Citrus Sinensis ID: 009996

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccEEcccccccccHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccHHHHHHHHHHHccccccEEEccccccEEEEccHHccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHccccccccHHHHHHHHHcccccccccccccEEEEEEccccEEEEEEEcccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccc
ccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEccccccEEEEEEcccccccccEccccccccccccccccccccccccccccccccccccccccEEEEccccccccEHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccHHHHHHHHHHHccccccEEEEEcccEEEEcHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEEEccEcHHHccccccccHHHHHHHHHHHHccccEEcccEEEEEEEcccEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccccHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHccc
mgaltsnrkrgdeylnyqipyqnlhiskrprfnytqqnqnqtlissnstvsrmsrypeakpplkrevhapcrtlkfgfadksnqafgskkangygenqnlgirMGNVLRYHLEKAKKSAFgafryfskdkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdigeidgksaeernyhtnlqpssssvltdtnngdvSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQlwplkkpeeeqelprepfipltkEEEAAVERAFSANWRAVLVSHTETGIDITGKIlqclrpgawlnDEVINVYLGLLKErekrepqkflkchffntffynklacgnkgydfraVKRWTSAKKLgygliecdkifvPIHKQIHWCLAVIDRKDKKFqyldslkgrdkkVLGDLARYFVEEVRDkcgkdidvsdweqefvldlpeqangfdcgmFMLKYVDFYsrglglcfdqshmpyfrVRTAKEILRMRAD
mgaltsnrkrgdeylNYQIPYQNLHISKRPRFNYTQQNQnqtlissnstvsrmSRYPEakpplkrevhAPCRTLKFGFADKSNQAfgskkangygenqnLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDkevidadneqekvevisddssveeidaiedgregrslvfdprprgsdenekpvvdiGEIDGKSAEERNyhtnlqpssssvltdtnnGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLwplkkpeeeqelprepfipLTKEEEAAVERAFSANWRAVLVSHtetgiditgKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQyldslkgrdkkvlgDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLcfdqshmpyfrVRTAKEILRMRAD
MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWplkkpeeeqelprepFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
*************YLNYQIPYQNLHIS*******************************************CRTLKFGFA**************YGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDK*****************************************************************************************KMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWP************************AVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEI******
************************************************************************************************************************************************************************************************************************************************************************************************PLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRA*
********KRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
*********RGDEYLNYQIPYQNLHI**********************************PPLKREVHAPCRTLKFG********FG*******G*NQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIED********************************************PSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEE*QELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRA*
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MGALTSNRKRGDEYLNYQIPYQNLHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQELPREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
Q94F30489 Ubiquitin-like-specific p yes no 0.901 0.959 0.494 1e-138
Q8GYL3502 Ubiquitin-like-specific p no no 0.832 0.862 0.478 1e-116
O65278341 Putative ubiquitin-like-s no no 0.451 0.689 0.609 2e-83
O42957568 Ubiquitin-like-specific p yes no 0.425 0.389 0.388 2e-38
P59110640 Sentrin-specific protease no no 0.417 0.339 0.396 3e-36
Q9HC62589 Sentrin-specific protease yes no 0.419 0.370 0.376 3e-36
Q5R7K7589 Sentrin-specific protease yes no 0.419 0.370 0.376 7e-36
Q9P0U3644 Sentrin-specific protease no no 0.417 0.336 0.392 1e-35
Q5RBB1645 Sentrin-specific protease no no 0.417 0.336 0.392 1e-35
Q91ZX6588 Sentrin-specific protease no no 0.440 0.389 0.359 1e-35
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  493 bits (1270), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/540 (49%), Positives = 342/540 (63%), Gaps = 71/540 (13%)

Query: 1   MGALTSNRKRGDEYLNY-----QIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSR 52
           MGA+  NRKR DE  N+       P +N      SK+ RF++     +    SSN T+SR
Sbjct: 1   MGAVAINRKRSDESFNFINQQSTNPLRNSPYFQASKKRRFSFAMSEDSGKPASSNPTISR 60

Query: 53  MSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHL 112
           +SRYP+AK PL+RE+HAP R +           +G  K+N Y E         N      
Sbjct: 61  ISRYPDAKAPLRREIHAPSRGI---------LRYGKAKSNDYCEKD------ANFFVRKY 105

