273 (520)
|+++.++...+.++|..++|.+++++.+..||++.|++.++..++.+
T Consensus 142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999988776554433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-17 Score=172.86 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
.+.++.+.+..++..+..+.+...++.+.. ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 346778888888888888888888777765 6999999999999999999999999999999996 99999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+++.+. .+...++++|++.|+|.+...+...+.+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 887776653 346678889999999999999999999999999877 8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++.+++++...++|..++|.+++++.+..||++.|++......+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999899999999877665555554444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-17 Score=168.20 Aligned_cols=174 Identities=10% Similarity=-0.025 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.+..+.+..++..++.......++.|+.+++|.|..+.+++.+++.++..++.++.|+++||+ ||||++.++.+++.+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHH
Confidence 4577778888888888877788899999999999999999999999999999999999999996 999999999998888
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+.+.++...... + ..+...+++.|++.|+|.+...++..++..|.+++++ |+
T Consensus 94 ~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 147 (399)
T PRK05122 94 SGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TG 147 (399)
T ss_pred HHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hc
Confidence 77766554211000 0 0245678899999999999999999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~ 269 (520)
+.++++....++|..+++.+++++.+..||++.+++.++..
T Consensus 148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 188 (399)
T PRK05122 148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLA 188 (399)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999989999999999999999988899998877655543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-17 Score=171.37 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.++..++..++..+..+.+...++.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 344445555555555555555555544 457999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+++.+. .+...+++.+++.|++.|...+...+++.|++++++ |+
T Consensus 101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 88877765 456777888889999999888999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~ 272 (520)
+.+++++.+.++|..+++.+++++.+..|||+.|++.++..++.
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999998877654443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=176.48 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=136.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--------CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~ 138 (520)
+.+.++...+..+...+....+...+ ..+++.+ +++..+.+++.+.+.++..++++++|+++||+ |||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTV-ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhH-HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence 34445555555454444443233322 2344444 88999999999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
++++.+++.++.++.++......... .++......++++|++.|++.|+..+...++++|.+|+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 99999999888877665311000000 00113456788999999999999999999999999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh--------cccchhHHHHHHHHHHHHHHHHH
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
++ |+..++++..+..+|..+++.++..+. +..|||+.|++.++..++.++..
T Consensus 152 ~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 152 HI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 88 999999999999999999887765443 34689999998776665554433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=165.66 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
.+|+.+...++..+...+..+ ......+++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence 345555555555555555554 333445567778999999999999999999999999999999996 999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+++.+. .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 92 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 138 (398)
T TIGR00895 92 FSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----- 138 (398)
T ss_pred HHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh-----
Confidence 88887777654 346678888999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
|++.++++..+..+|..+++.+++++.+..||++.|++.++..++..++..
T Consensus 139 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (398)
T TIGR00895 139 -RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189 (398)
T ss_pred -hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999889999999887654444443333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=172.31 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+..+.+..++..+....+... .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVA-IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3455556666666666444444 4566778999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8887764 357788899999999999999999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++++++....+|..++|.+++++.++.||++.|++.+...++..++.....+
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999877665555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-19 Score=179.63 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=160.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
..++.+.+++++.+++++.-|.+.+. ..-+++.+|.++...+++...+.+...+++|+.|+|+||| .|++++.+|.++
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv-~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGV-LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 34557888999999999999877773 4467778999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
+.++.++..++ ..++++.++|.+.|+|.+.+.+..+++++|.|+++.
T Consensus 108 W~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----- 154 (493)
T KOG1330|consen 108 WTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----- 154 (493)
T ss_pred HHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence 99999998876 468899999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
|++.++++|+++++|+++|...++++.+..+ |||+|...+++.++..++.++..
T Consensus 155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988777 99999998888766655554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-17 Score=168.63 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~ 153 (520)
++...++..++.......++.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence 33445555566544455555554 56778999999999999999999999999999996 99999998888777776665
Q ss_pred HhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHH
Q 009990 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (520)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (520)
.+.... .. .+...+++.+++.|++.+...++..+++.|.+++++ |+++.++
T Consensus 100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 432110 00 245677788889999888888888899999999877 8999999
Q ss_pred HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
.+...++|..+||.+++++.+..+|++.|++.++..+++.++.
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888899999988776665554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=167.43 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCh--HH--HH-H-HHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--AD--SS-N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~--a~-~-~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~ 141 (520)
++.++...+..+++.+.+. +......++.++++.+. .. .+ . +.++..++..++++++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4556667778888887774 45556678888876433 21 11 1 24667788999999999999996 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCh
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (520)
+++++.++.++++++.....+. -....+++++|++.|+|.|+..++..++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999999988761100000 0011247899999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh--------cccchhHHHHHHHHHHH
Q 009990 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (520)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~g~~~~f~i~~i~~~ 270 (520)
|+...++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988888888877776654432 25799999998654433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=165.21 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~ 156 (520)
.+++..++...+...++ .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||+++.++.++..++.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~ 98 (406)
T PRK15402 21 FEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA 98 (406)
T ss_pred HHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH
Confidence 33333334433444444 35678999999999999999999999999999999996 99999999998888888777664
Q ss_pred hcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 009990 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (520)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (520)
.+...+++.|++.|++.+...+...+.+.|.+++++ |.+..++.+.
T Consensus 99 ----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~ 144 (406)
T PRK15402 99 ----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMAN 144 (406)
T ss_pred ----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHH
Confidence 346678888999999998888888999999999877 8888888888
Q ss_pred HHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 237 ~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
...++..++|.+++++.+..+|++.|++.+++.+++.+..+.
T Consensus 145 ~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 145 VALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999988889999998877776665554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=164.69 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=130.2
Q ss_pred HHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009990 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (520)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~ 163 (520)
..+.+...+| .+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+..++.++.++.+++
T Consensus 24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a------- 94 (393)
T PRK09705 24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY------- 94 (393)
T ss_pred hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC-------
Confidence 3344554444 66789999999999999999999999999999999996 99999999999999999999886
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 009990 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (520)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (520)
++...++++|++.|+|.+...++...++.+.++ ++ |+.+.+++..+.++|..
T Consensus 95 ---------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~ 146 (393)
T PRK09705 95 ---------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGG 146 (393)
T ss_pred ---------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999987 66 89999999999999999
Q ss_pred HHhHHHhhhhccc-chhHHHHHHHHHHHHHH
Q 009990 244 VAFTLVVYIQMEH-GWGSAFGALAIAMGISN 273 (520)
Q Consensus 244 i~~~i~~~l~~~~-g~~~~f~i~~i~~~i~~ 273 (520)
+++.+++++.+.. +||+.+.+.++..++.+
T Consensus 147 ~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 147 LGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999888765 79988766555444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=154.48 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=162.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
...|..++.+.+..|+-..+-+...+.+ +-+.+++|.|...+++.++.|..+..++.++...++||+ .||++++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 3445677888888888777777666654 466779999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+++++.++.+++ +++.++.++|++.|+..|...+...+..+++.|+++
T Consensus 87 lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---- 134 (394)
T COG2814 87 LFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---- 134 (394)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----
Confidence 999999999997 578999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
|+++.++.+.+..++..+|..++.++.+.+|||+.|++.++..+++++..+...|
T Consensus 135 --~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 --RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred --hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999888877777776666555
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=164.99 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChHHHHHH---HHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNA---VNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~---~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~ 140 (520)
+++.+....+..+++.+.... .+.+..++.++++ .+..+.+.. .+...++..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 333455555667777777654 5566678888874 455543333 3444455559999999999996 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 009990 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (520)
Q Consensus 141 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (520)
++.+++.++.++.+++....... ......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999999887751100000 0123568899999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh--------cccchhHHHHHHHHHHHH
Q 009990 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (520)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~g~~~~f~i~~i~~~i 271 (520)
|+...++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 999999988888888888877665443 257999999886665443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-16 Score=164.04 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=129.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--CCChHHHHHHH-----HHHHHHHHHHHhHHHHHhhhccchhHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWT 138 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~LsDr~~GR~~~ 138 (520)
.+++.++..++..+++.+....+....+.++.+++ +.++.. +.+. .+..++..++.++.|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34566777777788887777654444455666655 666664 3332 233455668888899999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
+.++.+++.++.++++++...... .......+++.|++.|++.|+..+....++.|.+|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTI--------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHH--------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 999999999999888875110000 001123578899999999999999999999999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh--------cccchhHHHHHHHHHH
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~g~~~~f~i~~i~~ 269 (520)
++ |+...+....+..+|..++..+..++. ..+|||+.|++.++..
T Consensus 157 ~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 157 NK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 88 998888888888899888877766654 2479999998776653
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-17 Score=164.95 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=129.8
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 169 (520)
+.+.+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------------- 88 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------------- 88 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH-------------
Confidence 3456788889999999999999999999999999999999996 99999999999999999888775
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
.+...++++|++.|++.+...+.......+.++ ++ |++..+++..+.++|..+++.+.
T Consensus 89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 467888899999999999887788888888886 45 88999999999999988877777
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 250 ~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+.+.+..|||+.|++.++..++..+..+.
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777789999999887766555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=163.55 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=132.0
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q 009990 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (520)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 170 (520)
...+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 80 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS-------------- 80 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh--------------
Confidence 345578889999999999999999999999999999999996 99999999999999988888775
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh-HHH
Q 009990 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLV 249 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~-~i~ 249 (520)
.+...+++.+++.|++.+...+...+++.|.+|+++ |++.+++.+.+.++|..+++ .++
T Consensus 81 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 140 (379)
T TIGR00881 81 --------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL 140 (379)
T ss_pred --------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence 356788899999999999999999999999999888 99999999999999999999 566
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 250 ~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+.+.+..+|++.|++.+++.++..++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 141 FGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 67777789999998877665554444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-16 Score=159.65 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=145.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+++.++.+.+..+...++.......+ +++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 34445555555555555554444444 456778999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+++... .+...+++++++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888887764 356778889999999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++.+....+|..+++.+++++.+..+|++.|++.++..++..+..+..
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888899999988777665555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=158.32 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~ 152 (520)
.+.+..++..+..+.....++.|. +++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 455566777777777777777666 46799999999999999999999999999999996 9999999999999999888
Q ss_pred HHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
+.+. .+...+++++++.|++.+...+...++..|.+++++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 7765 356788899999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+.+...++|..+++.+++++.+..+|++.|++.++..++..++...
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999888776666555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=159.01 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHHH
Q 009990 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGIT 154 (520)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~-~~~~~~lg~~~~~ 154 (520)
+..++..++.......++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.+++ +..+..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 446666777777888899999999999999999999999999999999999999996 98887654 4454455555555
Q ss_pred hhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH--HH
Q 009990 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--FN 232 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~--~~ 232 (520)
++ .+...+++.+++.+.+.+...|...++..|..+++. |... .+
T Consensus 83 ~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~ 128 (375)
T TIGR00899 83 WN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSS 128 (375)
T ss_pred hc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHH
Confidence 43 345667777878877777777888888888776555 4433 56
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+.+...++|..++|.+++++.+..||++.|++.+++.++..++.+.
T Consensus 129 ~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 129 VMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999999988889999999888766555554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=158.74 Aligned_cols=172 Identities=12% Similarity=-0.012 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
....+.+..++..+++......++.|++ ++|++..+ .+.+.+++.+...++.++.|+++||+ |||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 4555666777777887777778888875 58887554 37788889999999999999999996 99999999998
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.+++.+. .+...+++.+++.|++.+ ..+...+++.|.+++++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888887776654 356778888999998755 45777788899998877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++..++++...++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988889999998887766555544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=173.51 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=127.4
Q ss_pred HHhhhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q 009990 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (520)
Q Consensus 94 ~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 170 (520)
..+.++++++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3567789998 88999999999999999999999999996 99999999999998888887765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 009990 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (520)
.+...+++.|++.|++.++..+...+++.|.+|+++ |+...+++..+..+|.++++.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999988 999999988889999999998876
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 251 ~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.+.+ ||+.|++.++..++..+..++
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 6643 999998887766655555433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=167.02 Aligned_cols=168 Identities=14% Similarity=0.224 Sum_probs=144.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+.+|+.+..+.+..++..+..+.+.. +..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 34566777777777777777655544 45567789999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.+++.+. .+...+++.+++.|++.++..+...+++.|.+++++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 999988887765 357788899999999999999999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
|++.+++++.+.++|..+++.+.+++.+..+|++.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999989999998865443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=157.21 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=138.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~ 143 (520)
+-+.||.+....+..++..++.+....+++.++ +++|++..+.++..+.+.++..++.++.|+++||+ ||||++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~ 85 (402)
T TIGR00897 8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL 85 (402)
T ss_pred HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence 345566777888888888888777777888888 57899999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh
Q 009990 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (520)
Q Consensus 144 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (520)
++..++.+++...... . .+...+++.|++.|+|.+...+...+.+.+.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~----~--------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~--- 138 (402)
T TIGR00897 86 LLWCVGHAAFIVFGLG----H--------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN--- 138 (402)
T ss_pred HHHHHHHHHHHHHhcc----C--------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---
Confidence 9988887655322110 0 245667788888999888777777788889999887
Q ss_pred hhhhhhHHHHHHHHHHHHH-HHHhHHHhhhhcccchhHHHHHHHH
Q 009990 224 KTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAI 267 (520)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~-~i~~~i~~~l~~~~g~~~~f~i~~i 267 (520)
|+++.++++.+.++|. .++|.+++++.+..||+..++....
T Consensus 139 ---~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 139 ---LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999999996 6899999998888887655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-17 Score=169.80 Aligned_cols=143 Identities=20% Similarity=0.296 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcc
Q 009990 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (520)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++..+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------------------------- 123 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------------------------- 123 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 88999999999999999999999999996 9999999999999988888765411
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH---hhhhcccchhH
Q 009990 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGS 260 (520)
Q Consensus 184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~---~~l~~~~g~~~ 260 (520)
..+.+.++++|++.|+|.+...+...++++|.+++++ |+..+++++.+.++|..+++.++ +.+.+..+||+
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 0234678899999999999999999999999999988 99999999999999999999998 66667789999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009990 261 AFGALAIAMGISNMLFFI 278 (520)
Q Consensus 261 ~f~i~~i~~~i~~~~~~~ 278 (520)
.|++.++..++.++..++
T Consensus 198 ~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 198 PLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999866655554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=158.85 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
.+.++.+++..++..++...+...++.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345788888888888888778888888876 6899999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+.+.++ .+...++++|++.|++.+...+...+.+.+..++++ |
T Consensus 83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 888877764 357788889999999999888888888888888776 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
++.+++++.+.++|..+|+.+++++.+...+
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999988765433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=157.85 Aligned_cols=174 Identities=7% Similarity=0.047 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
.|+|..+..++..++.....+.+...++ .+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4566777777777777666655555554 46678999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+++.+. .+...+++.|++.|++.+...+...+.+.|.+|+++
T Consensus 82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----- 128 (394)
T PRK03699 82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----- 128 (394)
T ss_pred HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence 88888877764 356778889999999999888889999999998877
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhc-ccchhHHHHHHHHHHHHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-~~g~~~~f~i~~i~~~i~~~~ 275 (520)
|+...+..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus 129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8999888888888999999999888754 568999998877665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-15 Score=154.70 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.++.+.+..++..+..+.....++ .+.+++|++..+.++..+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 3456666677777777666666554 56678999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+++.++ .+.+.+++.|++.|++.+...+....++.|.+++++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 98887765 457888899999999999888888888999998877 88
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
+.++++..+..+|..+++.+++++.+..+||+.|++.++..++..+..
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999888899999998877655544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=161.78 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=123.9
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccc
Q 009990 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (520)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 172 (520)
...+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.+++.++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 3456679999999999999999999999999999999996 99999999998888888877664
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 009990 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~ 251 (520)
.+...+++ .|++.|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.++++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 23444543 4578899888765666678888885 55 8999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 252 l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+.+.+|||+.|++.+++.+++.+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9998999999999887766555444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=156.38 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=141.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
.+|.++++.+..++..+........+ +++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 45556666666666666654444444 455679999999999999999999999999999999996 9999999999988
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+++... .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8888877654 346778889999999988877888888899888766
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~ 275 (520)
++...+++..+..++..++|.+++++.+..||++.|++.++..++..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999988889999999877655444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=158.33 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=122.3
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q 009990 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (520)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 170 (520)
...+|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.+....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 99999999999999999999999999999996 99999999999998888877664110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHhHHH
Q 009990 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-i~~~i~ 249 (520)
..+...+++.+++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|.++
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0245677888899999999888888889999999888 99999999999998864 455544
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 250 ~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
..+....+|++.|++.++..++..++.
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 333334589999998776655544333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-15 Score=153.54 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++.++...++..++...+...++. +.++++.+....+++.+.+.+...++.+++|+++||+ |||++++++.++..++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 3455666777777765444444444 4678999999999999999999999999999999996 9999999999999888
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++.+. .+. ++.|++.|++.+...|...+++.|.+|+++ |++
T Consensus 82 ~~~~~~~----------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~ 124 (393)
T PRK11195 82 CLLMLFG----------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK 124 (393)
T ss_pred HHHHHHH----------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 7766543 122 677889999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~ 272 (520)
+.++.....++|..+||.++|++.+. .|+..+.+.+.+.+++
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999874 4776666555444333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=159.90 Aligned_cols=225 Identities=19% Similarity=0.144 Sum_probs=164.7
Q ss_pred ccccccchhhhhhhhhhhhcCCCccCCCCccccC-CCCCcccccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc
Q 009990 22 HQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVH-GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100 (520)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~ 100 (520)
.+++|++.+.++.++.+.|+.|.+.++++...-. .+-. .+...+++ .+|++.++.++..+..|++..|.|.|+.++.
T Consensus 206 ~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~-~~YVL~Nk-~iW~la~a~vfvYivR~gi~dW~p~YL~e~k 283 (448)
T COG2271 206 LRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF-VKYVLKNK-LIWLLALANVFVYVVRYGINDWGPLYLSEVK 283 (448)
T ss_pred hCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH-HHHHHcCh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 3567888888877665533233221111100000 0001 12223333 6899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH-HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCC
Q 009990 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (520)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~-GR~~~i-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
|+|..++++..+.|..+...++++.||+|||++ |||... ++++++..++.+.+.+. |+
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------~~------------- 343 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------PN------------- 343 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------CC-------------
Confidence 999999999999999999999999999999998 766544 34444444444444443 22
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHhHHHhhhhcccc
Q 009990 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~g 257 (520)
.+..+..+.++.+|+...+++-.+.....|..|.+. -|++.++..++..+ |+.++....+++.|.+|
T Consensus 344 ------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 344 ------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred ------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 356777788889999999999888888899998887 67777777776667 99999999999999899
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 009990 258 WGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 258 ~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
|...|.+..++.+++.++++...
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 99999887777666666555443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=163.49 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=126.8
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccc
Q 009990 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (520)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 172 (520)
...+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++.+.... .
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--~---------- 118 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS--G---------- 118 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc--c----------
Confidence 4567789999999999999999999999999999999996 99999999888887777666542100 0
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 009990 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (520)
..+...+++.|++.|++.+...+....+++|.+|+++ |+++++++..+.++|..+++.+..++
T Consensus 119 -----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 119 -----------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred -----------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence 0357888999999999999988999999999999998 99999999999999999999988776
Q ss_pred hccc---chhHHHHHHHHHHHHHHHHHH
Q 009990 253 QMEH---GWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 253 ~~~~---g~~~~f~i~~i~~~i~~~~~~ 277 (520)
.... +|+..|.+.++..++..++.+
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 6543 588888776665544433333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-15 Score=152.92 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHH-HHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~LsDr~~GR~~~i~-~~~~~~~l 148 (520)
.+..++..++..++...+...++.|+++++|++.++.+++.+.+.. +..++++++|+ +||+ ||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence 4556666888888887788899999999999999999998776544 55566666666 9996 9888754 45554445
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh-
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL- 227 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r- 227 (520)
+..++.++ .+...+++.+.+.+...+...+....+..|..++++ |
T Consensus 95 ~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 140 (393)
T PRK15011 95 ACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------RE 140 (393)
T ss_pred HHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------ch
Confidence 55555443 234444443333333334556777788888666544 4
Q ss_pred -hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 228 -DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 228 -~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+...++.+.+.++|..++|.+++++.+..|||+.|++.++..++..+.++.
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 334467888899999999999999998899999998877665555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-15 Score=158.06 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=127.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCC
Q 009990 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (520)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
+++++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999996 9999999999988888776654311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc-c
Q 009990 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (520)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-g 257 (520)
.+...+++.|++.|++.+...+....+++|.+|+++ |+++.++++.+.++|..+++.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 235678889999999999999999999999999988 999999999999999999999999998884 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 009990 258 WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 258 ~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=151.81 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=132.8
Q ss_pred HHHHHhhHHHHHHH--hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 009990 82 RMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (520)
Q Consensus 82 ~~~~~~~~~~l~~y--l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~ 159 (520)
.+.+.....++|.+ +.+++|.+..+.++..+++.++..++.++.|+++||+ |||+++.++.++..++.+++.+.
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--- 91 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--- 91 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh---
Confidence 33333444444443 6789999999999999999999999999999999996 99999999998888888777664
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 009990 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (520)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (520)
.+...+++.|++.|++.+...+...+++.|.+++++ +.+.++..+...+
T Consensus 92 -------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 140 (401)
T PRK11043 92 -------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVA 140 (401)
T ss_pred -------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence 346778888999999988877788889999999877 7888888888888
Q ss_pred HHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 240 lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+|..++|.+++++.+..||++.|++.++..++..++.+.
T Consensus 141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 141 LSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999998877666555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=149.39 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+....+..+....+.......++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 33444455555555544444444 55678999999999999999999999999999999996 99999999999988888
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++... .+...+++++++.|++.+...+...+++.|.+++++ |++.
T Consensus 83 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~ 128 (392)
T PRK10473 83 LLCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKV 128 (392)
T ss_pred HHHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHH
Confidence 877664 345677888999999999888889999999999888 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.++.+...++|..++|.+++++.+..||++.|++.++..++..++.+.
T Consensus 129 ~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 129 LSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888889999998887766555544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-15 Score=154.33 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=131.0
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccccc
Q 009990 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (520)
Q Consensus 95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
.+.++++.+...+++.++++.++..++.+++|+++||+ |||++++.+.+++.++.+++.++
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------ 101 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------ 101 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc------------------
Confidence 36678999999999999999999999999999999996 99999999999999988887765
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
.+...++++|++.|++.+...+.....+.|.+++++ +.+.++++....++|..+||.+++++.+
T Consensus 102 ----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 102 ----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999988766677788899999887 8899999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 255 EHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 255 ~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
..||++.|++.++..+++++..+...+
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999999888776666554443333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=153.79 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhhHH---HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.++...++...++|.+.- ...+++.++.++|.++.+.+.+.+.+.+.++..+.|.++||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 4455566677777776553 345688889999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
..+++.++ .+...+.+..++.|...|.-.|.....++..|+.++ ||
T Consensus 107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 99999886 457788888899999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHH--hhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~--~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
+..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..++.+
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~ 203 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL 203 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8998888999999999887644443333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=152.21 Aligned_cols=178 Identities=10% Similarity=-0.107 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+|.+....++...+...+..+++.|+++++|++..+.+++.+++.+...+++++.|+++||+ |||+.++.+.....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 467777778888888878888999999999999999999999999999999999999999996 9999998887766655
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
...+......+.. . ......+++++++.+++.+...+....+..|.-+ + ++.
T Consensus 82 ~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLL-Q-------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHH-H-------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 4433221100000 0 0122344556777888888877787777766422 2 334
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
.++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5667777789999999999998865 5999999888776655544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=148.93 Aligned_cols=158 Identities=7% Similarity=-0.095 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLTG 152 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~-~~lg~~~ 152 (520)
+.+..++..+++-...+.++.|+. ++|++..+.+.+.+++.+...+++++.|+++||+ ||++.......+ ..+..+.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence 444455555555445677888885 7899999999999999999999999999999996 985433222111 1111111
Q ss_pred HHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
+... . ++.+.+++.+++.+.+.+...|...++..+. .++ |++.++
T Consensus 87 ~~~~-------~--------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g 131 (382)
T TIGR00902 87 FSAG-------A--------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG 131 (382)
T ss_pred HHHh-------h--------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence 1111 0 3567788888888888888888888876543 233 788899
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
......++|..++|.+++++.+..||+..|++.++.
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 999999999999999999999999999998876554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=151.16 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=127.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHH-HHHHHHH-----HHHHHHHhHHHHHhhhccchhHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFL-----GISQASSVLGGFLADAYLGRYWTI 139 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~-~~~~~~~-----~~~~~~~~~~G~LsDr~~GR~~~i 139 (520)
.|++.....++..+++.+....+.. +.+.+.++++.+..+.+ +..+... +...++.++.|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHH
Confidence 3455677777788888887765554 45578888998776644 3332222 22246788999999996 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC
Q 009990 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (520)
Q Consensus 140 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (520)
+.+.+++.++.+++.++.....+. ......++++|++.|++.+...++...+++|.+|++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 999999999998888751100000 000125688999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhh--------hcccchhHHHHHHHH
Q 009990 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI 267 (520)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l--------~~~~g~~~~f~i~~i 267 (520)
+ |++..+++....++|..+++.+++.+ .+..|||+.|++.++
T Consensus 150 ~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 150 R------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred c------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8 99999998888888877777777655 246799999987543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=149.90 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
.+...+..++.....+.....++.++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44555566666666666777777789999999999999999999999999999999999996 99999999999999998
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
+++.+. . +...++++|++.|++.+. .+...++++|.+++++ |+.
