Citrus Sinensis ID: 010161
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1S8 | 705 | Probable glutamate carbox | yes | no | 0.963 | 0.704 | 0.610 | 1e-178 | |
| Q9Y3Q0 | 740 | N-acetylated-alpha-linked | yes | no | 0.875 | 0.610 | 0.349 | 1e-70 | |
| Q9CZR2 | 740 | N-acetylated-alpha-linked | yes | no | 0.877 | 0.612 | 0.347 | 1e-68 | |
| P70627 | 752 | Glutamate carboxypeptidas | no | no | 0.858 | 0.589 | 0.350 | 9e-67 | |
| Q04609 | 750 | Glutamate carboxypeptidas | no | no | 0.850 | 0.585 | 0.346 | 3e-66 | |
| O77564 | 751 | Glutamate carboxypeptidas | no | no | 0.841 | 0.577 | 0.336 | 2e-65 | |
| O35409 | 752 | Glutamate carboxypeptidas | no | no | 0.858 | 0.589 | 0.346 | 2e-64 | |
| Q7M758 | 745 | N-acetylated-alpha-linked | no | no | 0.821 | 0.569 | 0.357 | 4e-64 | |
| Q9UQQ1 | 740 | N-acetylated-alpha-linked | no | no | 0.844 | 0.589 | 0.336 | 4e-63 | |
| Q5WN23 | 770 | Glutamate carboxypeptidas | N/A | no | 0.839 | 0.562 | 0.329 | 1e-62 |
| >sp|Q9M1S8|GCP2_ARATH Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 315/516 (61%), Positives = 387/516 (75%), Gaps = 19/516 (3%)
Query: 1 MTHPFT-KLTTTASS----KPPPPLMTFTFLLILCIIGFYTLHHPYPSPATPPL---RNP 52
M+ P T + T T S + PPPL +F F+++L + FYTLHHP TPPL RN
Sbjct: 1 MSQPLTTRPTVTGISIIPFRQPPPLCSFLFVIVLFVATFYTLHHP--DAVTPPLLFSRNA 58
Query: 53 QTALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112
AL ++ FLS +SN T+SSYLR+LT HPHLAGT+PSLDT+ YV +HF+ L TH E
Sbjct: 59 YNALRLRRLFLSSASNATISSYLRELTRHPHLAGTKPSLDTLHYVFNHFQSLGLETHVAE 118
Query: 113 YKALLSYPVHASVSAHFSNGTTVELSLTE-KGISQNAILDVVQPYHAYSPSGSAYGKVVF 171
Y+ALLSYP H SV+A FSN TT+E L + G S VV+PYHAYSPSGSA G VVF
Sbjct: 119 YEALLSYPTHISVTASFSNTTTLEFDLNDVPGDSP-----VVRPYHAYSPSGSAQGNVVF 173
Query: 172 VNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG 231
VN+G E DY ALE+ GV+V GCVV+ARKG L R ++ +AEAKGA+GVL+YAE D
Sbjct: 174 VNHGEERDYHALESIGVSVKGCVVLARKGENLGRGAIVKIAEAKGALGVLIYAENDGGGF 233
Query: 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSL 291
GG+ERGTVMRG+GDP+SPGW GV GGE L L+D V++RFPKIPSLPLS NA+IIL SL
Sbjct: 234 GGIERGTVMRGIGDPVSPGWPGVVGGEKLSLDDELVTRRFPKIPSLPLSLRNAEIILASL 293
Query: 292 WGGFVTQFLNDLGRVN-GGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLL 350
G + GRV G RVGPG ++N+TFQG+ K+ I+NV IRG EE +RYV+L
Sbjct: 294 GGARAPLEWRNSGRVGPGQRVGPGRMVINMTFQGEMKMKKINNVVVTIRGSEEADRYVIL 353
Query: 351 GNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEW 410
GNHRDAWTYGA+DPNSGT+ALLDI+RR+ALL++ GW PRRTI+ CSWDAEEFGMIGSTEW
Sbjct: 354 GNHRDAWTYGAVDPNSGTSALLDISRRFALLLKSGWRPRRTILLCSWDAEEFGMIGSTEW 413
Query: 411 VEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQW 470
+EEN++NLGA AVAYLNVDCAVQG GFFAGATPQLD +L++V K+V+DP++ T+ + +
Sbjct: 414 IEENVLNLGASAVAYLNVDCAVQGSGFFAGATPQLDGLLVDVLKLVQDPDAVGLTVEETF 473
Query: 471 SAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYG 506
+ N I IQRL VDSDF+ F+ HAG+PS+DMYYG
Sbjct: 474 KSQNNI--IQRLSRVDSDFSGFLHHAGIPSIDMYYG 507
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May modulate the level of one or more small signaling molecules that have a role in regulating meristem function. May play a role in balancing and restricting the meristem-promoting activity of auxin signaling. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 7EC: .EC: 2EC: 1 |
| >sp|Q9Y3Q0|NALD2_HUMAN N-acetylated-alpha-linked acidic dipeptidase 2 OS=Homo sapiens GN=NAALAD2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CZR2|NALD2_MOUSE N-acetylated-alpha-linked acidic dipeptidase 2 OS=Mus musculus GN=Naalad2 PE=1 SV=2 | Back alignment and function description |
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| >sp|P70627|FOLH1_RAT Glutamate carboxypeptidase 2 OS=Rattus norvegicus GN=Folh1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q04609|FOLH1_HUMAN Glutamate carboxypeptidase 2 OS=Homo sapiens GN=FOLH1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O77564|FOLH1_PIG Glutamate carboxypeptidase 2 OS=Sus scrofa GN=FOLH1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O35409|FOLH1_MOUSE Glutamate carboxypeptidase 2 OS=Mus musculus GN=Folh1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7M758|NALDL_MOUSE N-acetylated-alpha-linked acidic dipeptidase-like protein OS=Mus musculus GN=Naaladl1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UQQ1|NALDL_HUMAN N-acetylated-alpha-linked acidic dipeptidase-like protein OS=Homo sapiens GN=NAALADL1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5WN23|GCP2_CAEBR Glutamate carboxypeptidase 2 homolog OS=Caenorhabditis briggsae GN=CBG08178 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| 255566257 | 709 | Transferrin receptor protein, putative [ | 0.961 | 0.699 | 0.662 | 0.0 | |
| 297820226 | 705 | hypothetical protein ARALYDRAFT_485877 [ | 0.963 | 0.704 | 0.614 | 1e-178 | |
| 225439311 | 703 | PREDICTED: probable glutamate carboxypep | 0.959 | 0.704 | 0.632 | 1e-177 | |
| 449516159 | 701 | PREDICTED: probable glutamate carboxypep | 0.957 | 0.704 | 0.624 | 1e-176 | |
| 449437892 | 701 | PREDICTED: probable glutamate carboxypep | 0.957 | 0.704 | 0.624 | 1e-176 | |
| 224139956 | 660 | predicted protein [Populus trichocarpa] | 0.860 | 0.672 | 0.695 | 1e-176 | |
| 18410120 | 705 | glutamate carboxypeptidase II [Arabidops | 0.963 | 0.704 | 0.610 | 1e-176 | |
| 15624092 | 705 | glutamate carboxypeptidase [Arabidopsis | 0.963 | 0.704 | 0.610 | 1e-176 | |
| 429535563 | 695 | AMP1-like carboxypeptidase [Lotus japoni | 0.936 | 0.694 | 0.639 | 1e-175 | |
| 7258376 | 703 | Peptidase-like protein [Arabidopsis thal | 0.959 | 0.704 | 0.608 | 1e-173 |
| >gi|255566257|ref|XP_002524116.1| Transferrin receptor protein, putative [Ricinus communis] gi|223536684|gb|EEF38326.1| Transferrin receptor protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/519 (66%), Positives = 405/519 (78%), Gaps = 23/519 (4%)
Query: 1 MTHPFTK--LTTTASSKPPPPLMTFTFLLILCIIGFYTLHHPYPSPATPPLRNPQTALHF 58
M+ P K +++ +S+KPP PL TF F LILCI+ FYTLHHP+ + NP HF
Sbjct: 1 MSSPIVKPTISSPSSAKPPQPLCTFFFFLILCILAFYTLHHPHSNLIH---HNPH---HF 54
Query: 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALLS 118
FLS SSNYT++SYLR LT HPHLAGT PSL T RYV SHF L TH V Y +LLS
Sbjct: 55 HPLFLSSSSNYTLASYLRSLTLHPHLAGTVPSLQTTRYVYSHFTSLNLETHQVNYTSLLS 114
Query: 119 YPVHASVSAHFSNGTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREE 178
YPVHAS+SAH SNG++V SL E + + D+V PYHAYSPSGSA+ KVVFVN+GRE+
Sbjct: 115 YPVHASLSAHLSNGSSVSFSLIET-VGVDVDDDLVHPYHAYSPSGSAHAKVVFVNHGREQ 173
Query: 179 DYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLR-------G 231
DYRAL GV+V+GCVV+ RKG LSR V+ +AE+KGA+ VLLYAE R G
Sbjct: 174 DYRALGLLGVDVTGCVVLVRKGGRLSRGAVVEIAESKGAVAVLLYAERRRSSSSSSSRFG 233
Query: 232 GGVERGTVMRG-VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGS 290
GGVERGTVMRG +GDPLSPGW VEGGE L DS+V +RFPKIPSLPLSFENA +IL S
Sbjct: 234 GGVERGTVMRGGIGDPLSPGWGRVEGGERLGFNDSKVLERFPKIPSLPLSFENADVILRS 293
Query: 291 LWGGFVT--QFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYV 348
L G + ++ + GRV RVGPGPT+VN T+QG+ K ATIH+VFAVIRG EEP+R+V
Sbjct: 294 LGGPIMVSPEWKDYSGRVT--RVGPGPTLVNFTYQGENKEATIHDVFAVIRGSEEPDRFV 351
Query: 349 LLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408
+LGNHRDAWTYGA+DPNSGTAALLDIARRY+LLM++GW PRRTI+ CSWDAEEFGM+GST
Sbjct: 352 ILGNHRDAWTYGAVDPNSGTAALLDIARRYSLLMKMGWKPRRTIVLCSWDAEEFGMVGST 411
Query: 409 EWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTKMVKDPESESGTLYD 468
EWVE+NLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLD+IL+EVTK VKDP+SE T+Y
Sbjct: 412 EWVEQNLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDNILLEVTKKVKDPDSEGATIYQ 471
Query: 469 QWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGK 507
+W+A N+ N RLGGV SDFA F+QHAG+PSVD+YYG+
Sbjct: 472 EWAAKNQATN--RLGGVYSDFAPFLQHAGIPSVDIYYGR 508