Query: 113 EKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRP 172
           + AK+SA  A R+ +K K+ +D  +E EK EV+SDDSSV+ I+ I+              
Sbjct: 106 DDAKRSALEALRFVNKGKDFVDLGDEVEKEEVVSDDSSVQAIEVID-------------- 151

Query: 173 RGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNG------DVSKMIDLLS 226
              D+ EK                    NLQPS SS +TD   G      D S M+D LS
Sbjct: 152 -CDDDEEK-------------------KNLQPSFSSGVTDVKKGENFRVEDTSMMLDSLS 191

Query: 227 L-----NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQE 281
           L     N   +++ Y+KL+QS +KR SKL+ + FEI LNEK+ + L+Q  P K  E+  E
Sbjct: 192 LDRDVDNDASSLEAYRKLMQSAEKRNSKLEALGFEIVLNEKKLSLLRQSRP-KTVEKRVE 250

Query: 282 LPREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVIN 340
           +PREPFIPLT++EEA V RAFS  N R VL +H  + IDITG++LQCL P AWLNDEVIN
Sbjct: 251 VPREPFIPLTEDEEAEVYRAFSGRNRRKVLATHENSNIDITGEVLQCLTPSAWLNDEVIN 310

Query: 341 VYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECD 400
           VYL LLKERE REP+K+LKCH+FNTFFY KL   + GY+F+AV+RWT+ +KLGY LI+CD
Sbjct: 311 VYLELLKERETREPKKYLKCHYFNTFFYKKLV-SDSGYNFKAVRRWTTQRKLGYALIDCD 369

Query: 401 KIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVS 460
            IFVPIH+ +HW LAVI+ ++ K  YLDSL G D  +L  LA+Y  +E  +K GK ID +
Sbjct: 370 MIFVPIHRGVHWTLAVINNRESKLLYLDSLNGVDPMILNALAKYMGDEANEKSGKKIDAN 429

Query: 461 DWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD 520
            W+ EFV DLP+Q NG+DCGMFMLKY+DF+SRGLGLCF Q HMPYFR+RTAKEILR+RAD
Sbjct: 430 SWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEILRLRAD 489
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
359477277528 PREDICTED: ubiquitin-like-specific prote 0.978 0.964 0.582 1e-166
255551763492 sentrin/sumo-specific protease, putative 0.919 0.971 0.558 1e-158
449460961501 PREDICTED: ubiquitin-like-specific prote 0.940 0.976 0.558 1e-158
224114894516 predicted protein [Populus trichocarpa] 0.957 0.965 0.568 1e-155
356519964512 PREDICTED: ubiquitin-like-specific prote 0.963 0.978 0.536 1e-147
224110442532 predicted protein [Populus trichocarpa] 0.951 0.930 0.552 1e-144
297736850556 unnamed protein product [Vitis vinifera] 0.878 0.821 0.541 1e-143
356564595500 PREDICTED: ubiquitin-like-specific prote 0.942 0.98 0.532 1e-143
297804638499 hypothetical protein ARALYDRAFT_493298 [ 0.921 0.959 0.496 1e-138
18414542489 ubiquitin-like-specific protease ESD4 [A 0.901 0.959 0.494 1e-137
>gi|359477277|ref|XP_002275739.2| PREDICTED: ubiquitin-like-specific protease ESD4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 314/539 (58%), Positives = 393/539 (72%), Gaps = 30/539 (5%)

Query: 1   MGALTSNRKRGDE--YLNYQI--PY-QNL------HISKRPRFNYTQQNQNQTLISSNST 49
           MGALTSNRKRGDE   LN+    PY Q+L      HISK+PR +   Q  +   +SS ST
Sbjct: 1   MGALTSNRKRGDECFTLNHTFLSPYPQDLDRRIDSHISKKPRLSSMPQTPDPA-VSSRST 59

Query: 50  VSRMSRYPEAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLR 109
            SR+ RYPE    L+REVHAPCR +KFGFA  SN+     +     E   L   MGNVL 
Sbjct: 60  ASRIQRYPEPTAKLRREVHAPCRVVKFGFAASSNRE-SRLRIGEVDEKVGLSNVMGNVLS 118

Query: 110 YHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFD 169
              EKAK +A  A RYF KDKEVID  NE+ + ++ S+DSS+EEI+A+EDGREGRS+V D
Sbjct: 119 SQYEKAKNTAIQALRYFRKDKEVIDVGNERGE-DLASEDSSIEEIEAVEDGREGRSVVSD 177