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 887765 3 567888899999998654 4567889999999888 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc----------ccchhHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~----------~~g~~~~f~i 264 (520)
..+++....++|..+++.+++.+.. ..+|++.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887777887777777765543 2379999843
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=150.77 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=131.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+++.+.......++..+..+.+.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 444555555555555555554443 34477889999999999998899999999999999999996 9999999999888
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+++.++ .+...++++|++.|++.+... ....++++.+|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence 8887777664 345677788999999887654 34567899999888
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhh----c-----ccchhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~----~-----~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|+.+.++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777778777766665442 2 248999999887766555444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=169.20 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChH--HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3455556666666666655556666677667776543 467888899999999999999999996 9999999998877
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
+++.++..++... .+...++++|++.|++.+...+...++++|.+++++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 7666655443210 246788899999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (520)
|+++++++..+.++|.++|+.+++++...
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=147.40 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=133.4
Q ss_pred hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 167 (520)
....++.+. +++|++..+.+.+.+++.++..++.+++|+++||+ |||+++.++.++..++.+++.+.
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345556555 57999999999999999999999999999999996 99999999999999888887764
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (520)
.+...+++.+++.|++.+...+...+++.|.+++++ |++.+++.+....+|..++|.
T Consensus 77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999999999988999999999999887 999999999999999999999
Q ss_pred HHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 248 i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+++++.+..+|++.|++.++..++..++...
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999988889999998877666555444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-14 Score=150.08 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+..+....++.+++.......++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 3445556667777776554444444444 5567888888999998999999999999999996 9999999999888776
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+.+++.... .. .+.+.+++..++.|++.+...|...+++.++.|+++ ...
T Consensus 89 ~~~L~~l~~~----~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFF----GL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHh----Cc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 6665554221 10 356777788889999999999999999999999988 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+.++.....|+...+||.++|.+....|-.+.|.+.+++.++.++++...
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999888888889998887766655544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-14 Score=148.92 Aligned_cols=151 Identities=13% Similarity=-0.031 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+..+.+..+...+........+| .+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~ 104 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 445555555555566544444444 56899999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++..... . .+...++++|++.|+|.|...+..+++++|..++++ +..
T Consensus 105 ~~l~~~~~~-----a--------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~ 153 (438)
T PRK10133 105 AALFWPAAE-----I--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_pred HHHHHHHHh-----c--------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHH
Confidence 987642211 0 357888999999999999999999999998765554 555
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQ 253 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~ 253 (520)
..+++.....+|..+|+.+++.+.
T Consensus 154 ~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 154 RLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888876543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=159.76 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=126.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 009990 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (520)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (520)
+.++.+.....+..+++.++..+++++.|+|||| +|||+++++++++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4566788888999999999999999999999999 599999999999999999888876
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 009990 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
.+...+++.|++.|++.++...+...+++|.++++. |+.+.++ ......++.+++.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 578999999999999999999999999999999999 9999999 88888889999999999877 8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009990 258 WGSAFGALAIAMGISNML 275 (520)
Q Consensus 258 ~~~~f~i~~i~~~i~~~~ 275 (520)
||+.+++..+..++.++.
T Consensus 233 Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999887776666555
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=150.45 Aligned_cols=178 Identities=13% Similarity=0.084 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
|+.++..++.............. ...++++ +|++..+.+++.+++.++..++.++.|+++||+ |||+.+.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFAL-AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHh-hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 33444444433333333322333 3456665 599999999999999999999999999999996 99999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+++.+.... . .+...+++.+++.|++.+...+.....+.|.+|+++ |
T Consensus 103 ~~~~~~~~~~~~----~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPWA----T--------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhccccc----c--------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 887776543100 0 235567788889999999888888899999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhh-cccchhHHHHHHHHHHHHHHHHHHh
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
++++++++...++|+.+++.+.+.+. ...+||+.|++.++..++..++.++
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877544 3468999999887776655444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=152.53 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=135.6
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 009990 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (520)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (520)
.+++++..+-+.+.+.+..+..++++.+|+++||+ |-|+++.++.++..+++++..+++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 36889999999999999999999999999999996 9999999999999999999988743
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc-c
Q 009990 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-H 256 (520)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-~ 256 (520)
.+...+++.|++.|++.|...|++..+.+.+.|+++ |+++.++.+.+..+|.+++-.++|++.+. .
T Consensus 126 -------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~ 192 (466)
T KOG2532|consen 126 -------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSL 192 (466)
T ss_pred -------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence 234477899999999999999999999999999999 99999999999999999999999999888 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 009990 257 GWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 257 g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
||++.|++.++..++..++++..
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887777776654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=151.11 Aligned_cols=179 Identities=9% Similarity=-0.091 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..+...+..++..++.+.+.+.++.|+++++|++..+.+.+.+.+.+...+++++.|+++||+ |||++++++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 455666677777777777899999999999999999999999999999999999999999996 9999998876665554
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
...+......+.... ......+++.++.+.+.....+... +..+... +.++.
T Consensus 90 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~g~ 141 (420)
T PRK09528 90 FGPFFIYVFAPLLQY--------------------NILLGAIVGGIYLGFGFLAGAGAIE----AYIERVS----RRSGF 141 (420)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhhhhccchhhhh----hHHHHHH----hhccc
Confidence 432221100000000 0011112222223333223223332 2222111 11566
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+.
T Consensus 142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 7777778889999999999998876 58999998877666655555444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-14 Score=144.83 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=119.5
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 169 (520)
..+.+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.. ..
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 3345567789999999999999999999999999999999996 99999999998877776655 32
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
.+...+++.|++.|+|.+...+..+....|.++ ++ |++..++++...++|..+++.++
T Consensus 85 ---------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 85 ---------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888999999999888888888888886 45 89999999999999999999999
Q ss_pred hhhhccc--chhHHHHHHHHHHH
Q 009990 250 VYIQMEH--GWGSAFGALAIAMG 270 (520)
Q Consensus 250 ~~l~~~~--g~~~~f~i~~i~~~ 270 (520)
+.+.+.. +||+.|.+.++..+
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Confidence 8887654 38988876655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=162.47 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=110.5
Q ss_pred hhhhcCCCh-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH--HHHHHHhhhcccccCCCCCCcccc
Q 009990 96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGITLCATMKVFMPNQDNCDRI 172 (520)
Q Consensus 96 l~~~~~~s~-~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~ 172 (520)
++...+.+. ...++..+++.+...++.+++|+++||+ |||+++.....+.++ ...++.+..
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 333444433 3466778889999999999999999996 999976442222221 111111110
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 009990 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (520)
.+.+.+++++++.|++.+...|...+++.|.+++++ |+.+.++..++.++|.++||.++|++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999988 99999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHH
Q 009990 253 QMEHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 253 ~~~~g~~~~f~i~~i~~~i~~~~ 275 (520)
....+|++.|.+.+++.++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHHH
Confidence 99889998884444444444333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=145.26 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhH
Q 009990 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (520)
+.+++++.++.++++.++|+++||+ |||..++++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 4677889999999999999999996 99999999999999988888776321 357
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH-hh-hhcccchhHHHHHH
Q 009990 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VY-IQMEHGWGSAFGAL 265 (520)
Q Consensus 188 ~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~-~~-l~~~~g~~~~f~i~ 265 (520)
.+++++|++.|+..|......+-++.|..|.+- ||..-.+..++..+|..++..++ .. +.....|.+.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 899999999999999999999999999999999 99999999999999999986655 23 33445699988888
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccc-cCCCcccccCCcccccC
Q 009990 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHT 338 (520)
Q Consensus 266 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 338 (520)
++..++.+++..+ +||+|+| ++. +++.++|++..++++..
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~ 231 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGK 231 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCC
Confidence 8777766666554 5788888 776 56666666666555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-13 Score=140.83 Aligned_cols=172 Identities=11% Similarity=0.023 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++.+.+.-+...+.. ++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 344444444444444 4554556677899999999999999999999999999999999996 99999999999999998
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++..+.. ..+...+++++++.|+|.|...+..++++.+..|+++ +++.
T Consensus 83 ~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~ 131 (410)
T TIGR00885 83 FLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR 131 (410)
T ss_pred HHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence 77654311 0356788899999999999999999999999988877 8888
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhc--------------------------ccchhHHHHHHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~--------------------------~~g~~~~f~i~~i~~~i~~~~ 275 (520)
.++.+...++|..++|.+++.+.. ..+||++|.+.++..++..++
T Consensus 132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887642 136999998777655444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-13 Score=139.14 Aligned_cols=179 Identities=8% Similarity=-0.064 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
|.+++..+. +...+..+.+.+.+..++.+ ++|++..+.+++.+++.+...++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 455554444 44445555555556666655 7999999999999999999999999999999996 99999999999998
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
+.++.+.+..... ..+...+++.+++.|++ +...+.....++++||+++ |
T Consensus 112 i~~~~~~~a~~~~-----------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------r 161 (462)
T PRK15034 112 IPCVWLGIAVQNP-----------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------Q 161 (462)
T ss_pred HHHHHHHHHHccc-----------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------h
Confidence 8888777641100 02577889999999998 6677889999999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~-----~-------------~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+++.+++....|+|..+++.+...+. . ..+|+.++++..+..++..++.++.
T Consensus 162 G~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 162 GSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986666666655555443322 1 2346776666666555555555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=141.45 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=112.1
Q ss_pred HHHHHhhhhcCC--ChHHHHHHHH--HHH---HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009990 91 NMVTFMFYVMHK--SFADSSNAVN--NFL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (520)
Q Consensus 91 ~l~~yl~~~~~~--s~~~a~~~~~--~~~---~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~ 163 (520)
....++.++... ++++.+...+ .+. +...++.++.|+++||+ |||+++.++.++..++.+++.+.......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 91 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI- 91 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence 345555555443 3444443332 222 33346889999999996 99999999999999998887765210000
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 009990 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (520)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (520)
.......++++|++.|++.+...+...++++|.+++++ |+...++...+..+|..
T Consensus 92 -------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 146 (394)
T TIGR00883 92 -------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLL 146 (394)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHH
Confidence 00112357888999999999999999999999999888 99999999999999999
Q ss_pred HHhHHHhhhh--------cccchhHHHHHHHHHHHHHH
Q 009990 244 VAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (520)
Q Consensus 244 i~~~i~~~l~--------~~~g~~~~f~i~~i~~~i~~ 273 (520)
+++.+...+. +..+|++.|.+.++..+++.
T Consensus 147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 9988876553 35689999987666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-14 Score=150.17 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchh
Q 009990 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (520)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (520)
+.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 347999999999999999999999996 99999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc-cchhHHHHH
Q 009990 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 264 (520)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-~g~~~~f~i 264 (520)
+..+++++|++.|+|.|+.....+.+++|..|.+. |+...+.+....++|..++..++....+. .+||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 78999999999999999999999999999999988 99999999999999999995444444332 489988887
Q ss_pred HHHHHHHHHHH
Q 009990 265 LAIAMGISNML 275 (520)
Q Consensus 265 ~~i~~~i~~~~ 275 (520)
..+..++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77766555555
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-13 Score=138.62 Aligned_cols=155 Identities=8% Similarity=-0.020 Sum_probs=114.3
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh----HHHHHHHHHHHHHHHHHH
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGIT 154 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~----~~i~~~~~~~~lg~~~~~ 154 (520)
++..++...+...++.|++ ++|.|..+.+++.+++.+...++.+++|+++||+ ||+ +.+.+...+. .+.+.
T Consensus 14 ~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~~ 88 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAFW 88 (382)
T ss_pred HHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHHH
Confidence 3334445556677888885 6899999999999999999999999999999996 984 3322222111 11111
Q ss_pred hhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 009990 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (520)
.. . ++.+.+++.+++.+++.+...+...++..|.. ++ |++.++..
T Consensus 89 ~~-------~--------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~ 133 (382)
T PRK11128 89 FG-------A--------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKV 133 (382)
T ss_pred Hh-------c--------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchH
Confidence 11 0 35677778899899998888888888877752 23 66777777
Q ss_pred HHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHH
Q 009990 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (520)
Q Consensus 235 ~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~ 273 (520)
+...++|..+||.+++++.+.+||+..|++.++..++.+
T Consensus 134 ~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 134 RLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 888899999999999999999999999987775544433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=140.75 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhHH-HHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAI 141 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~----~GR~~~-i~~ 141 (520)
++|+.+.+++..+...+..+.....++.++. +.|.+..+.+.... .... +++.++.|+++||+ +||||. +++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence 3344566666777777777777777888876 55899888887522 2222 36889999999994 298885 657
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCh
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (520)
+.+...++...+++.. |. .+...+.+.+++.+++.+...+...++..|.+|+++
T Consensus 87 ~~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE- 140 (491)
T ss_pred HHHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence 7666666666665531 11 356677778888899999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc-ccchhHHHHHHHHHHHHHHHHHH
Q 009990 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
|+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 141 -----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 -----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 46999999988876655544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=145.62 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=130.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.+.......++..+.+|++..++|.|+++.+|++...+........++..++.+++|+++||+ |||+.+.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 455555454555666788889999999999989999988888877888888999999999999996 9999988887655
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+.+..... . .+...+++++++.+++.+...+....+..+.+|++.
T Consensus 327 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------ 375 (490)
T PRK10642 327 FVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------ 375 (490)
T ss_pred HHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------
Confidence 443333222100 0 234566677777887777666777888889999998
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|+++.++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998555566667889999999877554 666665555544444444443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=130.55 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=107.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCC
Q 009990 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (520)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
+.+-+..-++.+-+.|.+...+.++..|.+|||| |||++++++++..++.+++.+.+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S---------------------- 118 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS---------------------- 118 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3444556788999999999999999999999997 99999999999999988888876
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
.++..++++|++.|+..|-. ..+-++++|.+++++ |+.+++....+..+|.++||++++++..
T Consensus 119 ------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 ------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 56777788899999998775 778899999999988 9999999999999999999999999977
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=133.61 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=116.7
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHhhhcccccC
Q 009990 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVFM 163 (520)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~----~GR~~~i-~~~~~~~~lg~~~~~~~~~~~~~~ 163 (520)
.......+.+++|+|.++.+..... .+...+ .++.|+++||+ +||||.+ +.+.++..+....+.+..
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------ 78 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------ 78 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence 3434445556889999999988654 333333 88999999996 4899974 566666666655554431
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 009990 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (520)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (520)
+. .+...+....++.+++.+...+...++++|.+|+++ |+.+.++...+.++|..
T Consensus 79 ~~-------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 133 (356)
T TIGR00901 79 PS-------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGML 133 (356)
T ss_pred cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHH
Confidence 10 234455555566778888888999999999999888 99999999999999999
Q ss_pred HHhHHHhhhhcccc--------hhHHHHHHHHHHHHHHHHHHh
Q 009990 244 VAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 244 i~~~i~~~l~~~~g--------~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+++.+++++....| ||..|++.+++.++++++.++
T Consensus 134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777 999999888776665554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-13 Score=139.48 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=125.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHHHHHHHHHH
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~-~i~~~~~~~~lg~~~~~ 154 (520)
+...+....+..+++.|+++++|++...++.+.++..+...+..++.|+++||. +|||| .++++.....++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 444555556778899999999999999999999999999999999999999984 58755 56677777777766665
Q ss_pred hhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 009990 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (520)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (520)
... .... ......+++.+++.+++.+.......++.+|..++.++ |++..++.
T Consensus 89 ~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----R~~~~~~~ 141 (437)
T TIGR00792 89 TTP---DFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE-----RESLSTFR 141 (437)
T ss_pred hCC---CCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH-----HHHHHHHH
Confidence 431 0000 02345556666777888888778888888888754321 88888888
Q ss_pred HHHHHHHHHHHhHHHhhhh-------cccchhHHHHHHHHHHHHHHHHHHh
Q 009990 235 YLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 235 ~~~~~lg~~i~~~i~~~l~-------~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
....++|..++..+.+.+. +..+|++.+.+.++..++..++...
T Consensus 142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 8878888777666654443 2457999888777766555544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=140.10 Aligned_cols=178 Identities=16% Similarity=0.071 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.+|.+.+..++....++++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3577777888888888888899999999999999999999999999999999999999999996 988877665544443
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+..++.+.. . .+....++.+++.|++..+..........|.+|++. ++
T Consensus 337 ~~~~~~~~~------~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQH------A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHh------c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 332222210 0 123445556666775544444444466779999888 99
Q ss_pred hHHHHHHHHHHH-HHHHHhHHHhhhhc------------ccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 229 ~~~~~~~~~~~l-g~~i~~~i~~~l~~------------~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++.++.+...++ |..++|.+.|++.+ ..||+.+|++.+++.+++.+..+..
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988886 77999999999999 5689999998877777766655543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=128.34 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhH-HHHHHHHHHHHHH
Q 009990 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGL 150 (520)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~----~GR~~-~i~~~~~~~~lg~ 150 (520)
...+.+.+.+.-....+|.|+.+ .|++.++.+++..+... .+..++.|+++||+ +|||| .+.++.++..++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 33444555555567778999985 59999999988666554 68889999999995 27765 6777787777777
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
..+.+.. +. .+...+++..++.+++.+...+...++.+|.+|+++ |+++
T Consensus 83 ~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~ 131 (402)
T PRK11902 83 AAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAG 131 (402)
T ss_pred HHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHH
Confidence 7665531 10 245555666566778888888999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcc-cchhHHHHHHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~-~g~~~~f~i~~i~~~i~~~~ 275 (520)
.++...+..+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 132 AAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888875 49999999877765554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-17 Score=172.51 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchh
Q 009990 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (520)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (520)
..++..+...++..++.+++|+++||+ |||+++.++.++.+++.++..++.. ..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------------YN 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------------cc
Confidence 457888999999999999999999996 9999999999999999998887610 01
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc---ccchhHHH
Q 009990 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (520)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~---~~g~~~~f 262 (520)
+...+.++|++.|++.|+..+....++.|..|++. |+...++......+|..++..+...+.+ ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 57889999999999999999999999999999998 9999999888888988888777644433 23599888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccC
Q 009990 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 338 (520)
Q Consensus 263 ~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (520)
.+.++..++.++...+ +||+|+| ++.++|.+|+.+...++++.
T Consensus 175 ~~~~~~~l~~~~~~~~--------------------------------~pESP~w-L~~~~~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRFF--------------------------------LPESPRW-LLSKGRDEEAEKVLRKLRGK 217 (451)
T ss_pred cccccccccccccccc--------------------------------cccccce-eccccccccccccccccccc
Confidence 7776655443332221 5899999 99999988888888775543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=148.13 Aligned_cols=208 Identities=14% Similarity=0.101 Sum_probs=152.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
..+++.+.+.+....+......++.......+.++++++..+.+++.+.+.++..++.++.|+++||+ ||+|.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34555555555544555555556666667788889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccc-cC-------------CCCCCccccc--c-----ccCCCCCcc--hhhHHHHHHHHHHHHHhc
Q 009990 145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRIS--Q-----LLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~-~~-------------~~~~~~~~~~--~-----~~~~~~~~~--~~~~~~l~~~~~l~g~g~ 201 (520)
++.+|.+++++.-.+.. .. .+.+.|.... + ....|...+ ...+.+++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 99999999876421100 00 0011221000 0 001232222 124567889999999999
Q ss_pred cccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc----------------------chh
Q 009990 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (520)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~----------------------g~~ 259 (520)
+...+...+++.|.+|+++ |+..+++++.+..+|.++|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999988 999999999999999999999999886532 277
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 009990 260 SAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 260 ~~f~i~~i~~~i~~~~~~~~ 279 (520)
.+|++.+++.++..+.+++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 78888777665554444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-11 Score=128.07 Aligned_cols=166 Identities=14% Similarity=0.010 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~ 153 (520)
+.+..++...++-...+.++.|+++++|++..+.+++.+++.++..++++++|+++||+.|||+++.++.++..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34444555555544568899999999999999999999999999999999999999996345778887777776666655
Q ss_pred HhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC--hhhhhhhhhHH
Q 009990 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--KDYKTHLDRFF 231 (520)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~--~~~~~~r~~~~ 231 (520)
.+. .+...+++.+++.+++.+...+...++..+...+.. -.+...|.+.+
T Consensus 87 ~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~ 138 (418)
T TIGR00889 87 AQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVM 138 (418)
T ss_pred HHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeee
Confidence 543 235556667777787766665555554322211000 00000144444
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 009990 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~ 274 (520)
+ .+|.+++|.+++.+.....|. +|++.++..++.++
T Consensus 139 G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 139 G------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred h------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 4 378888888888774433354 45555555444443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=129.19 Aligned_cols=198 Identities=12% Similarity=0.056 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh---ccchhHHHHHH-HHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIAIF-TTI 145 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr---~~GR~~~i~~~-~~~ 145 (520)
.++.+....+...+++....++++.|+ +.+|.+...++.+..+..+...+.+++.|++||| -+||||.++++ .+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 455666666666777766667777776 6899999999999999999999999999999995 24999988875 555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
.+++.+++..+.....+... + .-+.........++++..+..++....++...++++|++|+++.+
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~--- 149 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR--- 149 (477)
T ss_pred HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence 55555655553211000000 0 000000011234455555666788888888999999999988722
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhh--hcc-------------cchhHHHHHHHHHHHHHHHHHHhhcccc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l--~~~-------------~g~~~~f~i~~i~~~i~~~~~~~~~~~~ 283 (520)
++.+.++.....++|..+|+.++++. .+. .+.++.|++.+++.+++.++..+..+++
T Consensus 150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 46788999999999999999998865 111 1578899998888777777666654443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-12 Score=133.96 Aligned_cols=176 Identities=8% Similarity=-0.030 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G-----R~~~i~~~~~ 144 (520)
.+.++....+.+.+. +.+...++.++++++|++.++.+...+...+...+-++ .|+++||+ + ||+.++++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 344555577777777 67777888999999999999998888888888777665 99999997 6 6777777765
Q ss_pred HHH-HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh
Q 009990 145 IYL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (520)
Q Consensus 145 ~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (520)
+.. +....++.. + .......+.+++.+++.+.......++..|..+ ++++.
T Consensus 104 l~~~~~~~~l~~~-------~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~ 155 (468)
T TIGR00788 104 LGSAILYGLLPGK-------V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA 155 (468)
T ss_pred HHHHHHHHhcccc-------c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence 542 222222110 1 123334446788899999999999999999998 44221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++...++.|.+.++|..+|+.++|++.+..+|+..|++.++..++..+...+.
T Consensus 156 ---~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 156 ---GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred ---CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 45566777888889999999999999998899999998887766664443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=121.62 Aligned_cols=155 Identities=12% Similarity=0.010 Sum_probs=114.5
Q ss_pred hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 167 (520)
..+.+..-+....|.+..+..++......+..+++...|.++|++ |||+...+......+.-++-..+
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s----------- 163 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS----------- 163 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-----------
Confidence 344445556667888888999999999999999999999999996 99999888777665554443332
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (520)
.|+..+.+.+.+.++|.|+ .|...++-.+..|... |....-.. ....+|.++...
T Consensus 164 -----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 164 -----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred -----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHH
Confidence 4577888999999999999 7999999999988776 55544443 445577777777
Q ss_pred HHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 248 i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+.-.+..+.||||-.....+...+..+...+.
T Consensus 219 law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 219 LAWGVMSNFGWRYLLFTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhc
Confidence 76666677899998766665444444433333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-12 Score=131.73 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=133.8
Q ss_pred hHHHHHHHhhhhcCCChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~ 166 (520)
..+....|+.+++|++.++ .+.+.+++..++.++.+++|+++||+ |-|+++.++.+...+..+++.++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH----------
Confidence 3455677999999999999 99999999999999999999999996 99999999999999999988876
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 009990 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (520)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (520)
.++..+.+.|++.|++.|... +...++...+|+++ |+++.++++.+.++|.++++
T Consensus 113 ------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 113 ------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998 99999999999988 99999999999999999999
Q ss_pred HHHhhhhcccchhHHHH---HHHHHHHHHHHHHHhh
Q 009990 247 TLVVYIQMEHGWGSAFG---ALAIAMGISNMLFFIG 279 (520)
Q Consensus 247 ~i~~~l~~~~g~~~~f~---i~~i~~~i~~~~~~~~ 279 (520)
.+++++ ..+||++-+. +......+++++.++.
T Consensus 168 ~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 168 VLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999995 4578886543 4444455555555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=129.61 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhh
Q 009990 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (520)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~ 157 (520)
.+.....++....+++.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+..+.+...+....+...