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820226|ref|XP_002877996.1| hypothetical protein ARALYDRAFT_485877 [Arabidopsis lyrata subsp. lyrata] gi|297323834|gb|EFH54255.1| hypothetical protein ARALYDRAFT_485877 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|225439311|ref|XP_002267275.1| PREDICTED: probable glutamate carboxypeptidase 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449516159|ref|XP_004165115.1| PREDICTED: probable glutamate carboxypeptidase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449437892|ref|XP_004136724.1| PREDICTED: probable glutamate carboxypeptidase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224139956|ref|XP_002323358.1| predicted protein [Populus trichocarpa] gi|222867988|gb|EEF05119.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|18410120|ref|NP_567007.1| glutamate carboxypeptidase II [Arabidopsis thaliana] gi|332278204|sp|Q9M1S8.3|GCP2_ARATH RecName: Full=Probable glutamate carboxypeptidase 2; AltName: Full=Probable glutamate carboxypeptidase II gi|209529809|gb|ACI49799.1| At3g54720 [Arabidopsis thaliana] gi|332645749|gb|AEE79270.1| glutamate carboxypeptidase II [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15624092|gb|AAL03993.1|AF357217_1 glutamate carboxypeptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|429535563|dbj|BAM72481.1| AMP1-like carboxypeptidase [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|7258376|emb|CAB77592.1| Peptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| TAIR|locus:2102470 | 705 | AMP1 "ALTERED MERISTEM PROGRAM | 0.901 | 0.659 | 0.612 | 7.2e-155 | |
| TAIR|locus:2183229 | 681 | AT5G19740 [Arabidopsis thalian | 0.858 | 0.650 | 0.452 | 2.3e-101 | |
| UNIPROTKB|J3KNJ3 | 707 | NAALAD2 "N-acetylated-alpha-li | 0.346 | 0.253 | 0.455 | 3.3e-66 | |
| UNIPROTKB|C9JFW8 | 705 | NAALADL1 "N-acetylated-alpha-l | 0.889 | 0.651 | 0.313 | 1.6e-54 | |
| UNIPROTKB|F1STP2 | 738 | NAALAD2 "Uncharacterized prote | 0.627 | 0.439 | 0.364 | 3.1e-49 | |
| UNIPROTKB|F1MGS8 | 740 | NAALAD2 "Uncharacterized prote | 0.627 | 0.437 | 0.364 | 1.1e-47 | |
| UNIPROTKB|F1PV69 | 803 | NAALAD2 "Uncharacterized prote | 0.629 | 0.404 | 0.357 | 1.7e-47 | |
| UNIPROTKB|Q9Y3Q0 | 740 | NAALAD2 "N-acetylated-alpha-li | 0.625 | 0.436 | 0.358 | 6.9e-47 | |
| UNIPROTKB|E1C7K6 | 751 | FOLH1 "Uncharacterized protein | 0.629 | 0.432 | 0.354 | 8e-47 | |
| UNIPROTKB|E1C7K7 | 740 | NAALAD2 "Uncharacterized prote | 0.629 | 0.439 | 0.354 | 5.7e-46 |
| TAIR|locus:2102470 AMP1 "ALTERED MERISTEM PROGRAM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 292/477 (61%), Positives = 360/477 (75%)
Query: 34 FYTLHHPYPSPATPPL---RNPQTALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPS 90
FYTLHHP TPPL RN AL ++ FLS +SN T+SSYLR+LT HPHLAGT+PS
Sbjct: 39 FYTLHHP--DAVTPPLLFSRNAYNALRLRRLFLSSASNATISSYLRELTRHPHLAGTKPS 96
Query: 91 LDTVRYVQSHFEQLKFNTHTVEYKALLSYPVHASVSAHFSNGTTVELSLTEKGISQNAIL 150
LDT+ YV +HF+ L TH EY+ALLSYP H SV+A FSN TT+E L + + ++
Sbjct: 97 LDTLHYVFNHFQSLGLETHVAEYEALLSYPTHISVTASFSNTTTLEFDLND--VPGDS-- 152
Query: 151 DVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIF 210
VV+PYHAYSPSGSA G VVFVN+G E DY ALE+ GV+V GCVV+ARKG L R ++
Sbjct: 153 PVVRPYHAYSPSGSAQGNVVFVNHGEERDYHALESIGVSVKGCVVLARKGENLGRGAIVK 212
Query: 211 LAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKR 270
+AEAKGA+GVL+YAE D GG+ERGTVMRG+GDP+SPGW GV GGE L L+D V++R
Sbjct: 213 IAEAKGALGVLIYAENDGGGFGGIERGTVMRGIGDPVSPGWPGVVGGEKLSLDDELVTRR 272
Query: 271 FPKIPSLPLSFENAQIILGSLWGGFVT-QFLNDLXXXXXXXXXXXXTMVNLTFQGKKKVA 329
FPKIPSLPLS NA+IIL SL G ++ N ++N+TFQG+ K+
Sbjct: 273 FPKIPSLPLSLRNAEIILASLGGARAPLEWRNSGRVGPGQRVGPGRMVINMTFQGEMKMK 332
Query: 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPR 389
I+NV IRG EE +RYV+LGNHRDAWTYGA+DPNSGT+ALLDI+RR+ALL++ GW PR
Sbjct: 333 KINNVVVTIRGSEEADRYVILGNHRDAWTYGAVDPNSGTSALLDISRRFALLLKSGWRPR 392
Query: 390 RTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDIL 449
RTI+ CSWDAEEFGMIGSTEW+EEN++NLGA AVAYLNVDCAVQG GFFAGATPQLD +L
Sbjct: 393 RTILLCSWDAEEFGMIGSTEWIEENVLNLGASAVAYLNVDCAVQGSGFFAGATPQLDGLL 452
Query: 450 IEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYG 506
++V K+V+DP++ T+ + + + N I IQRL VDSDF+ F+ HAG+PS+DMYYG
Sbjct: 453 VDVLKLVQDPDAVGLTVEETFKSQNNI--IQRLSRVDSDFSGFLHHAGIPSIDMYYG 507
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| TAIR|locus:2183229 AT5G19740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J3KNJ3 NAALAD2 "N-acetylated-alpha-linked acidic dipeptidase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|C9JFW8 NAALADL1 "N-acetylated-alpha-linked acidic dipeptidase-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1STP2 NAALAD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MGS8 NAALAD2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PV69 NAALAD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y3Q0 NAALAD2 "N-acetylated-alpha-linked acidic dipeptidase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C7K6 FOLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C7K7 NAALAD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M1S8 | GCP2_ARATH | 3, ., 4, ., 1, 7, ., 2, 1 | 0.6104 | 0.9631 | 0.7049 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.17 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 516 | |||
| cd08022 | 286 | cd08022, M28_PSMA_like, M28 Zn-peptidase prostate- | 1e-90 | |
| cd03874 | 279 | cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Trans | 4e-57 | |
| cd02121 | 220 | cd02121, PA_GCPII_like, PA_GCPII_like: Protease-as | 2e-45 | |
| cd09848 | 285 | cd09848, M28_TfR, M28 Zn-peptidase Transferrin Rec | 6e-40 | |
| cd02690 | 252 | cd02690, M28, M28 Zn-peptidases include aminopepti | 2e-25 | |
| cd03877 | 254 | cd03877, M28_like_PA, M28 Zn-Peptidases containing | 2e-22 | |
| pfam04389 | 173 | pfam04389, Peptidase_M28, Peptidase family M28 | 1e-20 | |
| cd08015 | 275 | cd08015, M28_like_4, M28 Zn-Peptidases | 5e-19 | |
| cd02128 | 183 | cd02128, PA_TfR, PA_TfR: Protease-associated domai | 5e-17 | |
| cd05660 | 306 | cd05660, M28_like_PA_1, M28 Zn-Peptidases containi | 5e-17 | |
| cd05663 | 260 | cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptid | 8e-16 | |
| COG2234 | 435 | COG2234, Iap, Predicted aminopeptidases [General f | 2e-13 | |
| cd03883 | 276 | cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl | 3e-11 | |
| cd05662 | 267 | cd05662, M28_like_2, M28 Zn-Peptidases | 4e-10 | |
| cd05661 | 305 | cd05661, M28_like_PA_2, M28 Zn-Peptidases containi | 1e-09 | |
| cd03876 | 288 | cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomy | 2e-09 | |
| cd08022 | 286 | cd08022, M28_PSMA_like, M28 Zn-peptidase prostate- | 3e-08 | |
| cd08021 | 277 | cd08021, M28_like_5, M28 Zn-Peptidase IAP aminopep | 9e-08 | |
| cd05642 | 348 | cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas | 2e-07 | |
| cd03879 | 285 | cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibr | 6e-07 | |
| cd03875 | 307 | cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasm | 1e-05 | |
| cd05640 | 279 | cd05640, M28_like_1, M28 Zn-Peptidases | 1e-04 | |
| cd05675 | 426 | cd05675, M20_yscS_like, M20 Peptidase, carboxypept | 0.001 | |
| cd05643 | 288 | cd05643, M28_like_7, M28 Zn-Peptidases | 0.001 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 0.002 | |
| cd04819 | 127 | cd04819, PA_2, PA_2: Protease-associated (PA) doma | 0.003 |
| >gnl|CDD|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane antigen | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 1e-90
Identities = 97/180 (53%), Positives = 118/180 (65%), Gaps = 2/180 (1%)
Query: 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPR 389
I+NV IRG EEP+ YV+LGNHRDAW +GA DPNSGTA LL++AR L++ GW PR
Sbjct: 57 PIYNVIGTIRGSEEPDEYVILGNHRDAWVFGAGDPNSGTAVLLEVARALGTLLKKGWKPR 116
Query: 390 RTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDIL 449
RTIIF SWDAEE+G+IGSTEWVEEN L +AVAYLNVD AV G A A+P L ++
Sbjct: 117 RTIIFASWDAEEYGLIGSTEWVEENAPWLKERAVAYLNVDVAVSGSTLRASASPLLHKLI 176
Query: 450 IEVTKMVKDPESESGTLYDQWSAPNR-IFNIQRLGGVDSDFASFVQHAGVPSVDMYYGKG 508
E K V DP+ + Y S I LG SD+ F+QH G+PS+D+ YG G
Sbjct: 177 REAAKKVPDPDKGGSSQYLYDSWEKSTDPRIGNLGS-GSDYTVFLQHLGIPSLDLGYGGG 235
|