Query: 170 PRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSL-- 227
            R RG+D    P  DI E+     E +N+   L  SSSS +T+ +N ++ KM+D L+L  
Sbjct: 178 ERSRGADGAAVP--DIQEL-----ETKNFDRRLWQSSSSGVTELSNVNL-KMLDSLTLRE 229

Query: 228 -NGEMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEE----QEL 282
            + E+ V  +KK L S +KR SKL+++  +I+  E + +SL  L P KKPEE     QE+
Sbjct: 230 TDVELGVLPHKKWLDSAEKRNSKLRDLSVQIKFLEAQRSSLHALRPAKKPEEVKFNFQEV 289

Query: 283 PREPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINV 341
           PREPF+PLT+EEEA V+RA S+ N R VLV+H  + I+ITG+ILQCL+P AWLNDEVINV
Sbjct: 290 PREPFLPLTQEEEAEVDRALSSINRRKVLVTHEISNIEITGEILQCLQPTAWLNDEVINV 349

Query: 342 YLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDK 401
           YL LLKEREKREP+KFLKCHFFNTFFY KL  G   YD+++V+RWT+ +KLGY L ECDK
Sbjct: 350 YLELLKEREKREPKKFLKCHFFNTFFYKKLISGRNSYDYKSVRRWTTQRKLGYSLSECDK 409

Query: 402 IFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSD 461
           IFVPIH++IHWCLAVI+++DKKFQYLDSLKG D +VL  LARY+V+EV+DK  KDID+S 
Sbjct: 410 IFVPIHQEIHWCLAVINKQDKKFQYLDSLKGMDTRVLKVLARYYVDEVKDKSEKDIDLSS 469

Query: 462 WEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD 520
           WEQE+V DLPEQ NG+DCGMFM+KY DFYSRG+ LCF+Q HMPYFR+RTAKEIL+++AD
Sbjct: 470 WEQEYVEDLPEQKNGYDCGMFMIKYADFYSRGIELCFNQEHMPYFRLRTAKEILKLKAD 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551763|ref|XP_002516927.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223544015|gb|EEF45541.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449460961|ref|XP_004148212.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224114894|ref|XP_002332256.1| predicted protein [Populus trichocarpa] gi|222832021|gb|EEE70498.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519964|ref|XP_003528638.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|224110442|ref|XP_002315520.1| predicted protein [Populus trichocarpa] gi|222864560|gb|EEF01691.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297736850|emb|CBI26051.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564595|ref|XP_003550537.1| PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max] Back     alignment and taxonomy information
>gi|297804638|ref|XP_002870203.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] gi|297316039|gb|EFH46462.1| hypothetical protein ARALYDRAFT_493298 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18414542|ref|NP_567478.1| ubiquitin-like-specific protease ESD4 [Arabidopsis thaliana] gi|75165506|sp|Q94F30.1|ESD4_ARATH RecName: Full=Ubiquitin-like-specific protease ESD4; AltName: Full=Protein EARLY IN SHORT DAYS 4; Short=AtESD4 gi|14423394|gb|AAK62379.1|AF386934_1 Unknown protein [Arabidopsis thaliana] gi|20148439|gb|AAM10110.1| unknown protein [Arabidopsis thaliana] gi|332658261|gb|AEE83661.1| ubiquitin-like-specific protease ESD4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
TAIR|locus:2077632502 ULP1A "UB-like protease 1A" [A 0.701 0.727 0.508 8.2e-106
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.705 0.750 0.519 1.5e-99
DICTYBASE|DDB_G0292290769 DDB_G0292290 "Sentrin-specific 0.742 0.501 0.300 3.3e-41
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.423 0.350 0.391 1.1e-40
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.421 0.340 0.398 1.1e-40
RGD|1303230475 Senp18 "Sumo1/sentrin/SMT3 spe 0.411 0.450 0.405 1.7e-40
RGD|2324522475 LOC100362532 "Sumo1/sentrin/SM 0.411 0.450 0.405 1.7e-40
UNIPROTKB|Q5RBB1645 SENP1 "Sentrin-specific protea 0.421 0.339 0.398 1.8e-40
RGD|1303080475 Senp17 "Sumo1/sentrin/SMT3 spe 0.411 0.450 0.400 3.6e-40
POMBASE|SPBC19G7.09568 ulp1 "SUMO deconjugating enzym 0.367 0.336 0.410 6.4e-39
TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 931 (332.8 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
 Identities = 190/374 (50%), Positives = 244/374 (65%)