T Consensus 225 ~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~- 302 (393)
T PRK15011 225 CTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMA- 302 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333344445567789999999999999998888877777888899999999996 99998877766555443333221
Q ss_pred cccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHH
Q 009990 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (520)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~ 237 (520)
.+...+++.+++.+++.|...+.......|.+|+ + ++++.++++..
T Consensus 303 ---------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~ 348 (393)
T PRK15011 303 ---------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNT 348 (393)
T ss_pred ---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHH
Confidence 2344455566666666666556666777888874 4 68899998888
Q ss_pred HHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 238 ~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
.++|..+++.++|++.+..||+..|++.+++.++++++.+..
T Consensus 349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998899999988777776666655543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=128.74 Aligned_cols=183 Identities=13% Similarity=-0.004 Sum_probs=131.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
++++....+....++..+.+|.+..+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444445455566677788888899999999999999887665555556666778888999999996 999998888766
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5554433332210 00 123333445556677777778888999999999987
Q ss_pred hhhhHHHHHH-HHHHHHHHHHhHHHhhhhccc--chhHHHHHHHHHHHHHHHHHHhh
Q 009990 226 HLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 226 ~r~~~~~~~~-~~~~lg~~i~~~i~~~l~~~~--g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|+++.++.+ .+..+|+.++|.+++++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 988888844 456689999999999998744 48888877777777666665544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-11 Score=121.27 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=148.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+.++|.+++..+ .+...+..+.+.+.+..++++++|+|+.|.+++..+-.+...+..++.|.+.||+ |.|++..++.+
T Consensus 10 ~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 344555554444 4444566666778888899999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+.++-.+.++++... .+.+.+++..++.|++.+ ..+...+.++..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 999988888876331 233677777888998744 45788899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc---hhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g---~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
.|.+.+++. ..|+|..+...++..+....| |+....+..+.+++..+++++..+
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999988 899999999999999888888 898888888888877777666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=130.46 Aligned_cols=180 Identities=16% Similarity=0.104 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G--R~~~i~~~~~~~~ 147 (520)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45666666666667777788899999988999999999999999999999999999999999632 2332222222222
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
+..+.+.+. +. .+....++..+.+|++..+.........+|.+|++. |
T Consensus 324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 222221111 00 112222333334444433333344556788888777 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++..++.+...++|..++|.+.+++.+..||+..|++.+++.+++.++.+...+
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888777666655544333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=122.96 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~-~i~~~~~~~~l 148 (520)
.++...+..++..........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344455556666666777778888899888899999999999999999999999999999996 9999 99999998888
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+.+... .+...+++..++.+++.+...+...++..|.+|+++ |+
T Consensus 255 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~ 300 (352)
T cd06174 255 GLLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RG 300 (352)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HH
Confidence 88877764 235667778889999999999999999999999877 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
+.+++++...++|..+++.+.+++.+..+|++.|.+.++..+++.+...
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999888999999988887777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=126.39 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=130.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 009990 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (520)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~ 159 (520)
+..++++.+..+++.|+.+ .|++ ..+.....+.++..++.++.|+++||+ |||+.+..+..+..++.+++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence 3345555666777888764 4553 345566777788888999999999996 99999988888777777666553
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 009990 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (520)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (520)
.+...+++..++.|++.+...+.......|.+|++. |++.+++++...+
T Consensus 300 -------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (399)
T PRK05122 300 -------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD 348 (399)
T ss_pred -------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 234456667788999988888888888888888777 9999999999999
Q ss_pred HHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 009990 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (520)
Q Consensus 240 lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~ 286 (520)
+|..+++.+.|++.+..||++.|++.+++.++++++....+++.+++
T Consensus 349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999988999999988877777776666555544443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-11 Score=124.34 Aligned_cols=180 Identities=12% Similarity=-0.016 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~-i~~~~~~~~ 147 (520)
+.++...+..++.....+.+..+++.|+.+.+|.+..+++.......+...++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3566677777888888888889999999999999999999999999999999999999999996 88861 111111111
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.++..+..... +. ...... .+...+++.+..+..+...++.+|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~---~~------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFAT---NY------------------VNIPYA-ALALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHh---cc------------------chhHHH-HHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 1111111110000 00 012222 223333333333367899999999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~ 277 (520)
++.+++++...++|..++|.+.+++.+..| |++.|.+.+++.+++.++.+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 99999887777666655543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=125.93 Aligned_cols=169 Identities=16% Similarity=0.088 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
.+.+.+..++..+.......+.+.|. ++++.+..+.+.....+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 33344444444444444555566665 56889988888899999999999999999999996 99999999888888877
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++.+. ++ .+...+++..++.+++.+...+..+++..|.+|+++ |++.
T Consensus 285 ~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~ 332 (377)
T TIGR00890 285 AAMLFI-------PM-------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN 332 (377)
T ss_pred HHHHHc-------cc-------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence 766543 10 122334455567788888877888899999999888 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~ 273 (520)
+++++...++|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988777665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=127.80 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++.+.+..++..+..+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 455566666666677778889999999999999999999999999999999999999999996 9999888777666555
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
..++... .+...+.+..++.|++.++..+...++..+..+.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 12334444556778877777777777888877643 345
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
..++.+...++|..++|.+.|++.+..|++..|++.+++.+++.++.+.
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 6677777888999999999999999899999988777766666554433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=129.31 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+.++......++.....+.+..+++.|+++++|.+..+++.......++..++.+++|+++||+ |||+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466666677777788888888999999989999999999989999999999999999999996 999987765554443
Q ss_pred HH-HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 149 GL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 149 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
.. ..+.... .+ .+...+++..++.+++.+...+...+++.|.+|++. |
T Consensus 298 ~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 346 (394)
T TIGR00883 298 LAVPLLMALL------DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R 346 (394)
T ss_pred HHHHHHHHHh------cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence 32 2221110 00 134455566677788888888899999999999988 8
Q ss_pred hhHHHH-HHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHH
Q 009990 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (520)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~ 269 (520)
++++++ +..+..+|..++|.++|++.+..| |++.++..+++.
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 888887 455667899999999999999888 887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=123.69 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=124.4
Q ss_pred HHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009990 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (520)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~ 162 (520)
........+++.|+++++|.+..+.+.......+...++.+++|+++||+ |||+.+.++.++..++.+.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------ 285 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD------ 285 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH------
Confidence 33444556778899999999999988887777777778889999999996 99999888776655554443332
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 009990 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (520)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (520)
.+.+.+++..++.+++.+...+....+..|..|+ + +++++++++...++|.
T Consensus 286 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 286 ----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGW 336 (375)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHH
Confidence 2345555666777888887777888888888875 3 5688999999999999
Q ss_pred HHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 243 ~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.++|.+.+++.+..||+..|++.+++.+++.++...
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999999999999889999999888777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=131.13 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=121.6
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 169 (520)
.....++.+++|-++ ...++...+.+...+..++.|.|||. ||||..++.+.++.++|.++.+.+
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 445568888898864 45677788899999999999999997 599999999999999999998865
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
.+...++.+..+.|+|.|... .....++|..|.+. |..+..+......+...+++.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 568889999999999977654 55667899999888 87777766665556666777777
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 250 ~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
..+..+.+|||.|++.++...+++++..+
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 76666678999999998876666655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-11 Score=134.06 Aligned_cols=133 Identities=9% Similarity=-0.002 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHH
Q 009990 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (520)
..+..++..++.+++|+++||+ |||++++++.++..++.+++.+. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 4455677889999999999996 99999999999888887777654 123445
Q ss_pred HHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHH
Q 009990 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (520)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~ 270 (520)
++.+++.+++.++..+...++++|++|++. |++++++.+....+|+++||.+++++.+. +...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 555667777777778889999999999988 99999999999999999999999988664 45667777777666
Q ss_pred HHHHHHHhh
Q 009990 271 ISNMLFFIG 279 (520)
Q Consensus 271 i~~~~~~~~ 279 (520)
++.++.++.
T Consensus 725 l~~ll~~~L 733 (742)
T TIGR01299 725 CGGLLALKL 733 (742)
T ss_pred HHHHHHHhC
Confidence 655555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-11 Score=125.95 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH-HHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~-GR~~~i-~~~~~~~ 146 (520)
+.++...+..++.....+++..++|.|+++++|++..+++.....+.++..++.+++|+++||+. |||+.. .....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 35667777777777777888899999999999999989888888888888999999999999952 344332 2222233
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+++.+. +. .+....+++.++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 3333322221 00 122333344445555443333344456779999888
Q ss_pred hhhHHHHHHHHHHHHHHH-HhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i-~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++++++++...++|+.+ +|.+.|++.+..||++.|++.+++.+++++.....
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888654 79999999999999999988777666665554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=123.76 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=126.1
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~ 155 (520)
++..+....+...++.|+.+..+.... ..+.+..++.++..++.++.|+++||+ |||+.+.++..+..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333444445566777888765443322 234455556677788888999999996 9999999888877766665544
Q ss_pred hhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHH
Q 009990 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (520)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (520)
. .+...+++.+++.|++.+...+...++..+..+++. +++.+++++
T Consensus 308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 353 (408)
T PRK09874 308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ 353 (408)
T ss_pred h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence 3 234566677788899999988999999988888877 899999999
Q ss_pred HHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 236 ~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
...++|..+||.++|++.+..||++.|++.+++.+++.+..+.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877776665544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=120.89 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
.+.+.+..++..+.++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4455555566677888889999999976 899999999999999999999999999999995 99999988887777776
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CChhhhhhhhh
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~ 229 (520)
+++... + .+...+. .++.|++.+...+.......+.+++ +. +++
T Consensus 285 ~~~~~~-------~--------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~ 329 (393)
T PRK09705 285 CGFIWL-------P--------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK 329 (393)
T ss_pred HHHHHc-------c--------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence 654432 1 1111222 2356777777777777777788764 34 889
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
.+++.+...+++..++|.+.|++.+..| |...|++.+++.++..+..+...++
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999876 8888888777766666665554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.5e-11 Score=122.49 Aligned_cols=169 Identities=10% Similarity=0.000 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~ 153 (520)
+....++.....+.+..+++.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+..+.+...++.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 3333444455666777788888864 799999999999999999999999999999996 99999887666655555544
Q ss_pred HhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHH
Q 009990 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (520)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (520)
... .+...+++..++.|++.++..+...++..|.+|++. |++..++
T Consensus 303 ~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 348 (406)
T PRK11551 303 AAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA 348 (406)
T ss_pred Hhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence 432 123344555567788777778888999999999988 9999999
Q ss_pred HHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 009990 234 FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~ 278 (520)
++....+|..++|.+.|++.+..+ |...+++...+.+++.++.+.
T Consensus 349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654 555565555555444444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=125.03 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=142.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCC
Q 009990 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (520)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
.++-++++.+++...+.+...+..++.|.+.||+ |+|-.+++|+++....++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4566778999999999999999999999999996 99999999999999999999986
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
..+++++++|.+.|+|.+...++..++++|.||++.. |++.+++.-....+|-.+||..+|.+.+..|+
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 4578999999999999999999999999999998774 89999999889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccccc---CCCCChhhHHH
Q 009990 259 GSAFGALAIAMGISNMLFFIGTPLYRHR---LPGGSPLTRVA 297 (520)
Q Consensus 259 ~~~f~i~~i~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~ 297 (520)
..+|.+.++..++...+.++..+..+.. .+++.|+.++.
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll 267 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLL 267 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHH
Confidence 9999999988877777766655544322 45555655543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=126.27 Aligned_cols=179 Identities=9% Similarity=-0.003 Sum_probs=129.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~ 143 (520)
..++|..+........+.... |+... ....+++++|++..+.+.+.++... ..++.+++|+++||+ |||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv-~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNL-ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 456676555555555544333 34443 4557889999999999988776443 345667789999996 9999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh
Q 009990 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (520)
Q Consensus 144 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (520)
+++.+|+++++++.... + . .+.+.+++.+++.|+|.+...+.....+.+.|| ++
T Consensus 99 ll~~iG~ll~ala~~~~-i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~--- 152 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEV-I-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN--- 152 (591)
T ss_pred HHHHHHHHHHHHHhccc-c-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---
Confidence 99999999988852110 0 0 257788889999999998888888888899997 45
Q ss_pred hhhhhhHHHHHHHHHHHHHHH-HhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 224 KTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i-~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
|+...++......+|+.+ +++..+++. .+|+..|++.++..++..++.+
T Consensus 153 ---RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 153 ---RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999875 555555554 3577777766655544433333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=106.77 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 009990 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (520)
Q Consensus 113 ~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (520)
.+.++..++.++.|+++||+ |||+.+..+..+..++.+.+... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 45567788899999999996 99999999988888887776653 24566777
Q ss_pred HHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHH
Q 009990 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (520)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~ 272 (520)
.+++.|++.+...+...++..|.+|+++ |++..++.+....+|..+++.+.+++.+..+|++.|++.++..+++
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8889999999888999999999999988 9999999999999999999999999988889999988877666655
Q ss_pred HHHHHh
Q 009990 273 NMLFFI 278 (520)
Q Consensus 273 ~~~~~~ 278 (520)
.+....
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 555444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=125.47 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=114.7
Q ss_pred hhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009990 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (520)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~ 166 (520)
++..++|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++... ++
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-------~~- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI-------GG- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc-------cc-
Confidence 4667899999989999999999999999999999999999999996 99999888776655554433321 10
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 009990 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (520)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (520)
.+...+.+..++.++...+..+..++++.|.+|++. |++.+++++...++|+.++|
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 122333333333333333445677788899999887 99999999999999999999
Q ss_pred HHHhhhhcccchhHHHHHHHHHH
Q 009990 247 TLVVYIQMEHGWGSAFGALAIAM 269 (520)
Q Consensus 247 ~i~~~l~~~~g~~~~f~i~~i~~ 269 (520)
.+.|++.+..||+..+.+.+++.
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999988776554433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=123.23 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCh--------HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--------ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--------~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
..++..++..........+++.|+.+ .|.+. ...+...++..+...++.++.|+++||+ |||+++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 33344444444444455666778754 45443 5567888888888999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++..++.... +. ......+++..++.|++.+...+....+++|.+|++.
T Consensus 290 ~~~v~~~l~~~~~------~~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---- 341 (418)
T TIGR00889 290 AWALRFGFFAYGD------PE------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---- 341 (418)
T ss_pred HHHHHHHHHHHcC------cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence 8888766665421 00 0124556677888999988888888999999999888
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHhHHHhhhhcc------cchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 225 ~~r~~~~~~~~-~~~~lg~~i~~~i~~~l~~~------~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
|++.+++++ ....+|..+||.++|++.+. .||++.|.+.+++.+++.+++++..+
T Consensus 342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999886 46999998887776666665555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=117.95 Aligned_cols=172 Identities=14% Similarity=-0.052 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~ 152 (520)
...+..++.....++...+++.|+.+.+|.+..+++.+...+.++..++.++.|+++||+ |||+. ..+..+..++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~~~ 286 (390)
T PRK03545 209 SLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCLLL 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHHHH
Confidence 333444444555556667788899888999999999999999999999999999999996 88764 4444444444333
Q ss_pred HHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
+... + .+...+++..++.|++.+...+.....+.+..| +. |+++++
T Consensus 287 l~~~-------~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g 332 (390)
T PRK03545 287 LLPA-------A--------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA 332 (390)
T ss_pred HHHH-------h--------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence 2221 0 234556667778888877766777777777765 45 788999
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
+++...++|..+||.++|++.+..|++..|++.+++.+++++......
T Consensus 333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 998889999999999999999999999999988887777776665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=120.41 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=127.5
Q ss_pred HHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccc
Q 009990 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (520)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~ 160 (520)
..+....+..+.+.|+.+ .+++. .+.....+.++..++.++.|++.||+ ||||.+.++..+..++.+++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~---- 299 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA---- 299 (392)
T ss_pred HHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc----
Confidence 344555566777778764 46553 45556667777888999999999995 99999999888888877765543
Q ss_pred ccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 009990 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (520)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l 240 (520)
.+...++++.++.|++.+...+...+...|.+++++ |++.+++++...++
T Consensus 300 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 349 (392)
T PRK12382 300 ------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI 349 (392)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 234455667788888888888888888899998888 99999999999999
Q ss_pred HHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 241 g~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|..++|.+.+++.+..||++.|.+.+++.+++.++.+..
T Consensus 350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888777776665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-11 Score=126.23 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++.....+++..++|.|+++..|++...+++....+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666666677788889999999998999999999999999999999999999999996 6443223333222221
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+........ +. .+.....+..++.|++..+..........|.+|++. |++
T Consensus 331 ~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 381 (438)
T TIGR00712 331 TIAVIVYWMN----PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 381 (438)
T ss_pred HHHHHHHHhc----CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence 1111110000 00 112223334444555443433333456778999888 999
Q ss_pred HHHHHHHHHHHHH-HHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 230 ~~~~~~~~~~lg~-~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
+.++++...++|+ .++|.+.|++.+..||.++|++.++..+++++..+...
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988878774 68999999999988999999887776666665555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=121.35 Aligned_cols=160 Identities=12% Similarity=-0.021 Sum_probs=128.3
Q ss_pred HHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009990 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (520)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~ 164 (520)
..++..+++.|+++.+|.+....+.+.+.+.++..++.++.|+++||. ++++.+..+.++..++.+++.+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 346677889999988999999999999999999999999999999984 77888888877777776665543
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 009990 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (520)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i 244 (520)
.+....+++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+
T Consensus 310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI 363 (417)
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence 234555667777888887777777889999999887 999999999999999999
Q ss_pred HhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 245 ~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|+.+.|++.+..|++..+.+.+++.++..++....
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999998898888876666554444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=113.40 Aligned_cols=177 Identities=11% Similarity=-0.033 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHH--HHHHHHHHHHHHhHH-HHHhhhccchhHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~--~~~~~~~~~~~~~~~-G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
+..++...+.+.+.+..+...+|.|++ +.|++.++.+.. .........+.+++. ++++||+ ||||.+++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 445566667777777667778888886 569999999986 344455554444444 7789985 99998766653322
Q ss_pred H-HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 148 l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
. ....+... .+. . .....+.....+.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~--~~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALV--GPD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcC--Ccc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 22222211 000 0 112233333445556666677777777777776665
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++...+....+..+|..+|+.+.+++.+..||+..|++.++..++..+..+..
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67777777778889999999988999999999999998887766655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=114.09 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=135.5
Q ss_pred hhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009990 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (520)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~ 166 (520)
.....+.+.+++.++++..+++++...+..++.++++..|++.+|+ |+|+.+++++.++++|..++.-++.
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------- 100 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------- 100 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 4667788899999999999999999999999999999999999996 9999999999999999998864421
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh
Q 009990 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (520)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (520)
..++.++++++++++.|.+...+..++++..+.+++. -..-.++......+|+.++|
T Consensus 101 -----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 101 -----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred -----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHH
Confidence 1467889999999999999999999999999999876 45556777777889999999
Q ss_pred HHHhhhhcc-------------------cchhHHHHHHHHHHHHHHHHHHhhc-ccccccCC
Q 009990 247 TLVVYIQME-------------------HGWGSAFGALAIAMGISNMLFFIGT-PLYRHRLP 288 (520)
Q Consensus 247 ~i~~~l~~~-------------------~g~~~~f~i~~i~~~i~~~~~~~~~-~~~~~~~~ 288 (520)
.+++++..+ -.++++|.+.+....+..+.....+ ++.+...|
T Consensus 158 ~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~ 219 (422)
T COG0738 158 LLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP 219 (422)
T ss_pred HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc
Confidence 999887652 1367777665554444444444433 44433333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=121.03 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=125.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
++|+.+..+.....+..+...++..+++.|+.+++|++..+.+.+...+.++..++.++.|+++||+ |||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444344444444444555556777889999999999999999999999999999999999999996 999998887765
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..+..+.+... + .+...+.++.++.+++.++..+...+++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 53332222211 0 233445555566676667777888899999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i 264 (520)
|++.+++.+...++|..++|.+.|++.+..| |...+..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999888 8766654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=124.21 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=124.5
Q ss_pred HHHHhhHHHHHHHhhhhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcc
Q 009990 83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (520)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~ 159 (520)
+.+.....+++.|+.+.+ +.+....+.+.++..+...++.+++|+++||+ |||+.+.++.++..++.+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc---
Confidence 333334445677776543 56667778888888888889999999999996 99999999888888877776654
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHH-HHHHH
Q 009990 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV 238 (520)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~ 238 (520)
.+...+++.+++.+++.+...+....++.+.+|++. +++.++. ++...
T Consensus 313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~ 361 (420)
T PRK09528 313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK 361 (420)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence 235566677788888887777778889999999877 7776655 66778
Q ss_pred HHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 239 ~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.+|..+++.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999877766555544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=117.52 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=119.0
Q ss_pred HHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009990 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (520)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~ 162 (520)
+.+.....+++.|+++ .|.+...++...+.+.++..++.++.|+++||+ |||+.+..+.++..++.+.+. .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455678888865 699999999888899899999999999999996 999999888877777655432 1
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 009990 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (520)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (520)
....+..+++.+++.+...|...+...|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 0122334556676666677888888889888766 6777777788899999
Q ss_pred HHHhHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 009990 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 243 ~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~ 275 (520)
.++|.++|++.+++||++.|.+.+.+.++..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877766555433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-09 Score=106.74 Aligned_cols=172 Identities=18% Similarity=0.149 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
-+..+.++.+--|-...++. .+..-+.+++|+|.+.++++.++-.+...+.+++..+|+.|+ |-.+.+.+++++.++|
T Consensus 13 li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G 90 (395)
T COG2807 13 LLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAG 90 (395)
T ss_pred HHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 44445555555555554444 456678899999999999999999999999999999999995 9999999999999988
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.++=... +...++.+-++.|.|.+......++++-+-||.+. +.
T Consensus 91 ~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~ 134 (395)
T COG2807 91 ILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GL 134 (395)
T ss_pred HHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hh
Confidence 8775442 35678888889999999999999999999999765 77
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccc-chhHHHHHHHHHHHHHHHHHHhh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~-g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
.+++|..+.++|+.+++.+...+.++. ||+....+.++..++++++++-.
T Consensus 135 mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 135 MTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999998887766 79999988888888777776543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=120.28 Aligned_cols=177 Identities=10% Similarity=0.049 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchh-HHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRY-WTIAIFTTIYLAG 149 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~-~~i~~~~~~~~lg 149 (520)
-.+..+..++....+..+++.|+++++|++...++.++.+..+...+..|+.|+++||. +||| +.++++.+...+.
T Consensus 14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~ 93 (444)
T PRK09669 14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV 93 (444)
T ss_pred hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence 33445566666667778899999999999999999999999999999999999999994 4875 4555666666666
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++... |.... ......+++...+.+.+.........++.+|+.++.++ |.+
T Consensus 94 ~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~ 146 (444)
T PRK09669 94 CLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHS 146 (444)
T ss_pred HHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHH
Confidence 5544332 11000 12344555555566666667777888999998855332 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc-------ccchhHHHHHHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-------~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
..++.....++|..+++.+...+.. ..||+..+.+.+++.++..++.+
T Consensus 147 l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 147 LQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8788777777777776654432221 24677777666655544444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.7e-10 Score=116.04 Aligned_cols=169 Identities=9% Similarity=-0.069 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++...+.+...++.+.|+++ +|.+....+.......+...+..++.|++.||+ |+|+.+.++.++..+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence 45666666677777777888899999964 899999999998888899999999999999996 9999999999999998
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++... .+.+.+++...+.|+..+...+....++.+. |+++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~ 328 (382)
T TIGR00902 284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK 328 (382)
T ss_pred HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence 8877654 4567777788999999999999999999987 7766 888
Q ss_pred HHHHHH-HHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 230 ~~~~~~-~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
+.++++ ....+|..+++.++|++.+..|+ ..|.+.++..++++++.
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 888876 46789999999999999998886 56776666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-10 Score=117.00 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~-~~~~~~~l 148 (520)
.++...+..++....+++...++|.|++ ++|++..+++.....+.++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3555556667777888888899998885 5899999988888888899999999999999996 9888764 23333333
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+.+..... ... .+...+++..++.|++.+...+ ..+...+..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 3222222100 000 1344455566777877776544 3455666544 45 89
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+++++++...++|..++|.+.+++.+..||...|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999888777666655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=119.58 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=111.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+......+..++....++++..++|.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+.+..+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334444556667778889999999988999998888888888888899999999999996 9999887765443
Q ss_pred HHHHH-HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 147 LAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 147 ~lg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
.+... .+.... .+ .+...+.+..++.+++.+...+...++..|.+|++.
T Consensus 315 ~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLV------AA-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHH------cC-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 32221 111110 00 112223333444556666666667788999999988
Q ss_pred hhhhHHHHHHH-HHHHHHHHHhHHHhhhhcccchh
Q 009990 226 HLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWG 259 (520)
Q Consensus 226 ~r~~~~~~~~~-~~~lg~~i~~~i~~~l~~~~g~~ 259 (520)
|+.++++.+. +..+++.++|.+.+++.+..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9999998544 44456788999999999887753
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-10 Score=118.77 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHH-HHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTI 145 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~~i-~~~~~~ 145 (520)
..+.-.+..+..++.+..+..+++.|+++.+|++..+++.+.+...+...+..++.|+++||. +||||.. .++.+.
