Citrus Sinensis ID: 010040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccccccccEEcccccccEEEccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEccccccEEEEEEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEccEEEcccccEEEEEcEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHcccccccccc
Coil and Loop (DISEMBL)
mwdlndslkdieeseacssqktsidgddekgkqvgsvsnsSSSAVviengsdeeigASERRLlsrsggskiFGVCLYQeameesepeppvtrqffpvdfqeqqatsseagagglafpranwvgvkfcqsepiveagksvieapqplkksrrgprsrssqyrgvtfyrrtgrweshiwdsgkqvylgGFDTAHAAARAYDRAAIKFrgaeadinfsIEDYEDDLKQMSNLTKEEFVHVLRRqstgfprgsskyrgvtlhkcGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAvkcngkdavtnfdpslyqdelkasghgvdhnldlslgssasnqqsSADFANRMQYtvmerpapaslpnevdwhnrgyrpkqqeaysrqhdlpykrdgyseAETMQLLSQthlqspassslnksseMQRYEQFRRSGEshllhmvppqcnqsnyqthqltpgsskrgrignelslstndhhqqwqsgphmfataaassgfpqqirsshsqnwlqnngfhslvrps
Flexible Loop (DISEMBL)
mwdlndslkdieeseacssqktsidgddekgkqvgsvsnssssavviengsdeeigaserrllsrsggsKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVeagksvieapqplkksrrgprsrssqyrgvtfyrrtgrweshiwDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLrrqstgfprgsskyrgvtlhkcgrwEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPASLPNEVDWHNRgyrpkqqeaysrqhDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGPHMFATAAASSGFPQQIRSSHsqnwlqnngfhslvrps
Low Complexity Region (SEG)
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQvgsvsnssssavvIENGSDEEIGASErrllsrsggsKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKsrrgprsrssQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTahaaaraydraaIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDlslgssasnqqssaDFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS
Disordered region (IsUnstruct)
*********************************************************************KIFGVCLYQ*********************************GGLAFPRANWVGVKFCQSEPIVE*************************YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY***************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MWDLNDSLK**********************************************************************************************************************************************************TFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSL**************************************************************************************************************************************************************************************************WL**NGFH******
Disordered Region (DISEMBL)
MWDLNDSLKDI************************************ENGSDEEIGASERRLLSRSGGSKIFGVCLYQEA*********VTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAP****************YRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLS***********************FRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGPHMFATAA*************SQNWLQNNGFHSLVRPS
Disordered Region (DISPRO)
***********************************************************RRLLSRSGGSKIFGVCLYQE*****EPEPPVTRQFFPVDF*********************************************************SSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQD**K*****************************************************************QHDLPYKRDGYSEAETMQLLSQTHLQSPASSS*****EMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTP*************L********W*SGPH**********FPQQIR**HSQNW*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
P47927	432	Floral homeotic protein A	yes	no	0.589	0.708	0.640	1e-104
Q9FH95	352	AP2-like ethylene-respons	no	no	0.454	0.670	0.718	2e-82
Q9SK03	449	Ethylene-responsive trans	no	no	0.552	0.639	0.504	1e-62
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.435	0.465	0.520	2e-53
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.341	0.317	0.492	1e-44
Q38914	555	AP2-like ethylene-respons	no	no	0.346	0.324	0.479	2e-44
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.339	0.309	0.481	4e-44
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.302	0.378	0.517	8e-44
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.418	0.374	0.427	8e-44
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.418	0.374	0.423	2e-43

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/367 (64%), Positives = 262/367 (71%), Gaps = 61/367 (16%)

Query: 1   MWDLND----SLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIG 56
           MWDLND    + ++ E  E C S  +         K+VGS SNSSSSAVVIE+GSD++  
Sbjct: 1   MWDLNDAPHQTQREEESEEFCYSSPS---------KRVGSFSNSSSSAVVIEDGSDDD-- 49

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA- 115
                                 E        P VT QFFP           ++  GG+A 
Sbjct: 50  ----------------------ELNRVRPNNPLVTHQFFP---------EMDSNGGGVAS 78

Query: 116 -FPRANWVGVKFCQSEPIV--EAGKS------VIEAPQPLKKSRRGPRSRSSQYRGVTFY 166
            FPRA+W GVKFCQS+      AGK+      V+E  QPLKKSRRGPRSRSSQYRGVTFY
Sbjct: 79  GFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFY 138

Query: 167 RRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQM 226
           RRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF+I+DY+DDLKQM
Sbjct: 139 RRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQM 198

Query: 227 SNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE 286
           +NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE
Sbjct: 199 TNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVE 258

Query: 287 AARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHG-----VDHNLDLSLGSSASNQQSS 341
           AARAYD+AA+KCNGKDAVTNFDPS+Y +EL A   G      DHNLDLSLG+SA+++  S
Sbjct: 259 AARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESSGNPTTPQDHNLDLSLGNSANSKHKS 318

Query: 342 ADFANRM 348
            D   RM
Sbjct: 319 QDMRLRM 325

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  307 bits (786), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/252 (71%), Positives = 196/252 (77%), Gaps = 16/252 (6%)

Query: 89  PVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKK 148
           PVTR FFP       A S E G     F   N VG    +S+P         E   P+KK
Sbjct: 40  PVTRNFFP-------AQSMEPGVRWSGF---NSVG----KSDPSGSGRPEEPEISPPIKK 85

Query: 149 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGA 208
           SRRGPRSRSSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG 
Sbjct: 86  SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 145

Query: 209 EADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMG 268
           +ADINF IEDY DDLKQM NLTKEEF+HVLRRQSTGFPRGSSKYRGVTLHKCGRWE+R+G
Sbjct: 146 DADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLG 205

Query: 269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGV--DHN 326
           QFL KKYVYLGLFDTE+EAARAYD+AA+KCNGKDAVTNFDP +Y++E   S       HN
Sbjct: 206 QFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSETTRNGHN 265

Query: 327 LDLSLGSSASNQ 338
           L LSLG S+S +
Sbjct: 266 LGLSLGESSSEE 277

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 166/329 (50%), Positives = 207/329 (62%), Gaps = 42/329 (12%)

Query: 27  DDEKGKQVGSVSNSSSSAVVIENGSDEEIGASERRLLSRSGGSKIFGVCLYQEAMEESEP 86
           D+  G +V     S+SS  VI    DE+  ++    LS      I  V       E    
Sbjct: 28  DNSAGNRVEESGTSTSS--VINADGDEDSCSTRAFTLS----FDILKVGSSSGGDESPAA 81

Query: 87  EPPVTRQFFPVD-----FQEQQATSSEAGAGGLAFPRANWVGVKFCQ----SEPIVEAGK 137
              VT++FFPV       ++ + +SS            NW+ + F +       +V    
Sbjct: 82  SASVTKEFFPVSGDCGHLRDVEGSSSSR----------NWIDLSFDRIGDGETKLVTPVP 131

Query: 138 SVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARA 197
           +    P  +KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARA
Sbjct: 132 TPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 191

Query: 198 YDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 257
           YDRAAIKFRG +ADINF++ DYE+D+KQ+ NL+KEEFVH+LRRQSTGF RGSSKYRGVTL
Sbjct: 192 YDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTL 251

Query: 258 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELK 317
           HKCGRWEARMGQFLGKK               AYD+AA+  NG++AVTNF+ S YQ+E+ 
Sbjct: 252 HKCGRWEARMGQFLGKK---------------AYDKAAINTNGREAVTNFEMSSYQNEIN 296

Query: 318 ASGHG--VDHNLDLSLGSSASNQQSSADF 344
           +  +   +D NL +SL +  + +Q+   F
Sbjct: 297 SESNNSEIDLNLGISLSTGNAPKQNGRLF 325

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  211 bits (536), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/246 (52%), Positives = 161/246 (65%), Gaps = 20/246 (8%)

Query: 90  VTRQFFPV----DFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQP 145
           +T++FFPV    +F +  A SS +    ++F R    G          +A + +    QP
Sbjct: 88  MTKEFFPVAKGMNFMDSSAQSSRSTVD-ISFQRGKQGGDFIGSGSGGGDASRVMQPPSQP 146

Query: 146 LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKF 205
           +KKSRRGPRS+SSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAA+KF
Sbjct: 147 VKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKF 206

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEA 265
           RG EADINF I DYE+DLKQM+NL+KEE V VLRRQS+GF R +S+Y+GV L K G W A
Sbjct: 207 RGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGA 266

Query: 266 RMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGVDH 325
           +M Q  G                   D+AAV+  G++A +  +P   +   +A+   +D 
Sbjct: 267 QMEQLHGNM---------------GCDKAAVQWKGREAASLIEPHASRMIPEAANVKLDL 311

Query: 326 NLDLSL 331
           NL +SL
Sbjct: 312 NLGISL 317

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 127/197 (64%), Gaps = 20/197 (10%)

Query: 143 PQPLKKSRRGPRS---------RSSQYRGVTFYRRTGRWESHIWDS----------GKQV 183
           P PL  S   P           R+S YRGVT +R TGR+E+H+WD+          G+QV
Sbjct: 178 PNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQV 237

Query: 184 YLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQST 243
           YLGG+D    AARAYD AA+K+ G     NF I +YE +L++M ++T++EFV  LRR+S+
Sbjct: 238 YLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSS 297

Query: 244 GFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKD 302
           GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +
Sbjct: 298 GFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLN 357

Query: 303 AVTNFDPSLYQDELKAS 319
           AVTNFD S Y  +  AS
Sbjct: 358 AVTNFDISRYDVKSIAS 374

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 130/196 (66%), Gaps = 16/196 (8%)

Query: 128 QSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDS-------- 179
           Q + +V   K ++      +KS      R+SQYRGVT +R TGR+E+H+WD+        
Sbjct: 257 QEDVVVVGQKQIVH-----RKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHS 311

Query: 180 --GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
             G+QVYLGG+D    AARAYD AA+K+ G     NFS E+Y+ +++ M N+T++E+V  
Sbjct: 312 RKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371

Query: 238 LRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAV 296
           LRR+S+GF RG+S YRGVT  H+ GRW+AR+G+  G K +YLG F T+ EAA AYD AA+
Sbjct: 372 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAI 431

Query: 297 KCNGKDAVTNFDPSLY 312
           K  G +AVTNFD + Y
Sbjct: 432 KFRGTNAVTNFDITRY 447

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  179 bits (454), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 13/189 (6%)

Query: 135 AGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDS----------GKQVY 184
           +G +++EA    +++      R+S YRGVT +R TGR+E+H+WD+          G+QVY
Sbjct: 168 SGGAIVEATP--RRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVY 225

Query: 185 LGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTG 244
           LGG+D    AARAYD AA+K+ G     NF I +YE ++++M N+T++EFV  +RR+S+G
Sbjct: 226 LGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSG 285

Query: 245 FPRGSSKYRGVTL-HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDA 303
           F RG+S YRGVT  H+ GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +A
Sbjct: 286 FSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNA 345

Query: 304 VTNFDPSLY 312
           VTNF+ + Y
Sbjct: 346 VTNFEINRY 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  178 bits (452), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 121/168 (72%), Gaps = 11/168 (6%)

Query: 156 RSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIKF 205
           R+SQYRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K+
Sbjct: 220 RTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKY 279

Query: 206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWE 264
            G    +NF + +YE ++++++N+ ++EFV +LRR S+GF RG+S YRGVT  H+ GRW+
Sbjct: 280 WGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQ 339

Query: 265 ARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 312
           AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVTNFD + Y
Sbjct: 340 ARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  178 bits (452), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 12/229 (5%)

Query: 96  PVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPL-KKSRRGPR 154
           PVD  + Q   + A    L+   +         S  +V  GK++ ++ +   KK+     
Sbjct: 146 PVDNVDNQENGNGAKGLSLSMNSSTSCDNNNYSSNNLVAQGKTIDDSVEATPKKTIESFG 205

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIK 204
            R+S YRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 205 FRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRW 263
           + G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 264 EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 312
           +AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 141/229 (61%), Gaps = 12/229 (5%)

Query: 96  PVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPL-KKSRRGPR 154
           PVD  + Q   + A    L+   +         +  +V  GK++ ++ +   KK+     
Sbjct: 146 PVDNVDNQENGNAAKGLSLSMNSSTSCDNNNDSNNNVVAQGKTIDDSVEATPKKTIESFG 205

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTAHAAARAYDRAAIK 204
            R+S YRGVT +R TGR+E+H+WD+          G+QVYLGG+D    AARAYD AA+K
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 205 FRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRW 263
           + G     NF + +YE ++++M ++T++E+V  LRR+S+GF RG+S YRGVT  H+ GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 264 EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 312
           +AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
195979199	512	transcription factor APETALA2 [Citrus tr	0.986	1.0	0.973	0.0
359480728	511	PREDICTED: floral homeotic protein APETA	0.955	0.970	0.674	1e-170
296082382	490	unnamed protein product [Vitis vinifera]	0.924	0.979	0.661	1e-161
224096732	534	AP2 domain-containing transcription fact	0.961	0.934	0.644	1e-160
147791287	520	hypothetical protein VITISV_042267 [Viti	0.847	0.846	0.635	1e-150
342360009	517	APETALA2 [Betula platyphylla]	0.959	0.963	0.644	1e-147
317106692	493	JHL03K20.2 [Jatropha curcas]	0.888	0.935	0.611	1e-146
21717332	549	transcription factor AHAP2 [Malus x dome	0.971	0.918	0.593	1e-146
5081555	519	PHAP2A protein [Petunia x hybrida]	0.961	0.961	0.601	1e-144
357482811	511	Transcription factor APETALA2 [Medicago	0.947	0.962	0.609	1e-143

>gi|195979199|gb|ACG63707.1| transcription factor APETALA2 [Citrus trifoliata]

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/519 (97%), Positives = 507/519 (97%), Gaps = 7/519 (1%)

Query: 1   MWDLNDSLKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER 60
           MWDLNDSLKDI+ESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER
Sbjct: 1   MWDLNDSLKDIKESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGASER 60

Query: 61  RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN 120
           RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN
Sbjct: 61  RLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRAN 120

Query: 121 WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG 180
           WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG
Sbjct: 121 WVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSG 180

Query: 181 KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR 240
           KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR
Sbjct: 181 KQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRR 240

Query: 241 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG
Sbjct: 241 QSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300

Query: 301 KDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPAPAS 360
           KDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSS DFANRMQYTVMERPAPAS
Sbjct: 301 KDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSTDFANRMQYTVMERPAPAS 360

Query: 361 LPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSE 420
           LPNE DWHNRGYRPK       QHD PYKR GYSEAETMQLLSQTHLQSPASSSLNKSSE
Sbjct: 361 LPNEADWHNRGYRPK-------QHDPPYKRGGYSEAETMQLLSQTHLQSPASSSLNKSSE 413

Query: 421 MQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQS 480
           +QRYEQFRRSGESHLLHMVPPQCNQSNYQT QLTPGSSKRGRIGNELSLSTNDHHQQWQS
Sbjct: 414 IQRYEQFRRSGESHLLHMVPPQCNQSNYQTRQLTPGSSKRGRIGNELSLSTNDHHQQWQS 473

Query: 481 GPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS 519
           GPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS
Sbjct: 474 GPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS 512

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480728|ref|XP_002283045.2| PREDICTED: floral homeotic protein APETALA 2 [Vitis vinifera] gi|226377504|gb|ACO52508.1| transcription factor APETALA2 [Vitis vinifera]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/534 (67%), Positives = 411/534 (76%), Gaps = 38/534 (7%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSS--AVVIENGSDEEIG 56
           MWDLNDS   +  +ESE CSSQKTS+D  D+KGK+VGSVSN +SS  AVVIE+GSDEE G
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDG 60

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAF 116
             ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AF
Sbjct: 61  --ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAF 109

Query: 117 PRANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 173
           PRA+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWE
Sbjct: 110 PRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 169

Query: 174 SHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
           SHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEE
Sbjct: 170 SHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEE 229

Query: 234 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDR 293
           FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+
Sbjct: 230 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDK 289

Query: 294 AAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVM 353
           AA+KCNGK+AVTNFDPS+Y++EL +SG+  DHNLDLSLG SAS +Q++ +  +  Q   M
Sbjct: 290 AAIKCNGKEAVTNFDPSIYENELNSSGNAADHNLDLSLGGSAS-KQNNLELGDDSQVVTM 348

Query: 354 ERPAPASLPNEVDWHNRGYRPK---QQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSP 410
           ++ +   +  E DW +RG+RPK   QQEA     D   +R+GY+E ETMQLLS THLQSP
Sbjct: 349 DQHS-VGMSFEADWRSRGFRPKFNLQQEACKSDGD-ALRRNGYNEMETMQLLSHTHLQSP 406

Query: 411 ASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRI---GNEL 467
           A+    K  EM RY QFRR+GE+ +LH++PPQ +  NYQ     P SS  GRI   G +L
Sbjct: 407 AAL---KPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQ--FPSSSNGGRIAVNGGDL 461

Query: 468 SLSTNDHHQQWQSG-PHMFATAAASSGF-PQQIRSSHSQNWLQNNGFHSLVRPS 519
           SL+TN  HQQWQSG P +FATAAASSGF PQ IR   +Q W Q NGFHSL+RPS
Sbjct: 462 SLATN--HQQWQSGPPQLFATAAASSGFPPQMIRP--NQQWPQKNGFHSLIRPS 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082382|emb|CBI21387.3| unnamed protein product [Vitis vinifera]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/529 (66%), Positives = 398/529 (75%), Gaps = 49/529 (9%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +  +ESE CSSQKTS               NSSSSAVVIE+GSDEE G  
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTS---------------NSSSSAVVIEDGSDEEDG-- 43

Query: 59  ERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPR 118
           ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AFPR
Sbjct: 44  ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAFPR 94

Query: 119 ANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH 175
           A+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH
Sbjct: 95  AHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESH 154

Query: 176 IWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFV 235
           IWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEEFV
Sbjct: 155 IWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFV 214

Query: 236 HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAA 295
           HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+AA
Sbjct: 215 HVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAA 274

Query: 296 VKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMER 355
           +KCNGK+AVTNFDPS+Y++EL +SG+  DHNLDLSLG SAS +Q++ +  +  Q   M++
Sbjct: 275 IKCNGKEAVTNFDPSIYENELNSSGNAADHNLDLSLGGSAS-KQNNLELGDDSQVVTMDQ 333

Query: 356 PAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASSSL 415
            +   +  E DW +RG+RPKQ+   S    L  +R+GY+E ETMQLLS THLQSPA+   
Sbjct: 334 HS-VGMSFEADWRSRGFRPKQEACKSDGDAL--RRNGYNEMETMQLLSHTHLQSPAAL-- 388

Query: 416 NKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRI---GNELSLSTN 472
            K  EM RY QFRR+GE+ +LH++PPQ +  NYQ     P SS  GRI   G +LSL+TN
Sbjct: 389 -KPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQ--FPSSSNGGRIAVNGGDLSLATN 445

Query: 473 DHHQQWQSG-PHMFATAAASSGF-PQQIRSSHSQNWLQNNGFHSLVRPS 519
             HQQWQSG P +FATAAASSGF PQ IR   +Q W Q NGFHSL+RPS
Sbjct: 446 --HQQWQSGPPQLFATAAASSGFPPQMIRP--NQQWPQKNGFHSLIRPS 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096732|ref|XP_002310715.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222853618|gb|EEE91165.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/554 (64%), Positives = 412/554 (74%), Gaps = 55/554 (9%)

Query: 1   MWDLNDSLKDI--EESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MW+LNDS      +ESE CSSQKTSIDG+D+KGK+VGSVSNSSSSAVV E+GS+EE    
Sbjct: 1   MWNLNDSPDQTRDDESEGCSSQKTSIDGEDDKGKRVGSVSNSSSSAVVFEDGSEEEDAVG 60

Query: 59  ERRLLSRSGGSKIFG------------------VCLYQEAMEESEPEPPVTRQFFPVDFQ 100
           E+       G+KI                    V   Q +M+ S+P  PVTRQFFP++ Q
Sbjct: 61  EK-------GNKIIKKRSISFSSSSSSKIFGFSVPYDQYSMDMSDP--PVTRQFFPLEDQ 111

Query: 101 EQQATSSEAGAGGLA------FPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPR 154
           E  +TS   G+ G        FPRA+WVGVKFCQSE  + + KS +E  QPLKKSRRGPR
Sbjct: 112 EMGSTSGGGGSFGGGDGVGGGFPRAHWVGVKFCQSESSLASQKS-MEVSQPLKKSRRGPR 170

Query: 155 SRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
           SRSSQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF
Sbjct: 171 SRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF 230

Query: 215 SIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 274
            IEDYE+DLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct: 231 RIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 290

Query: 275 YVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKAS---GHGVDHNLDLSL 331
           YVYLGLFDTE+EAARAYD+AA+KCNGK+AVTNFDPS+Y++EL ++   G+  DHNLDLSL
Sbjct: 291 YVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSNESPGNAADHNLDLSL 350

Query: 332 GSSASNQQSSADFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRD 391
           G+ AS +Q+S +F        ME+ + A++P E +W NRG RPKQ    +  +D  + RD
Sbjct: 351 GNPAS-KQNSIEFGQDRHNVAMEQHS-ATMPFEPNWQNRGLRPKQLNLCTSDND-GHGRD 407

Query: 392 GYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRRS-GESHLLHMVPPQCNQSNYQT 450
           GY E ET QLLS+ H+QSPAS    KSSEM RYEQFRRS G+S +   +PPQ N  NYQT
Sbjct: 408 GYGETETTQLLSKIHIQSPASL---KSSEMPRYEQFRRSLGDSQMHPFLPPQYNSPNYQT 464

Query: 451 HQLTPGSSKRGRIGNELSLST-----NDHHQQWQSGPHMFATAAASSGFPQQIRSSHSQN 505
               P SS  GRIG++LSLS      N H+QQWQ+GP  FA AAASSGF QQIR+   QN
Sbjct: 465 QH--PSSSNGGRIGSDLSLSPSELHYNHHYQQWQAGPPRFANAAASSGFQQQIRT--PQN 520

Query: 506 WLQNNGFHSLVRPS 519
           WLQ NGF+SL+RPS
Sbjct: 521 WLQKNGFNSLMRPS 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791287|emb|CAN65605.1| hypothetical protein VITISV_042267 [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 312/491 (63%), Positives = 361/491 (73%), Gaps = 51/491 (10%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSS--AVVIENGSDEEIG 56
           MWDLNDS   +  +ESE CSSQKTS+D  D+KGK+VGSVSN +SS  AVVIE+GSDEE G
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDG 60

Query: 57  ASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAF 116
             ER    RS  SKIFG  +      E E EPPVTRQFFP++  E   TS     G  AF
Sbjct: 61  --ERGQRKRS--SKIFGFSV----THEDEGEPPVTRQFFPMEESEMGTTSC---GGAAAF 109

Query: 117 PRANWVGVKFCQSEPIVEAGKSV---IEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 173
           PRA+WVGVKFCQSEP+  AG +    +EA QPLKKSRRGPRSRSSQYRGVTFYRRTGRWE
Sbjct: 110 PRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWE 169

Query: 174 SHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
           SHI                    AYDRAAIKFRG EADINFS+EDYE+DLKQM NLTKEE
Sbjct: 170 SHIC-------------------AYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEE 210

Query: 234 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDR 293
           FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+
Sbjct: 211 FVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDK 270

Query: 294 AAVKCNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVM 353
           AA+KCNGK+AVTNFDPS+Y++EL +SG+  DHNLDLSLG SAS +Q++ +  +  Q   M
Sbjct: 271 AAIKCNGKEAVTNFDPSIYENELNSSGNAADHNLDLSLGGSAS-KQNNLELGDDSQVVTM 329

Query: 354 ERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASS 413
           ++ +   +  E DW +RG+RPKQ+   S    L  +R+GY+E ETMQLLS THLQSPA+ 
Sbjct: 330 DQHS-VGMSFEADWRSRGFRPKQEACKSDGDAL--RRNGYNEMETMQLLSHTHLQSPAAL 386

Query: 414 SLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRI---GNELSLS 470
              K  EM RY QFRR+GE+ +LH++PPQ +  NYQ     P SS  GRI   G +LSL+
Sbjct: 387 ---KPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQ--FPSSSNGGRIAVNGGDLSLA 441

Query: 471 TNDHHQQWQSG 481
           TN  HQQWQSG
Sbjct: 442 TN--HQQWQSG 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342360009|gb|AEL29576.1| APETALA2 [Betula platyphylla]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 347/538 (64%), Positives = 389/538 (72%), Gaps = 40/538 (7%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +  +ESE CSSQKTS DGDD+KGK+VGSVSNSSSSAVVIE+GSD++    
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSFDGDDDKGKRVGSVSNSSSSAVVIEDGSDDDQDGD 60

Query: 59  ERRLLSRS------GGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAG-- 110
             RL  RS        SK+FG        E S P+  VTRQFFP+D  E  ATS   G  
Sbjct: 61  PGRLTKRSTNNNSNSNSKLFGFSF----AENSSPQA-VTRQFFPMDESEAGATSGAGGPT 115

Query: 111 AGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTG 170
           A   AFPRA+WVGVKFCQSE +   GKS  E  QPLKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct: 116 ASAGAFPRAHWVGVKFCQSESL-SPGKS--EVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 172

Query: 171 RWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLT 230
           RWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFSIEDYE+DLKQMSNLT
Sbjct: 173 RWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLT 232

Query: 231 KEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA 290
           KEEFVHVLRRQSTGFPRGSSK+RGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARA
Sbjct: 233 KEEFVHVLRRQSTGFPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEMEAARA 292

Query: 291 YDRAAVKCNGKDAVTNFDPSLYQDELKAS-----GHGVDHNLDLSLGSSASNQQSSA--- 342
           YD+AA+KCNGKDAVTNFDPS+Y++EL ++         DHNLDLSLG+S   Q S A   
Sbjct: 293 YDKAAIKCNGKDAVTNFDPSIYENELNSTESSSGNAAADHNLDLSLGNSIPKQNSLALGN 352

Query: 343 DFANRMQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLL 402
           D             A A +P E DW NRG+RPK+     R     ++RDGYSE+ETMQLL
Sbjct: 353 DITGNAATGQHSAAAAAPMPFEPDWQNRGFRPKE---LCRVDGDAHRRDGYSESETMQLL 409

Query: 403 SQTHLQSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGR 462
           S++HLQSP+S+ +    +     QFRR G++  L    PQ N  NY  H     SS  GR
Sbjct: 410 SRSHLQSPSSNEMQICGQ----GQFRRPGDTQQLPGFLPQINSPNY--HVQYQSSSNGGR 463

Query: 463 IGNELSLSTNDHHQQWQS-GPHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS 519
           IG +LSLS ++  QQWQS  P +FA AAASSGFP QIR    Q W   NGFHSL+RPS
Sbjct: 464 IGGDLSLSMSE--QQWQSVPPQLFAAAAASSGFPPQIRP--PQYWPHTNGFHSLMRPS 517

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106692|dbj|BAJ53193.1| JHL03K20.2 [Jatropha curcas]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 337/551 (61%), Positives = 387/551 (70%), Gaps = 90/551 (16%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDG-DDEKGKQVGSVSNSSSSAVVIENGSDEEIGA 57
           MWDLNDS   +  +ESE CSSQKTS+DG DD KGK+VGSVSNSSSSAVVIE+GS+EE  A
Sbjct: 1   MWDLNDSPDQRRDDESEGCSSQKTSLDGEDDNKGKRVGSVSNSSSSAVVIEDGSEEEDHA 60

Query: 58  SERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFP 117
           S  R   +   SKIFG  + +E   +++   PVTRQFFPV+ QE  ATS  AG+GG  FP
Sbjct: 61  SAERGRIKKRTSKIFGFSVPREDYMDTDA--PVTRQFFPVEDQEMGATS--AGSGGAGFP 116

Query: 118 RANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 177
           RA+WVGVKFCQSE  + + KSV E  QPLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIW
Sbjct: 117 RAHWVGVKFCQSESSLASPKSV-EMSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIW 175

Query: 178 DSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
           D GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINFSIEDYE+DLKQMSNLTKEEFVHV
Sbjct: 176 DCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHV 235

Query: 238 LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVK 297
           LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+AA+K
Sbjct: 236 LRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIK 295

Query: 298 CNGKDAVTNFDPSLYQDELKAS----GHGVDHNLDLSLGSSASNQQSSADFANRMQYTVM 353
           CNGK+AVTNFDPS+Y++EL +S        DHNLDLSLG+SA                 M
Sbjct: 296 CNGKEAVTNFDPSIYENELNSSESSGNVAADHNLDLSLGNSAG----------------M 339

Query: 354 ERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHLQSPASS 413
           ++ +P+     +DW NRG RP +        +   +R+GY E ETMQLLSQTH+QSPA  
Sbjct: 340 DQHSPS-----MDWRNRGIRPPKLNLQRNGENDDRRREGYCETETMQLLSQTHIQSPA-- 392

Query: 414 SLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIGNELSLSTND 473
                +E QR++         +LH   P     +YQ     P SS  GRI + LSL ++D
Sbjct: 393 -----NEPQRFQ---------MLHGFSP-----SYQIQ--FPSSSNGGRIESGLSLCSSD 431

Query: 474 -------------------------HHQQWQSGPHMFATAAASSGFPQQIRSSHSQNWLQ 508
                                    HHQ       + A+AAASSGFPQQIR+   QNWLQ
Sbjct: 432 NQQHQQQQQLPRQWQSGSPASSYSQHHQ-------LVASAAASSGFPQQIRT--PQNWLQ 482

Query: 509 NNGFHSLVRPS 519
            NGFHSL+RPS
Sbjct: 483 KNGFHSLLRPS 493

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21717332|gb|AAL57045.2|AF332215_1 transcription factor AHAP2 [Malus x domestica]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 333/561 (59%), Positives = 386/561 (68%), Gaps = 57/561 (10%)

Query: 1   MWDLNDSLKDI---EESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIE-NGSDEE-- 54
           MWDLNDS       EESE CSSQKTS DGD+EK K+VGSVSNSSSSAVVIE +GSD+E  
Sbjct: 1   MWDLNDSPDQRPRGEESEGCSSQKTSADGDEEKRKRVGSVSNSSSSAVVIEEDGSDQEED 60

Query: 55  --IGASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSE---- 108
              G ++       GG KIFG  +  E   +S+P   VTRQFFPV+     +++ +    
Sbjct: 61  QDDGPTKLAKKQGGGGGKIFGFSVAHEESMDSDPPATVTRQFFPVELDYSSSSNLDVMGP 120

Query: 109 AGAGGLAFP---------RANWVGVKFCQSE--------PIVEAGKSVIEAPQPLKKSRR 151
           A  GG   P         RA+WVGV F QS+        P  EA        QP+KKSRR
Sbjct: 121 AEGGGSIPPPPSTSSSFPRAHWVGVNFGQSDSGSPGNPPPAGEASH------QPMKKSRR 174

Query: 152 GPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD 211
           GPRSR+SQYRGVTFYRRTGRWESHIWD GKQVYLGGFDTAHAAARAYDRAAI+FRG EAD
Sbjct: 175 GPRSRNSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIEFRGVEAD 234

Query: 212 INFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFL 271
           INFSIEDYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFL
Sbjct: 235 INFSIEDYEEDLKQMRNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFL 294

Query: 272 GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKAS-GHGV---DHNL 327
           GK YVYLGLFDTEV+AARAYD+AA+KCNGK+AVTNFDPS+Y +EL +S   GV   DHNL
Sbjct: 295 GKTYVYLGLFDTEVDAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSSESSGVIAADHNL 354

Query: 328 DLSLGSSASNQQSSADFAN--RMQYTVMERPAPASLPNEVDWHNRGYRPKQ--QEAYSRQ 383
           DLSLGS+ S + + A   N    Q   ME     S+  + +W ++G RPK   Q   SR 
Sbjct: 355 DLSLGSTNSKKNNQA-LGNDHHSQNVAMEHQHSVSMQLDANWRSQGLRPKLNIQRDRSRD 413

Query: 384 HDLPYKRDGYSEAETMQLLSQTHLQSPASSSLNKSSEMQRYEQFRR---SGESHLLHMVP 440
                +RDGYSE+E MQLL +T+LQS A       +E+ +Y QF R   +G+  + H  P
Sbjct: 414 DIDAQRRDGYSESEAMQLLLRTNLQSQA------PAEVHKYGQFNRRLTAGDIQMSHNFP 467

Query: 441 PQCNQSNYQTHQLTPGSSKRGRIGNELSLSTNDHHQQWQSGP---HMFATAAASSGFPQQ 497
           P  N  NY   Q    S   GRIG++LSLST+DH QQWQS     ++FATAAASSGFP Q
Sbjct: 468 PNFNSPNYHHIQFPSSSEGGGRIGSDLSLSTSDHQQQWQSATPTSNLFATAAASSGFPPQ 527

Query: 498 IRSSHSQN-WLQNNGFHSLVR 517
           +R   +QN WLQ NGFH+L R
Sbjct: 528 LRPLPTQNSWLQKNGFHTLAR 548

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5081555|gb|AAD39439.1|AF132001_1 PHAP2A protein [Petunia x hybrida]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 324/539 (60%), Positives = 386/539 (71%), Gaps = 40/539 (7%)

Query: 1   MWDLNDSLK-----DIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEI 55
           MWDLNDS       +I+ESE   S    ++ DDEKGK+VGS S SSSSA+ I+  S+EE 
Sbjct: 1   MWDLNDSPDQRREINIDESEEGCSSHIELEPDDEKGKRVGSFSTSSSSAIAIDEISEEED 60

Query: 56  GASERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA 115
           G   ++   RS  SK+FG  +    +   + E P+TRQFFPVD  E +A +     G L 
Sbjct: 61  GEKGKK--KRSSPSKLFGFSM----VGPGDLEQPITRQFFPVD--EAEAETGVVTNGSLN 112

Query: 116 FPRANWVGVKFCQSEP-----IVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTG 170
           FPRA+WVGVKF Q+EP     +V+  +   +  QP+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct: 113 FPRAHWVGVKFYQNEPLGITGVVDVTQQQQQQQQPMKKSRRGPRSRSSQYRGVTFYRRTG 172

Query: 171 RWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLT 230
           RWESHIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF++EDYE DLKQM+NLT
Sbjct: 173 RWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLEDYEGDLKQMTNLT 232

Query: 231 KEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA 290
           KEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA
Sbjct: 233 KEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARA 292

Query: 291 YDRAAVKCNGKDAVTNFDPSLYQDEL---KASGHGVDHNLDLSLGSSASNQQSSADFANR 347
           YD+AA+KCNGKDAVTNFDPS+Y++EL   +++  G DHNLDLSLG S+S + +     NR
Sbjct: 293 YDKAAIKCNGKDAVTNFDPSIYENELNSTESTDSGADHNLDLSLGGSSSKKNNREFGDNR 352

Query: 348 MQYTVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLPYKRDGYSEAETMQLLSQTHL 407
            Q        P+S+  +VDW + G RP++Q A     D   + +GY+E+ET+QLLS+THL
Sbjct: 353 GQ-------NPSSMQFDVDWRHNGLRPEKQTA-PVDMDARRRDNGYNESETLQLLSKTHL 404

Query: 408 QSPASSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGRIG--- 464
            SP S   N S ++QR+ Q+ R GESH++ M PPQ   SNYQ     P  S  GRIG   
Sbjct: 405 HSPVSLKHNNSHQLQRFGQYMRPGESHMIQMFPPQFGSSNYQIQ--FPSGSNGGRIGATN 462

Query: 465 -NELSLSTNDHHQQWQSG--PHMFATAAASSGFPQQIRSSHSQNWLQNNGFHS-LVRPS 519
             +LSLS+++   QWQS   P +FA AAASSGF QQI     QNW   NGFH  L+RPS
Sbjct: 463 VGDLSLSSSNASSQWQSNLPPQIFAAAAASSGFSQQI--VRPQNWSSENGFHHFLMRPS 519

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482811|ref|XP_003611692.1| Transcription factor APETALA2 [Medicago truncatula] gi|355513027|gb|AES94650.1| Transcription factor APETALA2 [Medicago truncatula]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 328/538 (60%), Positives = 392/538 (72%), Gaps = 46/538 (8%)

Query: 1   MWDLNDS--LKDIEESEACSSQKTSIDGDDEKGKQVGSVSNSSSSAVVIENGSDEEIGAS 58
           MWDLNDS   +   ESE CS +   +D D EKGK VGSVSNSSSSA+VIE+GS+EE G  
Sbjct: 1   MWDLNDSPDQRKNYESEGCSMEGDEVDVD-EKGKGVGSVSNSSSSAIVIEDGSEEEDGN- 58

Query: 59  ERRLLSRSGGSKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA--- 115
               +++   SKIFG      +M++S   PPVTRQFFPV+  E   T  ++ +GG     
Sbjct: 59  ----MTKKKSSKIFGF-----SMDDSSDCPPVTRQFFPVEDSETITTVVDSSSGGGGGSS 109

Query: 116 -FPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWES 174
            FPRA+WVGVKFCQSE +   G  ++EA QP+KKSRRGPRSRSSQYRGVTFYRRTGRWES
Sbjct: 110 SFPRAHWVGVKFCQSESV--NGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWES 167

Query: 175 HIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSNLTKEEF 234
           HIWD GKQVYLGGFDTAHAAARAYDRAAIKFRG EADINF+IEDYE+DLKQMSNLTKEEF
Sbjct: 168 HIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEF 227

Query: 235 VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRA 294
           VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTE+EAARAYD+A
Sbjct: 228 VHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKA 287

Query: 295 AVKCNGKDAVTNFDPSLYQDEL--KASGHGVDHNLDLSLGSSASNQQSSAD-FAN-RMQY 350
           A+KCNGK+AVTNFDPS+Y +EL  ++SG+  DHNLDLSLG+S+S   ++   F N     
Sbjct: 288 AIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKCSNNNQAFGNHNTNA 347

Query: 351 TVMERPAPASLPNEVDWHNRGYRPKQQEAYSRQHDLP----YKRDGYSEAETMQLLSQTH 406
           T  +  AP     E +W N G RPK      +   +     + RDGY E ET+++LSQTH
Sbjct: 348 TTDQYMAP-----ESNWRNGGIRPKPVNILPKPCGINNMDGFVRDGYGENETLRMLSQTH 402

Query: 407 LQSPASSSLNKSSEMQRYEQFRRSG-ESH--LLHMVPPQCNQSNYQTHQLTPGSSKRGRI 463
           L   + +    ++EM R+  +R    E H  +LH   P  + SN+    ++  SS  GRI
Sbjct: 403 LHQSSIA----TNEMHRFGPYRSPMIEQHPQMLHNF-PHLHPSNF---HVSSSSSNGGRI 454

Query: 464 GNELSLSTNDHHQQWQSG--PHMFATAAASSGFPQQIRSSHSQNWLQNNGFHSLVRPS 519
           G++L+LS +D  Q+WQ+G  PH+ ATAAASSGFP QIR S SQ WLQ NGFH+L+RPS
Sbjct: 455 GSDLTLSMSD-QQKWQTGPPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS 511

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.485	0.583	0.641	1e-99
TAIR|locus:2155598	352	TOE3 "target of early activati	0.433	0.639	0.634	1e-80
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.348	0.324	0.458	1.9e-37
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.360	0.336	0.416	3.9e-37
TAIR|locus:2082732	346	SMZ "SCHLAFMUTZE" [Arabidopsis	0.302	0.453	0.474	5.1e-37
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.352	0.440	0.42	8e-37
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.346	0.316	0.430	1.3e-36
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.703	0.625	0.280	3.3e-36
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.342	0.310	0.427	3.5e-36
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.300	0.313	0.473	4.4e-36

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
 Identities = 177/276 (64%), Positives = 192/276 (69%)

Query:    88 PPVTRQFFPVDFQEQQATSSEAGAGGLA--FPRANWVGVKFCQSEPIV--EAGKS----- 138
             P VT QFFP           ++  GG+A  FPRA+W GVKFCQS+      AGK+     
Sbjct:    59 PLVTHQFFP---------EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAA 109

Query:   139 -VIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXX 197
              V+E  QPLKK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT       
Sbjct:   110 AVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 169

Query:   198 XXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 257
                  IKFRG EADINF+I+DY+DDLKQM+NLTKEEFVHVLRRQSTGFPRGSSKYRGVTL
Sbjct:   170 YDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 229

Query:   258 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELK 317
             HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYD+AA+KCNGKDAVTNFDPS+Y +EL 
Sbjct:   230 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELN 289

Query:   318 ASGHG-----VDHNLDXXXXXXXXXXXXXXDFANRM 348
             A   G      DHNLD              D   RM
Sbjct:   290 AESSGNPTTPQDHNLDLSLGNSANSKHKSQDMRLRM 325

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
 Identities = 153/241 (63%), Positives = 166/241 (68%)

Query:    89 PVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKK 148
             PVTR FFP       A S E G     F   N VG    +S+P         E   P+KK
Sbjct:    40 PVTRNFFP-------AQSMEPGVRWSGF---NSVG----KSDPSGSGRPEEPEISPPIKK 85

Query:   149 XXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGA 208
                       QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG 
Sbjct:    86 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 145

Query:   209 EADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMG 268
             +ADINF IEDY DDLKQM NLTKEEF+HVLRRQSTGFPRGSSKYRGVTLHKCGRWE+R+G
Sbjct:   146 DADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLG 205

Query:   269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDELKASGHGV--DHN 326
             QFL KKYVYLGLFDTE+EAARAYD+AA+KCNGKDAVTNFDP +Y++E   S       HN
Sbjct:   206 QFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSETTRNGHN 265

Query:   327 L 327
             L
Sbjct:   266 L 266

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 89/194 (45%), Positives = 119/194 (61%)

Query:   138 SVIEA-PQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVYLG 186
             +V EA P P KK           YRGVT +R TGR+E+H+WD+          G+QVYLG
Sbjct:   182 AVSEASPTP-KKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLG 240

Query:   187 GFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFP 246
             G+D             +K+ G     NF I +YE +L++M ++T++EFV  LRR+S+GF 
Sbjct:   241 GYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFS 300

Query:   247 RGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVT 305
             RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G +AVT
Sbjct:   301 RGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVT 360

Query:   306 NFDPSLYQDELKAS 319
             NFD S Y  +  AS
Sbjct:   361 NFDISRYDVKSIAS 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/204 (41%), Positives = 122/204 (59%)

Query:   128 QSEPIVEAGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS-------- 179
             Q + +V   K ++      +K          QYRGVT +R TGR+E+H+WD+        
Sbjct:   257 QEDVVVVGQKQIVH-----RKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHS 311

Query:   180 --GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
               G+QVYLGG+D             +K+ G     NFS E+Y+ +++ M N+T++E+V  
Sbjct:   312 RKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371

Query:   238 LRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAV 296
             LRR+S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+
Sbjct:   372 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAI 431

Query:   297 KCNGKDAVTNFDPSLYQ-DELKAS 319
             K  G +AVTNFD + Y  D + +S
Sbjct:   432 KFRGTNAVTNFDITRYDVDRIMSS 455

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2082732 SMZ "SCHLAFMUTZE" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 85/179 (47%), Positives = 101/179 (56%)

Query:   146 LKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKF 205
             +KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IKF
Sbjct:   109 VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKF 168

Query:   206 RGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEA 265
             RG +ADINF ++DY  D+ +M NL K EFV  LRR+S  F RGSSKY+G+ L KC     
Sbjct:   169 RGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCT---- 224

Query:   266 RMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN--GK-DAVTNFDPSLYQDELKASGH 321
                QF  K +  + LF       R +D AA+K N  GK +    F        +K +GH
Sbjct:   225 ---QF--KTHDQIHLFQN-----RGWDAAAIKYNELGKGEGAMKFGA-----HIKGNGH 268

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 84/200 (42%), Positives = 121/200 (60%)

Query:   130 EPIV--EAGKSVIEAPQPL----KKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS---- 179
             EP+   E  K ++  PQ      +K          QYRGVT +R TGR+E+H+WD+    
Sbjct:   188 EPVKVDEKRKRLVVKPQVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKK 247

Query:   180 ------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEE 233
                   G+QVYLGG+D             +K+ G    +NF + +YE ++++++N+ ++E
Sbjct:   248 EGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQE 307

Query:   234 FVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYD 292
             FV +LRR S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD
Sbjct:   308 FVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 367

Query:   293 RAAVKCNGKDAVTNFDPSLY 312
              AA+K  G +AVTNFD + Y
Sbjct:   368 IAAIKFRGLNAVTNFDINRY 387

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 84/195 (43%), Positives = 122/195 (62%)

Query:   135 AGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVY 184
             +G +++EA  P ++           YRGVT +R TGR+E+H+WD+          G+QVY
Sbjct:   168 SGGAIVEAT-P-RRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVY 225

Query:   185 LGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTG 244
             LGG+D             +K+ G     NF I +YE ++++M N+T++EFV  +RR+S+G
Sbjct:   226 LGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSG 285

Query:   245 FPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDA 303
             F RG+S YRGVT H + GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +A
Sbjct:   286 FSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNA 345

Query:   304 VTNFDPSLYQDELKA 318
             VTNF+ + Y  ++KA
Sbjct:   346 VTNFEINRY--DVKA 358

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 3.3e-36, P = 3.3e-36
 Identities = 111/396 (28%), Positives = 182/396 (45%)

Query:   129 SEPIVEAGKSVIEAPQPL-KKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS-------- 179
             ++ +V+  K++++  +   KK           YRGVT +R TGR+E+H+WD+        
Sbjct:   180 NDDVVQE-KTIVDVVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQT 238

Query:   180 --GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHV 237
               G+QVYLGG+D             +K+ G     NF + +YE ++++M ++T++E+V  
Sbjct:   239 RKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVAS 298

Query:   238 LRRQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAV 296
             LRR+S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+ EAA AYD AA+
Sbjct:   299 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAI 358

Query:   297 KCNGKDAVTNFDPSLYQDELKASGHGVDHNLDXXXXXXXXXXXXXXDFANRMQYTVMERP 356
             K  G  AVTNFD + Y   +KA        L+              D  N +   ++   
Sbjct:   359 KFRGLSAVTNFDMNRYN--VKAI-------LESPSLPIGSSAKRLKDVNNPVPAMMISNN 409

Query:   357 APASLPNEVDWHNRGYRPKQQEAYS---RQHD--LPYKRDGYSEAETMQLLSQTHLQSPA 411
                S  N   W N  ++  Q    S   +Q +  + Y   G    E+ ++  +   +   
Sbjct:   410 VSESANNVSGWQNTAFQHHQGMDLSLLQQQQERYVGYYNGGNLSTESTRVCFKQE-EEQQ 468

Query:   412 SSSLNKSSEMQRYEQFRRSGESHLLHMVPPQCNQSNYQTHQLTPGSSKRGR--IGNELSL 469
                 N  S M   +    + +  +  +     +   YQ   +  G+S         E++ 
Sbjct:   469 HFLRNSPSHMTNVDHHSSTSDDSVT-VCGNVVSYGGYQGFAIPVGTSVNYDPFTAAEIAY 527

Query:   470 STNDHHQQWQSGPHMFATAAASSGFPQQIRSSHSQN 505
             +  +H+   Q         +    FP  I ++HS N
Sbjct:   528 NARNHYYYAQHQQQQQIQQSPGGDFPVAISNNHSSN 563

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 82/192 (42%), Positives = 119/192 (61%)

Query:   138 SVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDS----------GKQVYLGG 187
             +V+E   P ++           YRGVT +R TGR+E+H+WD+          G+QVYLGG
Sbjct:   161 AVVETATP-RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGG 219

Query:   188 FDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPR 247
             +D             +K+ G     NF I +YE ++++M ++T++EFV  +RR+S+GF R
Sbjct:   220 YDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSR 279

Query:   248 GSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTN 306
             G+S YRGVT H + GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTN
Sbjct:   280 GASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTN 339

Query:   307 FDPSLYQDELKA 318
             F+ + Y  ++KA
Sbjct:   340 FEINRY--DVKA 349

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query:   160 YRGVTFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAE 209
             YRGVT +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G+ 
Sbjct:   232 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGST 291

Query:   210 ADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLH-KCGRWEARMG 268
             A  NF +  Y  +L++M+++TK+EF+  LRR+S+GF RG+S YRGVT H + GRW+AR+G
Sbjct:   292 ATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIG 351

Query:   269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDE 315
             +  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y  E
Sbjct:   352 RVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIE 398

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AP2	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (511 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026418001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (750 aa)							•		0.483
	GSVIVG00021344001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (577 aa)							•		0.483
	GSVIVG00001720001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (551 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-26
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	8e-24
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-23
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-22
pfam00847	53	pfam00847, AP2, AP2 domain	6e-10
pfam00847	53	pfam00847, AP2, AP2 domain	3e-08

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  101 bits (255), Expect = 1e-26
 Identities = 33/63 (52%), Positives = 37/63 (58%)

Query: 251 KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS 310
           KYRGV     G+W A +      K V+LG FDT  EAARAYDRAA K  G+ A  NF  S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 311 LYQ 313
           LY 
Sbjct: 61  LYD 63

Length = 64

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 94.3 bits (235), Expect = 8e-24
 Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 159 QYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSI 216
           +YRGV   R  G+W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A +NF  
Sbjct: 1   KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 217 EDYE 220
             Y+
Sbjct: 60  SLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 93.1 bits (232), Expect = 2e-23
 Identities = 32/61 (52%), Positives = 38/61 (62%)

Query: 250 SKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDP 309
           SKYRGV     G+W A +    G + ++LG FDT  EAARAYDRAA+K  G  AV NF  
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 310 S 310
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 158 SQYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
           S+YRGV   R  G+W + I D   G++++LG FDTA  AARAYDRAA+K RG+ A +NF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 158 SQYRGVTFYRRTGRWESHIWDSG----KQVYLGGFDTAHAAARAYDRAAIKFRG 207
           S Y+GV + +R GRW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 250 SKYRGVTLHKC-GRWEA--RMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNG 300
           S Y+GV   K  GRW A  R      KK   LG F TE EAARA   A +K  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.69
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.67
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.66
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.66
PHA00280	121	putative NHN endonuclease	99.44
PHA00280	121	putative NHN endonuclease	99.24
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.05
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.74
cd04518	174	TBP_archaea archaeal TATA box binding protein (TBP	82.89
cd00652	174	TBP_TLF TATA box binding protein (TBP): Present in	81.33

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.69  E-value=4.5e-17  Score=128.82  Aligned_cols=58  Identities=53%  Similarity=0.899  Sum_probs=55.1

Q ss_pred             CCeEEEEEecCCCeEEEEEEeC--CeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCccccc
Q 010040          158 SQYRGVTFYRRTGRWESHIWDS--GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSI  216 (519)
Q Consensus       158 SgYRGV~~~k~~GKW~A~I~~~--gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~  216 (519)
                      |+|+||++++ +|||+|+|+++  +|++|||+|+|+||||+|||.|+++++|..+.+|||.
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            7899999765 49999999999  9999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.67  E-value=1.4e-16  Score=127.53  Aligned_cols=61  Identities=57%  Similarity=0.945  Sum_probs=57.8

Q ss_pred             CeEEEEEecCCCeEEEEEEe--CCeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCccccccccc
Q 010040          159 QYRGVTFYRRTGRWESHIWD--SGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIEDYE  220 (519)
Q Consensus       159 gYRGV~~~k~~GKW~A~I~~--~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~sdYe  220 (519)
                      +|+||++ +++|||+|+|++  .+|+++||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999997 567999999999  899999999999999999999999999999999999999986

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.66  E-value=9.7e-17  Score=128.49  Aligned_cols=63  Identities=52%  Similarity=0.769  Sum_probs=59.3

Q ss_pred             cccCeeeecCcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCcchH
Q 010040          251 KYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQ  313 (519)
Q Consensus       251 kYRGV~~~k~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s~Y~  313 (519)
                      +|+||+++++|+|+|+|+...+++.++||+|+|+||||+|||.|+++++|..+.+|||++.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999988899999997666899999999999999999999999999999999999999985

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.66  E-value=1.6e-16  Score=125.73  Aligned_cols=61  Identities=52%  Similarity=0.797  Sum_probs=56.1

Q ss_pred             CcccCeeeecCcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCc
Q 010040          250 SKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (519)
Q Consensus       250 SkYRGV~~~k~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s  310 (519)
                      |+|+||+++++|||+|+|+....++.++||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999996544489999999999999999999999999999999999864

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.44  E-value=2.7e-13  Score=122.43  Aligned_cols=64  Identities=20%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             ccCCCCCCCCCCCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcccCC
Q 010040          147 KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEAD  211 (519)
Q Consensus       147 kk~rr~~r~~tSgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~  211 (519)
                      .++++.+++++|||+||+|++..+||+|+|+++||+++||.|+++|+|+.||+ ++.+++|.+|+
T Consensus        56 ~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         56 SWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            44556677899999999999999999999999999999999999999999997 77889998874

>PHA00280 putative NHN endonuclease

Probab=99.24  E-value=1.7e-11  Score=110.80  Aligned_cols=104  Identities=16%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhhcccCC---cccc-ccccchhhhhhccccccceeeeecccccCcCCCCCcccCeeeec-CcceEEeec
Q 010040          194 AARAYDRAAIKFRGAEAD---INFS-IEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMG  268 (519)
Q Consensus       194 AArAYD~AAikl~G~~A~---~NFp-~sdYeeELkqL~~LSKEE~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~  268 (519)
                      +-+++..+...++|.-..   +.+. -...+..+..|+.++..|...+.+..    ..++|+|+||++++ .|||+|+| 
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I-   85 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTV-   85 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEE-
Confidence            345667777788885431   2221 12334667888888888888776544    57789999999986 79999999 


Q ss_pred             cccCceeeeccCCCCHHHHHHHHHHHHHHhcCCCCc
Q 010040          269 QFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAV  304 (519)
Q Consensus       269 ~~~~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~  304 (519)
                       .+++|.++||.|+|+|+|+.||+ ++.+++|..|.
T Consensus        86 -~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         86 -TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             -EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence             68999999999999999999997 77889997764

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.05  E-value=3.7e-10  Score=87.35  Aligned_cols=51  Identities=33%  Similarity=0.546  Sum_probs=47.0

Q ss_pred             CCeEEEEEecCCCeEEEEEEeC-----CeEEEeCCCCCHHHHHHHHHHHHHHhhcc
Q 010040          158 SQYRGVTFYRRTGRWESHIWDS-----GKQVYLGGFDTAHAAARAYDRAAIKFRGA  208 (519)
Q Consensus       158 SgYRGV~~~k~~GKW~A~I~~~-----gKri~LGtFdTeEEAArAYD~AAikl~G~  208 (519)
                      |+|+||+|++..++|+|.|++.     +|.++||.|+++++|++||+.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999984     48999999999999999999999998873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.74  E-value=2.3e-08  Score=77.33  Aligned_cols=52  Identities=37%  Similarity=0.554  Sum_probs=44.9

Q ss_pred             CcccCeeeec-CcceEEeecccc-C--ceeeeccCCCCHHHHHHHHHHHHHHhcCC
Q 010040          250 SKYRGVTLHK-CGRWEARMGQFL-G--KKYVYLGLFDTEVEAARAYDRAAVKCNGK  301 (519)
Q Consensus       250 SkYRGV~~~k-~GKW~ArI~~~~-~--~K~v~LGtFdTeEEAArAYD~AAikl~G~  301 (519)
                      |+|+||++++ .++|+|.|+... +  ++.++||.|++++||++||+.+.+++.|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999986 899999996532 1  49999999999999999999999998763

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription

Probab=82.89  E-value=22  Score=34.45  Aligned_cols=135  Identities=16%  Similarity=0.222  Sum_probs=80.5

Q ss_pred             CCCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhcccC----Cccccccccchhhhhhcccccc
Q 010040          157 SSQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAEA----DINFSIEDYEDDLKQMSNLTKE  232 (519)
Q Consensus       157 tSgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A----~~NFp~sdYeeELkqL~~LSKE  232 (519)
                      ..+|.||.++-+.-+=.+.|+..||-+--|. .++++|..|-++.+..+....-    ..+|.....-.....-..+..+
T Consensus        33 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~  111 (174)
T cd04518          33 PDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLD  111 (174)
T ss_pred             CCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHH
Confidence            3688999987777788899999998877775 6788888888887776654221    1222221100000000011111


Q ss_pred             ceeeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHhc
Q 010040          233 EFVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN  299 (519)
Q Consensus       233 E~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl~  299 (519)
                      .+...++ ..   .=...+|-|+.++- .-|=.+-|  +..||-+..|. .+++|+.+|.++-...+.
T Consensus       112 ~la~~~~-~~---~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~  172 (174)
T cd04518         112 AIAIGLP-NA---EYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK  172 (174)
T ss_pred             HHHhhCC-CC---ccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence            1111111 11   11335788988763 44555666  77889888886 568889999888776653

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.

>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription

Probab=81.33  E-value=25  Score=33.92  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             CCeEEEEEecCCCeEEEEEEeCCeEEEeCCCCCHHHHHHHHHHHHHHhhccc--C--Cccccccccchhhhhhccccccc
Q 010040          158 SQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTAHAAARAYDRAAIKFRGAE--A--DINFSIEDYEDDLKQMSNLTKEE  233 (519)
Q Consensus       158 SgYRGV~~~k~~GKW~A~I~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~--A--~~NFp~sdYeeELkqL~~LSKEE  233 (519)
                      .+|.||.++-..-+=.+.|+..||-+--|. .++|+|..|.++.+..+....  .  ..||....-......-..+..++
T Consensus        34 e~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~~  112 (174)
T cd00652          34 KRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEE  112 (174)
T ss_pred             CccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHHH
Confidence            588999987777788899999999877776 467788888888776663321  1  22333211000000000111111


Q ss_pred             eeeeecccccCcCCCCCcccCeeeec-CcceEEeeccccCceeeeccCCCCHHHHHHHHHHHHHHh
Q 010040          234 FVHVLRRQSTGFPRGSSKYRGVTLHK-CGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKC  298 (519)
Q Consensus       234 ~V~aLRRqs~g~~r~sSkYRGV~~~k-~GKW~ArI~~~~~~K~v~LGtFdTeEEAArAYD~AAikl  298 (519)
                      +....+....   =...+|-|+.++- ..+=..-|  +..||-+..|. .+++|+.+|+++-.-.+
T Consensus       113 la~~~~~~~~---YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L  172 (174)
T cd00652         113 LALKHPENAS---YEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL  172 (174)
T ss_pred             HHhhhhcccE---ECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            1111111111   1234688888774 34555566  77888888876 56888999987765443

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-16
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 70.8 bits (174), Expect = 8e-16
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 159 QYRGVTFYRRT-GRWESHIWDSGKQ---VYLGGFDTAHAAARAYDRAAIKFRGAEADINF 214
            YRGV   +R  G++ + I D  K    V+LG F+TA  AA AYDRAA + RG+ A +NF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Query: 215 SIE 217
            + 
Sbjct: 60  PLR 62

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 251 KYRGVTLHKCGRW--EARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNF 307
            YRGV     G++  E R     G + V+LG F+T  +AA AYDRAA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGAR-VWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 37/377 (9%), Positives = 93/377 (24%), Gaps = 108/377 (28%)

Query: 137 KSVIEAPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW---DSGKQVYLGGFDTAHA 193
             +I +   +  + R                         W      +++     +    
Sbjct: 52  DHIIMSKDAVSGTLR-----------------------LFWTLLSKQEEMVQKFVEEVLR 88

Query: 194 AARAYDRAAIKFRGAEADINFSIEDYEDDLKQMSN---------LTKEEFVHVLRRQSTG 244
               Y       +  +   +     Y +   ++ N         +++ +    LR+    
Sbjct: 89  --INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 245 FPRGSSKYRGVTLHKCGRWEARMGQFLGKKY-VYLGLFDTEVEAARAYDRAAV------K 297
                   + V +   G     +    GK +         +V+    +    +       
Sbjct: 147 LRPA----KNVLID--G-----VLGS-GKTWVALDVCLSYKVQCKMDF---KIFWLNLKN 191

Query: 298 CNGKDAVTNFDPSLYQDELKASGHGVDHNLDLSLGSSASNQQSSADFANRMQYTVMERPA 357
           CN  + V      L         + +D N       S++ +         ++  +  +P 
Sbjct: 192 CNSPETVLEMLQKLL--------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 358 PASL--------PNEVDWHNRG------YRPKQ-----QEAYSRQHDLPYKRDGYSEAET 398
              L            +  N         R KQ       A +    L +     +  E 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 399 MQLLS------------QTHLQSPASSSL---NKSSEMQRYEQFRRSGESHLLHMVPPQC 443
             LL             +    +P   S+   +    +  ++ ++      L  ++    
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---- 359

Query: 444 NQSNYQTHQLTPGSSKR 460
            +S+     L P   ++
Sbjct: 360 -ESSLN--VLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.76
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.75
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	94.21
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.23

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.76  E-value=3.7e-19  Score=142.17  Aligned_cols=60  Identities=38%  Similarity=0.592  Sum_probs=55.8

Q ss_pred             cccCeeeecCcceEEeecccc-CceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCc
Q 010040          251 KYRGVTLHKCGRWEARMGQFL-GKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (519)
Q Consensus       251 kYRGV~~~k~GKW~ArI~~~~-~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s  310 (519)
                      +|+||+++++|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999998999999997655 468999999999999999999999999999999999875

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.75  E-value=7e-19  Score=140.57  Aligned_cols=58  Identities=48%  Similarity=0.823  Sum_probs=53.9

Q ss_pred             CeEEEEEecCCCeEEEEEEeC---CeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCcccccc
Q 010040          159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE  217 (519)
Q Consensus       159 gYRGV~~~k~~GKW~A~I~~~---gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~s  217 (519)
                      +||||++ +++|||+|+|+++   ++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999997 4689999999994   78999999999999999999999999999999999953

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=94.21  E-value=0.026  Score=46.77  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=25.5

Q ss_pred             CCCCCeEEEEEecCCCeEEEEEEeCCeEE
Q 010040          155 SRSSQYRGVTFYRRTGRWESHIWDSGKQV  183 (519)
Q Consensus       155 ~~tSgYRGV~~~k~~GKW~A~I~~~gKri  183 (519)
                      ..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            46799999999999999999999998753

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.23  E-value=0.12  Score=47.48  Aligned_cols=88  Identities=9%  Similarity=-0.026  Sum_probs=53.1

Q ss_pred             HHHHHHHHhhcccC---Cccccc-cccchhhhhhccccccceeeeecccccCcCCCCCcccCeeeecCcceEEeeccccC
Q 010040          197 AYDRAAIKFRGAEA---DINFSI-EDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG  272 (519)
Q Consensus       197 AYD~AAikl~G~~A---~~NFp~-sdYeeELkqL~~LSKEE~V~aLRRqs~g~~r~sSkYRGV~~~k~GKW~ArI~~~~~  272 (519)
                      ++...+..|.|...   ..++-- ......+..|+-+|..|......+...    . ..++||.+.+.++|.+.|  ...
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi--~~~  127 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPII--VIS  127 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEE--EEC
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEE--EEc
Confidence            45555666666432   122221 123345677777888777654433321    1 124577653356788888  344


Q ss_pred             ceeeeccCCCCHHHHHHHHH
Q 010040          273 KKYVYLGLFDTEVEAARAYD  292 (519)
Q Consensus       273 ~K~v~LGtFdTeEEAArAYD  292 (519)
                       +..+||.|+|.+|||++|.
T Consensus       128 -~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          128 -PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             -TTSCEEEESCHHHHHHHHT
T ss_pred             -CCceEEeeCCHHHHHHHHC
Confidence             5678999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	5e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-19

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.4 bits (209), Expect = 5e-21
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 159 QYRGVTFYRRTGRWESHIWDS---GKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFS 215
            YRGV   R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG+ A +NF 
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 216 IE 217
           + 
Sbjct: 61  LR 62

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 251 KYRGVTLHKCGRWEARMGQFLGK-KYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNF 307
            YRGV     G++ A +         V+LG F+T  +AA AYDRAA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.79
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.76

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=3e-20  Score=146.94  Aligned_cols=60  Identities=38%  Similarity=0.587  Sum_probs=55.3

Q ss_pred             cccCeeeecCcceEEeeccc-cCceeeeccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCc
Q 010040          251 KYRGVTLHKCGRWEARMGQF-LGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPS  310 (519)
Q Consensus       251 kYRGV~~~k~GKW~ArI~~~-~~~K~v~LGtFdTeEEAArAYD~AAikl~G~~A~tNFp~s  310 (519)
                      +||||+++++|||+|+|+.. .+++++|||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999999899999999754 4668899999999999999999999999999999999875

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=2.4e-19  Score=141.77  Aligned_cols=58  Identities=47%  Similarity=0.788  Sum_probs=53.1

Q ss_pred             CeEEEEEecCCCeEEEEEEe---CCeEEEeCCCCCHHHHHHHHHHHHHHhhcccCCcccccc
Q 010040          159 QYRGVTFYRRTGRWESHIWD---SGKQVYLGGFDTAHAAARAYDRAAIKFRGAEADINFSIE  217 (519)
Q Consensus       159 gYRGV~~~k~~GKW~A~I~~---~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~~NFp~s  217 (519)
                      +||||+++ .+|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999964 67999999996   467899999999999999999999999999999999963