Query:   152 EEIDAIEDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLT 211
             E ID ++D      ++ D   R   EN    VD  E++ K+       + +    +  L 
Sbjct:   133 EVID-VDDELGDVEMISDDTSREGVENVAMEVD--EVEEKAEMGNGLFSEVASLKNGSLR 189

Query:   212 --DTNNGDVSKMIDLLSLNGEMTVDVYKKLLQSVQKRGSKLKE---IEFEIELNEKRWAS 266
               + +  + S ++    +    + + Y+K+L+S   R SKLK+   ++F  E       S
Sbjct:   190 VGECSKANSSSLVVNRPVTDVTSFEAYRKVLESAVNRTSKLKDRGFVDFFKERGRALLRS 249

Query:   267 LKQLWXXXXXXXXXXXXXXXFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQ 326
             L   W               F+PL++EEE AV RAFSAN   +LV+H  + IDITGKIL+
Sbjct:   250 LSSFWRQDEEPVEVVQREA-FVPLSREEETAVRRAFSANDSNILVTHKNSNIDITGKILR 308

Query:   327 CLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRW 386
             CL+PG WLNDEVIN+Y+ LLKERE REP+KFLKCHFFNTFF+ KL     GY++ AV+RW
Sbjct:   309 CLKPGKWLNDEVINLYMVLLKEREAREPKKFLKCHFFNTFFFTKLVNSATGYNYGAVRRW 368

Query:   387 TSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFV 446
             TS K+LGY L +CDKIF+PIH  IHW LAVI+ KD+KFQYLDS KGR+ K+L  LARYFV
Sbjct:   369 TSMKRLGYHLKDCDKIFIPIHMNIHWTLAVINIKDQKFQYLDSFKGREPKILDALARYFV 428

Query:   447 EEVRDKCGKDIDVSDWEQEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYF 506
             +EVRDK   D+DVS W QEFV DLP Q NGFDCGMFM+KY+DFYSRGL LCF Q  MPYF
Sbjct:   429 DEVRDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDLCFTQEQMPYF 488

Query:   507 RVRTAKEILRMRAD 520
             R RTAKEIL+++A+
Sbjct:   489 RARTAKEILQLKAE 502
GO:0005634 "nucleus" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0016926 "protein desumoylation" evidence=IDA
GO:0016929 "SUMO-specific protease activity" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303230 Senp18 "Sumo1/sentrin/SMT3 specific peptidase 18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|2324522 LOC100362532 "Sumo1/sentrin/SMT3 specific peptidase 18-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBB1 SENP1 "Sentrin-specific protease 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|1303080 Senp17 "Sumo1/sentrin/SMT3 specific peptidase 17" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPBC19G7.09 ulp1 "SUMO deconjugating enzyme Ulp1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94F30ESD4_ARATH3, ., 4, ., 2, 2, ., 6, 80.49440.90190.9591yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 0.0
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 6e-42
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 2e-37
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
 Score =  664 bits (1715), Expect = 0.0
 Identities = 314/534 (58%), Positives = 374/534 (70%), Gaps = 58/534 (10%)

Query: 1   MGALTSNRKRGDEYLNYQIPYQN---LHISKRPRFNYTQQNQNQTLISSNSTVSRMSRYP 57
           MGALTSN KR DE  N   P  N    HISK+PRF+  Q   +    SSNST SR+SRYP
Sbjct: 1   MGALTSNHKRSDECFNN--PLSNSPDFHISKKPRFSMAQTPDSGNQHSSNSTASRISRYP 58

Query: 58  EAKPPLKREVHAPCRTLKFGFADKSNQAFGSKKANGYGENQNLGIRMGNVLRYHLEKAKK 117
           E K PL+REVHAPCR LKFG  DKS      KK       Q LG  MGN L    + AK+
Sbjct: 59  EVKSPLRREVHAPCRILKFG-RDKSTD-SSEKK-------QGLGNVMGNFLSRKYDMAKR 109

Query: 118 SAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAIEDGREGRSLVFDPRPRGSDE 177
           SA  A RY+ KDKEV+D  +E  KVE+ISDDSS+EE++A+E                   
Sbjct: 110 SALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAVEM------------------ 151