T Consensus 9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 334444566666777766777888999999999999999999999999999999999999995 4777755 555554
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..+..+++.... ....+ ......+++...+.+++.+...++..++..++..+.++
T Consensus 89 ~~~~~~~~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~---- 143 (448)
T PRK09848 89 LMIFSVLVFWVP--TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS---- 143 (448)
T ss_pred HHHHHHHHHhCc--CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH----
Confidence 444444332110 00000 01233344445567788888888888887777765443
Q ss_pred hhhhHHHHHHH-----HHHHHHHHHhHHHhhh
Q 009990 226 HLDRFFNFFYL-----SVTVGAIVAFTLVVYI 252 (520)
Q Consensus 226 ~r~~~~~~~~~-----~~~lg~~i~~~i~~~l 252 (520)
|.+..++-.+ ..+++..++|.+.+..
T Consensus 144 -r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 144 -RARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555444332 3445666666666543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-10 Score=119.06 Aligned_cols=175 Identities=15% Similarity=0.079 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHhhHH---HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
-|.+.++.++..+..+++.. .+-..+.++++-+..+.+++.++......+..++.+.+.||+ |.|++.+++.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 35556666666666666432 345567889999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
+|.++.+++ .+.+.+++.. ++.|+|.|.........+...|+. +
T Consensus 123 ~g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------ 167 (509)
T KOG2504|consen 123 LGLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------ 167 (509)
T ss_pred HHHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------
Confidence 999998887 3465666555 677899999988888888877753 4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
|+.+.++-..+..+|..+=|.+..++.+.+|||+.+++.+.+.+-.++.....++
T Consensus 168 R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 168 RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888888888888988888889999999999999998887776555555555554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-10 Score=119.37 Aligned_cols=173 Identities=10% Similarity=0.069 Sum_probs=124.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~ 156 (520)
.++..+..+....+.+.|+.+++|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+++.+.
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677888988889999999998874 55678999999999999996 99988877666555544333221
Q ss_pred hcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 009990 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (520)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (520)
... + .+...+.+..++..++.|...+...++..+..+++. +++.+++.+.
T Consensus 310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s 359 (491)
T PRK11010 310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA 359 (491)
T ss_pred Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence 110 0 122333334444444444444666788888888887 7788899988
Q ss_pred HHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 237 ~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
..++|..+++.+.|++.+..||+..|.+.+++.++++++....++
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999989999999999999999998888887777776665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-10 Score=116.69 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=113.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+++.........++....+|++..++|.|+.+.+|++..+++....+..+...++.++.|+++||+ |||+.+.++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~ 319 (432)
T PRK10406 241 NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLA 319 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 333333333334444677888999999999999999998888888877777788888999999996 9999887766544
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.+..+.+..... .. .+....+....+..++.+...+....+.+|.||++.
T Consensus 320 ~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------ 369 (432)
T PRK10406 320 ALFTVPILSALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------ 369 (432)
T ss_pred HHHHHHHHHHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------
Confidence 333322211100 00 111111111122223333334556788899999999
Q ss_pred hhhHHHHHHHHHH-HHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVT-VGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~-lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++++++.|...+ +++..+|.+.+++. ..| |...+++.++..+++++..++
T Consensus 370 r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 370 RALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999776544 44556888888664 445 555555555555555554444
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=108.71 Aligned_cols=167 Identities=18% Similarity=0.126 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH-H
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-I 145 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~-~ 145 (520)
..+.+|.+..+.++...+.+-..+..+.++++.+|+|+..++.+.+...++..+.+++.|.++|++ ||+-..+.+.. .
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACIL 340 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHH
Confidence 334678888888888888888888889999999999999999999999999999999999999997 98876665544 4
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++..+++++. ..-+++..+.|+..+.......+.++...|+++
T Consensus 341 tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q----- 385 (459)
T KOG4686|consen 341 TLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ----- 385 (459)
T ss_pred HHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH-----
Confidence 445666666642 223455667777777766668888899999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc---hhHHHHHHHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMG 270 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g---~~~~f~i~~i~~~ 270 (520)
.|++++..+...|+|-.+.|++.|.+.+.-| |--.|.+....+.
T Consensus 386 -LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~a 432 (459)
T KOG4686|consen 386 -LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMA 432 (459)
T ss_pred -hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999988654 4445555444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=117.01 Aligned_cols=186 Identities=13% Similarity=0.051 Sum_probs=147.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT 144 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~--~~i~~~~~ 144 (520)
+.|.+...+++.++.+-+...+......|.++++|++..+...+..+..+...++.+++|++.||+ |.| ++++++++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 335666777777777778888889999999999999999999888999999999999999999996 988 88888777
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
++.+..+.-.+ ...+..... .+.+.+++.-++.|+..|+.++..-++.+++.|+++
T Consensus 358 ~~~~i~~~g~~-G~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---- 413 (477)
T PF11700_consen 358 LWIIIPLYGLF-GFWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---- 413 (477)
T ss_pred HHHHHHHHHHH-HhhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence 66432222211 000000000 234456666678999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
.+.+|++|.+..-..+++||++.+.+.+..| .|+++....+..+++++++...
T Consensus 414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999998877 8889888777777777776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=118.64 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH--HHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL 147 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~--~~~ 147 (520)
.++.+.+..++.....+++..+++.|+.+.+|++..+++...+.+.++..++.++.|+++||..+||+....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 456666666777777778888999999999999999999999999999999999999999985344443322211 111
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++...+... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 121111110 10 223344455556666666666667788899999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHH
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f 262 (520)
++..++++...++|..++|.+.|++.+..||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998754
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-10 Score=119.33 Aligned_cols=171 Identities=7% Similarity=-0.007 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHHH-
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL- 147 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~-~GR~~~i~~~~~~~~- 147 (520)
.++...+..++..++++....+++.|+. ++|++..+++...++..++..++.+++|+++||. +++++...++..+..
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 4566666667777777788888999986 4799999999999999999999999999999984 244443433332222
Q ss_pred -HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 148 -lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
++.+++.+. .+...+++.+++.|++.+...++..+++.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 333332222 245566777888999999988999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhccc-chhHHHHHHHHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNML 275 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-g~~~~f~i~~i~~~i~~~~ 275 (520)
+++.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 899999999999999999999999998877 4999999887766555543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-10 Score=111.13 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+.+++..+..++...+-.++..|++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |++|.+.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3455555555555445557888999999854 799999999999999999999999999999996 9999988888777
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
+++.+++... .+.. ...+.++.|++.+...|...+...+.++++..
T Consensus 219 ~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~----- 264 (310)
T TIGR01272 219 VLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS----- 264 (310)
T ss_pred HHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----
Confidence 7766544432 1111 22355678999999999999999998876431
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
+++ ++. ....+|+.+.|.+.|++.|..|.+.+|++..++
T Consensus 265 ~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 265 QGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 333 343 456689999999999999988988888765544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-10 Score=118.32 Aligned_cols=187 Identities=13% Similarity=-0.014 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++.++..++..+........+..+. .++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~ 360 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYS-PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMA 360 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 3334444444444333333344444 455567899998888888888899999999999999996 99999999888877
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+++.+...... .+. ........+....++.+....+..+....+..|.+|++. |
T Consensus 361 ~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~ 417 (481)
T TIGR00879 361 ICLFVLGILGASFV-TGS----------------SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------R 417 (481)
T ss_pred HHHHHHHHHhhccc-CCc----------------ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------H
Confidence 77766653211000 000 000022222222222222222334666777899999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+...++.+...++|++++|.+.+++.++.+|++.|++.+++.+++.++.++.
T Consensus 418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 9999999999999999999999999888899999988777766666555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=110.95 Aligned_cols=178 Identities=15% Similarity=0.080 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++...+.|...+++.+|+++..|+|....++++..|.++..++.+++|+++|| +.++++.....+..+.
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA 289 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence 57778888888889999999999999999999999999999999999999999999999998 8888888887777777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+.+.+.. .+.....+..++.|+..+........-.++ ..++. ++.
T Consensus 290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~ 335 (394)
T COG2814 290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL 335 (394)
T ss_pred HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence 77766642 234455555556666666555555555555 33445 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~ 283 (520)
+.+++....|+|..+|..++|.+.+++|+....++.++..++++++.+...+..
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988888888776655443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=117.04 Aligned_cols=177 Identities=10% Similarity=-0.009 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cch-hHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGR-YWTIAIFTTIYLAG 149 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR-~~~i~~~~~~~~lg 149 (520)
-.+..+...+....+..+++.|+++.+|++...++.+..+..+.-++..|+.|+++||. ||| |+.++++.+...++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 33455666777777888899999999999999999999999999999999999999942 488 55666677777776
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++... |.. + .......+++...+..++.........++.+|+.++.++ |.+
T Consensus 91 ~~llf~~---p~~-~------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~ 143 (473)
T PRK10429 91 LFLLFSA---HLF-E------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQ 143 (473)
T ss_pred HHHHHcC---CCC-C------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHH
Confidence 6555432 100 0 012233444455566788888888899999998854332 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc-------ccchhHHHHHHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-------~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
..++-....++|+.+.+.+...+.. ..+|++...+.++..+++.++.+
T Consensus 144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8887666666665555444332211 12466555555554444443333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=113.22 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCC
Q 009990 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (520)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (520)
+++...+.+..+..++..+++++.||++|++ |||+++...+++.++++++..++-. .+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~---------------------~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG---------------------TT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC---------------------CC
Confidence 5667778888999999999999999999985 9999999999999999986655411 01
Q ss_pred cchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHH----HHHHHHHHHHhHHHhhhhcc--
Q 009990 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY----LSVTVGAIVAFTLVVYIQME-- 255 (520)
Q Consensus 182 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~----~~~~lg~~i~~~i~~~l~~~-- 255 (520)
+...-..++...|+++|+|.|+-+|+..+..+|....+. |+...++.. ++.-.|++++.++.+.....
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 111245778889999999999999999999999988887 887766643 34445555554444433211
Q ss_pred ---------cchhHHHHHHHHH
Q 009990 256 ---------HGWGSAFGALAIA 268 (520)
Q Consensus 256 ---------~g~~~~f~i~~i~ 268 (520)
.=||..|.+.++.
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHH
Confidence 1288887765544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=118.65 Aligned_cols=177 Identities=14% Similarity=0.050 Sum_probs=124.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchhH-HHHHHHHHHHHHHHHH
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYW-TIAIFTTIYLAGLTGI 153 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsD----r~~GR~~-~i~~~~~~~~lg~~~~ 153 (520)
+...+.......++..|.++.+|+++..++.+..+..+..++..|+.|.++| | +|||| .++++.+..+++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4455555556678899999999999999999999999999999999999999 6 58666 4556777777777766
Q ss_pred Hhhhccc-ccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 154 TLCATMK-VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
.... | ...+ ......+.+..++..++......+..++.+|..++.++ |.+..+
T Consensus 90 f~~~--p~~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 90 FSPP--PAGLSF-------------------TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hccc--cchhhh-------------------hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 6420 0 0000 01233445666677899999999999999999986543 788888
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcc-------cchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~-------~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
+-.....+|..+...+.+.+.+. .+|++...+.++..++..++.....++
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 87777777776555555544321 168888777776666665555554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=114.41 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=119.5
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccc
Q 009990 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (520)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (520)
+.+++++...+-+.+.++|.++++++.+++|.|.||+ .-.+.+....++..+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3467888888999999999999999999999999996 85555555444444333222222
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh--
Q 009990 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-- 253 (520)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-- 253 (520)
.+.+.+++.|++.|+..++..|+...+++..|.+++ |+.-+++++.+..+|.++|.++...+.
T Consensus 132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 467889999999999999999999999999999988 999999999999999999999998763
Q ss_pred ----cccchhHHHHHHHHHHHHHHHHHHh
Q 009990 254 ----MEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 254 ----~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
...||||.|.+.+++.++..++.++
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 2468999999988776555544444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=114.91 Aligned_cols=179 Identities=17% Similarity=0.079 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-------
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------- 139 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i------- 139 (520)
+++.++.+.+..++....++.+..++|.|+.+.+|++..+++...++..++..++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 345678888888898899999999999999999999999999999999999999999999999986 543211
Q ss_pred -HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 140 -~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 1111111111111111100 0 1122333344444555555555555555565543
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc---chhHHHHHHHHHHHHHHHHHHh
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~---g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
. ++...++.+...++|+.++|.+.+++.+.. +|..+|.+.++..+++.++...
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4 899999999999999999999999987643 3888888887777776655543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=117.55 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-----HHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~-----~i~~~~~~ 145 (520)
+|.+.+..++.....+.+..+++.|+.+++|++...++...+++.++..++.+++|+++||+ |||+ ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444445556777889999989999999999999999999999999999999996 8652 22211111
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
.+.+...+.+. . . .+....++..++.+++.+...+...++..+..+ +.
T Consensus 333 ~l~~i~~~~~~-~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLG-R-----A--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhc-c-----c--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 11111111111 0 0 123333444445555554444455555555543 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
++...++.+.+.++|+.+++.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888887777788877776654 22334699999998888777777766654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=112.72 Aligned_cols=180 Identities=11% Similarity=-0.029 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
+..+...+..++..++.-...++++.+++++.|++.++.|.+.++..+...+.+++.|.++||+ |.||-+++...+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3566666666666666656778899999999999999999999999999999999999999996 866655544433332
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
....+......|.+. .| ++++..+.++..+.......+.. |.+-++.+|. .+
T Consensus 86 l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~sr~---~~ 137 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVSRR---NG 137 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHHHH---HS
T ss_pred HHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHH---hc
Confidence 222222111111110 11 12222222233232222222221 3333222211 22
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
-=++-..+...+|.+++..++|++.+ .+-...|++..++.++..++.+.
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 23334566778999999999999876 34456788766554444444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=106.97 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~ 156 (520)
..++..+.+-...++++.|+++ .|+|..+.+.+.+...+...+.+++.|+++||+..++|.+.+..++..+........
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444456778899974 679999999999999999999999999999997557777766666555544333332
Q ss_pred hcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
.+.+.+++..++..+......|...++.-+...+
T Consensus 89 ----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 89 ----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred ----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 2344555556667777777778888877776653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=115.17 Aligned_cols=165 Identities=8% Similarity=-0.078 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~-i~~~~~~~ 146 (520)
+.++...+..++....++++..++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. +....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 346677777777888888999999999976 3577888888888999999999999999999996 87664 33333333
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.++ .... + +....+++..+.++|.....+.......+.+|++.
T Consensus 321 ~~~~~~-~~~~------~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------ 366 (412)
T TIGR02332 321 AAGWLL-ASAT------D---------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------ 366 (412)
T ss_pred HHHHHH-HHhc------C---------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------
Confidence 333221 1110 0 11111222223334433333444455567788777
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~ 268 (520)
|+.++++.+...++|..++|.+.+.+.+..| |+++|++.+++
T Consensus 367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 367 RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999999999998775 99998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-09 Score=110.68 Aligned_cols=147 Identities=16% Similarity=0.052 Sum_probs=107.5
Q ss_pred HHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009990 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (520)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~ 163 (520)
..+.+..+++.|+.+ .|.+....+.....+.++..++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~------- 316 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI------- 316 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH-------
Confidence 344567788888875 599998888888888899999999999999996 99999988887766655444322
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 009990 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (520)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (520)
+. .....+.+..+..+++..+..+..+.++.|.+|++. |++++++.+...++|+.
T Consensus 317 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 317 PQ-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred cc-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 10 111122222222233333444567788899999888 99999999999999999
Q ss_pred HHhHHHhhhhcccchhHHHHH
Q 009990 244 VAFTLVVYIQMEHGWGSAFGA 264 (520)
Q Consensus 244 i~~~i~~~l~~~~g~~~~f~i 264 (520)
++|.+.+++.+..|+....++
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 999999999998886654333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=107.00 Aligned_cols=168 Identities=11% Similarity=-0.105 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++...+..++..+..+......+.|+.+.+|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444455555566678888889999999888877777778889999999999996 99999999888877777
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++.+.... .+ .+...++++.++.++|.+...+.......+.. +++ +++.
T Consensus 296 ~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVS------KGTV 345 (406)
T ss_pred HHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-ccc------ccHH
Confidence 776653110 00 23445667777888888876666655554333 345 8999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~ 269 (520)
.+.+++...+|..+|+.+.+++.+..++....+..+++.
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG 384 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence 999999999999999999999988777655444444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=109.67 Aligned_cols=181 Identities=14% Similarity=-0.002 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..|.+.+..+...-++-++..+++.|++++++.++.+++.....+.....+..++||+||||+ |.+|++.+.....+++
T Consensus 219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALA 297 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHH
Confidence 467777777777777888999999999999999999999999999999999999999999997 8888888888777777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
..++.+... .... ..+...++...+.+++..|.-......++...|+. + .+.
T Consensus 298 ~~~l~~~~~--~~~~-------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~------~G~ 349 (417)
T COG2223 298 AALLSLFLT--GFGH-------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E------TGA 349 (417)
T ss_pred HHHHHcccc--cccc-------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h------hhH
Confidence 777665411 0000 01223333333334444444445555666666665 3 577
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
..++.....++|+..-|...+...+.+| +...|++...+.+++.++.+..
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999888999999888887 8888988877777666655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=108.55 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
++...+..++..+..++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|+++||+ ||++.+..+..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4444455555556655555 6677788777999999999999999999999999999999996 9999988887766666
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
..++... + .+...+++..++.|++.+...+...+++.|.+|++. |++
T Consensus 291 ~~~~~~~-------~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLT-------P--------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhh-------c--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 6555543 0 125566777788999999988999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
.+++++...++|..++|.++|++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987653
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-09 Score=107.09 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
+......++.....+...++++.|+.+.+|++..+.+...+.+.++..++.++.|+++||+ |+++.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3333334444444445556678888888999999999999999999999999999999996 999999888887777765
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhh-hccCCCCChhhhhhhhhH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~r~~~ 230 (520)
++.... .+.....+..++.++|.++..+...... .+..+++. ++..
T Consensus 281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 554320 1223334444455555544444333333 33333332 3333
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~-~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
..+...++|..+||.++|++.+. .+|++.+.+.++..++.+....
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 33566789999999999999885 5799888887766555444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-08 Score=104.24 Aligned_cols=179 Identities=10% Similarity=0.051 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHH-HHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTIYLA 148 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~~-i~~~~~~~~l 148 (520)
.-.+..+..++.+..+..++..|.++.+|+++..++.+..+.-+.-++.-|+.|+++||. +||||. ++++.+...+
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i 92 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI 92 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence 333455566666667778899999999999999999999999999999999999999983 687655 4456666766
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+++... |...+ ......+++.-.+..++.........++.+++.++.++ |.
T Consensus 93 ~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt 145 (460)
T PRK11462 93 VCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RI 145 (460)
T ss_pred HHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HH
Confidence 66655432 11101 12234444555566788888888999999999876443 88
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcc-------cchhHHHHHHHHHHHHHHHHHHh
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~-------~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
+..++.....++|..+++.+...+... .||+....+.+++.+++..+.+.
T Consensus 146 ~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 146 SLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 899988888888877776665433222 25666555555544444444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-09 Score=110.66 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+...+...++..+++.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++..+..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44555556666666655556677788878999999999888888888888889999999996 99999998888777776
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++.+... . .+...+.+..++.|++.+...+....+..+.+|++. ++..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 66554310 0 123333445567778888888888899999999887 8999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
+++++....+|..+|+.+++.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988665554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=106.27 Aligned_cols=166 Identities=7% Similarity=-0.101 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++......+....++.|+. +.|.+....+...+...++..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3454555555555666667777888985 5899998889888888888888889999999996 9999999998888877
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++... .+.+.+++..++.|++.+...+....+..++ ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 6665543 3456677778888998888777777777765 4444 567
Q ss_pred HHHHHH-HHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHH
Q 009990 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (520)
Q Consensus 230 ~~~~~~-~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~ 273 (520)
..+++. ....+|..+||.++|++.+..|+. .|++.+++.++++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 777765 556788899999999999988873 5555555444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=110.48 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++..+.+.+..++....++.+..+++ ++.+++|++..+++...+...++..++.+++|+++||+ |||+.+....+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 34445555555666677777777777 66778999999999999999999999999999999996 98855444433333
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
+..++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 332222211 234455666778899999889999999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhh
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l 252 (520)
++.+++++....+|..++|.++|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999876
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-09 Score=107.54 Aligned_cols=167 Identities=12% Similarity=0.073 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhc---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 75 FGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
.+..++....+.....+.+.|+.+.+ +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..++.+
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRII 299 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Confidence 33344444444445556788887665 45556667777777788888889999999996 999999998888888776
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
+.... .+...+++..++.|++..........+..+.++++. ++...
T Consensus 300 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~ 345 (396)
T TIGR00882 300 GSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIY 345 (396)
T ss_pred HHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEee
Confidence 65543 234555666777787766555555566677777666 66666
Q ss_pred HH-HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 232 NF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 232 ~~-~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
+. ++....+|..+++.++|++.+..||+..|.+.+++.++..++.
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 65 6678899999999999999998999999998877766555543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=108.26 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++.+++..++..++.+......+.|++..++ +....+....+..+...++.++.|+++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45556666666666666555555556655565 455666677777888899999999999996 9999999998888887
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh-hhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (520)
.+.+.+. + .+...+++..++.+++.+...+...++++|..+.++.+. .+.++
T Consensus 301 ~~~~~~~-------~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFA-------G--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHc-------c--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 7766543 1 134455566677889988888999999999876432110 11268
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
..++++++...+|..+++.+.+++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999998876665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=105.07 Aligned_cols=173 Identities=6% Similarity=-0.096 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+..+...++...+.....++.+.|+.+ .|++.++.+.+..... ....++.+++|++.||+ |+++.+.++..+..+..
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 333444455555555666777888875 7999999998888765 45667788999999996 99999888776653332
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CChhhhhhhhh
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~ 229 (520)
+....... ... . .....++....+.+++.+...+...+...+..++ +. +++
T Consensus 289 ~~~~~~~~-~~~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~ 340 (390)
T TIGR02718 289 LLWFAQAA-FWL-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGT 340 (390)
T ss_pred HHHHHHHH-ccc-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHH
Confidence 22221110 000 0 1122333333444555666666777777777665 55 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~ 274 (520)
.+++++...++|..++|.++|++.+..||+..|.+.+++.+++.+
T Consensus 341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988999888877766555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-09 Score=111.40 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++...+..++..+.+++...+++.|+++.+|++..+++.......++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~ 335 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF 335 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence 44445566667777788888899999999999999999999999999999999999999996 99999999988888877
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
.++.+.. .++ .+...++...++.|+|.+...+.......+.+|+++ ++.+
T Consensus 336 ~~~~~~~-----~~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~ 385 (485)
T TIGR00711 336 YWRAFTF-----TPD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG 385 (485)
T ss_pred HHHhccC-----CCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence 7665321 011 233445556778899988877777777788888777 9999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhccc
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEH 256 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~ 256 (520)
.++++...++|+.+|+.+.+.+.++.
T Consensus 386 ~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-08 Score=106.66 Aligned_cols=155 Identities=9% Similarity=-0.053 Sum_probs=108.6
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccc
Q 009990 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (520)
Q Consensus 94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 173 (520)
+++.+.+|++...+........+...++.+++|+++||+ |||+.++.+.++..++.+++..... ++
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~~-------- 360 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----TQ-------- 360 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----cC--------
Confidence 344457888877777666677778889999999999996 9999999999988888877764311 00
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhccc-cchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHh--
Q 009990 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (520)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~-- 250 (520)
........+.++.+++.+. ..++...+++|.+|++. |++++++.+...++|..+++.+.+
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111223334444444443 34677899999999888 999999988888888877755554
Q ss_pred ----hhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 251 ----~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++.+..+|++.|++.++..+++.++.+..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 44467788888888776655555544443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-08 Score=106.58 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~ 152 (520)
..+..++.....++...+++.|+ ++.+|+++..++.....+.++..++.+++|++.||+ |||+++..+.++.+++.++
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 33444555566666677888896 567899999999999999999999999999999996 9999998887776665554
Q ss_pred HHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
..+. + +. ..+.+..+.|+|.+...|+..+...+.++++. +.+.+
T Consensus 342 ~~~~-------~---------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 342 SAFA-------G---------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHc-------C---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 4332 1 11 22445678899999999999999999987643 33333
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHH
Q 009990 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML 275 (520)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~ 275 (520)
+... ..+|+.++|.+.|++.+..| -+..|.+..++.++.+..
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3332 33678888899999988887 788887766655444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-09 Score=111.24 Aligned_cols=174 Identities=16% Similarity=0.080 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWT 138 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~LsDr~~GR~~~ 138 (520)
.+.+....++..+.+|++..++|.+++ ..|++...++. ...+..++..++.++.++++||+ |||++
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~ 367 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhH
Confidence 333334445556778888888888885 67776542211 12233345556778899999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
++++.++..++.+++.+..... + .+ ..+....+...++..+..+....+.+|.+|.
