Citrus Sinensis ID: 010110


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MSSGNNSMHGLNNHRFQAKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEccccccEEEEEEEEcccccEEEccccccccccccccccccEEEEEEEEcccccccccEEEEEccccccccccccHHHHHHHHHccEEEEEEEEEEcccccHHcccEEEEEEEEEEEEEcccccEEEEEcccccEEEEcccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHcccccccc
cccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEcccccccccEcEEEEEEEcccccEEEEcccccccEEEEcccccEEEEEEEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHcccEEEEccccEEEEEEccccEEEEEccccccEEEEEEccccEEccccccccHHHHHHHHHHHHHHHHHHHHHcccc
mssgnnsmhglnnhrfqaknsdfvnrhkiethlaptkqkednfisfQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGlladyglwphvtnasaiSNTVKHLYDQLQSQIRTSYDRIRDLtreggtdagagsidtdrhgvpmhtpnaadrpeptdnmprtihddshSEMKNLLHNSQMQQlfnndssqgfsfgsnrenlgnvpnaLDLRvargpeemnawfpsthNEIAssiseggpgiegfqiigeatpgekllgcgypvrgttLCMFQWVRHLQDgtrhyiegatnpeyvvtaddvDKLIAVecipmddqgrqGELVRRFANDqnkikcdlgmQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIieerfpkevsikvpcglstQFVLtfsdgssypfstynvrMRDTLVLTMRMLQGKalddkrkgra
mssgnnsmhglNNHRFQAKNSDFVNRHKIEthlaptkqkednfiSFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTReggtdagagsidtdrhgvpmhtpnaadrpeptdnMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSteaiieerfpkevsikvpCGLSTQFVLTFsdgssypfstynVRMRDTLVLTMRmlqgkalddkrkgra
MSSGNNSMHGLNNHRFQAKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNeiassiseggpgiegFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
****************************************************************IHSLRQQIAVACLKELQLQNEKYTLERKVSELRM*********ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRI******************************************************************************************************WF***************PGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRML*************
*************************************************EAMEL*************LRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEK****************GVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQI**********************************************************************************************************************************GFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK**********
********HGLNNHRFQAKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGK**********
*********************DFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT***G*********************************************************************************************AWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKR****
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MSSGNNSMHGLNNHRFQAKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLxxxxxxxxxxxxxxxxxxxxxGGTDAGAGSIDTDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHSEMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNEIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
297833026519 hypothetical protein ARALYDRAFT_477601 [ 0.951 0.949 0.578 1e-163
145338065521 uncharacterized protein [Arabidopsis tha 0.953 0.948 0.571 1e-161
255566034510 hypothetical protein RCOM_1516730 [Ricin 0.870 0.884 0.597 1e-156
449432366536 PREDICTED: uncharacterized protein LOC10 0.980 0.947 0.527 1e-148
449487556484 PREDICTED: uncharacterized protein LOC10 0.882 0.944 0.550 1e-142
6017097436 hypothetical protein [Arabidopsis thalia 0.727 0.864 0.512 1e-109
242093892525 hypothetical protein SORBIDRAFT_10g02704 0.915 0.902 0.422 1e-104
357123430540 PREDICTED: uncharacterized protein LOC10 0.916 0.879 0.445 1e-102
115454861539 Os03g0707300 [Oryza sativa Japonica Grou 0.924 0.888 0.431 1e-102
356503123607 PREDICTED: uncharacterized protein LOC10 0.438 0.373 0.771 1e-102
>gi|297833026|ref|XP_002884395.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] gi|297330235|gb|EFH60654.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 302/522 (57%), Positives = 377/522 (72%), Gaps = 29/522 (5%)

Query: 19  KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
           ++S+ + RH+IE     +++ ED N    QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct: 5   RSSESIKRHEIEKDTIASRKLEDSNAKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64

Query: 78  KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
           K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEEN KLAHDLKV ED
Sbjct: 65  KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENSKLAHDLKVTED 124

Query: 138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
           ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + +   DRIR+L+      
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184