Query: 178 NEKPVVDIGEIDGKSAEERNYHTNLQPS-SSSVLTDTNNG-----DVSKMIDLLSLNG-- 229
                      D    EE+     +    SS V   T NG     D SKM+D L LN   
Sbjct: 152 -----------DVDEVEEKA---EMGNGLSSDVKIVTKNGNLRVEDTSKMLDSLVLNRPE 197

Query: 230 --EMTVDVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPLKKPEEEQELPREPF 287
              ++V+ Y+KLLQS ++R SKLK++ FEIELNEKR +SL+Q  P  K E  +E+PREPF
Sbjct: 198 TDVLSVEAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRPKPK-EPVEEVPREPF 256

Query: 288 IPLTKEEEAAVERAFSAN-WRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 346
           IPLT+EEE  V+RAFSAN  R VLV+H  + IDITG+IL+CL+PGAWLNDEVIN+YL LL
Sbjct: 257 IPLTREEETEVKRAFSANNRRKVLVTHENSNIDITGEILRCLKPGAWLNDEVINLYLELL 316

Query: 347 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 406
           KERE REP+KFLKCHFFNTFFY KL  G  GYD++AV+RWT+ KKLGY LI+CDKIFVPI
Sbjct: 317 KEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFVPI 376

Query: 407 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 466
           H++IHW LAVI++KD+KFQYLDSLKGRD K+L  LA+Y+V+EV+DK  KDIDVS WEQEF
Sbjct: 377 HQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQEF 436

Query: 467 VLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD 520
           V DLPEQ NG+DCGMFM+KY+DFYSRGLGLCF Q HMPYFR+RTAKEILR++AD
Sbjct: 437 VEDLPEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILRLKAD 490

Length = 490
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 100.0
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.91
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.47
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.4
PRK14848317 deubiquitinase SseL; Provisional 96.69
PRK11836403 deubiquitinase; Provisional 95.55
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 94.84
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 86.58
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-129  Score=1026.74  Aligned_cols=481  Identities=63%  Similarity=1.042  Sum_probs=443.1

Q ss_pred             CCcccccCCCCCccc-ccCCCCCCccccCCCCcccccccCCc-ccCcccccccccccCCCCCCcccccccCCcccccccc
Q 009996            1 MGALTSNRKRGDEYL-NYQIPYQNLHISKRPRFNYTQQNQNQ-TLISSNSTVSRMSRYPEAKPPLKREVHAPCRTLKFGF   78 (520)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (520)
                      |||||+|+||+++|+ |+++++|+||+||+|||| |+|++.. ..+||||||||||||||+|+||||||||||||+||| 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (490)
T PLN03189          1 MGALTSNHKRSDECFNNPLSNSPDFHISKKPRFS-MAQTPDSGNQHSSNSTASRISRYPEVKSPLRREVHAPCRILKFG-   78 (490)
T ss_pred             CCcccccccccccccccccccCCccccccCCCcc-ccccccccCCccccccccchhcCCCccchhhhhhcCchhhhhcc-
Confidence            999999999999999 679999999999999999 4555511 128999999999999999999999999999999999 