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~~---~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNHL---S--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---c--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 9888877777666555431100 0 11 1111111122222233445667778999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc----------cchhHHHHHHHHHHHHHHHHH
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~----------~g~~~~f~i~~i~~~i~~~~~ 276 (520)
+. |+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 424 ~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 424 RY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999998773 344556666666555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-08 Score=102.98 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=102.5
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 168 (520)
.+.+.|+.+++|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+...... +
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~---- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P---- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C----
Confidence 34456777889999999988876544 56788899999999996 99998877777666554443322110 1
Q ss_pred ccccccccCCCCCcchhhHHHHHHHH----HHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 009990 169 CDRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i 244 (520)
.+...+++.. +..+++.+...+....++.+.+|.++ + +++....++|..+
T Consensus 301 ----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~ 354 (402)
T PRK11902 301 ----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVY 354 (402)
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHH
Confidence 1223333333 34455556666666667776666433 3 4444445677766
Q ss_pred HhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 245 ~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
++.++|++.+..||+..|.+.+++.++++++.+.
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999998888777666655543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-08 Score=101.18 Aligned_cols=160 Identities=11% Similarity=0.039 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009990 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (520)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~ 153 (520)
..+...+.....+....+.+.|+.+++|+++.+.+.+.....++..++.+++|+++||+ |||+.+..+..+..++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 211 YALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 33333444455566677778888889999999999999999999999999999999996 99999988887777776666
Q ss_pred HhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHH
Q 009990 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (520)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (520)
...... +. .....+++..++.|+|.+...+.......|.+| +. +++..++
T Consensus 290 ~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 339 (385)
T TIGR00710 290 EITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL 339 (385)
T ss_pred HHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence 543110 00 123344555667888888888888888888776 34 7888888
Q ss_pred HHHHHHHHHHHHhHHHhhhhcccchhHHHHH
Q 009990 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (520)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i 264 (520)
++.....++.+.+.+.+.+.+..+|...+..
T Consensus 340 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence 7776655444444445555555555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=110.23 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+....+..++..+.+++...+++.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 345555666667777778888899999999999999999999999999999999999999996 9999998888888777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++..... + .+....++..++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766554311 0 123344566778899999988888888888888888 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
+.++++...++|..+|+.+.+.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=102.54 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..+.+.+..++....++++..+++.|+++ .|++..+++...+.+.++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34444555556667777888899999975 79999999999999999999999999999999635666777777777777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++.+. + .+... ...++.|++.+...+...+...+..++++. ++.
T Consensus 277 ~~~~~~~-------~--------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~ 322 (355)
T TIGR00896 277 LCGLLFA-------P--------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAA 322 (355)
T ss_pred HHHHHHh-------h--------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHH
Confidence 6666543 1 11111 134577899988888877777766554321 677
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
.+++.+...++|..++|.+.|++.+..|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888999999999999988776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=103.45 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+...+++.++.+=+...+.+....|...++|++..+..++.....+..+++.+++|+|.||+ |-|+++.++++++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 455555566666666667778888999999999999999999999999999999999999995 9999999999988876
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+...+. .....+.+.-.++|+..|+.++..-++.++..|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 6665543 112334444568899999999999999999999998 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+|++|.+..-.++.+||...+.+.+.+| -|.++...++...+++++++..
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 9999999999999999999999887665 6777776666666666665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.8e-08 Score=100.11 Aligned_cols=164 Identities=10% Similarity=-0.010 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++...+..++.....++...++++++.+++|++....+.....+.++..++.++.|++.||. +|+ .+..+..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 34443444454555556666664555567899999999999999999999999999999994 544 4333333333332
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
+++.... .+...+.+..++.|++.+...+...+++.+..|+ + .++.
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence 2322210 2345556667788999988888888888887763 3 3455
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~ 270 (520)
.+++....++|..+|+.++|++.+..|++..+...++..+
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 6666677789999999999999998898887777655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=106.10 Aligned_cols=167 Identities=10% Similarity=0.035 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 009990 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (520)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~ 155 (520)
+..++..+....+...+|.+..+.+|.+...-+++.+.+.++..++.++.+++.+|+ ++++.+..+.+++.++.+.+++
T Consensus 225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhc
Confidence 333333444445566788899999999999999999999999999999999999985 9999998888888887777776
Q ss_pred hhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHH
Q 009990 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (520)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (520)
. .+.+..++..++.|++.........+.+-...|++. ||+.++++.
T Consensus 304 ~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~ 349 (524)
T PF05977_consen 304 S----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQ 349 (524)
T ss_pred c----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHH
Confidence 5 356666777788899888888888888888899888 999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 009990 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 236 ~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
+....+..+|.++.|.+.+.+|-+..+.+++++.+++.++..
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877776655555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=118.40 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
++..++..++..+..+.+..+++.|+.+.+|++.. ..+++.+...++..++.++.|+++||+ ++++.+.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 34444444444455556677889999999999998 889999999999999999999999996 9999888888877777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++.+. .+...++++.++.|++.+...+...+++.+..|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6666553 234566677788899999888889999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc-ccchhHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-~~g~~~~f~i~~i 267 (520)
+++++++..++|..+++.+++.+.. .+++...|++.++
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999888877776643 2345555554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-08 Score=103.12 Aligned_cols=183 Identities=13% Similarity=-0.020 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
.|.+.+..++..-.+.++..++|.|+++.+ +.........+..+...+..+++|+|+||+ |++|++.++.++..++.
T Consensus 254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS 330 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence 566777777776677777778999988765 333333334455677888999999999996 99999998888777766
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh--------
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-------- 222 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~-------- 222 (520)
.++.+.. |.. ...+...+.++.+.+.++.|.....+..++.+.||++..+
T Consensus 331 ~~~~l~l--p~~--------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~ 388 (462)
T PRK15034 331 ALLFLTL--PGT--------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS 388 (462)
T ss_pred HHHHHHh--ccc--------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence 5443321 100 0124555555555555666666666777777777641000
Q ss_pred -------hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 009990 223 -------YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 223 -------~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.++.-+...++......+|+.+-|.+.++..+..| +..+|++..+..++++++.+.
T Consensus 389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01135667777777888888889988777766554 888888877776666665554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-08 Score=103.30 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=107.3
Q ss_pred hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 167 (520)
...++|.|+++..+ ++...+.......++...+....+++.||.++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 45567888876665 566777776666655554454556666654576777777777777776666543
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (520)
.+...+++...+.++|.+...+...++..+..|++. |++.+++++...++|..+||.
T Consensus 295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 234445555567778888778888999999999888 999999999999999999999
Q ss_pred HHhhhhccc---c-hhHHHHHHHHHHHHHHHH
Q 009990 248 LVVYIQMEH---G-WGSAFGALAIAMGISNML 275 (520)
Q Consensus 248 i~~~l~~~~---g-~~~~f~i~~i~~~i~~~~ 275 (520)
++|++.+.. + ....|++.++..+++.+.
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999998764 2 244555444444444333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-06 Score=93.54 Aligned_cols=147 Identities=16% Similarity=0.087 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhh
Q 009990 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (520)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (520)
+...++..+..++..|+.|-++|+- |+||.+ .++..+..+...++.+.. | .+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~--------------------~~ 125 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------P--------------------GQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------c--------------------ch
Confidence 4556777788888889999999975 655544 455555555666555531 1 22
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh--------------------hhhhhhHHHHHHHHHHHHHHHHh
Q 009990 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY--------------------KTHLDRFFNFFYLSVTVGAIVAF 246 (520)
Q Consensus 187 ~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~--------------------~~~r~~~~~~~~~~~~lg~~i~~ 246 (520)
.....+..++..++.+......++++.|+.+++.... ...|++..++-+...++|+.+..
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3333333334456777778899999999998876300 00015666665566677777766
Q ss_pred HHHhhhhcc--------cchhHHHHHHHHHH-HHHHHHHHhhcc
Q 009990 247 TLVVYIQME--------HGWGSAFGALAIAM-GISNMLFFIGTP 281 (520)
Q Consensus 247 ~i~~~l~~~--------~g~~~~f~i~~i~~-~i~~~~~~~~~~ 281 (520)
.+.-.+... .+.|..+.+.++.- +.++..++..++
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~ 249 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPD 249 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 655433211 23577777666654 344444444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-08 Score=102.79 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++...+++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 355555566666666666666677788888888776665555544566778889999999996 9999999999888888
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh-hhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (520)
.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..+.++.+. ++..+
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7776643 11 234556666778899999999999999999887643211 11257
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
..++.+.+...+|..+|+.+.+.+.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788889999999999999999887654443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-08 Score=101.77 Aligned_cols=169 Identities=12% Similarity=-0.023 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhh--hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFY--VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
+...+..++..+.+.....+++.|+.. +.+.+....+.+...+.+......++.|++.||. |+|+.+.++.++..++
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~ 287 (395)
T PRK10054 209 LWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIG 287 (395)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHH
Confidence 333344455555544455566677654 3445555666777777666667778889999996 9999999898888887
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++.+.. .+...+++..++.++|.+...|...+++.+..|++. +++
T Consensus 288 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 288 LVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 77665421 234455666778889988878888889999998877 788
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~ 275 (520)
.++... ...+|..+||.++|++.+..|....|++.+++..++.++
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 877644 556899999999999999999887887655554444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-06 Score=89.23 Aligned_cols=142 Identities=14% Similarity=0.013 Sum_probs=101.3
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc------hhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 009990 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG------RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (520)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G------R~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 169 (520)
+..|++++....+..+........ ..+..|..||+. + |.+-+..+..+...+..++......-. ..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~---- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ES---- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cc----
Confidence 345788888877777776665544 578899999996 5 445566677777777666655533211 00
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
.+.-+.+.........+...++|+|.+...++..++.+|..++++ |.+..++.|...-+|.+++..+.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011222233445556677899999999999999999999999 99999999999999999999999
Q ss_pred hhhhcccc
Q 009990 250 VYIQMEHG 257 (520)
Q Consensus 250 ~~l~~~~g 257 (520)
+.+.+.++
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98877765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-08 Score=115.25 Aligned_cols=184 Identities=5% Similarity=-0.181 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++..+..+++..+++.|+++.+|.+...++.+.+.+.++..++.++.|+++|++ ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455566666666666777888999999999999999999999999999999999999999986 6666666555555554
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+.+.+..... ..+....+. -.+=. ...+.+.++++.+++|++.+...+...+++.+.+|++. +++
T Consensus 305 ~~~l~~~~~~~-~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSSV-PAEPAQLKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccccc-ccccccccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 44333320000 000000000 00000 00133456677788899999988899999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc-ccchhHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-~~g~~~~f~i~~i~ 268 (520)
.++.+++..++|..+++.+++.+.+ ..++...|++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999998874 34566665554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=97.14 Aligned_cols=166 Identities=10% Similarity=-0.038 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh---HHHHH-HHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~---~~i~~-~~~ 144 (520)
+.++.+.+..++....+|++..|+|.|+++ .|++.. ++....+...... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 356778888888899999999999999964 678765 4444444444333 3458888885 543 33222 232
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++...+... .+....++...+.+++.....+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222221 112223344455667777777778899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHH
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~ 276 (520)
|+++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987763 66666776666655555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=8e-08 Score=103.60 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 009990 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (520)
Q Consensus 113 ~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (520)
...+...++.+++++++||+ |||+.+.++.++..++.+++.+. ++ ......++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~-------~~-------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV-------PV-------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc-------CC-------------------CchHHHHH
Confidence 34456677888999999996 99999999988887777666553 11 11123333
Q ss_pred HHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHH
Q 009990 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (520)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~ 272 (520)
..++.+++.++..+....+.+|.+|++. |++++++.+....+|+.++|.+.+ +. ..++...+.+.+++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHH
Confidence 3445556666667788899999999988 999999999999999999999988 43 355666777766665555
Q ss_pred HHHHHh
Q 009990 273 NMLFFI 278 (520)
Q Consensus 273 ~~~~~~ 278 (520)
.++.++
T Consensus 488 ~~~~~~ 493 (505)
T TIGR00898 488 GILTLF 493 (505)
T ss_pred HHHHHc
Confidence 544443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=104.31 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G--R~~~i~~~~~~~ 146 (520)
+.++.+.+...+..++++.-...++.|.. ..+++..+++.++++..+...++.++.|+++|+. . ++....+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 46778888888888888888888898988 8999999999999999999999999999999985 5 333444444444
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+.+++. .+...+.+.-+++|++.|......+..+.|..+.++
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 4444444433 345667777788999999988888889999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhhc
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
...++++......++..+||.+.|++.+..| |...|+.++++.+++.+.++...
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999887 99999999988888776665543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=99.76 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC-hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
.+....++..+.++....+++.|+.+.+|++ ..+.+.......+...++.++.|+++||+ |+++...+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444445555566678888999999999999 78899999999999999999999999996 988888888777777766
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
.+.+.... .+....++..++.|++.+...+...++..|.+|++. +++..
T Consensus 289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 66554210 134555667778999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHh
Q 009990 232 NFFYLSVTVGAIVAF 246 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~ 246 (520)
++++...++|..+||
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=99.19 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+..+++..++..++........+.|.+..++.+ ...+.+..+..+...++.++.++++||+ |||+++..+.++..++
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALG 303 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHH
Confidence 4666777777777777767777788888888887 4556677778888899999999999996 9999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh-hhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (520)
.+++.+... .+.+.+++..++.|++.+...+...++.+|..+.++-++ +...+
T Consensus 304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g 357 (428)
T PF13347_consen 304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG 357 (428)
T ss_pred HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence 888877511 256778888889999999999999999999998654221 11256
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
..++.+.+...++..+++.+.+.+.+..|
T Consensus 358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 358 MYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 77788888999999999999888765444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-07 Score=96.57 Aligned_cols=193 Identities=13% Similarity=0.061 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
..++...+.+...++..+.-.-........+-+.-|++...+..+.........+.++++.++.||+ |||+.++++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 3344566666666666666444444456666678899999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhcc-ccchhhhhhhhccCCCCChhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
..+..+++.....+.....+ +-....+++.++..++.+ +.-|...-+.+|+||++.
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~-------------------~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~---- 401 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNSFGS-------------------WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA---- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc----
Confidence 99888887776432110000 001122334444433333 234677778899999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccc
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~ 285 (520)
|..++++-.....+..++-...-..+.+..|- +.|.+..+..++..+..+...|+.|.
T Consensus 402 --R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 402 --RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 99998887766666666555555566666663 45555555555555555555555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-07 Score=95.01 Aligned_cols=160 Identities=6% Similarity=-0.063 Sum_probs=115.6
Q ss_pred HHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009990 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (520)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~ 162 (520)
.........++.|+++.+|.+..+.+.....+.++..++.++.+++.||. ++++.+..+..+ .+..+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------ 290 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------ 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence 33344555667788888999999999999999999999999999999985 888888777533 2322222221
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 009990 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (520)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (520)
.+.....+..++.|++.+...+...+...+..| ++. ++++.++..++..++|.
T Consensus 291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~-~~~----~~g~~~a~~~~~~~~~~ 343 (393)
T PRK11195 291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGH-VLV----GAGHSIAVQNFNENLAM 343 (393)
T ss_pred ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc-ccc----cchhHHHHHhHHHHHHH
Confidence 234445566678888888877878888877543 331 16889999999999999
Q ss_pred HHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 243 ~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.++..+.+.+ +.+|-++.+.+.+++.++++.+.+.
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999888866 5677777777766665555544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-07 Score=90.66 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..|.+.+-.-+.++.+|.+..|+|.++. +.|+|.++++..++...+......+.+-++++|.-.+|+.......++.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3555666667778999999999999997 779999999999999999999999999999998778999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+.+.+. |. +...+. .+++|+|.|+..+....++.+-.++.+ + -++
T Consensus 288 ~~G~~~~-------P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAA 333 (395)
T ss_pred HHHHHHh-------hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHH
Confidence 9988765 21 222222 478999999999999999998766533 2 344
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~ 269 (520)
..++..-...+-+.+||.+.|++.|..| |...+...+.+.
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 4445444455667889999999999875 877665544443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-06 Score=88.78 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIY 146 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~-~i~~~~~~~ 146 (520)
-+.-.+..+..++.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. +||+| -++++.+-+
T Consensus 14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 14 KIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 34445556666777777888999999999999999999999999999999999999999985 68655 555666777
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.+..+++..+ |+ .+. +......++.-.+.+++...+.....++.+++.++.++
T Consensus 94 ~i~~~l~F~~-------p~--~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E----- 146 (467)
T COG2211 94 AIVAVLLFIT-------PD--FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE----- 146 (467)
T ss_pred HHHHHHHHcC-------CC--ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----
Confidence 7777766654 21 000 12344455566788899999999999999998876543
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhc-------ccchhHHHHHHHHHHHHHHHHHH
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~-------~~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
|.+..++-....++|..+...+.+.+.. ..||+..-.+.+++..+.++.++
T Consensus 147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~ 204 (467)
T COG2211 147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF 204 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888898888778876666555544432 23566554444444444444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=98.52 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-------hhHHHH-
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTIA- 140 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G-------R~~~i~- 140 (520)
+.+|.+.+..++...+++.+..++|.|+.+.+|++..+.+...++-.+...+..+++|.++||... +||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999999999998722 112111
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 009990 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (520)
Q Consensus 141 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (520)
++...-.++++.+.+. + |++ .......+.++..+.|+..++...+. .|. .++.
T Consensus 338 i~~~~~ai~l~~l~~~-------~----~~~-----------~~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~-apq~ 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT-------S----DEH-----------RLLAVILLTIAIGLSGFNISGFYKNH----QDI-APQH 390 (466)
T ss_pred HHHHHHHHHHHeeeec-------C----CCc-----------chHHHHHHHHHHHHcccchhhhHhhh----hhc-cchH
Confidence 1111111222222221 1 100 00111222222222333333322221 111 3333
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc---cchhHHHHHHHHHHHHHHHHHHhh
Q 009990 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~---~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
-+..+++.+...++.+.++|.+.+.+..+ ..|++.|.+.++..+++.+.+.+.
T Consensus 391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 68888999999999999999999998842 369999999998888888666553
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-06 Score=87.79 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=113.2
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccccc
Q 009990 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (520)
Q Consensus 95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
.+-++.|++..+.+.+.....+...+...+.|.++||+ |||+..++.++++.+..+..-.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------- 118 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------- 118 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-------------------
Confidence 34468999999999999988888889999999999996 9999999999999887764332
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhHHHhhhh
Q 009990 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ 253 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~i~~~i~~~l~ 253 (520)
.+...++++|++-|++.+....+..+........++-++ ...+..|+... +...+-++++..++-++.
T Consensus 119 ----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~ 187 (354)
T PF05631_consen 119 ----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLA 187 (354)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 357899999999999999988888887755443322110 11334444322 223344455555555666
Q ss_pred cccch--hHHHHHHHHHHHHHHHHHHhhccccccc
Q 009990 254 MEHGW--GSAFGALAIAMGISNMLFFIGTPLYRHR 286 (520)
Q Consensus 254 ~~~g~--~~~f~i~~i~~~i~~~~~~~~~~~~~~~ 286 (520)
+..+. ..+|..+.++.+++.++....+++....
T Consensus 188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 65554 6788888887777777666555554333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-07 Score=91.24 Aligned_cols=146 Identities=10% Similarity=-0.103 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~ 152 (520)
...+..++.....+....+.+.++.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++..+..+..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~ 276 (377)
T PRK11102 198 GYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIW 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 333344444445555566667788888999999999999999999999999999999996 9999999888765543333
Q ss_pred HHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHH
Q 009990 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (520)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (520)
+...... + .+...+.++..+.+.+.+...++......|..| +. +++..+
T Consensus 277 ~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 325 (377)
T PRK11102 277 LVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASS 325 (377)
T ss_pred HHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHH
Confidence 3222100 0 123333344444444445555555666677666 45 677777
Q ss_pred HHHHH-HHHHHHHHhHHHh
Q 009990 233 FFYLS-VTVGAIVAFTLVV 250 (520)
Q Consensus 233 ~~~~~-~~lg~~i~~~i~~ 250 (520)
+++.. ..+|+.+++.+++
T Consensus 326 ~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 326 LAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 75443 4466666666544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=95.26 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
.++.+.+..++..++++...++++.|+++ +|++..+.+.+..+.. +...++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35555556666778888888999999987 9999999888777655 56788999999999996 999999888888777
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+..++.+..... .+. . .. ..+...++.+.++.+++.+...+...++..+.+|++. |+
T Consensus 288 ~~~~~~~~~~~~--~~~------------~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNG--HHD------------G-IT--FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcC--ccc------------c-cc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 666544321100 000 0 00 0123455666778899999999999999999999999 99
Q ss_pred hHHHHHHHHHH
Q 009990 229 RFFNFFYLSVT 239 (520)
Q Consensus 229 ~~~~~~~~~~~ 239 (520)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999777654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=91.10 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=103.4
Q ss_pred HHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 009990 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (520)
Q Consensus 82 ~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~ 161 (520)
...++....+++.|++ ++|++..+.+.......++..++.++++++.||+ |+|+.+....++..++.+.+.+.....
T Consensus 216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (401)
T PRK11043 216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS- 292 (401)
T ss_pred HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3444555667777775 5899999988877777788888999999999996 999877666665555544333221100
Q ss_pred cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 009990 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (520)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg 241 (520)
+ .+...++++..+.+++.+...+...+...+..| +. ++++.++++.....+
T Consensus 293 --~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~ 343 (401)
T PRK11043 293 --H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGL 343 (401)
T ss_pred --c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHH
Confidence 0 123344455567788888888888777777775 35 788999988887888
Q ss_pred HHHHhHHHhhhhcccchhHH
Q 009990 242 AIVAFTLVVYIQMEHGWGSA 261 (520)
Q Consensus 242 ~~i~~~i~~~l~~~~g~~~~ 261 (520)
+.+++.+.+.+.+.......
T Consensus 344 ~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 344 CFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHccCCChhHHH
Confidence 88888888888765444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=92.80 Aligned_cols=145 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCC-----------------ChHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHK-----------------SFADSSNAVNNFLGISQASSVLGGFLAD 130 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~-----------------s~~~a~~~~~~~~~~~~~~~~~~G~LsD 130 (520)
..+.+..+.+.+++.+||+.-......+.. .+. +...--.=+.+..+.-..+.++.+++.|
T Consensus 327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive 406 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE 406 (528)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence 455666677888888988654322222111 111 1111112233445667788999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhh
Q 009990 131 AYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS 210 (520)
Q Consensus 131 r~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~ 210 (520)
|+ |||+++..+.+++.+..+++..+-. ++ ....+++++|+++..+ ..+...
T Consensus 407 rl-GRKkTMal~l~~f~iflfll~~c~~-----rn-------------------~~tvllf~arafisg~----fqvaYv 457 (528)
T KOG0253|consen 407 RL-GRKKTMALSLILFGIFLFLLTTCKT-----RN-------------------AYTVLLFTARAFISGA----FQVAYV 457 (528)
T ss_pred Hh-cchhHHHHHHHHHHHHHHHHHHhcC-----cc-------------------hhHHHHHHHHHHHhch----heEEEE
Confidence 95 9999999999999988887775411 10 2234555666665544 456667
Q ss_pred hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
+..|.+|... |+.+.+......-+|+++.|.++
T Consensus 458 YtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 458 YTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 8889999998 99999998888999999999998
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-06 Score=89.54 Aligned_cols=164 Identities=14% Similarity=0.038 Sum_probs=118.7
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~--~G--R~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~ 165 (520)
.....|+++++|+++.+.....+...+-.. ..++.|.++|.+ +| ||+-++++.++..++.+.+++... .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~--- 82 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S--- 82 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c---
Confidence 334568899999999988776665555444 456789999986 44 555666677766665555554311 0
Q ss_pred CCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 009990 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (520)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~ 245 (520)
..+.....+..++..+|......+..++..|....+... ++...++.+....+|++++
T Consensus 83 ------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~ 140 (433)
T PF03092_consen 83 ------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVG 140 (433)
T ss_pred ------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Confidence 023344455667788999999999999999988655532 7888899999999999999
Q ss_pred hHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 246 ~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
..+.|.+.+..++++.|.+.+++..+.++..+...++
T Consensus 141 ~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 141 SLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 9999999998899999988877766665555444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=91.03 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=58.3
Q ss_pred hhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~ 156 (520)
......+.|+.+++|++..+.+.......++..++.++.|++.||+ |||+.+.++..+..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557788889999999988888888899999999999999996 99999999998888887776664
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-07 Score=94.96 Aligned_cols=165 Identities=12% Similarity=-0.008 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
|.++.+++..++..+..+......+.|++..++ +....+.+.....+...++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456666666777777666555555544444444 444555566666677888889999999996 999999988887776
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh-hhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL 227 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r 227 (520)
+.+.+.+.... +. .+...+++..++.+++.+...+...++++|..+.++-+. ++..