Query: 198 AGAGSIDTDRHGVPMHTPNAA-----DRPE----------PTDNMPRTIHDDSHSEMKNL 242
            G   I  D H  P ++ + A     DR            P +N+ R  + +   + + L
Sbjct: 185 PGTDFISKDNHD-PRNSKSQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNVMQDTEGL 243

Query: 243 LHNSQMQQLFNNDSSQGFSFGSNRENLG----NVPNALDLRVARGPEEMNAWFPSTHN-- 296
             N+Q+        SQG      REN G    +V     +R      E ++ F + +   
Sbjct: 244 RFNNQI-----GGGSQGIFQQPKRENFGYPLSSVAGKEMIREREEKAESSSMFDAYNGNE 298

Query: 297 EIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA 356
           E AS + E GPGI+GFQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGA
Sbjct: 299 EFASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGA 358

Query: 357 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 416
           T+PEYVVTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD  MQ+EID YISRG
Sbjct: 359 THPEYVVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQAEIDTYISRG 418

Query: 417 HATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFV 476
            A+F+V +LMDSSE+WE AT+IL+RS Y+IK ++TE +I E++ KE+ IKVPCG STQFV
Sbjct: 419 QASFNVQLLMDSSESWETATVILKRSSYQIKTNTTE-VISEKYSKELQIKVPCGFSTQFV 477

Query: 477 LTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA 518
           L   DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR 
Sbjct: 478 LISYDGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGRV 519




Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338065|ref|NP_187006.2| uncharacterized protein [Arabidopsis thaliana] gi|332640436|gb|AEE73957.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255566034|ref|XP_002524005.1| hypothetical protein RCOM_1516730 [Ricinus communis] gi|223536732|gb|EEF38373.1| hypothetical protein RCOM_1516730 [Ricinus communis] Back     alignment and taxonomy information
>gi|449432366|ref|XP_004133970.1| PREDICTED: uncharacterized protein LOC101207305 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487556|ref|XP_004157685.1| PREDICTED: uncharacterized protein LOC101226515 [Cucumis sativus] Back     alignment and taxonomy information
>gi|6017097|gb|AAF01580.1|AC009895_1 hypothetical protein [Arabidopsis thaliana] gi|6091766|gb|AAF03476.1|AC009327_15 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242093892|ref|XP_002437436.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] gi|241915659|gb|EER88803.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357123430|ref|XP_003563413.1| PREDICTED: uncharacterized protein LOC100840800 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|115454861|ref|NP_001051031.1| Os03g0707300 [Oryza sativa Japonica Group] gi|108710674|gb|ABF98469.1| expressed protein [Oryza sativa Japonica Group] gi|113549502|dbj|BAF12945.1| Os03g0707300 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|356503123|ref|XP_003520361.1| PREDICTED: uncharacterized protein LOC100813936 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2096434521 AT3G03560 [Arabidopsis thalian 0.959 0.953 0.555 8.9e-141
TAIR|locus:2154468729 AT5G23490 "AT5G23490" [Arabido 0.391 0.278 0.428 5.2e-64
TAIR|locus:2096434 AT3G03560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 288/518 (55%), Positives = 370/518 (71%)

Query:    19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
             ++S+ + RH+IE     +++ ED N    QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct:     5 RSSESIKRHEIEKDTIASRKLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64

Query:    78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
             K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEENLKLAHDLKV ED
Sbjct:    65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTED 124

Query:   138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
             ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + +   DRIR+L+      
Sbjct:   125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184

Query:   198 AGAGSIDTDRHGVPMHTPNAA-----DRP---EPTDNMPRTIHDDSHSEMKNLLHNSQMQ 249
              G   I  D H  P ++   A     DR    +  + +   + + + +   N++ +++  
Sbjct:   185 PGTDFISKDNHD-PRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTESL 243

Query:   250 QLFNND---SSQGFSFGSNRENLGNVPNAL---DLRVARGPEEMNAWFPSTHNXXXXXXX 303
             + FNN     SQG      REN G   +++   ++   R  +  N+     +N       
Sbjct:   244 R-FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQEREEKAENSSMFDAYNGNEEFAS 302

Query:   304 XXXXXX---XXFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPE 360
                        FQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+PE
Sbjct:   303 HVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPE 362

Query:   361 YVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATF 420
             Y+VTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD  MQ+EID YISRG A+F
Sbjct:   363 YIVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQASF 422

Query:   421 SVLMLMDSSENWEQATLILRRSIYRIKIDSTEAI-IEERFPKEVSIKVPCGLSTQFVLTF 479
             +V +LMDSSE+WE AT++L+RS Y+IK ++TEA+ I E++ KE+ I+VP G STQFVL  
Sbjct:   423 NVQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLIS 482

Query:   480 SDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGR 517
              DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR
Sbjct:   483 YDGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGR 520




GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2154468 AT5G23490 "AT5G23490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh2_kg.3__302__AT3G03560.1
annotation not avaliable (519 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
4dix_A230 Plectin-related protein; PH domain, IG domain, mal 3e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230 Back     alignment and structure
 Score =  144 bits (363), Expect = 3e-40
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 300 SSISEGGPGIEGFQIIGEATPGEKL--LGCGYPVRGTTLCMFQWVR-HLQDGTRHYIEGA 356
           SS          ++I G    G  L    C       + C  QW R       +  I GA
Sbjct: 3   SSSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGA 62

Query: 357 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 416
           T   Y     DV +++  + I        G  +        KI    G+ S ++A + + 
Sbjct: 63  TKSVYAPEPFDVGRVLHADIIY------DGHSLSLSTVG--KIDPAAGLGSYVEALVRKH 114

Query: 417 HATFSVLML-MDSSENWEQATLILRRSIYRIKIDSTEA-IIEERFPKEVSIKVPCGL--- 471
              F+V++  M   ++  ++  +      RIK+   +  I +E +   + +   CG+   
Sbjct: 115 DVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQL---CGVRGG 171

Query: 472 ---STQFVL-TFSDGSSYPFSTYNVRMRDTLVLTMR 503
              + Q +      G S+  +  + R R+  ++  R
Sbjct: 172 GNAAAQALYWQAKKGVSFVIAFESERERNAAIMLAR 207


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
4dix_A230 Plectin-related protein; PH domain, IG domain, mal 99.93
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=99.93  E-value=3.5e-25  Score=211.31  Aligned_cols=187  Identities=20%  Similarity=0.322  Sum_probs=158.8

Q ss_pred             ceeecccCCCcceee--eccccCCceeeeeEEEEEc-cCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCCccce
Q 010110          312 FQIIGEATPGEKLLG--CGYPVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL  388 (518)
Q Consensus       312 l~I~Gda~pG~~L~a--cG~~inGTtlC~FQWvRhl-eDGt~~~IeGA~~p~Y~vTADDVd~liAvec~PmDd~grkGEl  388 (518)
                      +.+-|.-..|.-|+.  |--..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+|      .|+.
T Consensus        15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k   88 (230)
T 4dix_A           15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS   88 (230)
T ss_dssp             EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred             eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence            345566677776654  3222334799999999999 889999999999999999999999999999998      3899


Q ss_pred             eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceEEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 010110          389 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK  466 (518)
Q Consensus       389 Vk~~aNd~~kI~cDpeMq~~I~~~l~~G~Asf~V~ll~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~EKfs~~~~Ik  466 (518)
                      +.+|+|  +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus        89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC  166 (230)
T 4dix_A           89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC  166 (230)
T ss_dssp             EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred             EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence            999999  9999999999999999999999999999955567888 99999999999999985 4499999999987654


Q ss_pred             ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 010110          467 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ  506 (518)
Q Consensus       467 Ip~g--~--~~qfvI~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~  506 (518)
                      =-.|  +  +.-.+-.-.-|..+.|-++..|.|..+++.-|-|-
T Consensus       167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA  210 (230)
T 4dix_A          167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA  210 (230)
T ss_dssp             ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence            3333  2  34455566889999999999999999999999984




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00