Q ss_pred             cccccccccccccCCCCccc-ccccchhhHHHHhHHHHHhhhhhcccccccCceeeecCccccceeeeccCcchhhhhhh
Q 009996           79 ADKSNQAFGSKKANGYGENQ-NLGIRMGNVLRYHLEKAKKSAFGAFRYFSKDKEVIDADNEQEKVEVISDDSSVEEIDAI  157 (520)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (520)
                               ++|+++++++. ++||+|||||++|||+||++||+|+||++|||||||||||.|++++||||||||||+||
T Consensus        79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (490)
T PLN03189         79 ---------RDKSTDSSEKKQGLGNVMGNFLSRKYDMAKRSALDALRYYRKDKEVVDVGDELGKVEMISDDSSIEEVEAV  149 (490)
T ss_pred             ---------cccccchhhhhcchhhhHHHHhhhhhHHHHHHHHHHHHHHhcCCeeeecccccccceeccCccchhhhhee
Confidence                     99999999887 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCcccccCCCCCCCCCCCCCccccccccccchhhcccCCCcccccccccccCcccchhhhhccccccc----ccCh
Q 009996          158 EDGREGRSLVFDPRPRGSDENEKPVVDIGEIDGKSAEERNYHTNLQPSSSSVLTDTNNGDVSKMIDLLSLNG----EMTV  233 (520)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  233 (520)
                      |.+..+    .+++..++.+      +.++|..+     +++|++           +|.++++|++||.|++    ++++
T Consensus       150 ~~~~~~----~~~~~~~~~~------~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  203 (490)
T PLN03189        150 EMDVDE----VEEKAEMGNG------LSSDVKIV-----TKNGNL-----------RVEDTSKMLDSLVLNRPETDVLSV  203 (490)
T ss_pred             ecccch----hhhccccCcc------ccccceEe-----ecCCcc-----------cccchhhhhhceeecCcccccccc
Confidence            954422    1222233333      23555555     789999           9999999999999998    7999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhcCCC-CCCcccccCCCCCCCCCCHHHHHHHHHHHcc-CCCceEe
Q 009996          234 DVYKKLLQSVQKRGSKLKEIEFEIELNEKRWASLKQLWPL-KKPEEEQELPREPFIPLTKEEEAAVERAFSA-NWRAVLV  311 (520)
Q Consensus       234 ~~y~~~~~~~~~r~~~l~~~~~~~~~~e~r~~~~~~~~p~-~~~~~~~~~p~~~~~pLS~e~~~~V~~als~-~~~~vLv  311 (520)
                      |+|+++++++++|+++|++++++++++|++++.+++.+|. +++.+  ++|+++|+|||+|++++|+++|++ +.+++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pLT~e~~~~V~~al~~~~~~~vlv  281 (490)
T PLN03189        204 EAYRKLLQSAERRNSKLKDLGFEIELNEKRLSSLRQSRPKPKEPVE--EVPREPFIPLTREEETEVKRAFSANNRRKVLV  281 (490)
T ss_pred             HHHHHHHHHHHhhcchhhhccceeehhhhHHHHHhhhccCcccccc--ccccccCcCCCHHHHHHHHHHhcCCCccceee
Confidence            9999999999999999999999999999999999998886 55554  899999999999999999999998 5578999


Q ss_pred             ecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeeehhhhhhhccCCCCCchhHHHHhhhccc
Q 009996          312 SHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKK  391 (520)
Q Consensus       312 s~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~FnSfFy~kL~~~~~~~~y~~VrRWtk~kk  391 (520)
                      ++++++|+||++||.||.|++||||+||||||.+|.++...+|..+++||+||||||++|...+.+++|.+|+|||+.++
T Consensus       282 s~~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~kK  361 (490)
T PLN03189        282 THENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKK  361 (490)
T ss_pred             ecCCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhhcc
Confidence            98889999999999999999999999999999999998777777889999999999999998766789999999999888


Q ss_pred             cccCcccCCceeeeeecCcceEEEEEeccCCcceecccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeccCCCC
Q 009996          392 LGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEFVLDLP  471 (520)
Q Consensus       392 v~~dIfskD~IfIPIN~~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~~yL~~E~k~k~g~~~d~s~W~~~~v~~vP  471 (520)
                      +++++|++|+||||||.+.||+|+|||++.++|.|||||++.+..+++.|++||..|++++.+.+++.+.|...++.++|
T Consensus       362 igv~Lfs~D~IFIPIh~n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~vP  441 (490)
T PLN03189        362 LGYHLIDCDKIFVPIHQEIHWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDLP  441 (490)
T ss_pred             cccccccCceEEeeeecCCeeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcCCCcchhcceeccCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999987778999


Q ss_pred             CCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhccC
Q 009996          472 EQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMRAD  520 (520)
Q Consensus       472 QQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr~d  520 (520)
                      ||.||+|||||||+||+|+++|.+++|+|+||++||++|++||+++|+|
T Consensus       442 QQ~NG~DCGVFVL~yAE~~SrG~~LtFSQeDMp~fRrRma~EIl~~r~~  490 (490)
T PLN03189        442 EQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILRLKAD  490 (490)
T ss_pred             CCCCCCCHHHHHHHHHHHHcCCCCCCcChhhhHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999987