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 66655432110 11 234555666677889999888999999999977432110 0113
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
+..+++..+..-+|..+++.+.|++.+..||
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5577888888999999999999988765444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-07 Score=96.59 Aligned_cols=190 Identities=13% Similarity=0.047 Sum_probs=140.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hHHH
Q 009990 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI 139 (520)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR-~~~i 139 (520)
...+.+||.+++..+..++..+.++.+....-.|+++ +.+-+.+..|+++++..++..++.++.|+.+-|. |+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3456689999999999999988887777777788875 4777888899999999999999999999999996 64 7778
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC
Q 009990 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (520)
Q Consensus 140 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (520)
+.+.++.++|.++....... |+ ....++.++|++.|+|.|.. ...-++++|-...+
T Consensus 106 i~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE 161 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc
Confidence 88889999999988333221 21 24678889999999997764 67889999987777
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhh----hcc--------c-chhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QME--------H-GWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l----~~~--------~-g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
+ |.++++....+..+|..+||.+...+ .+. + -|..+-|+.++..++.+++..+..++
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 7 88888886666666666666555333 211 1 14455566666666666655554444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-07 Score=93.35 Aligned_cols=162 Identities=9% Similarity=-0.047 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhh-cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+...+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++|+.+.++.++..+..
T Consensus 235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ 313 (410)
T TIGR00885 235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 3344445554444456778889998653 255555566677777788899999999999996 99998888887777766
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
++..+. + +. ......++.|++.+.+.|.+.+...+..+++. .. +
T Consensus 314 ll~~~~-------~---------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~-~ 357 (410)
T TIGR00885 314 LGSIFA-------G---------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KY-G 357 (410)
T ss_pred HHHHHc-------C---------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hh-h
Confidence 666553 1 11 22455667888888889999999999998655 22 2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhccc------chhHHHHHHHHHHHH
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGI 271 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~------g~~~~f~i~~i~~~i 271 (520)
.+...++ .+|+.+.|.+.|++.|.. +.+..|.++.+|.+.
T Consensus 358 s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 358 AAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 2222223 399999999999999954 477888877766443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-08 Score=94.88 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.+.+.++..+...+++ ---..+..+.+.+.++..++..++.++|..-..+.+.++|||.||.+|-|.--++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 4444444445444443 455667888888888888889999999999999999999999999999887777777777788
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.++++.-.. .+..++...+|++.|+|.-......+.+...+|..++ .+.
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 888776421 1457889999999999998888999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
.|++.-....+|+..-..+.+++.+..+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999888888998888888888877654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-06 Score=91.69 Aligned_cols=159 Identities=12% Similarity=0.041 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
++.+++..++...+...... +..|. +..++ +....+.+.....+...++.+++++++||+ |||+.+.++.++..++
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 33344444444344432233 34444 33333 333344455556677778888999999996 9999998887766654
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh-hhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (520)
.+.+.+. +. .+...+++..++.|++.+...+...++++|..+.++.+. ++..+
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g 361 (444)
T PRK09669 308 SALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG 361 (444)
T ss_pred HHHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence 4333322 11 345566777778999999999999999999987433211 11135
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
..++.+.++..+|..+|+.++|++.+..||
T Consensus 362 ~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 362 LVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 577888889999999999999988765555
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.51 E-value=8e-07 Score=91.19 Aligned_cols=139 Identities=11% Similarity=0.003 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++.+.+..++.....+++..+++.|+++.+|++..+++.....+.+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444445555556667788899999999999999999888889999999999999999996 99988887777666665
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
.++.+... + ..+...+++..++.+++.|...+...++.++.+| ++ ++..
T Consensus 306 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV 354 (366)
T ss_pred HHHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence 55554310 0 0134444455555666666666777788888886 34 7888
Q ss_pred HHHHHHHHHHH
Q 009990 231 FNFFYLSVTVG 241 (520)
Q Consensus 231 ~~~~~~~~~lg 241 (520)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877766554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=83.33 Aligned_cols=139 Identities=12% Similarity=-0.069 Sum_probs=95.9
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 009990 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (520)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 168 (520)
....+.|+++.+|++..+.+........+..++.++.+++.||+ ||+... +.....++.+.+...... ..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~----~~--- 296 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF----GV--- 296 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh----cc---
Confidence 44556788888999999888888777788888888889999986 743322 222222222222211000 00
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHH
Q 009990 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (520)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i 248 (520)
.+...++++.++.++|.+...+...+...|.+| +. ++...++.+...++|..+++.+
T Consensus 297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHH
Confidence 133455666778888888888999998888886 34 6888888888889999999999
Q ss_pred HhhhhcccchhH
Q 009990 249 VVYIQMEHGWGS 260 (520)
Q Consensus 249 ~~~l~~~~g~~~ 260 (520)
++++.....+..
T Consensus 354 ~~~~~~~~~~~~ 365 (394)
T PRK11652 354 SAMLPQTGQFSL 365 (394)
T ss_pred HHHccCCchHHH
Confidence 998876544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=83.42 Aligned_cols=179 Identities=8% Similarity=0.004 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
++..++..++...+.-....+...|+++.-+.+....+...++..+.-.+.-.+.+++..|+ |-++++.++.+.+++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444445555555555677788898865557777777777777777777778889999995 99999999999988876
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhH
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (520)
.+++.... |. ........++..+.|+..+........++.+..|++. |.++
T Consensus 288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~ 338 (400)
T PF03825_consen 288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA 338 (400)
T ss_pred HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence 66665411 00 0111222334456899999999999999999999999 9999
Q ss_pred HHHHHHH-HHHHHHHHhHHHhhhhcccchh------HHHHHHHHHHHHHHHHHHhh
Q 009990 231 FNFFYLS-VTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 231 ~~~~~~~-~~lg~~i~~~i~~~l~~~~g~~------~~f~i~~i~~~i~~~~~~~~ 279 (520)
.+++... ..+|..+|..++|++.+.+|-+ ..+.+.++..++..+++++.
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9997764 6699999999999999876633 34445555555555555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.5e-06 Score=88.84 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHH----HHHHHHHHHHHHHHHHhHHH----HHhhhccchhHH--H
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWT--I 139 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~~~~G----~LsDr~~GR~~~--i 139 (520)
.+..+++...+..+.+....+.++.|..+..+.+... .+++.+...+...+..++.. ++.||..+.+.. +
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3444555555555666667777888887765543211 44555555454455544433 455542233333 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC
Q 009990 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (520)
Q Consensus 140 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (520)
.+|.++..++.+.+.+..... . .+...+.+++++..++.++|.....|...++..+..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~---~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFA---D----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---C----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 678888888777766531100 0 000146778888999999999999999999999999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
. |++.++++..+..+|..+++.+.....+..+|...|...++..++..+++++..+
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999988887766667887777766666555555555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-05 Score=82.00 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=114.5
Q ss_pred hHHHHHHHhhhhcCCChHHH-HHHHHHH----HHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009990 88 LSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a-~~~~~~~----~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~ 162 (520)
...+...+....++.+.... ....... .+...+.+++-|.++||+ |||..+.+..+...+..+.+.+.
T Consensus 40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------ 112 (463)
T KOG2816|consen 40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------ 112 (463)
T ss_pred chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence 33555666665555543322 2333333 466778888999999996 99999999999888887776663
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHH--HhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 009990 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG--FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (520)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g--~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l 240 (520)
. +++++ +.+ -+.+.......++++|....+. |...+++.+.+...
T Consensus 113 -----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 113 -----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA 159 (463)
T ss_pred -----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence 1 22222 222 2334466788889999999887 99999999999999
Q ss_pred HHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 009990 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 241 g~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~ 283 (520)
+..++|..++++....|....|.++++..+++.+-.....++-
T Consensus 160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es 202 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES 202 (463)
T ss_pred HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999998888777777666555543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.2e-05 Score=77.16 Aligned_cols=109 Identities=16% Similarity=0.015 Sum_probs=75.0
Q ss_pred hHHHHHHHhhhhcCC---ChH----HHHHHHHHHHHHHHHHHhHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHhhhcc
Q 009990 88 LSVNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATM 159 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~---s~~----~a~~~~~~~~~~~~~~~~~~G~LsDr~~G-R~~~i~~~~~~~~lg~~~~~~~~~~ 159 (520)
+....|.|+++..+. +.. ..+...++..+..++..|+-|-++|.. | ||+.+.+...+.++..+.+++.
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i--- 109 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI--- 109 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh---
Confidence 345568888877655 333 334455666677778888889999975 7 5556666666666677766664
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh
Q 009990 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (520)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (520)
++ ..++...++...+..++..+......+++.|..++++.+
T Consensus 110 ----~~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~ 150 (438)
T COG2270 110 ----PP------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG 150 (438)
T ss_pred ----CC------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence 11 023455555566777888888899999999999987733
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-05 Score=75.36 Aligned_cols=182 Identities=11% Similarity=0.080 Sum_probs=111.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
||-.+......+.+.. +.|... .....+++.+|+|.++.+.+-..-.++.+++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs-~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFS-AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchh-hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 3444444444443332 233333 3467889999999999999999988888875 7889999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.+|+.++.++..... + ....+.+.+..++.+.+.+......-....+.||+ +
T Consensus 77 ~~GY~~~~l~~~~~i--~-------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI--P-------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc--C-------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999988743110 0 02344444444455555444444444444578874 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
||...++.-....+++.+-..+...+...-.-...+.++....+++++...+.+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 888888866655666555444444443332223333333333444444444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-05 Score=80.69 Aligned_cols=178 Identities=8% Similarity=0.065 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
.+|.+.+........++..-...+.|.+..+. .++...+...+.-.+.-.+.-.+..++-+|+ |.|+.++++.++.
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence 45555554455445555555567888876544 2334456666777777777888889999995 9999999999988
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
++=.++++++ .+.+.+.+...+-++-.+.......-++++.+|++-
T Consensus 300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------ 345 (412)
T PF01306_consen 300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------ 345 (412)
T ss_dssp HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence 8877777765 457788888899999999999999999999999877
Q ss_pred hhhHHHH-HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 227 r~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
..+.+.+ +..+..+|..+.+.++|++.|+.|++..|++.+.++++..++..+..++
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 6677776 4668889999999999999999999999988777666555555544443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=84.90 Aligned_cols=157 Identities=14% Similarity=0.037 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+...++..++...++....+.+..|.+..+|.+...+.........+..++.++..+|.+|+ |||+++.++.++.+++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 44455566666666666667777788888999998888888888888888899999999995 99999999999999999
Q ss_pred HHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh-hhhhh
Q 009990 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK-THLDR 229 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~-~~r~~ 229 (520)
+++.+.. . .+..++++...+.++|.+...+...++++|..+-++-++- +.-|.
T Consensus 317 ~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi 370 (467)
T COG2211 317 LLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI 370 (467)
T ss_pred HHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence 9998862 1 4677888888899999999999999999998875442211 11234
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
.++.+.+..=+|.+++..+.|++..
T Consensus 371 ~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 371 VYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-05 Score=81.43 Aligned_cols=159 Identities=9% Similarity=0.020 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
..++...++..+...........|.+..++.. ...+.+...+.+...++.+++++++||+ |||+.+..+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 33444444444544333344444444444433 3344566677788888999999999996 998887755554444333
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh-hhhhH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT-HLDRF 230 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~-~r~~~ 230 (520)
++.+. +. .+...+++..++.|++.+...+...++.+|..+.++-+.-+ .-+..
T Consensus 309 ~~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 309 AMFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 33222 11 22223344455667777777777788888887743211100 12334
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcccch
Q 009990 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (520)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g~ 258 (520)
++.+.+...+|..+++.++|++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666677888888888888877554343
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-06 Score=89.58 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~ 150 (520)
+.++.+..+...+.. +......+-+.+.|+++..+.+++.+.+-++..+...+..+..-|. -|-+.+-+++++..+|.
T Consensus 99 l~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHH
Confidence 334444555555554 7777778888999999999999999999999999999999999986 78889999999999999
Q ss_pred HHHHhhhcccccCCC-------------CC------Cc--ccccc----ccCCCC--Ccchh-hHHHHHHHHHHHHHhcc
Q 009990 151 TGITLCATMKVFMPN-------------QD------NC--DRISQ----LLGSCE--PAKSW-QMLYLYTVLYITGFGAA 202 (520)
Q Consensus 151 ~~~~~~~~~~~~~~~-------------~~------~~--~~~~~----~~~~~~--~~~~~-~~~~l~~~~~l~g~g~g 202 (520)
+++++- .+..+ .. .| +...+ .++.|. ..+.. -+.+++++.++.|+|..
T Consensus 177 ll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 177 LLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 988762 11111 00 01 10001 111121 12222 34477788899999999
Q ss_pred ccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc------------------cc-hhHHHH
Q 009990 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------HG-WGSAFG 263 (520)
Q Consensus 203 ~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~------------------~g-~~~~f~ 263 (520)
.+.+...+++=|-...+. -...+++.+....+|+++|.++++++... .| |+.+|.
T Consensus 253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 999999999998888777 77888999999999999999999876421 24 999999
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 009990 264 ALAIAMGISNMLFFIGTPLYR 284 (520)
Q Consensus 264 i~~i~~~i~~~~~~~~~~~~~ 284 (520)
+++.+.++..+.+++..+...
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCc
Confidence 999888777777766665443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-05 Score=79.56 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=127.3
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 009990 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~ 141 (520)
+.-.+||-.++.+.+..+.+.+. +.-.+....|..+.++ +...+.+...+|+.......+.+-|+.|++ |-|.+.++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~q-WI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQ-WIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcch-heeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHH
Confidence 45556665444444444443332 2333445667777788 666677888889999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCh
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (520)
+.++.++|..+=.++.. +.+.+. ....+..++..+.+...-.....-.-+.+-+|++++
T Consensus 115 gt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q- 173 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ- 173 (480)
T ss_pred HHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-
Confidence 99999999888666532 211111 111355667777776666655555556677899988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc------chhHH--HHHHHHHHHHHHHHHHhhcccccccCC
Q 009990 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSA--FGALAIAMGISNMLFFIGTPLYRHRLP 288 (520)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~------g~~~~--f~i~~i~~~i~~~~~~~~~~~~~~~~~ 288 (520)
|..+..+-.++..+|..++.++...+..+. .|... |+...+...+.+++..+.+++..+.||
T Consensus 174 -----ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp 243 (480)
T KOG2563|consen 174 -----RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP 243 (480)
T ss_pred -----hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999888877777777777777776665432 35442 333333333344444454444434444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-05 Score=77.80 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=136.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhc
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~ 158 (520)
++..++++.=-..+-+|--+.||++..+...+...+..+..++-.+.|++..|-.+++++..+++.+..++..++.++..
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345554444557778889999999999999999999999999999999986679999999999999988888777643
Q ss_pred ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH
Q 009990 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (520)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~ 238 (520)
. .+.+.+..+.+++|+|.|.......+...|+..+++ .+.+++.+....
T Consensus 298 ~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQ 346 (403)
T PF03209_consen 298 L-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQ 346 (403)
T ss_pred c-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHH
Confidence 1 246788899999999999999888999999998877 788999999999
Q ss_pred HHHHHHHhHHHhhhhcc----------cchhHHHHHHHHHHHHHHHHHH
Q 009990 239 TVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLFF 277 (520)
Q Consensus 239 ~lg~~i~~~i~~~l~~~----------~g~~~~f~i~~i~~~i~~~~~~ 277 (520)
.+...+|..++|.+.|. .+|..+|.+-++.+++++.+..
T Consensus 347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877542 3577778877777766665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=86.82 Aligned_cols=181 Identities=14% Similarity=0.009 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYLA 148 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~G--R~~~i~~~~~~~~l 148 (520)
++.+.+.....++.....-..++.++.+.+.-+.-+.++...-..+...++..+.|.|+||+ + |......++++..+
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~ 350 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV 350 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 33333333344444444566778888888886565788777778888999999999999997 8 53333333332222
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
......++ .++..+++-+...+++.+...+...+....+.+.+...+-...+
T Consensus 351 ~~~~iP~~----------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYG 402 (464)
T KOG3764|consen 351 SSGPIPFA----------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYG 402 (464)
T ss_pred HhchhHhh----------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceee
Confidence 22222221 34556666666777777777677666666666655533111378
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
+.+++...+..+|..+||.++|.+.+..|++|.-.+.++..++...++...+
T Consensus 403 sVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 403 SVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred eHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999987777776665555554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-05 Score=72.95 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=103.4
Q ss_pred hhhcCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccccc
Q 009990 97 FYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (520)
Q Consensus 97 ~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
...++.+. ...+...+.+.....++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------- 91 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------------- 91 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------------
Confidence 33445444 4678888889999999989999999997 9998888888765555444444310
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHhHHHhhh
Q 009990 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYI 252 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~i~~~i~~~l 252 (520)
.....+++.+++.|++.+...+...+++.|.++. +. |+...+.... ...+|..+++.+++.+
T Consensus 92 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 92 ----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred ----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1367778888889999999999999999999987 33 7888888777 5778888888777666
Q ss_pred hcc--cchhHHHHHHHHHH
Q 009990 253 QME--HGWGSAFGALAIAM 269 (520)
Q Consensus 253 ~~~--~g~~~~f~i~~i~~ 269 (520)
... .+|++.|.+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 156 LGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 543 46888665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=79.84 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc---------
Q 009990 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (520)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~--------- 255 (520)
.+...++++.+++|.|.+...+..++++++..++++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999999887 88899999999999999999999977632
Q ss_pred -------cchhHHHHHHHHHHHHHHHHH
Q 009990 256 -------HGWGSAFGALAIAMGISNMLF 276 (520)
Q Consensus 256 -------~g~~~~f~i~~i~~~i~~~~~ 276 (520)
..|+++|++.++..++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886555544433333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.8e-05 Score=77.47 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
..-.+..|+..-+-..+.++++.|+.+..|.+..+++..++.+..+.+++..++-++-.|+ ...|.+.+..++..+-.+
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3334444444444445678899999988999999999999999999999999999999986 877777766655444444
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
...+. .+ ..-+.+.+++|+..+.+.|.+.+...+..+++.+ .++.
T Consensus 318 ~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~- 362 (422)
T COG0738 318 AVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG- 362 (422)
T ss_pred HHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce-
Confidence 44443 12 2334456789999999999999999999995442 2222
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccchhHHHH
Q 009990 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~ 263 (520)
.-....+|+++-|.+.|++.|..|-...+.
T Consensus 363 --~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 363 --LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred --eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 222345899999999999999988766655
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=85.81 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~~i~~~~~~~ 146 (520)
.+|...+..++.....|++..+++.|+++..|+|..++++....+.++..++.++.|+++||. +.+|..+..++.++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 588888999999999999999999999987789999999999999999999999999999993 36666666555555
Q ss_pred HH-HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 147 ~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
.+ |.+.+... ........+.+....+.+...++......+....+.
T Consensus 354 ~~~g~~~l~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAA----------------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhh----------------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 43 32333322 011122222222333333444455555555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHH-hHHHhhhhcccchhHHHHH
Q 009990 226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGA 264 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~-~~i~~~l~~~~g~~~~f~i 264 (520)
++-+..+.+..+.+.+++++ ++..+.....++|.+.|.+
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 14444455445555444444 4444555556788888843
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=76.77 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.++...+..++....+++....+|.|+++.+|++..+.++......++..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666666677777789999999999999999887777777777777777765443 4444444444444455
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+++.+.... .+ .+...++++.++.++|.+...++.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 01 12333456777788888887777775332 222221 566
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
..++++.....+..+++...+++... +-.++|....++
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 77777777777788888888888654 445566554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-05 Score=82.06 Aligned_cols=178 Identities=8% Similarity=0.045 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChH----HHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-------HHHHHHHHH
Q 009990 78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIY 146 (520)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~----~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~-------~i~~~~~~~ 146 (520)
..+....+......++.|.++..+.+.. ....+.+...+...+..++.|++.||+ |||+ -+.+++++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 4444455555556677787653333210 223344444455656677789999996 9887 377788877
Q ss_pred HHHHHHHHhhhc-ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 147 ~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
.++.+.++.... ...... ..+.+.++...++.|+|.+...+...+++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 777665432211 000000 0234556677788999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhc----------ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~----------~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++...+.++...++|..+|..++.+... ...+.+.|...++..+++.++++...+
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998887765521 112455666555554444444444333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=78.89 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=109.8
Q ss_pred HHHHHHHhhHHHHHHHhhh--hcCCCh------HHHHHHHHHHHHHHHHHHhHH----HHHhhhccchhHHHHHHHHHHH
Q 009990 80 AERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
+....+|.+...++.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.++.++..
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~ 361 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence 4445566666666666542 111111 113344444444444555555 5556663 66688889999999
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+.+.+...... .| ...+..+++...++.++|.+...|...+++.+..|++. |
T Consensus 362 l~f~~l~~~~~~~~----------------~~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------r 416 (500)
T PRK09584 362 GAFLVLPLGAKFAN----------------DA---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------M 416 (500)
T ss_pred HHHHHHHHHHHhcC----------------CC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------H
Confidence 99888776522100 00 01234567788899999999999999999999999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhc----------ccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~----------~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++.++.++++..+|+.++..+.+.... ..++.+.|...++..++..++++...+
T Consensus 417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888887777666643221 123667777666555444444444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.3e-07 Score=97.65 Aligned_cols=199 Identities=17% Similarity=0.144 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009990 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~ 152 (520)
.+.+..+.+ +..++.......-+.+.|+++.++++++.+.+-++..+..++..++.+|. -|-|.+-++.++..+|.++
T Consensus 7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence 344445555 66667666677788999999999999999999999999999999999984 7888999999999999998
Q ss_pred HHhhhcccccCCC-----------------CCCcc--cccc---ccCCC----CCcchhhHHHHHHHHHHHHHhccccch
Q 009990 153 ITLCATMKVFMPN-----------------QDNCD--RISQ---LLGSC----EPAKSWQMLYLYTVLYITGFGAAGIRP 206 (520)
Q Consensus 153 ~~~~~~~~~~~~~-----------------~~~~~--~~~~---~~~~~----~~~~~~~~~~l~~~~~l~g~g~g~~~~ 206 (520)
+++- ++..+ .+.|. ...+ +.+.| +........+++++.++.|+|....++
T Consensus 85 ~~lP----hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 85 FALP----HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred Hhcc----HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 8762 22111 00120 0000 00111 112223356788899999999999999
Q ss_pred hhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc---------------------cc-hhHHHHH
Q 009990 207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGA 264 (520)
Q Consensus 207 ~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~---------------------~g-~~~~f~i 264 (520)
...+++=|-.+++. -...+++++....+|+++|.++++.+... .| |+.+|.+
T Consensus 161 LG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli 234 (539)
T PF03137_consen 161 LGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI 234 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence 99999999988887 67788889999999999998888765321 24 8899988
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 009990 265 LAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 265 ~~i~~~i~~~~~~~~~~~~ 283 (520)
.+++.++..+.++...++.
T Consensus 235 ~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 235 CGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHcCCccC
Confidence 8877766665555554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00065 Score=72.50 Aligned_cols=208 Identities=15% Similarity=-0.022 Sum_probs=138.9
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChH------H----HHHHHHHHHHHHHHHHhHHHHHhh
Q 009990 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------D----SSNAVNNFLGISQASSVLGGFLAD 130 (520)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----a~~~~~~~~~~~~~~~~~~G~LsD 130 (520)
+..+..++.++.++..+++.-++++.+..+...|+.+ .++-++. + ..+....+.+...+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999998888888875 4543321 1 223344445555566677778888
Q ss_pred hccc-hhHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhh
Q 009990 131 AYLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 208 (520)
Q Consensus 131 r~~G-R~~~i~~~~~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~ 208 (520)
++ | ||++..++.++..++++...+....+. ..+. | . ....- +|........++...++|+..+.....-
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~-~-~-----~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siP 401 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY-D-G-----DGESL-PPPTGIKASALIVFAILGIPLAITYSIP 401 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-c-c-----ccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence 85 8 467778888888888777765422100 0000 0 0 00000 0111123455566678899999988899
Q ss_pred hhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc--hhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
.+++++..+++..+ .|..+++++.++.+...+..+..|.+.+..| -.+.+.+.++.++++.+..++..++
T Consensus 402 fal~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 402 FALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988854422 6899999999999999888887777555443 4567788888888877777665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=80.90 Aligned_cols=137 Identities=9% Similarity=-0.156 Sum_probs=104.2
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccc
Q 009990 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (520)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (520)
.++.+|+++...+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+..........
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---------- 347 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---------- 347 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC----------
Confidence 3457999999999999999999999999999999985 99999999999888877554321100000000
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 009990 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (520)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (520)
. .+...+....++.+++.+........++.+..|++. .++.++++....++|..+++.+++++.+.
T Consensus 348 -----i---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 348 -----I---SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred -----C---CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011223334456777777777788999999999988 89999999999999999999999999877
Q ss_pred cc
Q 009990 256 HG 257 (520)
Q Consensus 256 ~g 257 (520)
.|
T Consensus 414 ~g 415 (468)
T TIGR00788 414 IG 415 (468)
T ss_pred cC
Confidence 66
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-07 Score=100.24 Aligned_cols=185 Identities=15% Similarity=0.072 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||++++++.++.++.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444433444445566666777666 2222333355566777888999996 9999999998887777
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhcc-ccchhhhhhhhccCCCCChhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
.+.+..... ..++ .+...+...+ +...+..++.+ +..+....+.+|.||.+. |.
T Consensus 330 ~~~~~~~~~---~~~~---------------~~~~~~~~~i-~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~ 384 (451)
T PF00083_consen 330 SLILGIIFF---LGVS---------------SSSWWSILSI-VFLALFFAFFSLGWGPLPWIYTAELFPTKV------RS 384 (451)
T ss_pred ccccccccc---cccc---------------cccccccccc-eeeeeccccccccccccccccccccccccc------cc
Confidence 666641000 0010 0000111111 11112222222 344666688899999999 99
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
++.++.+....+++.+++.+..++.+..+-...|.+.+++.++..+..++..++
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 999998888889999998888888776662344555555555555544444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.2e-05 Score=77.78 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=119.8
Q ss_pred hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 009990 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 167 (520)
+.+++--++ ++.+..++..+.....-..+-.+.-++.++|..++ |+-+++.++++..++=.+.++..
T Consensus 390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L----------- 456 (618)
T KOG3762|consen 390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL----------- 456 (618)
T ss_pred HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh-----------
Confidence 444443344 35555555555444445566667778889999996 99999999999888877776664
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHh
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAF 246 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~i~~ 246 (520)
.|.|+.+..-++.|+..+.++.++.+++++..|++- +.++.++... .-.+|-.+|.
T Consensus 457 -----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~Gs 513 (618)
T KOG3762|consen 457 -----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGS 513 (618)
T ss_pred -----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhh
Confidence 567788888899999999999999999999999998 7777777544 3457888888
Q ss_pred HHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 247 ~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
+|+|.+...+|-+..|.+++++.++.++++....+
T Consensus 514 lIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 514 LIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred hhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89998888888888888888777777766665543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00082 Score=72.85 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+..++.....++...+..++.+....+....+-+..|.+... .....+..+...++..++.++-||+ |||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334555665555556665554433333344444566665433 4444455566677778889999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
...++.++++..........+ + ........+....+.......+..+....+.+|.||.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999999888876332110000 0 000112222222222333333334555678899999988
Q ss_pred hhhhhHHHHHHH
Q 009990 225 THLDRFFNFFYL 236 (520)
Q Consensus 225 ~~r~~~~~~~~~ 236 (520)
|+.+.++-..
T Consensus 429 --r~~~~s~~~~ 438 (513)
T KOG0254|consen 429 --RSKGASLAVA 438 (513)
T ss_pred --HhhhHHHHHH
Confidence 8887777433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=73.79 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccc--hhHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~LsDr~~G--R~~~i~~~~~~~ 146 (520)
.++...+..++....++++..++|.|+++.+|++..+++.+.....+ +..++.+++|+++||+ + .|+.+.+++++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 57778888888999999999999999999999999999988887665 5688999999999996 6 556777777766
Q ss_pred HHHHHH
Q 009990 147 LAGLTG 152 (520)
Q Consensus 147 ~lg~~~ 152 (520)
+++.++
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=54.64 Aligned_cols=65 Identities=18% Similarity=0.017 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 009990 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (520)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~ 145 (520)
++...+...+..+++.|++ +.|++..+.+.+.++..+...+++++.|+++||+ ||++.++....+
T Consensus 10 f~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 3333444456778888887 5999999999999999999999999999999996 888877665543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=56.87 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcc
Q 009990 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (520)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
+.......++......+..++...+.+++ |.|++++++.+.+.+-......
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~---------------------------- 86 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY---------------------------- 86 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh----------------------------
Confidence 33333455556666677777888888885 9999999999888865544332
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhh
Q 009990 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (520)
Q Consensus 184 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~ 251 (520)
.+...++.+-++.|+|.+..++....++.+..+++. +++-.+++....+.+.++|.++.-.
T Consensus 87 -~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 87 -PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred -hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888889999999999999999998777665 7777777766666666666655533
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00021 Score=73.86 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHH--------HHHHHH-HHHHHHHhHHHHHhhhccchhHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFL-GISQASSVLGGFLADAYLGRYWTI 139 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~--------~~~~~~-~~~~~~~~~~G~LsDr~~GR~~~i 139 (520)
+.++...+.-|+.-+++|+...+...-+ +..++.+.+... ...+.. ..+..+..++..++|++ ||++..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 5566677777777888887766544444 345554432221 112222 22333666778889986 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCC
Q 009990 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (520)
Q Consensus 140 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (520)
+.+.+++.+..+.++..-.. . .++.....++. +..-++.-++.+.....-+|.||.+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~-----~----------------~~~~Gf~v~y~--l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ-----L----------------ENTIGFVVLYS--LTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc-----c----------------cccCceeehHH--HHHHHHhcCCCceeEEeehhhchHH
Confidence 99999988887777653110 0 01111111121 1223444455556666678999999
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc-----ccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-----~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
. |+.+.++...+.-+|++++.....++.+ ..|.++.|++.+.+++++.+..++..
T Consensus 439 v------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 439 V------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred H------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 9 9999999999999999999999999988 77899999999999988887766643
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=71.08 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-CC-ChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchhH--------
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HK-SFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~-s~~~-a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~-------- 137 (520)
..+|+++...+|..-+-..+..| .-++-+.+ |. .+.+ ..+.++++.+++++|.+.+|.++. +.-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchh
Confidence 35778877777765554434444 44666677 76 3332 233789999999999999999983 323333
Q ss_pred -HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccC
Q 009990 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (520)
Q Consensus 138 -~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (520)
.+.+..+ ..++.+++++.. | ...++++-++.|++.|...+...+..+|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~~------p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLTL------P----------------------KAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHHC------C----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2333343 556666666541 1 147888999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHH-hHHHhhhhcc-------------cchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~-~~i~~~l~~~-------------~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
. ++ -++-+++...+..+|+.+- -.+.|.+.|. ..++..|.+.++..++++++-....
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 9 78 7888888888888887764 4455666542 1388889888777766666655444
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00045 Score=71.46 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHH-HH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIF-TT 144 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~~i~~~-~~ 144 (520)
+.++.+..+.+...+++..=.+++++|+. .+|.+..-.+.+-....+...+.+++.|..|||. |||||.++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56777777777777877666777888886 7899888888888888888899999999999985 7877766544 44
Q ss_pred HHHHHHHHHHhhhccc-ccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhh
Q 009990 145 IYLAGLTGITLCATMK-VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (520)
+..++.+++..+.-+. .+.++.+. +........++++..+.=+..-..+...-++.+|+..+++.++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~------------~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~ 178 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERK------------PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT 178 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCccc------------ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence 4445555554442211 11111111 1233556777788888888888888999999999998877321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 009990 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (520)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (520)
| +.+++...+.+|..+|...++|.
T Consensus 179 ---~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 179 ---R--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ---c--cchhHHHHHHhcceeeeeccccc
Confidence 2 77888888888888887777654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.02 Score=60.98 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC-----hHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchhHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~~~~G~LsDr~~GR~~~i~~ 141 (520)
++.++...+.-++-.+.++.+.. +++.+..+ .+....+-....+.+.+. .++.+++++|+ +|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 34566666666666666654332 34555452 234444444444444444 77889999996 99999888
Q ss_pred HHHHHHHHHHHHHhhhccc--ccCCCCCCccccccccCCCC-----Ccc----------hhhHHHHHHHHHHHHHhcccc
Q 009990 142 FTTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCE-----PAK----------SWQMLYLYTVLYITGFGAAGI 204 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~l~~~~~l~g~g~g~~ 204 (520)
....+.+...++++..... .++|+ +.|+ .+. .+....+++. ..+-....
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-----------~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~v 145 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPT-----------ALADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVV 145 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCc-----------HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHH
Confidence 7777776666655542210 01111 1121 010 1111122222 22222333
Q ss_pred ch-hhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh
Q 009990 205 RP-CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (520)
Q Consensus 205 ~~-~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~ 253 (520)
.. ...++..|.+..++ -.++++++..+.|+|..+++.+..++.
T Consensus 146 vS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 146 LSLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 77899999999888 788999999999999999999998876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0052 Score=62.41 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
.++.++....+.....|....+...++ .+.+|+++.+.+-+++.-.+++.+.++.-++..||+.|.-+..+.-..+.++
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 555666555555555555555556666 5679999999998888888888888888888999876554444433333333
Q ss_pred -HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 149 -GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 149 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
..+++... .....++++..+..+..+...++...++....|.++ |
T Consensus 341 P~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------r 386 (451)
T KOG2615|consen 341 PAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------R 386 (451)
T ss_pred HHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------c
Confidence 33333322 234677888888999989999999999999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
|...+++.....++-++||.++|.+..
T Consensus 387 G~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 387 GTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 999999999999999999999987754
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0083 Score=65.48 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-H
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-A 140 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i-~ 140 (520)
.+++|.+...++..++..+.+|.+....|......++-+.. ..+.....+..+..++.++.|++.-++ ||.|.. +
T Consensus 306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li 384 (599)
T PF06609_consen 306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI 384 (599)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence 34456777778888888888988888888888777766553 455666677777888888889999875 776655 4
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 009990 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (520)
Q Consensus 141 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (520)
++.++..++.-+++.. .++ |....+...++.|+|.|+..........-..|++.
T Consensus 385 ~~~~~~ta~~Gama~~------~~~--------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ 438 (599)
T PF06609_consen 385 FGSVLMTAFCGAMAAV------RPD--------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED 438 (599)
T ss_pred HHHHHHHHHHHHHHHc------cCC--------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence 5555555544444432 121 22233444567788888866555555544555555
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhh
Q 009990 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (520)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~ 253 (520)
.+.+.++......+|+.+|..+..-+.
T Consensus 439 ------ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 439 ------IGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888988888888888888877765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.13 Score=57.28 Aligned_cols=255 Identities=11% Similarity=-0.021 Sum_probs=163.9
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccc
Q 009990 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (520)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 172 (520)
..+..--.+...........++....++..+.....+|-..|+...+....+.++++.+...+.+..+ . +
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~-~-------- 77 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-I-P-------- 77 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-C-c--------
Confidence 33333334444556677888999999999999999999887788888888888888878777654311 0 1
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhh
Q 009990 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (520)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (520)
.........+..+.+.++.++..++-+.+.+++.+..++ ..+.+..++|++..+.+.+. .+++..+
T Consensus 78 ----------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i 143 (654)
T TIGR00926 78 ----------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTII 143 (654)
T ss_pred ----------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 012234455677778899999999999999999987552 34457999999999887775 4566555
Q ss_pred hcccc-hhH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCC
Q 009990 253 QMEHG-WGS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPG 324 (520)
Q Consensus 253 ~~~~g-~~~------~f~-i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~ 324 (520)
..... +.. +|. ..++++++.++.++.....++..++.+.+...+.++.....+..+. ++
T Consensus 144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------~~------- 210 (654)
T TIGR00926 144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------RF------- 210 (654)
T ss_pred HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------hh-------
Confidence 54332 221 233 4556666677777776666665566555444445544333221110 00
Q ss_pred CcccccCCcccccCCchhHhHHHHhhhccccCCCCCCcc--ccchhHHHHHHHHhhchhhhHHHHHHHHHhhhhhHHHHH
Q 009990 325 KHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ 402 (520)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~--~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~ 402 (520)
... +.. ....|-. .....+++++...+++.++...+.+++.+.|.......+
T Consensus 211 -----------~~~------~~~---------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~ 264 (654)
T TIGR00926 211 -----------STR------SEH---------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW 264 (654)
T ss_pred -----------ccC------Ccc---------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 000 000 0011111 122334567889999999999999999999988888888
Q ss_pred HHhhcccc
Q 009990 403 AYTMNTHM 410 (520)
Q Consensus 403 ~~~~~~~~ 410 (520)
...+++..
T Consensus 265 ~~qa~~m~ 272 (654)
T TIGR00926 265 TLQATRMD 272 (654)
T ss_pred HHHHHHhc
Confidence 88877653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.033 Score=57.91 Aligned_cols=157 Identities=9% Similarity=-0.006 Sum_probs=107.3
Q ss_pred hHHHHHHHhhhh-cCCChHHHH-HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009990 88 LSVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (520)
Q Consensus 88 ~~~~l~~yl~~~-~~~s~~~a~-~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~ 165 (520)
.-+++..|+++. .|++..+.. -+.=.+.-......++...++|. +|-|++++++.+..++...++.+.
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 456788999987 999988876 34444445555666777899996 599999998888888777776664
Q ss_pred CCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 009990 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (520)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~ 245 (520)
.++..+-+.-++.|++.+. ..+..+++=...++++ ..+..++...+.-+|-.+|
T Consensus 92 -------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 92 -------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred -------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3566777778888887666 3455555555555554 4555666666666666666
Q ss_pred hHHHhhhhc--ccchhHHHHHHHHHHHHHHHHHHhhc
Q 009990 246 FTLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT 280 (520)
Q Consensus 246 ~~i~~~l~~--~~g~~~~f~i~~i~~~i~~~~~~~~~ 280 (520)
..++-.+.. ..++....++......+++++.++..
T Consensus 146 ~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 146 SLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666654443 34577777777777777776655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.25 Score=52.17 Aligned_cols=196 Identities=9% Similarity=-0.113 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..+.+....++.+..--......+.|+.+.+.-+-.-.+..-..-.+...++.+..|.+.||. -|.+++..+.++.-+.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 345556666666666655556677788776655554444444444556666777778899996 9999888887665543
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
..+-+.........+. . ..+ .......++.+..++..+..-....+.-+.=-|+...=..++...+.+
T Consensus 82 v~~s~~~~~~l~~~~~----~-------~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS----S-------SSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHHhCCc----c-------ccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 3332221110000000 0 000 000112222222222222222222333333344432111111111333
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
.-+...=.=.+--++||++.|.+....+...+..+.++..++++++=++
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445678889999999988788887777777766666665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.089 Score=53.61 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=96.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhh-----hccchhHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsD-----r~~GR~~~ 138 (520)
.++..+.++++++..+.+..-. |....+|..+ +.-|.|-++.+..-.++. =+...++.+++-| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL-~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLL-QAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHh-cCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4445556777777777776665 6777555444 466776665543322221 1223567888888 74 99997
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
-++-+- +.+|.+++.++...+.... +....++...+....+++-+..+..-.++-+..-.+..+
T Consensus 101 Wvvp~q-~llG~~mllLs~~v~~~~g---------------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPCQ-YLLGLFMLLLSYLVDRGLG---------------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeehH-HHHHHHHHHHhhCCCcccc---------------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 765442 4566666666533221111 011113333344445566777777777777777778877
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (520)
++ .+-+-+...++.+.|.++|..+.
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 77 67777777778888888876654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.041 Score=59.13 Aligned_cols=159 Identities=10% Similarity=-0.083 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-----CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh-H---
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-----HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-W--- 137 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-----~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~-~--- 137 (520)
|-..+..+++...+-...+....+.+..|..+.. |+. ..+++..++..+...+..++.+++=.|. +|| |
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s 343 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVR 343 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCC
Confidence 3334444444444444555555566666766543 322 1244555665555556666667775553 322 1
Q ss_pred ---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhc
Q 009990 138 ---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGAD 214 (520)
Q Consensus 138 ---~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad 214 (520)
=+.+++++..++.+.+.+...... ++ ...+..++++..++.++|.-...|...+++++
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~~~--~~-----------------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~ 404 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARWSA--MY-----------------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITR 404 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-----------------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 267888888888888776532110 00 01345667777888999999999999999999
Q ss_pred cCCCCChhhhhhhhhHHHHHHHH-HHHHHHHHhHHHhhh
Q 009990 215 QFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (520)
Q Consensus 215 ~~~~~~~~~~~~r~~~~~~~~~~-~~lg~~i~~~i~~~l 252 (520)
..|++- ++..++.++.. ..+|..++..+.+..
T Consensus 405 laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 405 IEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred hChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 99999998774 357777666666554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.067 Score=58.01 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=85.1
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHHHH-HHHHHHhhhcccccCCCCC
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA-GLTGITLCATMKVFMPNQD 167 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~-i~~~~~~~~l-g~~~~~~~~~~~~~~~~~~ 167 (520)
....-.+...+|-+....+.+++++.++..+|..++|++.++. -|+.. +-+...+... ...++...... ..
T Consensus 35 v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~----~~-- 107 (521)
T PRK03612 35 LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAF----QG-- 107 (521)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--
Confidence 3344455556788888899999999999999999998887543 22221 1111111111 11111111000 00
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhH
Q 009990 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (520)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (520)
.....++...++.++..|+..|....+..+... ++ .++..+-.|....+|+++|.+
T Consensus 108 -----------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l 163 (521)
T PRK03612 108 -----------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGL 163 (521)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHH
Confidence 011122233345566666666665555543222 12 345567778888899999999
Q ss_pred HHhhhhc-ccch-hHHHHHHHHHHHHHHHHHHh
Q 009990 248 LVVYIQM-EHGW-GSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 248 i~~~l~~-~~g~-~~~f~i~~i~~~i~~~~~~~ 278 (520)
+.+++.- ..|- +..+.++.+..+++++.++.
T Consensus 164 ~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 164 AFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8887643 5663 44444444444444444333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0086 Score=63.73 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=105.7
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcc
Q 009990 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (520)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 170 (520)
.+..|+...++++..+.+...+.......++.++...+--+.+|-++++..|++.-.+..+..++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 446788889999999999999999999999998888555555699999999999999998888886
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 009990 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (520)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (520)
++.++.+...++.+ ..+...+...++.+-+.++++ +++.+++......+.++++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 34566666654444 446678999999999999988 999999999999999999988887
Q ss_pred hhhc
Q 009990 251 YIQM 254 (520)
Q Consensus 251 ~l~~ 254 (520)
.+..
T Consensus 388 ~i~~ 391 (463)
T KOG2816|consen 388 NIFA 391 (463)
T ss_pred HHHH
Confidence 6643
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.007 Score=62.78 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~-~i~~~~~~~~lg 149 (520)
+.++.....+....+|+..+.+-.-+ ..-|++...+|.+.....+..+++.++.|.+.||. ..+| ++++......++
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVG 345 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence 44444444444455555555443233 35677778889999999999999999999999996 5444 444444444445
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
...+..... .+ .....++....++|++..+..|...-+..|..=+..+ +.
T Consensus 346 ~~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~t 395 (480)
T KOG2563|consen 346 TLMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GT 395 (480)
T ss_pred HHHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------cc
Confidence 322221111 01 1223445555677877778888888888776444442 33
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcccc---hhHH-HHHHHHHHHHHHHHHHhhcccccc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSA-FGALAIAMGISNMLFFIGTPLYRH 285 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g---~~~~-f~i~~i~~~i~~~~~~~~~~~~~~ 285 (520)
..|+.+...++-+.+=.++.+...+..+ |.++ -+.......+.+++..+.++.|+.
T Consensus 396 SsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 396 SSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred cceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 3444444444545555555566655554 3332 223333344455555555555543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.11 Score=56.45 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
....+.+..+...+.+|+..-+ ...+|.+......+... .........+.+-|+. |||.....+.++..++
T Consensus 323 ~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 323 RTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3444444444444444443332 33455544433333332 3444445558899996 9999999999999998
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (520)
.+....... . .+.....+...+..++.+........+.+|++|+.. |..
T Consensus 394 ~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~ 442 (521)
T KOG0255|consen 394 LLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNT 442 (521)
T ss_pred HHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHH
Confidence 888877521 0 110112222223334444445566888899999988 999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
+.+.......+|++++|.+......
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988755543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00059 Score=74.11 Aligned_cols=188 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhc-cchhHHHH
Q 009990 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIA 140 (520)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~LsDr~-~GR~~~i~ 140 (520)
...+++ .+....+...++.+...|+.+++|-|+..+|++++.+++.+..+..+ +..++.++||++..|+ ++.|+.+.
T Consensus 300 ~Ll~Np-~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 300 RLLTNP-VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 333444 57778888888999999999999999999999999999988877655 6788999999999997 44566666
Q ss_pred HHHHHHHHHHHHHHhhhcc-cc------cC-CC------------CCCcccccc------ccCCCCCcchhhHHHHHHHH
Q 009990 141 IFTTIYLAGLTGITLCATM-KV------FM-PN------------QDNCDRISQ------LLGSCEPAKSWQMLYLYTVL 194 (520)
Q Consensus 141 ~~~~~~~lg~~~~~~~~~~-~~------~~-~~------------~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~ 194 (520)
+..+..++..+.......+ .. +. +. ...|+.... ....|+.+=......+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 5555555544441111110 00 00 00 001110000 01113222112344444444
Q ss_pred HHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHhHHHhhhhcccc
Q 009990 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~i~~~i~~~l~~~~g 257 (520)
++..+..+..........-..+++++ |..+.++..+ ...+|.+-||++-|++.|..-
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 44444444444444455557788888 8999898554 456788999999999988643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.3 Score=51.74 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHH
Q 009990 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (520)
..+......+..++++.+-|.. |.|+.+.++...+....+.+.. .|-..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 5556667778888999999985 9999999999988877766655 245678
Q ss_pred HHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHH
Q 009990 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (520)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i 248 (520)
+.+-++.|+|.+..+.-...+..+-..++. +++..++.......+..+|..+
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHh
Confidence 888899999999999989888888877766 5555555444444444444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0037 Score=60.43 Aligned_cols=174 Identities=16% Similarity=0.072 Sum_probs=97.8
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 009990 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (520)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 169 (520)
.....|+-+.+++...+.+.+.-......++...+.|-|+|+. |||+..+..++. +++..++- +
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycit----YiLsCiTK------h----- 120 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCIT----YILSCITK------H----- 120 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHH----HHHHHHhh------c-----
Confidence 3345577788899888888777777777777778889999995 999976555544 44444331 1
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhh-hccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhH
Q 009990 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG-ADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFT 247 (520)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-ad~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~i~~~ 247 (520)
.++.-.+.++|++-|+..+.......+.. +|.-..++ =+++=...-|+- ..+...+-++++..
T Consensus 121 --------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGl 185 (454)
T KOG4332|consen 121 --------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGL 185 (454)
T ss_pred --------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 13456778999999998887766665543 33221111 011101111221 11222333444444
Q ss_pred HHhhhhccc--chhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhh
Q 009990 248 LVVYIQMEH--GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294 (520)
Q Consensus 248 i~~~l~~~~--g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 294 (520)
.+-.+.+.. |--.+|-.++....++..+.+..+.+...++.+.+.+.
T Consensus 186 fgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdll 234 (454)
T KOG4332|consen 186 FGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLL 234 (454)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHH
Confidence 444555544 34456666555555665555554444334433344343
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.049 Score=43.48 Aligned_cols=64 Identities=8% Similarity=-0.070 Sum_probs=57.3
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~ 156 (520)
+.+.+.++.++|.++++++.+...+++.++.+...++.++. .+++.+..+.++.++..+.+++.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577889999999999999999999999999999999984 88889999999888888888875
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=61.79 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=69.6
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhc-cchhHHH
Q 009990 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAY-LGRYWTI 139 (520)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~LsDr~-~GR~~~i 139 (520)
++..+++ .+....+...++.+.+.|..+++|-|+.++++.+...++.+..... -+..++.++||++.-|+ +.-|...
T Consensus 386 ~~ll~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a 464 (735)
T KOG3626|consen 386 KRLLSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAA 464 (735)
T ss_pred HHHhcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHH
Confidence 3344444 5778888999999999999999999999999999999998886655 45778889999999987 4556665
Q ss_pred HHHHHHHHHHHHH
Q 009990 140 AIFTTIYLAGLTG 152 (520)
Q Consensus 140 ~~~~~~~~lg~~~ 152 (520)
.+.++..++..+.
T Consensus 465 ~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 465 KFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.03 Score=59.42 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=119.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHH--HHHHHhHHHHHhhhccc---hhHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGI--SQASSVLGGFLADAYLG---RYWTIAI 141 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~--~~~~~~~~G~LsDr~~G---R~~~i~~ 141 (520)
.|+..+.++...+...+.+..+.+..+......++++.+++....++.... .....+...+..-|. | +|+.++.
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~~ 338 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIILL 338 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeeee
Confidence 355677777777787888777677777787888899887765544443322 222233333444442 3 3444444
Q ss_pred HHHHHHHHHHHHHhhhcccccCC-CCCCc----ccccc-ccCCCCCcchhhHHHHHHHH-HHHHHhccccchhhhhhhhc
Q 009990 142 FTTIYLAGLTGITLCATMKVFMP-NQDNC----DRISQ-LLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGAD 214 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~-~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~ad 214 (520)
+..+......+... ...+.+ +.+.+ .+.++ ++.-|+.....+...++++. ++.|++.-.+.....++.++
T Consensus 339 g~l~~f~~~~i~~y---p~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTY---PWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred hHHHHHHhhheeee---eccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 43322222222111 111111 00111 11111 22237766666666666654 45667666667788899999
Q ss_pred cCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 215 QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 215 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
+..+++ .+...+++.....++..+||+....+....|.++.+.+.++..++...++...
T Consensus 416 iLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 416 ILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred HhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 66677777778888889999988888888888877766665554444444433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.40 E-value=4.1 Score=42.50 Aligned_cols=130 Identities=9% Similarity=0.037 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHH
Q 009990 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (520)
.++.+-.+-..+..++.-+..+|+ .-..=+.+..++.++|+++.+++ .+..
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~ 113 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVW 113 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchh
Confidence 345555556666677777888875 42222344445666777777664 3456
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc--hhHHHHHHH
Q 009990 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALA 266 (520)
Q Consensus 189 ~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--~~~~f~i~~ 266 (520)
+-+++.++.+++.|.......++.+ .+++.. .+.|..+...++++|...-..+.. .| -|..+.+..
T Consensus 114 ~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~~----------l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~ 181 (402)
T PF02487_consen 114 VRLLGVVLASLSSGLGEVTFLSLTH-FYGKSS----------LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIML 181 (402)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHH-hcCccc----------cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHH
Confidence 6678888888888887777777644 455322 333444555566666555444444 44 455555555
Q ss_pred HHHHHHHHHHHhh
Q 009990 267 IAMGISNMLFFIG 279 (520)
Q Consensus 267 i~~~i~~~~~~~~ 279 (520)
..-++.++.+++.
T Consensus 182 ~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 182 VLPAIFLLSYFFL 194 (402)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.35 Score=51.24 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=94.3
Q ss_pred hHHHHHHHhhhhcCCC----hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh-------HHHHHHHHHHHHHHHHHHhh
Q 009990 88 LSVNMVTFMFYVMHKS----FADSSNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLC 156 (520)
Q Consensus 88 ~~~~l~~yl~~~~~~s----~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~-------~~i~~~~~~~~lg~~~~~~~ 156 (520)
..+.+..|..+..+-+ ....++..+.-.+...+..++..++--+. +|+ .-+.+++++..++.+++...
T Consensus 303 ~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~ 381 (498)
T COG3104 303 MGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLA 381 (498)
T ss_pred ccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3445566665432222 11223444444444555566666666553 333 23456666666666665554
Q ss_pred hcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 009990 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (520)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (520)
..... +++...+.++++.+.+++++|.=+..|...+++....|+.- .+..++.+..
T Consensus 382 ~~~~~------------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfL 437 (498)
T COG3104 382 GIWFG------------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFL 437 (498)
T ss_pred HHhhc------------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHH
Confidence 11100 01122457788888899999999999999999999999877 7888888888
Q ss_pred HHHHHHHHHhHHHhh------hhcccchhHHHHHHHHHHH
Q 009990 237 SVTVGAIVAFTLVVY------IQMEHGWGSAFGALAIAMG 270 (520)
Q Consensus 237 ~~~lg~~i~~~i~~~------l~~~~g~~~~f~i~~i~~~ 270 (520)
+...|..++..+.+. ..+.......|+..++..+
T Consensus 438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i 477 (498)
T COG3104 438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAI 477 (498)
T ss_pred HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHH
Confidence 888887777666652 1122234455665554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.76 Score=48.52 Aligned_cols=148 Identities=9% Similarity=-0.102 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 009990 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (520)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~ 155 (520)
++..+-.++.-+....+..|+... |++....+..-+...+....++++..++-+|+ |..|+=+++.....+...+...
T Consensus 265 ~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~ 342 (432)
T PF06963_consen 265 FALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVV 342 (432)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHH
Confidence 333333444445667788899877 99999999999999999999999999999997 9999888888877665555444
Q ss_pred hhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHH
Q 009990 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (520)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (520)
+...+. .| .+..+...++.+..+-=+|.=+.--+..-++-|..|+++ |+...+.-+
T Consensus 343 ~~~~~~-~~-----------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~ 398 (432)
T PF06963_consen 343 SFWAPG-SP-----------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQN 398 (432)
T ss_pred HHhcCC-CC-----------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHH
Confidence 322110 00 012345566666666667777778888888899999888 999999988
Q ss_pred HHHHHHHHHHhHHH
Q 009990 236 LSVTVGAIVAFTLV 249 (520)
Q Consensus 236 ~~~~lg~~i~~~i~ 249 (520)
...++.-.+...++
T Consensus 399 sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 399 SLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 87888777765554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.6 Score=46.31 Aligned_cols=117 Identities=20% Similarity=0.133 Sum_probs=75.2
Q ss_pred HHHHHHHhHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCCccccccccCCCCCcchhhHHHHHH
Q 009990 116 GISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (520)
Q Consensus 116 ~~~~~~~~~~G~LsDr~--~GR~~~i~~~~~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (520)
.+..++.++.+.+++|. +||++++.++.++..++.++.-+....-+ +.|. ..-+....++.....+
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t-----------~~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT-----------DSPPLLFTPSYYLALI 358 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC-----------cccccccccchhHHHH
Confidence 44555666777787665 69999999999999988888776521100 1111 0011111223334444
Q ss_pred HHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHh
Q 009990 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (520)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (520)
.-+++|++-+........++++.+| ++ |..+++++-.-..+++.++.....
T Consensus 359 i~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 359 IGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4568899999999999999999994 45 677888876666666655544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=54.11 Aligned_cols=136 Identities=9% Similarity=-0.035 Sum_probs=75.7
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCcccccc
Q 009990 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (520)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~---~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (520)
+..|.+..+......++..+..++.++||.++|++ +-|-.+..+..+...++........... +. .+.
T Consensus 276 ~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~~---- 346 (493)
T KOG1330|consen 276 ELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FTS---- 346 (493)
T ss_pred HHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hhh----
Confidence 34455555666777888899999999999999983 1221233333333333222211110000 00 000
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhc-cccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHhHHHhhh
Q 009990 175 LLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI 252 (520)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~i~~~i~~~l 252 (520)
.+. .+.+.++++|... -..++....+..+..|++. |..++++.+... .+|..-+|.+.|.+
T Consensus 347 ----------~s~-~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 347 ----------SSM-IFGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred ----------HHH-HHHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehhH
Confidence 111 2222233333222 2345566677788899988 999999976654 45566566588888
Q ss_pred hccc-chh
Q 009990 253 QMEH-GWG 259 (520)
Q Consensus 253 ~~~~-g~~ 259 (520)
.++. ||+
T Consensus 410 sd~l~g~~ 417 (493)
T KOG1330|consen 410 SDKLRGYK 417 (493)
T ss_pred HHHhhCCC
Confidence 8763 565
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.57 Score=48.77 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
+.+.+++..+..|+..|..+.+....+.+..++++ |...++...++-.+|..+|.+++-++..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35555566677898889999999999999888777 9999999888888888888877765543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.057 Score=57.40 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=52.9
Q ss_pred hhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 009990 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (520)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~ 155 (520)
.+...++.|.. .+|+++.+.+.++.+--+..++++|+.|+++|||=-||+.++.+++..+++.+++.+
T Consensus 29 ~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 46677888886 899999999999999999999999999999999833444555555555555555554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.92 E-value=4.7 Score=43.41 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC---ChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~-~~~~~~~~~G~LsDr~~GR~~~i~~~ 142 (520)
-++.++.+.+..++-.+.+..+. -+++.+=. ..+....+-....+ ...+..++-.+|++++ +|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 34566777766666655553222 22222212 33333333222222 3455567789999996 999998888
Q ss_pred HHHHHHHHHHHHhhhccc--ccCCCCCCccccccccCCCCCcc---------hhhHHHHHHHHHHHHHhccccch-hhhh
Q 009990 143 TTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCEPAK---------SWQMLYLYTVLYITGFGAAGIRP-CVSS 210 (520)
Q Consensus 143 ~~~~~lg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~g~g~g~~~~-~~~~ 210 (520)
...+.....++++...+. .++|+. .+. . .....++. .+...++++.-=+.| ....+ ...+
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~-~~~-~---~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg---svvlSlLFW~ 167 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDA-FAD-K---LLAILPPGFKGFIAMFRNWTFSLFYVMAELWG---SVVLSLLFWG 167 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCH-HHH-H---hhhhccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 777776666666542210 112210 000 0 00001111 111122222211111 12222 4688
Q ss_pred hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
+..|.++.++ -.++++++..+.|+|..++..+..++.+
T Consensus 168 fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 168 FANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999888 7889999999999999999999988876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.6 Score=42.78 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHH
Q 009990 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (520)
Q Consensus 189 ~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~ 268 (520)
.-+++..++-.+.|..+|.+.-+-.+..|++. |...++++.+..|+-.-++-...-.-....+-|..|.++.+.
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 33566667778889999999998888888877 999999999988876554322110001123456778888777
Q ss_pred HHHHHHHH
Q 009990 269 MGISNMLF 276 (520)
Q Consensus 269 ~~i~~~~~ 276 (520)
+.++.+..
T Consensus 420 ~~~a~i~~ 427 (454)
T KOG4332|consen 420 LFVASILQ 427 (454)
T ss_pred HHHHHHHH
Confidence 66665443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.06 E-value=22 Score=37.89 Aligned_cols=165 Identities=11% Similarity=0.023 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC---hHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~-~~~~~~~~~G~LsDr~~GR~~~i~~~ 142 (520)
-++.++.+.+..+|-.+.++.+. -+.+.+.++ ++....+-..+.. ...+..++-+++.+++ -|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 35566777766666656554322 233444443 4444444455555 5677888999999985 999998888
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCccccc-cccCC-----CCCc-c---------hhhHHHHHHHHHHHHHhccccch
Q 009990 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRIS-QLLGS-----CEPA-K---------SWQMLYLYTVLYITGFGAAGIRP 206 (520)
Q Consensus 143 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~-~---------~~~~~~l~~~~~l~g~g~g~~~~ 206 (520)
+..+....+++++... | |.+.. |+..- -+.| . .+....+++.-=+.|- -...-
T Consensus 99 ~~~F~~fF~LFa~Vi~-----P----~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgs--lV~S~ 167 (509)
T COG3202 99 LGFFLGFFALFAFVIY-----P----YKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGS--LVLSL 167 (509)
T ss_pred HHHHHHHHHHHHHHHh-----c----cccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHH--HHHHH
Confidence 8777777777666533 1 11111 11000 0111 1 1223333332212221 11112
Q ss_pred hhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhc
Q 009990 207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (520)
Q Consensus 207 ~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (520)
....+..|+...++ -.+++++++...|++..++..+..++.+
T Consensus 168 lFw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888877 7889999999999999999999988865
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.7 Score=35.37 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=34.5
Q ss_pred hhhhccCCcchhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 009990 448 EFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 486 (520)
Q Consensus 448 e~~~~~aP~~~rg~~~g~~~~~~~lg~~l~~~l~~~v~~ 486 (520)
.++.+..|++.|++++++......+|..+++.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 356688999999999999999999999999999988743
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=86.35 E-value=51 Score=35.35 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=52.0
Q ss_pred HHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHH
Q 009990 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (520)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i 271 (520)
++.++.........-..+.+++|++.+ |..+++-+....++...+..++.+.+.+..||..+..+.-+..++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345555556666677788888986553 888999988888888877767778999999998776654444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.00 E-value=14 Score=39.16 Aligned_cols=117 Identities=11% Similarity=0.035 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccchh-HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCc-ch
Q 009990 107 SSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA-KS 184 (520)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~-~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 184 (520)
.-.....|.++-.+|..+..+.- +-+++ +.+.+..+.=++...++.++...+..+ .| .-
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~-----------------~p~~~ 369 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSR-----------------LPVFF 369 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHHHHHHHHHHHHhcCCcccc-----------------CCeee
Confidence 34556667777777766443321 11222 244444444555555555443211000 00 00
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHH
Q 009990 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (520)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i 248 (520)
.+-+..++..++.|+..|-..+....+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 123455556778999999888888888888877655 6666666666666666666544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=83.58 E-value=5.3 Score=42.33 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=37.0
Q ss_pred cccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 009990 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (520)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (520)
....-....+.+++-|+.. -++.+++.....|+|..++..++..+.+.
T Consensus 333 ~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 333 MIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455567889999888 68888888888899988888888877654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.60 E-value=26 Score=35.60 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
++..|.++++....++. +..|.-..++...+...+|- ...+.+. ......+++.+.+..+ +|-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~-f~a~~gl~nlq~~vn~~lg~--~sl~~~y----~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLT-FTAYLGLQNLQTSVNYDLGT--VSLGALY----LSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCccc--chhhhhh----HHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 33344555554444443 44444455566666543332 2222222 2223334444456665 699999988887
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccC
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (520)
.+.+....-. . ..+..++-+-...|+|.+..+..-.++++..-
T Consensus 97 ~Y~lyiA~Nl--------~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 97 PYALYIAANL--------E---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHhhc--------c---------------------hhHHhhccHHHhhccccccccccCcceecHHH
Confidence 6654322111 0 23445555666788888888877777766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 520 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 9e-05 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 7e-84
Identities = 94/515 (18%), Positives = 176/515 (34%), Gaps = 113/515 (21%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---V 330
Query: 411 GKLKLP------------VTCHP--------------RGASQLQRVGIGLAVSILSVIWA 444
+ P + L+++G G+A++ LS I
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVV 390
Query: 445 GL----------------------------------LEFLYEEAPDAMKSIGSAYAALAG 470
G LEF Y +AP AMK ++ L+
Sbjct: 391 GTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450
Query: 471 GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 505
+G + N +KS T + ++
Sbjct: 451 TVGNLWVLLANVSVKSPTVT-----EQIVQTGMSV 480
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 65/457 (14%), Positives = 131/457 (28%), Gaps = 135/457 (29%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
YK F F+L++ + + + + L + P
Sbjct: 174 YKVQCKMDFKIFWLNL--------------------KNCNSPETV-LEMLQKLLYQIDPN 212
Query: 283 YRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
+ R S + + A R+ + + + L+ L V + K + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNV--------QNAKAWNAFN 263
Query: 341 FRC--L----DKA------ALELKEDVINPSPWKLCTVTQVEEVKTLVRLV--------P 380
C L K A ++ L T +EVK+L+ P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TP-DEVKSLLLKYLDCRPQDLP 319
Query: 381 IPACTIM---LNVI---LTEFLTLSVQ-QAYTMNTHMGKLKLPVTC-HPRGASQLQRVGI 432
T L++I + + L + + ++ + P ++ +++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFD 376
Query: 433 GLAV---------SILSVIWAGLLEFLYEEAPDAMKS 460
L+V +LS+IW + + + +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNK 410
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.83 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.82 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.8 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.74 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.54 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.53 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.37 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.02 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.12 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-26 Score=242.98 Aligned_cols=381 Identities=23% Similarity=0.330 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~ 141 (520)
++.++.+.+..++..+++|++..+++.|+++++| ++..+++++.+++.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456677888999999999999999999999999 9999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (520)
+.++..++.+++.++ . +...+++++++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 2 46788899999999999999999999999999887
Q ss_pred hhhhhhhh---hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH
Q 009990 221 KDYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 297 (520)
Q Consensus 221 ~~~~~~r~---~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (520)
|+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++++++++...++.++.+|++++..+..
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence 64 455668999999999999999999988899999998888777666665554444433333333333333
Q ss_pred HHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHh---hhccccCCCCCC-------ccccch
Q 009990 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTVT 367 (520)
Q Consensus 298 ~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~---~~~~~~~~~~~~-------~~~~~~ 367 (520)
+.+..+.+++..+.. .... +........... .+.+.+....+..... ...+. ..+.+| +.++..
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 217 PVIRSALLTKVEGKG-NIGL-VLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------CTTHH-HHHH-HHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSS
T ss_pred HHHHHHHhhhhcccC-ccch-hhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHh
Confidence 333333332211000 0000 000000000000 0000000000000000 00000 000011 011122
Q ss_pred hHHHHHHHHhhchhhhHHHHHHHHHhhhhhHHHHHHHhhcccc---CCe-----------EeCC---------CCCCCCC
Q 009990 368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---GKL-----------KLPV---------TCHPRGA 424 (520)
Q Consensus 368 ~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~---~g~-----------~ip~---------~~~~~~~ 424 (520)
+.++.|+++..+++++....++..+.|..+.+..+..+++... .+. ..|. +|++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 3345566666667777777778888888888777766555422 000 0011 1222223
Q ss_pred CchhHHHhhHHHHHHHHHHH----------------------------------hhHhhhhccCCcchhHHHHHHHHHHh
Q 009990 425 SQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAG 470 (520)
Q Consensus 425 s~~~~i~iG~~~~~~~~~~~----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~~ 470 (520)
+...++.+|.++.+++++.. ....++.+.+|+++||+++|+++...
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 44455666665555544321 12234568899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 009990 471 GLGCFAASILNSIIKSVT 488 (520)
Q Consensus 471 ~lg~~l~~~l~~~v~~~t 488 (520)
++|+.+++.+.+.+...+
T Consensus 451 ~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 451 TVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999886643
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=218.53 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=162.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~ 138 (520)
.+++++.++.+.+..++..+++|++...++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344566788999999999999999999999999998 999999999999999999999999999999993399999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
+.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999999888764 3466788999999999999999999999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+
T Consensus 140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7733 7778888999999999999999999999899999999988777766666554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=181.51 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=148.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+++++.++.+.+..++..+....... +..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34566667777777777666654444 45567889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.+++...... .+.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888332110 357888999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHh
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~g-------------------------~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++.+++++.+.++|..+++.+++++. +..+ |++.|++.++..++..++++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5444 999997766655544444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=190.02 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 456677777777777777665566555 555567 9999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh
Q 009990 147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (520)
Q Consensus 147 ~lg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (520)
.++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-- 152 (451)
T ss_dssp HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence 999998887 4 345678889999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009990 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++++.+.++|..++|.+++++.+..| |++.|++.+++.++..++.++.
T Consensus 153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888 9999998887766555544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=186.19 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcch
Q 009990 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (520)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
...+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.++.......... .. .-...-.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence 4556788889999999999999999996 99999999999999999988764210000000 00 0000012
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc--------c
Q 009990 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 256 (520)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~--------~ 256 (520)
.+...++++|++.|+|.|+..+..+.+++|..|++. |+...+++..+..+|..+++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 467899999999999999999999999999999988 99999999999999999988887665432 2
Q ss_pred chhHHHHHHHHHHH
Q 009990 257 GWGSAFGALAIAMG 270 (520)
Q Consensus 257 g~~~~f~i~~i~~~ 270 (520)
+|++.+.+..+..+
T Consensus 198 ~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 198 GWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred hhHHHhhhhhhhhh
Confidence 46655554444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=175.96 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
+.+.+..++..+........++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34555566666666555555554 5678999999999999999999999999999999996 999999999999999998
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
++.+. .+...+++++++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88875 467888999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 009990 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~ 274 (520)
++++...++|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999877766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-15 Score=159.36 Aligned_cols=169 Identities=11% Similarity=-0.122 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..+.+.+..++..+++..+...++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||++++++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455565656666666666678899999999999999999999999999999999999999996 9999999888776553
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. + .++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-R---RSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-H---HHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-h---hcc
Confidence 3222111000 000 011223333334333333333333333332211 1 155
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~ 269 (520)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56667667778999999999999876 58999988765553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=142.34 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--chhHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~--GR~~~i~~~~~~~ 146 (520)
+.++.+.+..++..+..+++..+++.|+++.+|++..+++.+.+.+.++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 467777788888888888999999999998899999999999999999999999999999999 5 8998888777666
Q ss_pred H-HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 147 ~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
. ++.+++.+. ++ .+...+++..++.|++.++..+...++..|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 6 555544432 11 235566677778899888888888999999999888
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 226 ~r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998887777666665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=128.45 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45666666677777788888999999 8888899999999999999999999999999999996 999999999988888
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+++.+. .+.. .++..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 87776653 1222 234447788898998999999999988853 34
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~ 274 (520)
.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444 456999999999999999888 99998876665544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=127.70 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++...+..++....++....+++.|+.+.++.. ....+...++..+...++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333333334444455566888887766532 33445556666677788899999999996 99999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 766555432 123445555566677666666677889999999877 8
Q ss_pred hhHHHH-HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++++++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 998888 5778889999999999999888888888888777766666655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=122.26 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI 145 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~-----~~~~~ 145 (520)
.+.+.+..++....+......++.|+.+.++.+....+.......+...++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445455555566666777888999988888866777777778888888899999999996 9876544 66666
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+++.+...... + +...+...+++..++.|++.+...+...++..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--T-----------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCC--C-----------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhcC--C-----------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 6666555544311000 0 000234566677788899999988999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
|+.+.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++++...++
T Consensus 420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 66677777776666666655554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=105.05 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++....+....+......+.+. ....++.+..+.+............+...++.++++++.||+ |||+.++.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMA 353 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHH
Confidence 3333333333333333343333 445566677888887777777777788889999999999996 99999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+.+....... .. .....+.+..+..+++ .+..+....+.+|.||.+. |
T Consensus 354 ~~~~~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R 404 (491)
T 4gc0_A 354 IGMFSLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------R 404 (491)
T ss_dssp HHHHHHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------H
T ss_pred HHHHHHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------H
Confidence 8777665542110 00 1122222222222333 2334667789999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcc------cchhHHHHHHHHHHHHHHHHHHhhcccc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~------~g~~~~f~i~~i~~~i~~~~~~~~~~~~ 283 (520)
+++.++.+....+++.+++.+.+++.+. .++.+.|++.+++.+++.+..++..|+.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 9999999998999999888887766442 3455677777777666666665655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-09 Score=110.61 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~-~~ 147 (520)
|.++...+..++.....+++..+++.|+++.+|++..+++.......++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777777888888888899999988999999999999999999999999999999996 772 2333322 22
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0244556677778899999999999999999987 55 8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHH
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i 267 (520)
++..++++...++|..++|.+.+++.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999887778877765443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-06 Score=89.98 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc--ch-----
Q 009990 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (520)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~--g~----- 258 (520)
+...++++.++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34556667788999999999999999999999988 999999999999999999999999987743 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhhccc
Q 009990 259 ----GSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 259 ----~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
+..|++.+++.+++.+++++..++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233655555555555555444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.82 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.67 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.49 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.31 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.4e-19 Score=183.81 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=142.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.+..+++..+...+... ..+.+.+++. ++|++.++.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~-~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRK-NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 45555445444444444332 2344556776 5899999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.++.+++++..... .+...++++|++.|++.|...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------ 149 (447)
T d1pw4a_ 100 AAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 149 (447)
T ss_dssp HHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------
Confidence 99888877642110 245678899999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHhhhhcc-cchhHHHHHHHHHHHHHHHHHHhh
Q 009990 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++++.+.++|..+++.+++.+... .+|++.|++.++..++..++.+..
T Consensus 150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 99999999999999999999988876654 479999888777665555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.3e-15 Score=152.10 Aligned_cols=180 Identities=12% Similarity=-0.092 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
|.+|.+.+..++..+......+.++.|+++++|+|.++.+++.+++.++..+++++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4677777788888888777778899999999999999999999999999999999999999996 999999999998888
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+..++.+....+ ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 887777651100 111122233333333333333333333333222222 1144
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
...+........+..+++.+++++.+. +|+..+........+..++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence 556666777788888999999888764 4555555544444433333333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2e-13 Score=138.95 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=139.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+.+.++.+....++.....+++..+++.|+.+.++++..+++.....+.+...++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345677777788888888889999999999999999999999999999999999999999999996 7765444433333
Q ss_pred HHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhh
Q 009990 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (520)
Q Consensus 147 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (520)
.+..+.+..... .+. .+....++..++.|++.++..+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 376 (447)
T d1pw4a_ 326 TLVTIATIVYWM----NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 376 (447)
T ss_dssp HHHHHHHHHTTS----CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHHHh----ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 332222222111 011 345566667778888888888899999999999888
Q ss_pred hhhHHHHHHHHHHH-HHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 009990 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 227 r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|+++.++.+...++ |..++|.+.+++.+.+||+..|++.+++.+++.+++..
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776 56778999999999999999988877666655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.1e-12 Score=126.11 Aligned_cols=148 Identities=9% Similarity=0.020 Sum_probs=121.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCC
Q 009990 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (520)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
..+.+....+.......++..++.++.+++.||+ ||++++.++.++..++.+++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---------------------- 309 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA---------------------- 309 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc----------------------
Confidence 3344555666777778888899999999999996 99999999999888888777764
Q ss_pred CCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHhHHHhhhhcccc
Q 009990 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHG 257 (520)
Q Consensus 179 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~i~~~i~~~l~~~~g 257 (520)
.+...+++..++.|++.+...+...+++.|.+|++. |++.+++. .....+|..++|.+.|++.+..|
T Consensus 310 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 310 ------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred ------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 245667777788899999999999999999999988 99999985 45677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 258 WGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 258 ~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
|+..|++.+++.++..++.++..+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 378 FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998888777666666555443
|