Peptidase M28 family; prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase II or GCP-II)-like subfamily. PSMA is a homodimeric type II transmembrane protein containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as neovasculature of most solid tumors, but not in the vasculature of the normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. Length = 286 |
| >gnl|CDD|193496 cd03874, M28_PMSA_TfR_like, M28 Zn-peptidase Transferrin Receptor-like family | Back alignment and domain information |
|---|
| >gnl|CDD|239036 cd02121, PA_GCPII_like, PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
| >gnl|CDD|193572 cd09848, M28_TfR, M28 Zn-peptidase Transferrin Receptor family | Back alignment and domain information |
|---|
| >gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases | Back alignment and domain information |
|---|
| >gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain insert | Back alignment and domain information |
|---|
| >gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28 | Back alignment and domain information |
|---|
| >gnl|CDD|193563 cd08015, M28_like_4, M28 Zn-Peptidases | Back alignment and domain information |
|---|
| >gnl|CDD|239043 cd02128, PA_TfR, PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
| >gnl|CDD|193536 cd05660, M28_like_PA_1, M28 Zn-Peptidases containing a PA domain insert | Back alignment and domain information |
|---|
| >gnl|CDD|193539 cd05663, M28_like_PA_PDZ_associated, M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|225143 COG2234, Iap, Predicted aminopeptidases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase | Back alignment and domain information |
|---|
| >gnl|CDD|193538 cd05662, M28_like_2, M28 Zn-Peptidases | Back alignment and domain information |
|---|
| >gnl|CDD|193537 cd05661, M28_like_PA_2, M28 Zn-Peptidases containing a PA domain insert | Back alignment and domain information |
|---|
| >gnl|CDD|193498 cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus Aminopeptidase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane antigen | Back alignment and domain information |
|---|
| >gnl|CDD|193567 cd08021, M28_like_5, M28 Zn-Peptidase IAP aminopeptidase may contain PA domain insert | Back alignment and domain information |
|---|
| >gnl|CDD|193520 cd05642, M28_AAP_like, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase (AAP)-like | Back alignment and domain information |
|---|
| >gnl|CDD|193500 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase | Back alignment and domain information |
|---|
| >gnl|CDD|193497 cd03875, M28_Fxna_like, M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1 | Back alignment and domain information |
|---|
| >gnl|CDD|193519 cd05640, M28_like_1, M28 Zn-Peptidases | Back alignment and domain information |
|---|
| >gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like | Back alignment and domain information |
|---|
| >gnl|CDD|193521 cd05643, M28_like_7, M28 Zn-Peptidases | Back alignment and domain information |
|---|
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
| >gnl|CDD|240123 cd04819, PA_2, PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| KOG2195 | 702 | consensus Transferrin receptor and related protein | 100.0 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 100.0 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 100.0 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 100.0 | |
| PF04389 | 179 | Peptidase_M28: Peptidase family M28; InterPro: IPR | 99.94 | |
| COG4882 | 486 | Predicted aminopeptidase, Iap family [General func | 99.93 | |
| PRK10199 | 346 | alkaline phosphatase isozyme conversion aminopepti | 99.89 | |
| KOG2194 | 834 | consensus Aminopeptidases of the M20 family [Postt | 99.79 | |
| COG2234 | 435 | Iap Predicted aminopeptidases [General function pr | 99.74 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 99.59 | |
| KOG3946 | 338 | consensus Glutaminyl cyclase [Posttranslational mo | 99.39 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 99.36 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 99.31 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 99.3 | |
| PF09940 | 386 | DUF2172: Domain of unknown function (DUF2172); Int | 99.24 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 99.24 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 99.22 | |
| PF05450 | 234 | Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri | 99.18 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.15 | |
| KOG2526 | 555 | consensus Predicted aminopeptidases - M20/M25/M40 | 99.11 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 99.11 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 99.1 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 99.08 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.91 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 98.86 | |
| TIGR03176 | 406 | AllC allantoate amidohydrolase. This enzyme cataly | 98.79 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.79 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.73 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.66 | |
| TIGR01879 | 401 | hydantase amidase, hydantoinase/carbamoylase famil | 98.64 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.6 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.59 | |
| PRK13799 | 591 | unknown domain/N-carbamoyl-L-amino acid hydrolase | 98.55 | |
| PRK13590 | 591 | putative bifunctional OHCU decarboxylase/allantoat | 98.52 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.46 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.45 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.41 | |
| PRK12890 | 414 | allantoate amidohydrolase; Reviewed | 98.39 | |
| PRK12891 | 414 | allantoate amidohydrolase; Reviewed | 98.34 | |
| PF01546 | 189 | Peptidase_M20: Peptidase family M20/M25/M40 This f | 98.32 | |
| PRK09133 | 472 | hypothetical protein; Provisional | 98.25 | |
| PRK12893 | 412 | allantoate amidohydrolase; Reviewed | 98.15 | |
| PRK09290 | 413 | allantoate amidohydrolase; Reviewed | 98.13 | |
| PRK07906 | 426 | hypothetical protein; Provisional | 98.12 | |
| PRK12892 | 412 | allantoate amidohydrolase; Reviewed | 98.11 | |
| PRK06133 | 410 | glutamate carboxypeptidase; Reviewed | 98.07 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.05 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.03 | |
| TIGR01910 | 375 | DapE-ArgE acetylornithine deacetylase or succinyl- | 98.02 | |
| TIGR01883 | 361 | PepT-like peptidase T-like protein. This model rep | 98.02 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.0 | |
| KOG2275 | 420 | consensus Aminoacylase ACY1 and related metalloexo | 98.0 | |
| PRK08596 | 421 | acetylornithine deacetylase; Validated | 97.97 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 97.97 | |
| PRK13983 | 400 | diaminopimelate aminotransferase; Provisional | 97.95 | |
| PRK13381 | 404 | peptidase T; Provisional | 97.83 | |
| PRK09104 | 464 | hypothetical protein; Validated | 97.82 | |
| PRK06837 | 427 | acetylornithine deacetylase; Provisional | 97.82 | |
| TIGR01892 | 364 | AcOrn-deacetyl acetylornithine deacetylase (ArgE). | 97.81 | |
| PRK13013 | 427 | succinyl-diaminopimelate desuccinylase; Reviewed | 97.81 | |
| PRK07907 | 449 | hypothetical protein; Provisional | 97.8 | |
| PRK07473 | 376 | carboxypeptidase; Provisional | 97.76 | |
| TIGR01893 | 477 | aa-his-dipept aminoacyl-histidine dipeptidase. | 97.76 | |
| PRK08262 | 486 | hypothetical protein; Provisional | 97.74 | |
| PRK08588 | 377 | succinyl-diaminopimelate desuccinylase; Reviewed | 97.73 | |
| PRK06915 | 422 | acetylornithine deacetylase; Validated | 97.72 | |
| TIGR01880 | 400 | Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | 97.64 | |
| PRK07338 | 402 | hypothetical protein; Provisional | 97.64 | |
| TIGR01882 | 410 | peptidase-T peptidase T. This model represents a t | 97.63 | |
| PRK09961 | 344 | exoaminopeptidase; Provisional | 97.62 | |
| PRK07522 | 385 | acetylornithine deacetylase; Provisional | 97.59 | |
| PRK07079 | 469 | hypothetical protein; Provisional | 97.58 | |
| PRK05469 | 408 | peptidase T; Provisional | 97.57 | |
| TIGR03107 | 350 | glu_aminopep glutamyl aminopeptidase. This model r | 97.57 | |
| PRK06446 | 436 | hypothetical protein; Provisional | 97.57 | |
| PRK08201 | 456 | hypothetical protein; Provisional | 97.56 | |
| COG4310 | 435 | Uncharacterized protein conserved in bacteria with | 97.5 | |
| TIGR01886 | 466 | dipeptidase dipeptidase PepV. This model represent | 97.48 | |
| PRK13009 | 375 | succinyl-diaminopimelate desuccinylase; Reviewed | 97.46 | |
| COG0624 | 409 | ArgE Acetylornithine deacetylase/Succinyl-diaminop | 97.42 | |
| PRK07318 | 466 | dipeptidase PepV; Reviewed | 97.4 | |
| PRK05111 | 383 | acetylornithine deacetylase; Provisional | 97.4 | |
| PRK08554 | 438 | peptidase; Reviewed | 97.38 | |
| PRK04443 | 348 | acetyl-lysine deacetylase; Provisional | 97.37 | |
| PRK13007 | 352 | succinyl-diaminopimelate desuccinylase; Reviewed | 97.34 | |
| PRK08652 | 347 | acetylornithine deacetylase; Provisional | 97.31 | |
| PRK07205 | 444 | hypothetical protein; Provisional | 97.27 | |
| PRK13004 | 399 | peptidase; Reviewed | 97.24 | |
| COG1363 | 355 | FrvX Cellulase M and related proteins [Carbohydrat | 97.19 | |
| PRK09864 | 356 | putative peptidase; Provisional | 97.18 | |
| PRK08651 | 394 | succinyl-diaminopimelate desuccinylase; Reviewed | 97.17 | |
| PRK06156 | 520 | hypothetical protein; Provisional | 97.16 | |
| TIGR01900 | 373 | dapE-gram_pos succinyl-diaminopimelate desuccinyla | 97.08 | |
| TIGR01887 | 447 | dipeptidaselike dipeptidase, putative. This model | 97.06 | |
| TIGR01902 | 336 | dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d | 96.97 | |
| TIGR01246 | 370 | dapE_proteo succinyl-diaminopimelate desuccinylase | 96.89 | |
| TIGR01891 | 363 | amidohydrolases amidohydrolase. This model represe | 96.88 | |
| PLN02693 | 437 | IAA-amino acid hydrolase | 96.71 | |
| PRK00466 | 346 | acetyl-lysine deacetylase; Validated | 96.71 | |
| PRK15026 | 485 | aminoacyl-histidine dipeptidase; Provisional | 96.59 | |
| COG4187 | 553 | RocB Arginine degradation protein (predicted deacy | 96.53 | |
| KOG2657 | 596 | consensus Transmembrane glycoprotein nicastrin [Si | 96.48 | |
| TIGR03526 | 395 | selenium_YgeY putative selenium metabolism hydrola | 96.33 | |
| PLN02280 | 478 | IAA-amino acid hydrolase | 96.32 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.13 | |
| PRK08737 | 364 | acetylornithine deacetylase; Provisional | 96.05 | |
| TIGR03320 | 395 | ygeY M20/DapE family protein YgeY. Members of this | 95.99 | |
| PRK10199 | 346 | alkaline phosphatase isozyme conversion aminopepti | 95.98 | |
| TIGR03106 | 343 | trio_M42_hydro hydrolase, peptidase M42 family. Th | 95.85 | |
| PF04114 | 504 | Gaa1: Gaa1-like, GPI transamidase component ; Inte | 95.81 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 95.59 | |
| PTZ00371 | 465 | aspartyl aminopeptidase; Provisional | 94.81 | |
| PRK02813 | 428 | putative aminopeptidase 2; Provisional | 93.58 | |
| KOG2276 | 473 | consensus Metalloexopeptidases [Amino acid transpo | 93.23 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.25 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 91.02 | |
| COG1473 | 392 | AbgB Metal-dependent amidase/aminoacylase/carboxyp | 88.67 | |
| KOG3946 | 338 | consensus Glutaminyl cyclase [Posttranslational mo | 82.34 | |
| PRK12893 | 412 | allantoate amidohydrolase; Reviewed | 81.54 |
| >KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=597.91 Aligned_cols=439 Identities=43% Similarity=0.688 Sum_probs=377.2
Q ss_pred HHHHHcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCc-eeeeeeEEEEeeecc---ceEEEEcCCCcE
Q 010161 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEYKALLSYPVH---ASVSAHFSNGTT 134 (516)
Q Consensus 59 ~~~~l~~~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~y~v~~~~p~~---~~l~l~~~~g~~ 134 (516)
...++.+...+++..+++.++..+|.+||..+.+++.++..+|.+.|++ ...-.|++.++||.. ....+...++.+
T Consensus 46 ~~l~~~~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~ 125 (702)
T KOG2195|consen 46 LELAQGELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLE 125 (702)
T ss_pred HHHhhhhccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccce
Confidence 4455556677789999999999999999999999999999999999997 589999999999953 233333445555
Q ss_pred E-EEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhcHHHHHHcCCcccCcEEEEEcCCcccchhHHHHH
Q 010161 135 V-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLA 212 (516)
Q Consensus 135 ~-~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~~k~~~A 212 (516)
+ .....+....+| ...+.+++|.+|++.|.++|++||+|||+.+||..|+..+++++|||+|+|++.++ +|+|+++|
T Consensus 126 i~~s~~~~~~~~Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~-~g~~~~na 204 (702)
T KOG2195|consen 126 IFSSMPHELQVDGDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIY-RGKKVKNA 204 (702)
T ss_pred eeccchhcccCCCcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccc-hhhhHhhH
Confidence 5 344455555566 44677889999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCeEEEEeecCCCcCC----------------Ccceeeceec--cCCCCCCCCCCCCCCCcccccccccccCCCCCC
Q 010161 213 EAKGAIGVLLYAEWDRLRG----------------GGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKI 274 (516)
Q Consensus 213 ~~~GA~gvIi~~dp~~~~~----------------~~v~rg~v~~--~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~~~I 274 (516)
+.+||.|||+|+||.++.. ..+++|+|.. +.|||.||+||+.....|... +......+|+|
T Consensus 205 ~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~~~P~I 283 (702)
T KOG2195|consen 205 EAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSGGLPKI 283 (702)
T ss_pred HHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcCCCCCC
Confidence 9999999999999876543 2478899984 899999999999987777663 22233568999
Q ss_pred ceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCCceE-EE-EEEeeeeeeeeEeEEEEEEcCcCCCCcEEEEee
Q 010161 275 PSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTM-VN-LTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGN 352 (516)
Q Consensus 275 P~~~Is~~~a~~ll~~l~g~~~~~~w~~~~~~~~~~~g~~~~~-v~-l~~~~~~~~~~~~NVi~~i~G~~~~~~~viiga 352 (516)
|++||++++|+.|++.++|...++ ++.+..|+++|++.. .. +.+....+..+++||||+|+|+++||++|||||
T Consensus 284 p~~Pis~~~ae~l~~~~~g~~~~~----~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~Viiga 359 (702)
T KOG2195|consen 284 PSLPISAEDAEILLRLLGGGVKPD----GLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGA 359 (702)
T ss_pred CCcCccchhHHHHHHHhCCCcccc----cccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEec
Confidence 999999999999999998877665 222367888888641 11 122256778999999999999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccc
Q 010161 353 HRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAV 432 (516)
Q Consensus 353 H~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~ 432 (516)
|+|||.+||.|+++|+|+|+|++|.|..+++.||||+|||+|++|+|||+|++||++|+|++...++.++++|||+|+++
T Consensus 360 hrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~ 439 (702)
T KOG2195|consen 360 HRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAV 439 (702)
T ss_pred cccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcccccChhHHHHHHHHHHhcCCCCCCccchhhhccCCCccccccCCCCCCCcHHHHHhcCCCeEEEeeecCCCCc
Q 010161 433 QG-PGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNRIFNIQRLGGVDSDFASFVQHAGVPSVDMYYGKGLAL 511 (516)
Q Consensus 433 ~g-~~l~~~~sP~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~l~~~~~~p~ 511 (516)
.+ .+|.+.++|.|.++++++++.+.+|....++. .+..+ +++|||.+|++++|||++++.|+..||+
T Consensus 440 ~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~-----------~v~~~-g~~Sd~~~F~~~~GIpsv~~~f~~~yP~ 507 (702)
T KOG2195|consen 440 LGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN-----------RVLSL-GGGSDYASFLQFAGIPSVDFAFNRTYPF 507 (702)
T ss_pred cCCceeEEecCccHHHHHHHHHhccCCCCccccce-----------eEecc-CCCCcchhhccccCcceeeeeecCCcce
Confidence 99 89999999999999999999999887643322 12344 6899999999999999999999999999
Q ss_pred Cccc
Q 010161 512 VFYI 515 (516)
Q Consensus 512 YHt~ 515 (516)
|||.
T Consensus 508 yhs~ 511 (702)
T KOG2195|consen 508 YHST 511 (702)
T ss_pred eecc
Confidence 9985
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
| >PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >COG4882 Predicted aminopeptidase, Iap family [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >COG2234 Iap Predicted aminopeptidases [General function prediction only] | Back alignment and domain information |
|---|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
| >KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
| >PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis | Back alignment and domain information |
|---|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
| >PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch | Back alignment and domain information |
|---|
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
| >KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
| >TIGR03176 AllC allantoate amidohydrolase | Back alignment and domain information |
|---|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
| >TIGR01879 hydantase amidase, hydantoinase/carbamoylase family | Back alignment and domain information |
|---|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
| >PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional | Back alignment and domain information |
|---|
| >PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
| >PRK12890 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
| >PRK12891 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
| >PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PRK09133 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12893 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
| >PRK09290 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
| >PRK07906 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12892 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
| >PRK06133 glutamate carboxypeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
| >TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
| >TIGR01883 PepT-like peptidase T-like protein | Back alignment and domain information |
|---|
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
| >KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08596 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PRK13983 diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
| >PRK13381 peptidase T; Provisional | Back alignment and domain information |
|---|
| >PRK09104 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06837 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
| >TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
| >PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
| >PRK07907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07473 carboxypeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase | Back alignment and domain information |
|---|
| >PRK08262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
| >PRK06915 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
| >TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
| >PRK07338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01882 peptidase-T peptidase T | Back alignment and domain information |
|---|
| >PRK09961 exoaminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PRK07522 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK07079 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05469 peptidase T; Provisional | Back alignment and domain information |
|---|
| >TIGR03107 glu_aminopep glutamyl aminopeptidase | Back alignment and domain information |
|---|
| >PRK06446 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08201 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01886 dipeptidase dipeptidase PepV | Back alignment and domain information |
|---|
| >PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
| >COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK07318 dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
| >PRK05111 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK08554 peptidase; Reviewed | Back alignment and domain information |
|---|
| >PRK04443 acetyl-lysine deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
| >PRK08652 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK07205 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13004 peptidase; Reviewed | Back alignment and domain information |
|---|
| >COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09864 putative peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
| >PRK06156 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
| >TIGR01887 dipeptidaselike dipeptidase, putative | Back alignment and domain information |
|---|
| >TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
| >TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
| >TIGR01891 amidohydrolases amidohydrolase | Back alignment and domain information |
|---|
| >PLN02693 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
| >PRK00466 acetyl-lysine deacetylase; Validated | Back alignment and domain information |
|---|
| >PRK15026 aminoacyl-histidine dipeptidase; Provisional | Back alignment and domain information |
|---|
| >COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03526 selenium_YgeY putative selenium metabolism hydrolase | Back alignment and domain information |
|---|
| >PLN02280 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK08737 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
| >TIGR03320 ygeY M20/DapE family protein YgeY | Back alignment and domain information |
|---|
| >PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family | Back alignment and domain information |
|---|
| >PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins | Back alignment and domain information |
|---|
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
| >PTZ00371 aspartyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PRK02813 putative aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
| >KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK12893 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 516 | ||||
| 3fec_A | 707 | Crystal Structure Of Human Glutamate Carboxypeptida | 8e-69 | ||
| 2c6c_A | 707 | Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii | 3e-66 | ||
| 3rbu_A | 739 | N-Terminally Avitev-Tagged Human Glutamate Carboxyp | 3e-66 | ||
| 2oot_A | 709 | A High Resolution Structure Of Ligand-Free Human Gl | 3e-66 | ||
| 2xef_A | 709 | Human Glutamate Carboxypeptidase Ii In Complex With | 3e-66 | ||
| 1z8l_A | 695 | Crystal Structure Of Prostate-Specific Membrane Ant | 6e-66 | ||
| 3bxm_A | 709 | Structure Of An Inactive Mutant Of Human Glutamate | 2e-65 | ||
| 3s9l_A | 654 | Complex Between Transferrin Receptor 1 And Transfer | 3e-37 | ||
| 1de4_C | 640 | Hemochromatosis Protein Hfe Complexed With Transfer | 4e-37 | ||
| 1cx8_A | 639 | Crytal Structure Of The Ectodomain Of Human Transfe | 5e-37 | ||
| 1xjo_A | 284 | Structure Of Aminopeptidase Length = 284 | 1e-08 | ||
| 1cp7_A | 284 | Aminopeptidase From Streptomyces Griseus Length = 2 | 1e-08 | ||
| 3iib_A | 444 | Crystal Structure Of Peptidase M28 Precursor (Yp_92 | 8e-07 | ||
| 3b35_A | 291 | Crystal Structure Of The M180a Mutant Of The Aminop | 5e-05 | ||
| 1rtq_A | 299 | The 0.95 Angstrom Resolution Crystal Structure Of T | 6e-05 | ||
| 1cp6_A | 291 | 1-Butaneboronic Acid Binding To Aeromonas Proteolyt | 6e-05 | ||
| 1igb_A | 291 | Aeromonas Proteolytica Aminopeptidase Complexed Wit | 6e-05 | ||
| 3b3v_A | 291 | Crystal Structure Of The S228a Mutant Of The Aminop | 6e-05 | ||
| 3b3t_A | 291 | Crystal Structure Of The D118n Mutant Of The Aminop | 7e-05 | ||
| 2anp_A | 291 | Functional Glutamate 151 To Histidine Mutant Of The | 3e-04 |
| >pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii (GcpiiiNAALADASE II), PSEUDO-Unliganded Length = 707 | Back alignment and structure |
|
| >pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In Complex With Gpi-18431 (S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid Length = 707 | Back alignment and structure |
| >pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate Carboxypeptidase Ii In Complex With 2-Pmpa Length = 739 | Back alignment and structure |
| >pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate Carboxypeptidase Ii Length = 709 | Back alignment and structure |
| >pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With Antibody-Recruiting Molecule Arm-P8 Length = 709 | Back alignment and structure |
| >pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A Tumor Marker And Peptidase Length = 695 | Back alignment and structure |
| >pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate Carboxypeptidase Ii [gcpii(E424a)] In Complex With N-Acetyl-Asp-Glu (Naag) Length = 709 | Back alignment and structure |
| >pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin With Iron In The N-Lobe, Cryocooled 2 Length = 654 | Back alignment and structure |
| >pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin Receptor Length = 640 | Back alignment and structure |
| >pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin Receptor Length = 639 | Back alignment and structure |
| >pdb|1XJO|A Chain A, Structure Of Aminopeptidase Length = 284 | Back alignment and structure |
| >pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus Length = 284 | Back alignment and structure |
| >pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1) From Shewanella Amazonensis Sb2b At 1.70 A Resolution Length = 444 | Back alignment and structure |
| >pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 | Back alignment and structure |
| >pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The Aminopeptidase From Aeromonas Proteolytica Length = 299 | Back alignment and structure |
| >pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica Aminopeptidase Length = 291 | Back alignment and structure |
| >pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate Length = 291 | Back alignment and structure |
| >pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 | Back alignment and structure |
| >pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The Aminopeptidase From Vibrio Proteolyticus Length = 291 | Back alignment and structure |
| >pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The Aminopeptidase From Aeromonas Proteolytica Length = 291 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Length = 640 | Back alignment and structure |
|---|
Score = 357 bits (917), Expect = e-117
Identities = 120/453 (26%), Positives = 201/453 (44%), Gaps = 32/453 (7%)
Query: 62 FLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKF-NTHTVEYKALLSYP 120
L + + L + ++ P AG++ + YV++ F + K ++ +
Sbjct: 14 KLDSTDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVK 73
Query: 121 VHASVSAHFSNGTTVELSLTEKGISQNAILDVVQPYHAYSPSGSAYGKVVFVNYGREEDY 180
A S + + L E Y AYS + + GK+V N+G ++D+
Sbjct: 74 DSAQNSVIIVDKNGRLVYLVEN----------PGGYVAYSKAATVTGKLVHANFGTKKDF 123
Query: 181 RALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV- 239
L V+G +V+ R G + + + + AE+ AIGVL+Y + + E
Sbjct: 124 EDL---YTPVNGSIVIVRAGKI-TFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFG 179
Query: 240 --MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVT 297
G GDP +PG+ + S P IP +S A+ + G++ G +
Sbjct: 180 HAHLGTGDPYTPGFPSFNHTQFPPSRSS----GLPNIPVQTISRAAAEKLFGNMEGDCPS 235
Query: 298 QFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAW 357
+ D V V LT K I N+F VI+G EP+ YV++G RDAW
Sbjct: 236 DWKTDSTC---RMVTSESKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAW 292
Query: 358 TYGAIDPNSGTAALLDIARRYA-LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLV 416
GA GTA LL +A+ ++ ++++ G+ P R+IIF SW A +FG +G+TEW+E L
Sbjct: 293 GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLS 352
Query: 417 NLGAKAVAYLNVDCAV-QGPGFFAGATPQLDDILIEVTKMVKDPESESGTLYDQWSAPNR 475
+L KA Y+N+D AV F A+P L ++ + + VK P + D A
Sbjct: 353 SLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASK- 411
Query: 476 IFNIQRLGGVDSDFASFVQHAGVPSVDMYYGKG 508
+D+ F+ ++G+P+V + +
Sbjct: 412 ----VEKLTLDNAAFPFLAYSGIPAVSFCFCED 440
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Length = 707 | Back alignment and structure |
|---|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 | Back alignment and structure |
|---|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 | Back alignment and structure |
|---|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Length = 444 | Back alignment and structure |
|---|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Length = 329 | Back alignment and structure |
|---|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330 | Back alignment and structure |
|---|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Length = 314 | Back alignment and structure |
|---|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Length = 309 | Back alignment and structure |
|---|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 100.0 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 100.0 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 100.0 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 100.0 | |
| 4fuu_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase li | 99.97 | |
| 4fai_A | 330 | CG5976, isoform B; alpha/beta hydrolase, PGlu form | 99.96 | |
| 4f9u_A | 312 | CG32412; alpha/beta hydrolase, PGlu formation, PE, | 99.96 | |
| 2afw_A | 329 | Glutaminyl-peptide cyclotransferase; alpha-beta pr | 99.94 | |
| 3pb6_X | 330 | Glutaminyl-peptide cyclotransferase-like protein; | 99.94 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 99.92 | |
| 3gux_A | 314 | Putative Zn-dependent exopeptidase; aminopeptidase | 99.92 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 99.9 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 99.88 | |
| 3k9t_A | 435 | Putative peptidase; structural genomics, joint cen | 99.84 | |
| 4h2k_A | 269 | Succinyl-diaminopimelate desuccinylase; DAPE, MCSG | 99.17 | |
| 3t68_A | 268 | Succinyl-diaminopimelate desuccinylase; DAPE, csgi | 99.13 | |
| 1y0y_A | 353 | FRV operon protein FRVX; aminopeptidase, PDZ, hydr | 99.01 | |
| 2gre_A | 349 | Deblocking aminopeptidase; structural genomi prote | 99.01 | |
| 2wyr_A | 332 | Cobalt-activated peptidase TET1; hydrolase, large | 98.95 | |
| 1vhe_A | 373 | Aminopeptidase/glucanase homolog; structural genom | 98.93 | |
| 2fvg_A | 340 | Endoglucanase; TM1049, structural genomics, joint | 98.91 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.9 | |
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 98.67 | |
| 3n5f_A | 408 | L-carbamoylase, N-carbamoyl-L-amino acid hydrolase | 98.57 | |
| 2zog_A | 479 | Cytosolic non-specific dipeptidase; metallopeptida | 98.38 | |
| 2pok_A | 481 | Peptidase, M20/M25/M40 family; M20 family peptidas | 98.35 | |
| 3kl9_A | 355 | PEPA, glutamyl aminopeptidase; tetrahedral aminope | 98.35 | |
| 1cg2_A | 393 | Carboxypeptidase G2; metallocarboxypeptidase, hydr | 98.34 | |
| 3dlj_A | 485 | Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti | 98.34 | |
| 3ct9_A | 356 | Acetylornithine deacetylase; NP_812461.1, A putati | 98.29 | |
| 1ylo_A | 348 | Hypothetical protein SF2450; structural genomics, | 98.28 | |
| 1z2l_A | 423 | Allantoate amidohydrolase; ALLC, purine cataboli a | 98.22 | |
| 3pfo_A | 433 | Putative acetylornithine deacetylase; metal bindin | 98.18 | |
| 2v8h_A | 474 | Beta-alanine synthase; amidohydrolase, alpha and b | 98.18 | |
| 1vho_A | 346 | Endoglucanase; structural genomics, unknown functi | 98.13 | |
| 3gb0_A | 373 | Peptidase T; NP_980509.1, aminopeptidase PEPT, pep | 98.12 | |
| 3tx8_A | 369 | Succinyl-diaminopimelate desuccinylase; peptidase, | 98.08 | |
| 2rb7_A | 364 | Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat | 98.04 | |
| 3cpx_A | 321 | Aminopeptidase, M42 family; YP_676701.1, putative | 98.0 | |
| 3ife_A | 434 | Peptidase T; metallopeptidase, aminopeptidase, hyd | 97.97 | |
| 1vgy_A | 393 | Succinyl-diaminopimelate desuccinylase; structural | 97.96 | |
| 3rza_A | 396 | Tripeptidase; phosphorylase/hydrolase-like, struct | 97.95 | |
| 3pfe_A | 472 | Succinyl-diaminopimelate desuccinylase; metal bind | 97.95 | |
| 1xmb_A | 418 | IAA-amino acid hydrolase homolog 2; structural gen | 97.87 | |
| 3khx_A | 492 | Putative dipeptidase sacol1801; DAPE, metallopepti | 97.8 | |
| 2f7v_A | 369 | Aectylcitrulline deacetylase; alpha/beta, hydrolas | 97.79 | |
| 1ysj_A | 404 | Protein YXEP; M20 family peptidase, dinuclear meta | 97.74 | |
| 3isz_A | 377 | Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b | 97.74 | |
| 1lfw_A | 470 | PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac | 97.7 | |
| 1fno_A | 417 | Peptidase T; metallo peptidase, protease, hydrolas | 97.64 | |
| 3mru_A | 490 | Aminoacyl-histidine dipeptidase; metalloprotease, | 97.48 | |
| 3io1_A | 445 | Aminobenzoyl-glutamate utilization protein; peptid | 97.44 | |
| 3ram_A | 394 | HMRA protein; two-domain, catalytic (alpha-beta-al | 97.43 | |
| 2qyv_A | 487 | XAA-His dipeptidase; YP_718209.1, structural genom | 97.4 | |
| 2vpu_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 97.01 | |
| 3isx_A | 343 | Endoglucanase; TM1050, structural genomics, joint | 96.87 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 96.52 | |
| 3gux_A | 314 | Putative Zn-dependent exopeptidase; aminopeptidase | 96.46 | |
| 4fai_A | 330 | CG5976, isoform B; alpha/beta hydrolase, PGlu form | 95.98 | |
| 4f9u_A | 312 | CG32412; alpha/beta hydrolase, PGlu formation, PE, | 95.94 | |
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 95.93 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 95.75 | |
| 3pb6_X | 330 | Glutaminyl-peptide cyclotransferase-like protein; | 95.21 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 95.05 | |
| 2afw_A | 329 | Glutaminyl-peptide cyclotransferase; alpha-beta pr | 94.09 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 93.49 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 92.77 | |
| 2ijz_A | 428 | Probable M18-family aminopeptidase 2; putative ami | 92.01 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 90.51 | |
| 2glj_A | 461 | Probable M18-family aminopeptidase 1; aminopeptida | 89.36 | |
| 3vat_A | 496 | Dnpep, aspartyl aminopeptidase; alpha-beta-alpha s | 89.02 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 87.72 | |
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 85.71 |
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-86 Score=734.25 Aligned_cols=456 Identities=37% Similarity=0.654 Sum_probs=402.4
Q ss_pred ChHHHHHHHHcccChHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHCCCc-eeeeeeEEEEeeecc---ceEEEEc
Q 010161 54 TALHFQKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEYKALLSYPVH---ASVSAHF 129 (516)
Q Consensus 54 ~~~~~~~~~l~~~~~~~i~~~L~~Ls~~~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~y~v~~~~p~~---~~l~l~~ 129 (516)
+.+++++.+++.++.++|++||++||+.||+|||+++.++|+||+++|+++||+ +++++|+++++||.. .+++|++
T Consensus 10 ~~~~l~~~~~~~~~~~~i~~~l~~lt~~ph~aGt~~~~~~a~yi~~~~~~~Gl~~v~~~~y~v~l~~P~~~~~~~l~l~~ 89 (707)
T 3fed_A 10 YHQSIRWKLVSEMKAENIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHYDVLLSYPNETNANYISIVD 89 (707)
T ss_dssp ---CHHHHHHHHCCHHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEEEEEEEEEEECCTTSCCEEEEEC
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhcCCCcCCCHhHHHHHHHHHHHHHHcCCCceeEEeeeEEeecccCCCCceEEEEc
Confidence 345778899999999999999999999999999999999999999999999999 899999999999975 4789998
Q ss_pred CCCcEE-EEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhcHHHHHHc-CCcccCcEEEEEcCCcccch
Q 010161 130 SNGTTV-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAA-GVNVSGCVVMARKGSVLSRS 206 (516)
Q Consensus 130 ~~g~~~-~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~~~-gv~v~GkIvlv~~g~~~~~~ 206 (516)
++|+.+ ...+.|+.++++ ...+.+++|++||++|+++|+|||||||+.+||+.|++. |++++|||||++||.++ ++
T Consensus 90 ~~g~~~~~~~l~e~~~~~~~~~~~~~~~f~ays~~G~v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~-~~ 168 (707)
T 3fed_A 90 EHETEIFKTSYLEPPPDGYENVTNIVPPYNAFSAQGMPEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIF-RG 168 (707)
T ss_dssp TTSCEEEECC---CCCTTCTTCCCCCCSCCTTCCCBCCEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSC-HH
T ss_pred CCCceeeeccccccCCccccccccccccccccCCCCceEEEEEEecCCchhhHHHHHhccCCCCCCeEEEEECCCCC-Hh
Confidence 888765 677777766655 456778899999999999999999999999999999985 99999999999999998 99
Q ss_pred hHHHHHHHcCCeEEEEeecCCCc--------------CCCcceeeceec--cCCCCCCCCCCCCCCCcccccccccccCC
Q 010161 207 GVIFLAEAKGAIGVLLYAEWDRL--------------RGGGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKR 270 (516)
Q Consensus 207 ~k~~~A~~~GA~gvIi~~dp~~~--------------~~~~v~rg~v~~--~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~ 270 (516)
+|+++|+++||+|||||+||.|+ +.+++|||+|+. ++|||+||||||+++++|++..+. ..
T Consensus 169 ~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~---~~ 245 (707)
T 3fed_A 169 NKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEG---VG 245 (707)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGC---TT
T ss_pred HHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhc---cC
Confidence 99999999999999999987542 125789999974 689999999999999999886652 36
Q ss_pred CCCCceeecCHHHHHHHHHhcCCCCcccc-ccccCccCCCccCCCc------eEEEEEEeeeeeeeeEeEEEEEEcCcCC
Q 010161 271 FPKIPSLPLSFENAQIILGSLWGGFVTQF-LNDLGRVNGGRVGPGP------TMVNLTFQGKKKVATIHNVFAVIRGLEE 343 (516)
Q Consensus 271 ~~~IP~~~Is~~~a~~ll~~l~g~~~~~~-w~~~~~~~~~~~g~~~------~~v~l~~~~~~~~~~~~NVi~~i~G~~~ 343 (516)
+|+||++|||+++|++|++.|+|..+|.. |+++++ +.|++||+. .+++|++++..+..+++||||+|+|++.
T Consensus 246 ~p~IP~~pIS~~da~~Ll~~l~g~~~p~~~W~g~~~-~~y~~gp~~~g~~~~~~v~l~v~~~~~~~~~~NVi~~i~G~~~ 324 (707)
T 3fed_A 246 IPRIPVHPIGYNDAEILLRYLGGIAPPDKSWKGALN-VSYSIGPGFTGSDSFRKVRMHVYNINKITRIYNVVGTIRGSVE 324 (707)
T ss_dssp CCSSCEEEECHHHHHHHHHTBCBSCCSSGGGCCSSS-SCCCCBSSBCCC-CCCEEEEEBCCEEEEEEEEEEEEEECCSSE
T ss_pred CCCCCeEecCHHHHHHHHHHhcCCCCcccccccCcC-cceecccccCCCCCceeEEEEEEEEEEEEEEEEEEEEEeCCCC
Confidence 89999999999999999999998777766 999985 679888863 4788888888888999999999999976
Q ss_pred CCcEEEEeecCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEE
Q 010161 344 PNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAV 423 (516)
Q Consensus 344 ~~~~viigaH~Ds~~~Ga~D~~sG~a~lle~ar~l~~~~~~g~~p~r~i~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~ 423 (516)
++++||||||+|||..||.||++|+|+|||+||.|+++.+.||+|+|+|+|++|+|||.|++||++|++++...+.++++
T Consensus 325 ~~~~vllgaH~Ds~~~Ga~D~~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE~Gl~GS~~~~~~~~~~~~~~~~ 404 (707)
T 3fed_A 325 PDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENVKILQERSI 404 (707)
T ss_dssp EEEEEEEEEECCCSSSCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHHHHHHHHHHHHEE
T ss_pred CCceEEEeccccCCCCCCccCcHHHHHHHHHHHHHHhhhhccCCCCCCEEEEEeCCccccchhHHHHHHhcchhhhhCEE
Confidence 78999999999999999999999999999999999999888999999999999999999999999999999877778999
Q ss_pred EEEEecccccC-CCcccccChhHHHHHHHHHHhcCCCCC--CccchhhhccCCCc------cccccCCCCCCCcHHHHHh
Q 010161 424 AYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPES--ESGTLYDQWSAPNR------IFNIQRLGGVDSDFASFVQ 494 (516)
Q Consensus 424 a~inlD~~~~g-~~l~~~~sP~l~~l~~~~~~~v~~p~~--~~~~l~~~~~~~~~------~~~~~~~~~~~SD~~~F~~ 494 (516)
+|||+||++.| ..|.+.++|.+.++++++++.+.+|.. ...++|+.|.+..+ .+.+..+ +++|||.||++
T Consensus 405 a~iNlD~~~~g~~~~~~~~sp~l~~~i~~~~~~v~~P~~~~~~~tly~~w~~~~~~~~~~~~p~i~~l-gsgSD~~~F~~ 483 (707)
T 3fed_A 405 AYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKL-GSGSDFEAYFQ 483 (707)
T ss_dssp EEEECSCSBSCSSEEEEEECGGGHHHHHHHHTTSBCCSTTCTTSBHHHHHHHHSEETTEEEEECEECC-CSSSTTHHHHH
T ss_pred EEEEecccccCCceEEEecCHHHHHHHHHHHhcCCCCccccccccHHHHHHhhcccccccCCcccccC-CCCCChHHHHH
Confidence 99999999998 578899999999999999999999974 35899999987431 1123344 68999999999
Q ss_pred cCCCeEEEeeecC--------CCCcCccc
Q 010161 495 HAGVPSVDMYYGK--------GLALVFYI 515 (516)
Q Consensus 495 ~~GIPs~~l~~~~--------~~p~YHt~ 515 (516)
++|||+++|.|.. .||+|||.
T Consensus 484 ~~GIPs~~~~f~~~~~~~~~~~y~~YHT~ 512 (707)
T 3fed_A 484 RLGIASGRARYTKNKKTDKYSSYPVYHTI 512 (707)
T ss_dssp TTCCCEEEEEEECCTTTCCSSSCTTTTST
T ss_pred hCCcceeccccccCccccccCCCCCcCCC
Confidence 9999999999962 57899996
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
| >4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* | Back alignment and structure |
|---|
| >4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* | Back alignment and structure |
|---|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... | Back alignment and structure |
|---|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* | Back alignment and structure |
|---|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
| >3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
| >4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} | Back alignment and structure |
|---|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A | Back alignment and structure |
|---|
| >1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A | Back alignment and structure |
|---|
| >2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A | Back alignment and structure |
|---|
| >1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
| >3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* | Back alignment and structure |
|---|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A | Back alignment and structure |
|---|
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A | Back alignment and structure |
|---|
| >1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} | Back alignment and structure |
|---|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A | Back alignment and structure |
|---|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A | Back alignment and structure |
|---|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A | Back alignment and structure |
|---|
| >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A | Back alignment and structure |
|---|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A | Back alignment and structure |
|---|
| >3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} | Back alignment and structure |
|---|
| >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
| >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
| >4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* | Back alignment and structure |
|---|
| >4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* | Back alignment and structure |
|---|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* | Back alignment and structure |
|---|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... | Back alignment and structure |
|---|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
| >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
| >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
| >3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A* | Back alignment and structure |
|---|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 516 | ||||
| d3bi1a3 | 304 | c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep | 1e-44 | |
| d1de4c3 | 294 | c.56.5.5 (C:122-189,C:383-608) Transferrin recepto | 7e-43 | |
| d3bi1a2 | 233 | c.8.4.1 (A:118-350) Glutamate carboxypeptidase II | 2e-39 | |
| d1de4c2 | 193 | c.8.4.1 (C:190-382) Transferrin receptor ectodomai | 3e-32 | |
| d2afwa1 | 329 | c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransf | 1e-20 | |
| d1rtqa_ | 291 | c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti | 4e-17 | |
| d1tkja1 | 277 | c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr | 2e-08 | |
| d1z2la1 | 293 | c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro | 3e-07 | |
| d1r3na1 | 322 | c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta- | 5e-06 |
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (397), Expect = 1e-44
Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 25/250 (10%)
Query: 269 KRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQGKKKV 328
F +IP L + +N Q+ + + G ++ + +V
Sbjct: 19 YNFTQIPHLAGTEQNFQLA------KQIQSQWKEFG---------LDSVELAHYDVLLEV 63
Query: 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSP 388
I+NV +RG EP+RYV+LG HRD+W +G IDP SG A + +I R + L + GW P
Sbjct: 64 TRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKEGWRP 123
Query: 389 RRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGP-GFFAGATPQLDD 447
RRTI+F SWDAEEFG++GSTEW EEN L + VAY+N D +++G TP +
Sbjct: 124 RRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYS 183
Query: 448 ILIEVTKMVKDPES--ESGTLYDQWSA------PNRIFNIQRLGGVDSDFASFVQHAGVP 499
++ +TK +K P+ E +LY+ W+ + + I +LG +DF F Q G+
Sbjct: 184 LVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKLGS-GNDFEVFFQRLGIA 242
Query: 500 SVDMYYGKGL 509
S Y K
Sbjct: 243 SGRARYTKNW 252
|
| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Length = 233 | Back information, alignment and structure |
|---|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Length = 329 | Back information, alignment and structure |
|---|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 | Back information, alignment and structure |
|---|
| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277 | Back information, alignment and structure |
|---|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 | Back information, alignment and structure |
|---|
| >d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 100.0 | |
| d1de4c3 | 294 | Transferrin receptor ectodomain, protease-like dom | 100.0 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 100.0 | |
| d3bi1a3 | 304 | Glutamate carboxypeptidase II FOLH1 {Human (Homo s | 100.0 | |
| d2afwa1 | 329 | Glutaminyl-peptide cyclotransferase, QPCT {Human ( | 99.96 | |
| d1tkja1 | 277 | Aminopeptidase {Streptomyces griseus [TaxId: 1911] | 99.96 | |
| d1rtqa_ | 291 | Aminopeptidase {Aeromonas proteolytica [TaxId: 671 | 99.96 | |
| d1vhoa2 | 248 | Putative endoglucanase TM1048, catalytic domain {T | 99.6 | |
| d1yloa2 | 264 | Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 | 99.56 | |
| d2fvga2 | 255 | Endoglucanase TM1049 {Thermotoga maritima [TaxId: | 99.35 | |
| d1vhea2 | 275 | Hypothetical protein YsdC, catalytic domain {Bacil | 99.27 | |
| d1z2la1 | 293 | Allantoate amidohydrolase AllC catalytic domain {E | 99.15 | |
| d1cg2a1 | 276 | Carboxypeptidase G2, catalytic domain {Pseudomonas | 99.13 | |
| d2grea2 | 233 | Deblocking aminopeptidase YhfE {Bacillus cereus [T | 99.02 | |
| d1fnoa4 | 295 | Peptidase T (tripeptidase), catalytic domain {Salm | 98.94 | |
| d1r3na1 | 322 | Peptidase-like beta-alanine synthase, catalytic do | 98.8 | |
| g1q7l.1 | 280 | Aminoacylase-1, catalytic domain {Human (Homo sapi | 98.72 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 98.15 | |
| d1lfwa1 | 272 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 98.14 | |
| d1vgya1 | 262 | Succinyl-diaminopimelate desuccinylase, catalytic | 97.76 | |
| d3bi1a3 | 304 | Glutamate carboxypeptidase II FOLH1 {Human (Homo s | 97.09 | |
| d1rtqa_ | 291 | Aminopeptidase {Aeromonas proteolytica [TaxId: 671 | 96.98 | |
| d1tkja1 | 277 | Aminopeptidase {Streptomyces griseus [TaxId: 1911] | 96.95 | |
| d1de4c3 | 294 | Transferrin receptor ectodomain, protease-like dom | 96.62 | |
| d1ysja1 | 261 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 95.09 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 94.9 | |
| d2afwa1 | 329 | Glutaminyl-peptide cyclotransferase, QPCT {Human ( | 94.74 | |
| d1xmba1 | 273 | IAA-amino acid hydrolase, catalytic domain {Mouse- | 94.51 | |
| d1z2la1 | 293 | Allantoate amidohydrolase AllC catalytic domain {E | 92.3 | |
| g1q7l.1 | 280 | Aminoacylase-1, catalytic domain {Human (Homo sapi | 80.65 |
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=330.09 Aligned_cols=203 Identities=34% Similarity=0.568 Sum_probs=177.0
Q ss_pred eeecc---ceEEEEcCCCcEE-EEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhcHHHHH-HcCCccc
Q 010161 118 SYPVH---ASVSAHFSNGTTV-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALE-AAGVNVS 191 (516)
Q Consensus 118 ~~p~~---~~l~l~~~~g~~~-~~~l~e~~~~~~-~~~~~~~~~~a~s~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~ 191 (516)
+||.. .+|+|++++|+++ +..+.|..++++ ...+.+++|++||++|+|+|+|||||||+.+||++|+ +.|++++
T Consensus 1 SYP~~~~pn~v~l~~~~G~~~~~~~l~E~~~~~~~~~~~~~p~f~ays~~G~v~g~~VyvnyG~~~Df~~L~~~~gi~~~ 80 (233)
T d3bi1a2 1 SYPNKTHPNYISIINEDGNEIFNTSLFEPPPPGYENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMKINCS 80 (233)
T ss_dssp EECCTTSCCEEEEECTTSCEEEECCSSCCCCTTCTTCCCCCCSCEETCCCBCCEECEEECTTCCHHHHHHHHHTSCCCCT
T ss_pred CCCCCCCCCEEEEEeCCCCEEEeecccccCCccccccccccccceeeCCCCceeEEEEEecCCcHHHHHHHHHhcCCccc
Confidence 57753 4799999999876 888888876655 5677889999999999999999999999999999997 4799999
Q ss_pred CcEEEEEcCCcccchhHHHHHHHcCCeEEEEeecCCCc--------------CCCcceeeceec--cCCCCCCCCCCCCC
Q 010161 192 GCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRL--------------RGGGVERGTVMR--GVGDPLSPGWAGVE 255 (516)
Q Consensus 192 GkIvlv~~g~~~~~~~k~~~A~~~GA~gvIi~~dp~~~--------------~~~~v~rg~v~~--~~Gdp~tP~~~s~~ 255 (516)
|||||+|||+++ +++|+++|+++||+|||||+||.|+ +.+++|||++.. +.|||+||+||+.+
T Consensus 81 gkIvl~ryG~~~-~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~yP~~~~~p~~~vqrgsv~~~~~~GDplTPg~ps~~ 159 (233)
T d3bi1a2 81 GKIVIARYGKVF-RGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANE 159 (233)
T ss_dssp TCEEEEECCSSC-HHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTSSSBCCTTCCCCEECCCCTTCCSTTCTTSCCCT
T ss_pred ceEEEEeCCCCc-hhHHHHHHHHcCceEEEEecChHHccCcccccccCCccCCCCceeEeeeeecCCCCCCCCCCCCCCC
Confidence 999999999999 9999999999999999999998552 127899999954 68999999999999
Q ss_pred CCcccccccccccCCCCCCceeecCHHHHHHHHHhcCCCCcc-ccccccCccCCCccCCCce------EEEEEEeee
Q 010161 256 GGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVT-QFLNDLGRVNGGRVGPGPT------MVNLTFQGK 325 (516)
Q Consensus 256 ~~~r~~~~~~~~~~~~~~IP~~~Is~~~a~~ll~~l~g~~~~-~~w~~~~~~~~~~~g~~~~------~v~l~~~~~ 325 (516)
+.+|++..+. ..+|+||++|||+++|++||+.|+|..+| ..|+++++ ..|++||++. +|+|+|+++
T Consensus 160 ~~~r~~~~~~---~~lP~IP~~PIS~~dA~~lL~~L~G~~~p~~~W~G~l~-~~Y~~Gpg~~~~~s~~kv~l~V~n~ 232 (233)
T d3bi1a2 160 YAYRRGIAEA---VGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLK-VPYNVGPGFTGNFSTQKVKMHIHST 232 (233)
T ss_dssp TCCCCCGGGC---SSCCSSCEEEECHHHHHHHHTTBCBBCCSSGGGCCSSS-SCCCCBSSBCGGGTTCEEEEEBCCE
T ss_pred CCcccChhHh---cCCCCCceeccCHHHHHHHHHHcCCCCCCchhccCCCC-CceecCCCccCCCCCCeEEEEEecC
Confidence 9999986543 46899999999999999999999999888 68999986 7899999753 788877653
|
| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
|---|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} | Back information, alignment and structure |
|---|
| >d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
| >d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
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| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
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| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} | Back information, alignment and structure |
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| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
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| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
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| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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