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 9e-37
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 6e-36
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 3e-35
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 4e-35
2iyc_A226 Senp1 Native Structure Length = 226 6e-35
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 1e-34
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 6e-34
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 2e-33
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 2e-21
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 2e-20
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 7e-08
2oiv_A186 Structural Analysis Of Xanthomonas Xopd Provides In 1e-05
2oix_A186 Xanthomonas Xopd C470a Mutant Length = 186 7e-05
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/232 (37%), Positives = 128/232 (55%), Gaps = 13/232 (5%)
Query: 287 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 346
            + LT++ E  +  A     +  ++S +   + IT   +Q L+   WLNDEVIN Y+ LL
Sbjct: 2   LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 60
Query: 347 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 406
            ER K+  Q +   H F+TFFY KL  G     ++AVKRWT     G  L E + I VPI
Sbjct: 61  VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 110
Query: 407 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWEQEF 466
           H+++HW L VID + K  +YLDS+  +  ++   L +Y  +E + K   D+++ +W    
Sbjct: 111 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHS 170
Query: 467 V--LDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILR 516
           +   ++P+Q NG DCGMF  KY D+ SR   + F Q  MP FR +   EIL 
Sbjct: 171 MKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights Into Substrate Specificity Of Ubiquitin-Like Protein Proteases Length = 186 Back     alignment and structure
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 7e-62
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 5e-58
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 7e-58
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 8e-35
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 2e-33
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 8e-28
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score =  201 bits (513), Expect = 7e-62
 Identities = 86/238 (36%), Positives = 124/238 (52%), Gaps = 13/238 (5%)

Query: 283 PREPFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVY 342
             + F  +T+E E  ++  F    +  ++S     + IT K +Q L    WLNDE+IN Y
Sbjct: 10  SEDEFPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFY 68

Query: 343 LGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKI 402
           + +L ER K +       H FNTFF+ KL        ++AVKRWT    +       D +
Sbjct: 69  MNMLMERSKEKGLP--SVHAFNTFFFTKLKTA----GYQAVKRWTKKVDVF----SVDIL 118

Query: 403 FVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDW 462
            VPIH  +HWCLAV+D + K   Y DS+ G + +    L +Y  +E  DK  K+ D + W
Sbjct: 119 LVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGW 178

Query: 463 E--QEFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 518
           +   +   ++P+Q NG DCGMF  KY D  ++   + F Q HMPYFR R   EIL  +
Sbjct: 179 QLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.98
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 96.39
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
Probab=100.00  E-value=4.6e-51  Score=401.69  Aligned_cols=223  Identities=39%  Similarity=0.695  Sum_probs=204.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHcc-CCCceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCccccccee
Q 009996          284 REPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHF  362 (520)
Q Consensus       284 ~~~~~pLS~e~~~~V~~als~-~~~~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~  362 (520)
                      ++.|+|||+|++++|++++.+ ++++|++.  .+++.|+++|+.+|.+++||||+|||||+.+|.++....  ..+++|+
T Consensus        11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~--~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~   86 (238)
T 2xph_A           11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSE--AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHA   86 (238)
T ss_dssp             -CCCCCCCHHHHHHHHHHSSSSCTTCCCEE--ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEE
T ss_pred             ccCCCCCCHHHHHHHHHHHcCCChhheeec--CCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceee
Confidence            367899999999999999987 67888875  479999999999999999999999999999998876432  3578999


Q ss_pred             eehhhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEeccCCcceecccCCCCCHHHHHHHH
Q 009996          363 FNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLA  442 (520)
Q Consensus       363 FnSfFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfskD~IfIPIN~~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~  442 (520)
                      |+||||++|...    +|..|++|++.    .++|++|+||||||.++||+|+|||+++++|+|||||++.+...+..|.
T Consensus        87 f~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~  158 (238)
T 2xph_A           87 FNTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL  158 (238)
T ss_dssp             CCTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred             eecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHH
Confidence            999999999876    79999999973    5799999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCceee--ccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhc
Q 009996          443 RYFVEEVRDKCGKDIDVSDWEQE--FVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR  518 (520)
Q Consensus       443 ~yL~~E~k~k~g~~~d~s~W~~~--~v~~vPQQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr  518 (520)
                      .||..++..+.+..++...|+..  ...++|||.||+|||||||+||++++++.+++|+|++|++||++|+.+|++++
T Consensus       159 ~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~  236 (238)
T 2xph_A          159 QYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK  236 (238)
T ss_dssp             HHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCC
Confidence            99999999998888999999875  35789999999999999999999999999999999999999999999999986
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 520
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 5e-54
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 3e-53
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 3e-49
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 3e-31
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  179 bits (455), Expect = 5e-54
 Identities = 85/234 (36%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 287 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 346
           F  +T+E E  ++  F        V      + IT K +Q L    WLNDE+IN Y+ +L
Sbjct: 2   FPEITEEMEKEIKNVFRNG-NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNML 60

Query: 347 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 406
            ER K +       H FNTFF+ K     K   ++AVKRWT    +       D + VPI
Sbjct: 61  MERSKEKGLP--SVHAFNTFFFTK----LKTAGYQAVKRWTKKVDV----FSVDILLVPI 110

Query: 407 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDVSDWE--Q 464
           H  +HWCLAV+D + K   Y DS+ G + +    L +Y  +E  DK  K+ D + W+   
Sbjct: 111 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFS 170

Query: 465 EFVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR 518
           +   ++P+Q NG D GMF  KY D  ++   + F Q HMPYFR R   EIL  +
Sbjct: 171 KKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 224
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 95.11
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-45  Score=351.57  Aligned_cols=221  Identities=39%  Similarity=0.679  Sum_probs=202.3

Q ss_pred             CCCCCCHHHHHHHHHHHcc-CCCceEeecCCCCeeechhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccccceeee
Q 009996          286 PFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFN  364 (520)
Q Consensus       286 ~~~pLS~e~~~~V~~als~-~~~~vLvs~~~~~i~It~~DL~~L~~g~WLNDeVInfYl~lL~~r~~~~p~~~~r~~~Fn  364 (520)
                      .|+|||++++.++.+++.. ++++++++  .+++.||++|+++|.+++||||.|||||+.+|.++....  ...++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~~--~~~~~~~~~   76 (225)
T d2iy1a1           1 EFPEITEEMEKEIKNVFRNGNQDEVLSE--AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHAFN   76 (225)
T ss_dssp             CCCCCCHHHHHHHHHHSSSSCTTCEEEE--ETTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTST--TSCCEEECC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCcCceeee--cCCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhh--ccCceEEec
Confidence            3789999999999999998 77889986  479999999999999999999999999999999876543  346899999


Q ss_pred             hhhhhhhccCCCCCchhHHHHhhhccccccCcccCCceeeeeecCcceEEEEEeccCCcceecccCCCCCHHHHHHHHHH
Q 009996          365 TFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARY  444 (520)
Q Consensus       365 SfFy~kL~~~~~~~~y~~VrRWtk~kkv~~dIfskD~IfIPIN~~sHW~L~VId~~~k~I~~yDSLg~~~~~vl~~L~~y  444 (520)
                      |+|+..+...    +|..+++|++    +.+++++++||||||.++||+|+||+++.++|++||||++.+......+..+
T Consensus        77 t~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~I~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~  148 (225)
T d2iy1a1          77 TFFFTKLKTA----GYQAVKRWTK----KVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQY  148 (225)
T ss_dssp             TTHHHHHHHS----CGGGTGGGGT----TCCGGGSSEEEEEEECSSCEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHH
T ss_pred             cHHHhhhccc----CHHHHHHHHh----ccccccCCEEEEEEeCCCCEEEEEEEeccceEEEEecCCCCchHHHHHHHHH
Confidence            9999988877    7899999997    3578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCceee--ccCCCCCCCCCCchHHHHHHHHHHHHcCCCCccCCCChHHHHHHHHHHHHhhc
Q 009996          445 FVEEVRDKCGKDIDVSDWEQE--FVLDLPEQANGFDCGMFMLKYVDFYSRGLGLCFDQSHMPYFRVRTAKEILRMR  518 (520)
Q Consensus       445 L~~E~k~k~g~~~d~s~W~~~--~v~~vPQQ~Ng~DCGVFvL~fae~lsrg~~l~FtQ~dMp~~R~rma~EIl~lr  518 (520)
                      +..++..+.+..++...|+..  .+.++|||.||+|||||||+||++++.+.+++|+|++|++||++|+.+|++.+
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~~  224 (225)
T d2iy1a1         149 LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK  224 (225)
T ss_dssp             HHHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCccCcccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhCc
Confidence            999998888888888899764  35789999999999999999999999999999999999999999999999876
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure