Citrus Sinensis ID: 010185
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LT15 | 514 | Sugar transport protein 1 | yes | no | 0.957 | 0.961 | 0.698 | 0.0 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.949 | 0.947 | 0.697 | 0.0 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.963 | 0.966 | 0.689 | 0.0 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.988 | 0.992 | 0.647 | 0.0 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.968 | 0.956 | 0.639 | 0.0 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.968 | 0.957 | 0.624 | 0.0 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.967 | 0.982 | 0.625 | 1e-178 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.992 | 0.973 | 0.564 | 1e-177 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.963 | 0.974 | 0.603 | 1e-173 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.961 | 0.966 | 0.569 | 1e-173 |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function desciption |
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Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/495 (69%), Positives = 421/495 (85%), Gaps = 1/495 (0%)
Query: 19 VTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFD 78
VT+FV++TC+VAAMGGLLFGYDLGISGGVTSM++FL FFP+V + H++AYCKFD
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 79 SQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLII 138
+Q+L LFTSSLYLAALVASF ASV+TR +GRK+SM +GG++FLIGA+ N AVN++MLII
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 139 GRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG 198
GRL+LGVGVGFANQ PVYLSEMAPAK+RGALNIGFQMAITIGIL+ANL+NYGT+K++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200
Query: 199 WGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDL 258
GWRVSL LAAVPA++M +GSF LPDTPNS+LERG +EAK+ML+KIRG NVD EFQDL
Sbjct: 201 -GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDL 259
Query: 259 YDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAE 318
DA EAAK+V +PW NI+ +YRP L C+ IPFFQQ TGINVIMFYAPVLFKT+GFG +
Sbjct: 260 IDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDD 319
Query: 319 ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378
A+LMSAVITGVVN+++T VS+++VD++GRR+LFLEGG+QMFICQ LVG + +FG G
Sbjct: 320 AALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGT 379
Query: 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFV 438
GTLT AD++L IC YVA FAWSWGPLGWLVPSE+C LEIR AGQAINVS NM FTF+
Sbjct: 380 GTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFL 439
Query: 439 VGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMWKAHWFWGKYI 498
+GQ FL+MLCH KFGLF+FFA VA+MTVF+++++PET+ VPIEEM R+WK HWFW KYI
Sbjct: 440 IGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKYI 499
Query: 499 PDEAVIGSSNEIQPN 513
P++A+IG ++ N
Sbjct: 500 PEDAIIGGHDDNNTN 514
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/492 (69%), Positives = 414/492 (84%), Gaps = 2/492 (0%)
Query: 19 VTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFD 78
VT FV++TC+VAAMGGLLFGYDLGISGGVTSM++FL FFP+V ++ E+AYCKFD
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 79 SQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLII 138
+QLL LFTSSLYLAAL +SF AS VTR YGRK+SM VGG++FLIG++ N A N+AMLI+
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 139 GRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG 198
GRL+LGVGVGFANQ PVYLSEMAPAK+RGALNIGFQMAITIGILIANL+NYGT++++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 199 WGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDL 258
GWRVSL LAAVPA++M +GSF LPDTPNS+LERG ++A++MLQKIRG NVDEEFQDL
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDL 259
Query: 259 YDASEAAKQVHHPWTNILR-GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGA 317
DA EAAK+V +PW NI + +YRP L C+ IPFFQQ TGINVIMFYAPVLFKT+GF
Sbjct: 260 CDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFAD 319
Query: 318 EASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377
+ASL+SAVITG VNVV+TLVS+++VD++GRR+LFLEGG+QM + Q +VG ++ +KFG G
Sbjct: 320 DASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTG 379
Query: 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTF 437
GTLT AD++L IC YVA FAWSWGPLGWLVPSE+C LEIR AGQAINVS NM FTF
Sbjct: 380 SGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTF 439
Query: 438 VVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMWKAHWFWGKY 497
++GQ FL+MLCH KFGLF+FF G VAVMTVF+++++PET+ VPIEEM R+WK H FW +Y
Sbjct: 440 LIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRY 499
Query: 498 IPDEAVIGSSNE 509
+PD+AVIG E
Sbjct: 500 MPDDAVIGGGEE 511
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
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Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/499 (68%), Positives = 417/499 (83%), Gaps = 2/499 (0%)
Query: 1 MAGGGVVVQGG-AKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFP 59
MAGG + + G +YEG VT+FV++TC+VAAMGGLLFGYD+GISGGV SM+ FL FFP
Sbjct: 1 MAGGAFIDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFP 60
Query: 60 KVYRKQLNK-GHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGI 118
V R+ NK G E+ YCK+D++LLTLFTSSLYLAAL ASF AS +TR++GRK+SM +G +
Sbjct: 61 DVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSL 120
Query: 119 SFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAI 178
+FL GA++NG A+N+ MLIIGRL LGVGVGFANQ VP+YLSEMAPAK+RGALNIGFQ+AI
Sbjct: 121 AFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAI 180
Query: 179 TIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEA 238
TIGIL AN+VNY T K+ G GWR+SL LA VPA++M VG FFLPDTPNSILERG+ ++A
Sbjct: 181 TIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKA 240
Query: 239 KKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTG 298
K+MLQKIRGT V+ EF +L +A EAAK+V HPWTNI++ RYRPQLT CT IPFFQQ TG
Sbjct: 241 KEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTG 300
Query: 299 INVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQM 358
INVIMFYAPVLFKTIGFG +ASL+SAVITG+VNV++T+VS++SVDKFGRR LFL+GG QM
Sbjct: 301 INVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQM 360
Query: 359 FICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL 418
+ Q VG M+ KFG GEG L+ DAD +L LIC YVA FAWSWGPLGWLVPSE+C L
Sbjct: 361 IVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPL 420
Query: 419 EIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRN 478
EIRSAGQ++NVS NM FTF +GQ FL+MLCH KFGLF+FFAG V +MT+F+++++PET+
Sbjct: 421 EIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKG 480
Query: 479 VPIEEMNRMWKAHWFWGKY 497
VPIEEM ++WK H +WGKY
Sbjct: 481 VPIEEMGKVWKEHRYWGKY 499
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/511 (64%), Positives = 413/511 (80%), Gaps = 1/511 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGG V G +NY +T V VTC + A GGL+FGYDLGISGGVTSM+ FL++FFP
Sbjct: 1 MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VY+K + HE+ YC+FDSQLLTLFTSSLY+AALV+S FAS +TR++GRK SM +GG +F
Sbjct: 61 VYKK-MKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
IG+ NG A NIAML+IGR++LG GVGFANQ VPVYLSEMAP +RGA N GFQ+AI
Sbjct: 120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIF 179
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GI++A ++NY TA++ G GWR+SL LA VPA+++ +G+ LPDTPNS++ERG+ +EAK+
Sbjct: 180 GIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKE 239
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
MLQ IRGT VDEEFQDL DASE +KQV HPW NI+ RYRPQL M IPFFQQ TGIN
Sbjct: 240 MLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGIN 299
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VI FYAPVLF+T+GFG++ASL+SA++TG++ ++ T VSVF+VD+FGRR+LFL+GG+QM +
Sbjct: 300 VITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLV 359
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
Q +G M+ +KFG+ G G + K DA+ ++ LIC YVA FAWSWGPLGWLVPSE+ LEI
Sbjct: 360 SQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEI 419
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480
RSA QAINVS NM FTF+V Q+FL+MLCH KFGLFFFFA FV +MT+F++ M+PET+NVP
Sbjct: 420 RSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVP 479
Query: 481 IEEMNRMWKAHWFWGKYIPDEAVIGSSNEIQ 511
IEEMNR+WKAHWFWGK+IPDEAV + E+Q
Sbjct: 480 IEEMNRVWKAHWFWGKFIPDEAVNMGAAEMQ 510
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/502 (63%), Positives = 398/502 (79%), Gaps = 2/502 (0%)
Query: 2 AGGGVVVQGGAKN-YEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
A GG+ GG + Y G +T +V VTC+VAAMGGL+FGYD+GISGGVTSMD FLK FFP
Sbjct: 3 AVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPS 62
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VYRK+ + YC++DSQ LT+FTSSLYLAAL+AS AS +TR +GRK+SM GG+ F
Sbjct: 63 VYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLF 122
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
GAIINGAA + MLI+GR++LG G+GFANQ VP+YLSEMAP K RGALNIGFQ++ITI
Sbjct: 123 CAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 182
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL+AN++NY AKI GGWGWR+SL A VPA+++TVGS LPDTPNS++ERG +EA+
Sbjct: 183 GILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEARA 242
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
L+++RG +VDEEF DL ASE +K+V HPW N+L+ +YRP L+M IPFFQQ TGIN
Sbjct: 243 HLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGIN 302
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLF TIGFG++A+LMSAVITG+VNV AT+VS++ VDK+GRR LFLEGGVQM I
Sbjct: 303 VIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLI 362
Query: 361 CQCLVGIMLALKFGLRG-EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
CQ +V + KFG+ G G L ++ A V+ IC YV+ FAWSWGPLGWLVPSE+ LE
Sbjct: 363 CQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLE 422
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IRSA Q++NVS NM FTFVV QVFL MLCH KFGLF FF+ FV +M++FV+Y +PET+ +
Sbjct: 423 IRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGI 482
Query: 480 PIEEMNRMWKAHWFWGKYIPDE 501
PIEEM ++WK HW+W +Y+ DE
Sbjct: 483 PIEEMGQVWKQHWYWSRYVVDE 504
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Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/501 (62%), Positives = 389/501 (77%), Gaps = 1/501 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
M GG VV G K Y G +T FVL TC+VAAMGGL+FGYD+GISGGVTSM FLK FFP
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VYRKQ + YC++DS LT+FTSSLYLAAL++S AS VTR +GR++SM GGI F
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
GA+ING A ++ MLI+GR++LG G+GFANQ VP+YLSEMAP K RGALNIGFQ++ITI
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL+A ++NY AKI GGWGWR+SL A VPA+++T+GS LPDTPNS++ERG +EAK
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
L++IRG +V +EF DL AS+ ++ + HPW N+LR +YRP LTM +IPFFQQ TGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLF TIGF +ASLMSAV+TG VNV ATLVS++ VD++GRR LFLEGG QM I
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLI 360
Query: 361 CQCLVGIMLALKFGLRG-EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
CQ +V + KFG+ G G L K+ A V+ IC YVA FAWSWGPLGWLVPSE+ LE
Sbjct: 361 CQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLE 420
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IRSA Q+I VS NMIFTF++ Q+FL+MLCH KFGLF FA FV VM++FV+ +PET+ +
Sbjct: 421 IRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGI 480
Query: 480 PIEEMNRMWKAHWFWGKYIPD 500
PIEEM ++W++HW+W +++ D
Sbjct: 481 PIEEMGQVWRSHWYWSRFVED 501
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1608), Expect = e-178, Method: Compositional matrix adjust.
Identities = 314/502 (62%), Positives = 388/502 (77%), Gaps = 3/502 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
M G+V+ G K Y G +T +V VTC+VAAMGGL+FGYD+GISGGVT+MD F + FFP
Sbjct: 1 MPSVGIVIGDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPS 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VY KQ + YC+FDS LTLFTSSLYLAAL +S AS VTR +GRK+SM +GG+ F
Sbjct: 61 VYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLF 120
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
GA++NG A + MLI+GRL+LG G+GF NQ VP+YLSEMAP K RGALNIGFQ++ITI
Sbjct: 121 CAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL+AN++N+ +KIS WGWR+SL A VPA+++TVGS LPDTPNS++ERG A+
Sbjct: 181 GILVANVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEA 238
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
L+KIRG ++D+E DL ASEA+K V HPW N+L+ +YRP LTM LIP FQQ TGIN
Sbjct: 239 KLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAILIPAFQQLTGIN 298
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLF+TIGFG++A+L+SAV+TG+VNV AT+VS++ VDK+GRR LFLEGG QM I
Sbjct: 299 VIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLI 358
Query: 361 CQCLVGIMLALKFGLRG-EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
Q V + KFG+ G G L K+ A V+ IC YVAAFAWSWGPLGWLVPSE+ LE
Sbjct: 359 SQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLE 418
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IRSA Q+I VS NMIFTF++ QVFL MLCH KFGLF FFA FV VM++FV+ +PETR V
Sbjct: 419 IRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPETRGV 478
Query: 480 PIEEMNRMWKAHWFWGKYIPDE 501
PIEEMNR+W++HW+W K++ E
Sbjct: 479 PIEEMNRVWRSHWYWSKFVDAE 500
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 622 bits (1604), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/524 (56%), Positives = 388/524 (74%), Gaps = 12/524 (2%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
M GGG +E +T V+++C++AA GGL+FGYD+G+SGGVTSM FL+ FFP
Sbjct: 1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60
Query: 61 VYRKQL-NKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS 119
VYRK + +S YCK+D+Q L LFTSSLYLA L A+FFAS TR GR+++M + G+
Sbjct: 61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120
Query: 120 FLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179
F+IG +N A ++AMLI GR++LG GVGFANQ VP++LSE+AP ++RG LNI FQ+ +T
Sbjct: 121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
Query: 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAK 239
IGIL ANLVNYGTAKI GGWGWR+SL LA +PA+L+TVG+ + +TPNS++ERG +DE K
Sbjct: 181 IGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGK 240
Query: 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGI 299
+L++IRGT NV+ EF DL +AS AK+V HP+ N+L+ R RPQL + + FQQ TGI
Sbjct: 241 AVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGI 300
Query: 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMF 359
N IMFYAPVLF T+GFG++ASL SAV+TG VNV++TLVS++SVDK GRRVL LE GVQMF
Sbjct: 301 NAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMF 360
Query: 360 ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
Q ++ I+L +K L+K A V+ +IC YVAAFAWSWGPLGWL+PSE LE
Sbjct: 361 FSQVVIAIILGVKV-TDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLE 419
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
RSAGQ++ V N++FTF++ Q FLSMLCHFKFG+F FF+ +V +M+VFV +++PET+N+
Sbjct: 420 TRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNI 479
Query: 480 PIEEM-NRMWKAHWFWGKYIPD---------EAVIGSSNEIQPN 513
PIEEM R+WK HWFW +++ D E G SN P+
Sbjct: 480 PIEEMTERVWKKHWFWARFMDDHNDHEFVNGEKSNGKSNGFDPS 523
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 609 bits (1571), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/502 (60%), Positives = 380/502 (75%), Gaps = 5/502 (0%)
Query: 2 AGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKV 61
AG + +GG Y G +TSFV ++C++AAMGG++FGYD+G+SGGVTSMD FLK FFP V
Sbjct: 3 AGLAITSEGG--QYNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDV 60
Query: 62 YRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFL 121
YRK S YCKFDSQLLT FTSSLY+A LVASFFAS VTR +GRK S+ +GG FL
Sbjct: 61 YRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFL 120
Query: 122 IGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIG 181
A + GAAVN+ MLI GR++LGVGVGFANQ VP+YLSEMAP + RGA+N GFQ ++ IG
Sbjct: 121 AXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIG 180
Query: 182 ILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDE-AKK 240
L ANL+NYGT KI GGWGWR+SLA+AAVPA ++T G+ FLP+TPNS+++R + E AK
Sbjct: 181 ALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKL 240
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
MLQ++RGT +V E DL AS ++ + HP+ NI+R +YRPQL M IPFFQQ TGIN
Sbjct: 241 MLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGIN 300
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VI FYAP+LF+TIG ASL+S+++TG+V +T +S+ VDK GRR LF+ GGVQMF+
Sbjct: 301 VIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFV 360
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
Q +VG ++A + G G + K A VL LIC YVA F WSWGPLGWLVPSE+ LEI
Sbjct: 361 AQIMVGSIMAAELG--DHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEI 418
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480
RSAGQ+I V+ + +FTFVV Q FLSMLCHFK G+FFFF G+V VMT FV +++PET+ VP
Sbjct: 419 RSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVP 478
Query: 481 IEEMNRMWKAHWFWGKYIPDEA 502
IE+M+ +W+ HWFW K I +EA
Sbjct: 479 IEKMDIVWRDHWFWKKIIGEEA 500
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/504 (56%), Positives = 380/504 (75%), Gaps = 8/504 (1%)
Query: 1 MAGGGV----VVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKD 56
MAGG V + A+ Y+G VTS+V++ CLVAA+GG +FGYD+GISGGVTSMD+FL++
Sbjct: 1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEE 60
Query: 57 FFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVG 116
FF VY K+ + HES YCK+D+Q L FTSSLYLA LV++ AS +TR YGR+ S+ G
Sbjct: 61 FFHTVYEKK-KQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCG 119
Query: 117 GISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQM 176
GISFLIG+ +N AVN+AML+ GR+MLGVG+GF NQ VP+YLSE+AP +RG LN+ FQ+
Sbjct: 120 GISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQL 179
Query: 177 AITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVD 236
A TIGI AN+VNYGT ++ WGWR+SL LAA PA+LMT+G +FLP+TPNS++ERG +
Sbjct: 180 ATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTE 238
Query: 237 EAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQF 296
+++L K+RGT NV+ E QD+ DASE A + HP+ NIL+ R+RPQL M +P FQ
Sbjct: 239 RGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQIL 298
Query: 297 TGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGV 356
TGIN I+FYAPVLF+T+GFG ASL S+ +TG V V++T +S+ VD+ GRR L + GG+
Sbjct: 299 TGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGI 358
Query: 357 QMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVC 416
QM ICQ +V ++L +KFG E L+K + V+ IC +V AF WSWGPLGW +PSE+
Sbjct: 359 QMIICQVIVAVILGVKFGDNQE--LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIF 416
Query: 417 ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPET 476
LE RSAGQ+I V+ N++FTF++ Q FL +LC FKFG+F FFAG+V VMT+FV++++PET
Sbjct: 417 PLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPET 476
Query: 477 RNVPIEEMNRMWKAHWFWGKYIPD 500
+ VPIEEM +W HWFW K +PD
Sbjct: 477 KGVPIEEMTLLWSKHWFWKKVLPD 500
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| 255558765 | 514 | sugar transporter, putative [Ricinus com | 0.988 | 0.992 | 0.760 | 0.0 | |
| 449527119 | 515 | PREDICTED: sugar transport protein 10-li | 0.976 | 0.978 | 0.770 | 0.0 | |
| 224096526 | 514 | predicted protein [Populus trichocarpa] | 0.984 | 0.988 | 0.755 | 0.0 | |
| 224081338 | 512 | predicted protein [Populus trichocarpa] | 0.984 | 0.992 | 0.758 | 0.0 | |
| 224094052 | 511 | predicted protein [Populus trichocarpa] | 0.978 | 0.988 | 0.760 | 0.0 | |
| 224096534 | 512 | predicted protein [Populus trichocarpa] | 0.963 | 0.970 | 0.744 | 0.0 | |
| 356530254 | 512 | PREDICTED: sugar transport protein 10-li | 0.988 | 0.996 | 0.702 | 0.0 | |
| 356530258 | 512 | PREDICTED: sugar transport protein 10-li | 0.988 | 0.996 | 0.700 | 0.0 | |
| 449442427 | 518 | PREDICTED: sugar transport protein 10-li | 0.967 | 0.963 | 0.728 | 0.0 | |
| 449531978 | 518 | PREDICTED: sugar transport protein 10-li | 0.967 | 0.963 | 0.728 | 0.0 |
| >gi|255558765|ref|XP_002520406.1| sugar transporter, putative [Ricinus communis] gi|223540391|gb|EEF41961.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/514 (76%), Positives = 451/514 (87%), Gaps = 4/514 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGGG VVQG ++NYEGGVT+FV++TCLVAAMGGL+FGYD+GISGGVTSMD FL FFP
Sbjct: 1 MAGGGFVVQGSSRNYEGGVTAFVIMTCLVAAMGGLIFGYDIGISGGVTSMDSFLSKFFPT 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VY K+ K E+ YCKF+S LL LFTSSLYLAALVASFFAS VTR +GRK+SM GG+ F
Sbjct: 61 VYEKESEKHKENMYCKFESHLLQLFTSSLYLAALVASFFASTVTRTFGRKISMLFGGLVF 120
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
LIGAI+NGAA+N+AMLIIGRL+LGVGVGFANQ VPVYLSEMAPAK+RGALNIGFQMAITI
Sbjct: 121 LIGAILNGAAINVAMLIIGRLLLGVGVGFANQSVPVYLSEMAPAKLRGALNIGFQMAITI 180
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL A+L+NYGTAKI GGWGWRVSLALAAVPAI+++VGS FLPDTPNSILERG+ ++AK
Sbjct: 181 GILAASLINYGTAKIEGGWGWRVSLALAAVPAIMISVGSVFLPDTPNSILERGYPEKAKD 240
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
ML+KIRGT NVDEEFQDL DA+EAAK+V HPW NI++ +YRPQL +CT++P FQQ TGIN
Sbjct: 241 MLRKIRGTNNVDEEFQDLVDATEAAKKVEHPWRNIMQPKYRPQLVICTVVPLFQQLTGIN 300
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLFKT+GFG +ASLMSAVI+G+VNVVATLVS++ VD+FGRR+LFLEGGVQM I
Sbjct: 301 VIMFYAPVLFKTLGFGDDASLMSAVISGMVNVVATLVSIYCVDRFGRRILFLEGGVQMII 360
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
CQ +GIM+ + FG G G L+ A+ VL LIC YV+AFAWSWGPLGWLVPSE+C LEI
Sbjct: 361 CQIAIGIMIGMNFGTDGVGKLSSGSANLVLILICVYVSAFAWSWGPLGWLVPSEICPLEI 420
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480
RSAGQAINVS NM FTFV+GQ FLSMLCH KFGLF FFAGFV +MT+F+++ +PETRNVP
Sbjct: 421 RSAGQAINVSVNMFFTFVIGQFFLSMLCHMKFGLFLFFAGFVILMTIFIYFFLPETRNVP 480
Query: 481 IEEMNRMWKAHWFWGKYIPDEAVIGSSNEIQPNK 514
IEEMNR+WKAHWFWGKYIPD+A+IGS QP K
Sbjct: 481 IEEMNRVWKAHWFWGKYIPDDAIIGS----QPYK 510
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527119|ref|XP_004170560.1| PREDICTED: sugar transport protein 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/506 (77%), Positives = 451/506 (89%), Gaps = 2/506 (0%)
Query: 1 MAGGGVVVQGGA-KNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFP 59
MAGGG V +G + +NYEGGVT FV+VTCLVAAMGGLLFGYDLGISGGVTSM FL FFP
Sbjct: 1 MAGGGFVAEGSSGRNYEGGVTGFVIVTCLVAAMGGLLFGYDLGISGGVTSMPSFLDQFFP 60
Query: 60 KVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS 119
V +K + HES YCKFDS+LLTLFTSSLYLAALVASF ASV+TR +GRK SM GG+S
Sbjct: 61 SVVKK-MKGAHESEYCKFDSELLTLFTSSLYLAALVASFAASVITRKFGRKPSMFFGGLS 119
Query: 120 FLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179
FLIG+I+NG A I +LIIGRL+LGVGVGFANQ VPVYLSEMAPAK+RGALN+GFQMAIT
Sbjct: 120 FLIGSILNGVANGIGLLIIGRLLLGVGVGFANQSVPVYLSEMAPAKIRGALNMGFQMAIT 179
Query: 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAK 239
IGIL+A+LVN GT+KI GGWGWRVSLALA+VPA++MT+G+ FLPDTPNSILERG ++AK
Sbjct: 180 IGILVASLVNVGTSKIEGGWGWRVSLALASVPAVMMTIGAIFLPDTPNSILERGFTEKAK 239
Query: 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGI 299
MLQK+RGT NV+EEF+DL DASEAAK+V HPWTNIL+ +YRPQL MCT+IPFFQQ TGI
Sbjct: 240 TMLQKVRGTDNVEEEFKDLLDASEAAKKVDHPWTNILKPQYRPQLVMCTIIPFFQQLTGI 299
Query: 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMF 359
NVIMFYAPVLF T+GFG +ASL+SAVI+G VNV+ATLVS+F+VDKFGRR+LFLEGGVQMF
Sbjct: 300 NVIMFYAPVLFMTLGFGDDASLISAVISGGVNVLATLVSIFTVDKFGRRILFLEGGVQMF 359
Query: 360 ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
ICQ LVG ++ +KFGL GEGTL+KFDA+ +LFL+C YVAAFAWSWGPLGWLVPSE+C LE
Sbjct: 360 ICQILVGTLIGVKFGLNGEGTLSKFDANLILFLVCTYVAAFAWSWGPLGWLVPSEICPLE 419
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IRSAGQAINVS NM FTF++ QVFL+MLCH KFGLF+FFAGFV +MTVF+++ +PET+NV
Sbjct: 420 IRSAGQAINVSVNMFFTFIIAQVFLAMLCHMKFGLFYFFAGFVLIMTVFIYFFLPETKNV 479
Query: 480 PIEEMNRMWKAHWFWGKYIPDEAVIG 505
PIEEMNR+WKAHWFWGKYIPDE +IG
Sbjct: 480 PIEEMNRVWKAHWFWGKYIPDEVIIG 505
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096526|ref|XP_002310644.1| predicted protein [Populus trichocarpa] gi|222853547|gb|EEE91094.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/508 (75%), Positives = 445/508 (87%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGGG V Q G +NYEGGVT+FV++TCLVAAMGGL+FGYD+GISGGVTSMD FLK FFP
Sbjct: 1 MAGGGFVAQSGGRNYEGGVTTFVIITCLVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPS 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VY K+ + H++ YCKFDS LL LFTSSLYLAALVASFF+S VTR++GRK+SM GG+ F
Sbjct: 61 VYNKEKEERHDNMYCKFDSHLLQLFTSSLYLAALVASFFSSTVTRLFGRKISMLCGGLVF 120
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
L+GAIINGAA N+AMLIIGRL+LGVGVGFANQ VP+YLSEMAPAK+RGALNIGFQMAITI
Sbjct: 121 LVGAIINGAAKNVAMLIIGRLLLGVGVGFANQSVPIYLSEMAPAKIRGALNIGFQMAITI 180
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL ANL+NYGT+KI G+GWR+SLALAAVPA+++ VGSFFLPDTPNSILERG+ ++AKK
Sbjct: 181 GILAANLINYGTSKIEDGYGWRISLALAAVPAVMIVVGSFFLPDTPNSILERGYPEKAKK 240
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
MLQKIRG NV+ EFQDL DASEAAK+V HPW NIL+ RYRPQL +C LIPFFQQ TGIN
Sbjct: 241 MLQKIRGADNVEAEFQDLVDASEAAKKVEHPWKNILQPRYRPQLVICALIPFFQQITGIN 300
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLFKT+GFG +ASLMSAVITG+VNVV T VS++S D+FGRR+LFLEGG+QM I
Sbjct: 301 VIMFYAPVLFKTLGFGDDASLMSAVITGMVNVVCTAVSIYSADRFGRRILFLEGGIQMII 360
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
Q LV +M+ + FG G G ++ A+FVLFLICAYVAAFAWSWGPLGWLVPSE+C LEI
Sbjct: 361 SQILVAVMIGINFGTNGVGNMSGSTANFVLFLICAYVAAFAWSWGPLGWLVPSEICPLEI 420
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480
RSAGQAINVS NM FTF++GQ FL+MLCH KFGLF FFAGFV +MT+F+++ +PET+NVP
Sbjct: 421 RSAGQAINVSVNMFFTFLIGQFFLTMLCHLKFGLFLFFAGFVVIMTIFIYFFLPETKNVP 480
Query: 481 IEEMNRMWKAHWFWGKYIPDEAVIGSSN 508
IEEMN +WKAHWFWGKYIPD+AVIG N
Sbjct: 481 IEEMNTVWKAHWFWGKYIPDDAVIGGQN 508
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081338|ref|XP_002306376.1| predicted protein [Populus trichocarpa] gi|222855825|gb|EEE93372.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/509 (75%), Positives = 444/509 (87%), Gaps = 1/509 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGG V G + YEGGVT FV++TCLVAAMGGL+FGYD+GISGGVTSMD FLK FFP
Sbjct: 1 MAGGAFVAHGSGRKYEGGVTCFVIITCLVAAMGGLIFGYDIGISGGVTSMDSFLKRFFPS 60
Query: 61 VYRKQLN-KGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS 119
VY K+ + + YCKFDS LLTLFTSSLYLAALVASFF+S VTR++GRK+SM GG+
Sbjct: 61 VYNKEHETRDDNNMYCKFDSHLLTLFTSSLYLAALVASFFSSTVTRLFGRKISMLFGGLV 120
Query: 120 FLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179
FL+GAI NGAA NIAMLIIGRL+LGVGVGFANQ VP+YLSEMAPA++RGALNIGFQMAIT
Sbjct: 121 FLVGAIFNGAATNIAMLIIGRLLLGVGVGFANQSVPIYLSEMAPAQIRGALNIGFQMAIT 180
Query: 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAK 239
IGIL ANL+NYGTA+I G+GWR+SL LAAVPA+++T+GSFFLPDTPNSILERGH ++AK
Sbjct: 181 IGILAANLINYGTAQIKEGYGWRISLGLAAVPALMITIGSFFLPDTPNSILERGHPEQAK 240
Query: 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGI 299
+MLQKIRGT NV+ EFQDL DA+EAAK+V HPW NIL+ +YRPQL +CT+IPFFQQ TGI
Sbjct: 241 RMLQKIRGTDNVEVEFQDLVDATEAAKKVEHPWKNILQPKYRPQLVICTMIPFFQQLTGI 300
Query: 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMF 359
NVIMFYAPVLFKT+GFG +A+LMSAVITG+VN+V TLVSV+S D+FGRR+LFLEGGVQM
Sbjct: 301 NVIMFYAPVLFKTLGFGDDAALMSAVITGLVNLVCTLVSVYSADRFGRRILFLEGGVQMI 360
Query: 360 ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
I Q LVGIM+A+ FG RG G L+K A+ VLF ICAYVAAFAWSWGPLGWLVPSE+C LE
Sbjct: 361 ISQILVGIMIAINFGTRGVGELSKGSANLVLFFICAYVAAFAWSWGPLGWLVPSEICPLE 420
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IRSAGQAINVS NM FTF++GQ FLSMLCH KFGLF FFAGFV +MT+ VF+ +PET+NV
Sbjct: 421 IRSAGQAINVSVNMFFTFLIGQFFLSMLCHMKFGLFLFFAGFVVLMTICVFFFLPETKNV 480
Query: 480 PIEEMNRMWKAHWFWGKYIPDEAVIGSSN 508
PIEEMNR+WKAHWFWGKYIPD+AVIGS
Sbjct: 481 PIEEMNRVWKAHWFWGKYIPDDAVIGSQT 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224094052|ref|XP_002310067.1| predicted protein [Populus trichocarpa] gi|222852970|gb|EEE90517.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/505 (76%), Positives = 444/505 (87%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGGG V Q G +NYEGGVT+FV++TCLVAAMGGL+FGYD+GISGGVTSMD FLK FFP
Sbjct: 1 MAGGGFVAQSGGRNYEGGVTTFVIITCLVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPS 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120
VY K+ + H++ YCKFDS LL LFTSSLYLAALVASFF+S VTR++GRK+SM GG+ F
Sbjct: 61 VYNKEKEERHDNMYCKFDSHLLQLFTSSLYLAALVASFFSSTVTRLFGRKISMLCGGLVF 120
Query: 121 LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
L+GAIINGAA N+AMLIIGRL+LGVGVGFANQ VP+YLSEMAPAK+RGALNIGFQMAITI
Sbjct: 121 LVGAIINGAAKNVAMLIIGRLLLGVGVGFANQSVPIYLSEMAPAKIRGALNIGFQMAITI 180
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GIL ANL+NYGT+KI G+GWR+SLALAAVPA+++ VGSFFLPDTPNSILERG+ ++AKK
Sbjct: 181 GILAANLINYGTSKIEDGYGWRISLALAAVPAVMIVVGSFFLPDTPNSILERGYPEKAKK 240
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
MLQKIRG NV+ EFQDL DASEAAK+V HPW NIL+ RYRPQL +C LIPFFQQ TGIN
Sbjct: 241 MLQKIRGADNVEAEFQDLVDASEAAKKVEHPWKNILQPRYRPQLVICALIPFFQQITGIN 300
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VIMFYAPVLFKT+GFG +ASLMSAVITG+VNVV T VS++S D+FGRR+LFLEGG+QM I
Sbjct: 301 VIMFYAPVLFKTLGFGDDASLMSAVITGMVNVVCTAVSIYSADRFGRRILFLEGGIQMII 360
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
Q LV +M+A+ FG G G ++ A+FVLFLICAYVAAFAWSWGPLGWLVPSE+C LEI
Sbjct: 361 SQILVAVMIAINFGTNGVGEMSGSTANFVLFLICAYVAAFAWSWGPLGWLVPSEICPLEI 420
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480
RSAGQAINVS NM FTF +GQ FL+MLCHFKFGLF FFAGFV +MT+F+++ +PET+NVP
Sbjct: 421 RSAGQAINVSVNMFFTFFIGQFFLTMLCHFKFGLFLFFAGFVVIMTIFIYFFLPETKNVP 480
Query: 481 IEEMNRMWKAHWFWGKYIPDEAVIG 505
IEEMN +WKAHWFW KYIPD+AVIG
Sbjct: 481 IEEMNTVWKAHWFWSKYIPDDAVIG 505
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096534|ref|XP_002310647.1| predicted protein [Populus trichocarpa] gi|222853550|gb|EEE91097.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/497 (74%), Positives = 422/497 (84%)
Query: 13 KNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHES 72
+ YEGGVT+FV++TCLVAAMGGL+FGYD+GISGGVT+MD FLK FFP VY+KQ E+
Sbjct: 14 RKYEGGVTAFVVITCLVAAMGGLMFGYDIGISGGVTAMDSFLKPFFPHVYKKQHGNHEEN 73
Query: 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVN 132
YCKFD +LT+FTSSLYLAAL+ASFFAS TR +GRKMSM GG+ FL GAI+NGAAVN
Sbjct: 74 MYCKFDDHVLTMFTSSLYLAALIASFFASATTRRFGRKMSMMFGGLVFLGGAILNGAAVN 133
Query: 133 IAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGT 192
+AMLI+GRLMLGVGVGFANQ VPVYLSEMAPA +RGALNIGFQMAITIGIL ANL+NYGT
Sbjct: 134 VAMLIVGRLMLGVGVGFANQSVPVYLSEMAPANLRGALNIGFQMAITIGILAANLINYGT 193
Query: 193 AKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVD 252
+KI GWGWR+SL LAA PAIL T+GS FLPDTPNSILERG+ ++AKKMLQKIRGT NVD
Sbjct: 194 SKIKAGWGWRISLGLAAAPAILFTIGSLFLPDTPNSILERGNHEKAKKMLQKIRGTNNVD 253
Query: 253 EEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312
EEFQDL DAS AAKQV HPW N +YRPQL +CT IPFFQQ TGINVIMFYAPVLFKT
Sbjct: 254 EEFQDLVDASMAAKQVEHPWKNFTGRKYRPQLIICTFIPFFQQLTGINVIMFYAPVLFKT 313
Query: 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
+GFG +ASLMSAVITGVVNVVAT+VSV+SVDK GR+ LFLEGGVQM ICQ LV +M+
Sbjct: 314 LGFGDDASLMSAVITGVVNVVATMVSVYSVDKLGRKALFLEGGVQMIICQVLVAVMIGRA 373
Query: 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
FG GEG ++K + VLFLICAYVAAFAWSWGPLGWLVPSE+C LEIRSAGQA NVS N
Sbjct: 374 FGTEGEGGMSKSVSSLVLFLICAYVAAFAWSWGPLGWLVPSEICPLEIRSAGQATNVSVN 433
Query: 433 MIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMWKAHW 492
M FTFV+GQ FLSMLCH KFGLF FF GFV +MT+F+++ VPET+NVPIEEMN++WK H
Sbjct: 434 MFFTFVIGQFFLSMLCHMKFGLFLFFGGFVIIMTIFIYFFVPETKNVPIEEMNQVWKEHG 493
Query: 493 FWGKYIPDEAVIGSSNE 509
FW KY+ ++ V G ++
Sbjct: 494 FWSKYVSNDDVTGRTSS 510
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530254|ref|XP_003533697.1| PREDICTED: sugar transport protein 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/514 (70%), Positives = 425/514 (82%), Gaps = 4/514 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGG V G ++YEG VT FVL+TC VAAMGGLLFGYDLGI+GGVTSMD FL FFP
Sbjct: 1 MAGGSFVDSNGVRHYEGKVTGFVLITCFVAAMGGLLFGYDLGITGGVTSMDPFLIKFFPV 60
Query: 61 VYRKQLNKGH-ESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS 119
VYR+ + +S YCKFD+QLLTLFTSSLYLAAL+A FFAS TRM+GRK SM +GG+
Sbjct: 61 VYRQMKGEAESKSQYCKFDNQLLTLFTSSLYLAALIACFFASTTTRMFGRKPSMFIGGLF 120
Query: 120 FLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179
FLIGA++NG A+NI MLIIGR++LG GVGF NQ VPVYLSEMAPAK+RGALNIGFQM IT
Sbjct: 121 FLIGALLNGLAINIEMLIIGRILLGFGVGFCNQSVPVYLSEMAPAKIRGALNIGFQMMIT 180
Query: 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAK 239
IGILIANL+NYGT+K GW R+SL + AVPAIL+ +GS L +TPNS++ER ++AK
Sbjct: 181 IGILIANLINYGTSKHENGW--RMSLGIGAVPAILLCIGSLCLDETPNSLIERDQHEKAK 238
Query: 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGI 299
+ML+KIRGT NV+EE+QDL DASEAAK V HPW NI++ +YRPQL C IP FQQ TGI
Sbjct: 239 EMLKKIRGTENVEEEYQDLVDASEAAKMVDHPWKNIVQPKYRPQLIFCIFIPTFQQLTGI 298
Query: 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMF 359
NVIMFYAPVLFK +GFG +ASLMSAVITGVVNVVATLVS+F+VDKFGRRVLFLEGG QM
Sbjct: 299 NVIMFYAPVLFKILGFGNDASLMSAVITGVVNVVATLVSIFTVDKFGRRVLFLEGGAQML 358
Query: 360 ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
ICQ ++GIM+ LKFGL GEG+ +K +AD +LF ICAYVAAFAWSWGPLGWLVPSE C+LE
Sbjct: 359 ICQVIIGIMIGLKFGLNGEGSFSKGEADVLLFFICAYVAAFAWSWGPLGWLVPSETCSLE 418
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IR AGQAINV+ NM+FTF++ QVFL+MLCH KFGLFF FAG V +MT+F+ ++PET+NV
Sbjct: 419 IRPAGQAINVAMNMLFTFIIAQVFLTMLCHLKFGLFFLFAGCVVIMTLFIALLLPETKNV 478
Query: 480 PIEEMNRMWKAHWFWGKYIPD-EAVIGSSNEIQP 512
PIEEMNR+WKAHWFW K +PD A + ++ P
Sbjct: 479 PIEEMNRIWKAHWFWTKIVPDVAATVAPGKKVVP 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530258|ref|XP_003533699.1| PREDICTED: sugar transport protein 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/514 (70%), Positives = 424/514 (82%), Gaps = 4/514 (0%)
Query: 1 MAGGGVVVQGGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MAGG V G ++YEG VT FVL+TC VAAMGGLLFGYDLGI+GGVTSMD FL FFP
Sbjct: 1 MAGGSFVDSNGVRHYEGKVTGFVLITCFVAAMGGLLFGYDLGITGGVTSMDPFLIKFFPV 60
Query: 61 VYRKQLNKGH-ESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS 119
VYR+ + +S YCKFD+QLLTLFTSSLYLAAL+A FFAS TRM+GRK SM +GG+
Sbjct: 61 VYRQMKGEAESKSQYCKFDNQLLTLFTSSLYLAALIACFFASTTTRMFGRKPSMFIGGLF 120
Query: 120 FLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179
FLIGA++NG A+NI MLIIGR++LG GVGF NQ VPVYLSEMAPAK+RGALNIGFQM IT
Sbjct: 121 FLIGALLNGLAINIEMLIIGRILLGFGVGFCNQSVPVYLSEMAPAKIRGALNIGFQMMIT 180
Query: 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAK 239
IGILIANL+NYGT+K GW R+SL + AVPAIL+ +GS L +TPNS++ER ++AK
Sbjct: 181 IGILIANLINYGTSKHENGW--RMSLGIGAVPAILLCIGSLCLDETPNSLIERDQHEKAK 238
Query: 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGI 299
+ML+KIRGT NV+EE+QDL DASEAAK V HPW NI++ +YRPQL C IP FQQ TGI
Sbjct: 239 EMLKKIRGTENVEEEYQDLVDASEAAKMVDHPWKNIVQPKYRPQLIFCIFIPTFQQLTGI 298
Query: 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMF 359
NVIMFYAPVL K +GFG +ASLMSAVITGVVNVVATLVS+F+VDKFGRRVLFLEGG QM
Sbjct: 299 NVIMFYAPVLLKILGFGNDASLMSAVITGVVNVVATLVSIFTVDKFGRRVLFLEGGAQML 358
Query: 360 ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419
ICQ ++GIM+ LKFGL GEG+ +K +AD +LF ICAYVAAFAWSWGPLGWLVPSE C+LE
Sbjct: 359 ICQVIIGIMIGLKFGLNGEGSFSKGEADVLLFFICAYVAAFAWSWGPLGWLVPSETCSLE 418
Query: 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNV 479
IR AGQAINV+ NM+FTF++ QVFL+MLCH KFGLFF FAG V +MT+F+ ++PET+NV
Sbjct: 419 IRPAGQAINVAMNMLFTFIIAQVFLTMLCHLKFGLFFLFAGCVVIMTLFIALLLPETKNV 478
Query: 480 PIEEMNRMWKAHWFWGKYIPD-EAVIGSSNEIQP 512
PIEEMNR+WKAHWFW K +PD A + ++ P
Sbjct: 479 PIEEMNRIWKAHWFWTKIVPDVAATVAPGKKVVP 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442427|ref|XP_004138983.1| PREDICTED: sugar transport protein 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/500 (72%), Positives = 432/500 (86%), Gaps = 1/500 (0%)
Query: 14 NYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESA 73
++EG V +FV++TCLVAAMGGL+FGYDLGISGGVTSM+ FLK FFP VY +Q +
Sbjct: 14 HHEGNVNTFVIITCLVAAMGGLIFGYDLGISGGVTSMEHFLKQFFPSVYEQQAKAAGGNQ 73
Query: 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNI 133
YCKFDSQLLTLFTSSLYLAAL ASF ASVVTR +GRKMSM GG FL+G+I+NGAAVN+
Sbjct: 74 YCKFDSQLLTLFTSSLYLAALAASFLASVVTRAFGRKMSMLTGGSVFLVGSILNGAAVNV 133
Query: 134 AMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
MLIIGRL+LGVGVGFANQ VPVYLSEMAP K+RGALNIGFQMAITIGIL+ANLVNYGTA
Sbjct: 134 EMLIIGRLLLGVGVGFANQSVPVYLSEMAPPKIRGALNIGFQMAITIGILVANLVNYGTA 193
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253
+I GWGWR+SLALAAVPAI+MTVG+FFLPDTPNSILERG +++A+KML+KIRG NVD
Sbjct: 194 QIKNGWGWRLSLALAAVPAIMMTVGAFFLPDTPNSILERGDMEKARKMLKKIRGLDNVDA 253
Query: 254 EFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313
EFQ+L DA E+AK+V HPW NI++ RYRPQL +C++IPFFQQ TGINVI FYAPVL+KT+
Sbjct: 254 EFQELVDACESAKKVQHPWKNIMQPRYRPQLVICSVIPFFQQLTGINVITFYAPVLYKTL 313
Query: 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKF 373
GFG ASLMSAVI+G VNV+AT+VS+ +VDKFGR+ LF+EGG QMFI Q VG M+ F
Sbjct: 314 GFGDSASLMSAVISGAVNVLATIVSIVTVDKFGRKFLFMEGGAQMFISQIAVGSMIWKNF 373
Query: 374 GLRGEGTLT-KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
G+ GEG+++ DAD +L LIC YVA FAWSWGPLGWLVPSE+C LEIRSAGQAINVS N
Sbjct: 374 GVNGEGSMSGGIDADILLALICVYVAGFAWSWGPLGWLVPSEICPLEIRSAGQAINVSVN 433
Query: 433 MIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMWKAHW 492
M +TFV+GQ+FLSMLCH KFGLF+FFAGFVA+MT+F+++ +PET+NVPIEEMN +W+AHW
Sbjct: 434 MFWTFVIGQLFLSMLCHMKFGLFYFFAGFVALMTIFIYWFLPETKNVPIEEMNSVWRAHW 493
Query: 493 FWGKYIPDEAVIGSSNEIQP 512
FWGK+IP++AVIG ++P
Sbjct: 494 FWGKFIPEDAVIGHHVSMEP 513
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531978|ref|XP_004172962.1| PREDICTED: sugar transport protein 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/500 (72%), Positives = 432/500 (86%), Gaps = 1/500 (0%)
Query: 14 NYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESA 73
++EG V +FV++TCLVAAMGGL+FGYDLGISGGVTSM+ FLK FFP VY +Q +
Sbjct: 14 HHEGNVNTFVIITCLVAAMGGLIFGYDLGISGGVTSMEHFLKQFFPSVYEQQAKAAGGNQ 73
Query: 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNI 133
YCKFDSQLLTLFTSSLYLAAL ASF ASVVTR +GRKMSM GG FL+G+I+NGAAVN+
Sbjct: 74 YCKFDSQLLTLFTSSLYLAALAASFLASVVTRAFGRKMSMLTGGSVFLVGSILNGAAVNV 133
Query: 134 AMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
MLIIGRL+LGVGVGFANQ VPVYLSEMAP K+RGALNIGFQMAITIGIL+ANLVNYGTA
Sbjct: 134 EMLIIGRLLLGVGVGFANQSVPVYLSEMAPPKIRGALNIGFQMAITIGILVANLVNYGTA 193
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253
+I GWGWR+SLALAAVPAI+MTVG+FFLPDTPNSILERG +++A+KML+KIRG NVD
Sbjct: 194 QIKNGWGWRLSLALAAVPAIMMTVGAFFLPDTPNSILERGDMEKARKMLKKIRGLDNVDA 253
Query: 254 EFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313
EFQ+L DA E+AK+V HPW NI++ RYRPQL +C++IPFFQQ TGINVI FYAPVL+KT+
Sbjct: 254 EFQELVDACESAKKVQHPWKNIMQPRYRPQLVICSVIPFFQQLTGINVITFYAPVLYKTL 313
Query: 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKF 373
GFG ASLMSAVI+G VNV+AT+VS+ +VDKFGR+ LF+EGG QMFI Q VG M+ F
Sbjct: 314 GFGDSASLMSAVISGAVNVLATIVSIVTVDKFGRKFLFMEGGAQMFISQIAVGSMIWKNF 373
Query: 374 GLRGEGTLT-KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
G+ GEG+++ DAD +L LIC YVA FAWSWGPLGWLVPSE+C LEIRSAGQAINVS N
Sbjct: 374 GVNGEGSMSGGIDADILLALICVYVAGFAWSWGPLGWLVPSEICPLEIRSAGQAINVSVN 433
Query: 433 MIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMWKAHW 492
M +TFV+GQ+FLSMLCH KFGLF+FFAGFVA+MT+F+++ +PET+NVPIEEMN +W+AHW
Sbjct: 434 MFWTFVIGQLFLSMLCHMKFGLFYFFAGFVALMTIFIYWFLPETKNVPIEEMNSVWRAHW 493
Query: 493 FWGKYIPDEAVIGSSNEIQP 512
FWGK+IP++AVIG ++P
Sbjct: 494 FWGKFIPEDAVIGPHVGMEP 513
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 516 | ||||||
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.967 | 0.970 | 0.629 | 2.3e-174 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.959 | 0.957 | 0.629 | 4.4e-171 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.937 | 0.941 | 0.632 | 2e-168 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.988 | 0.992 | 0.573 | 2.2e-162 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.968 | 0.957 | 0.555 | 6.7e-152 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.939 | 0.922 | 0.528 | 1.3e-141 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.939 | 0.945 | 0.511 | 2.8e-137 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.934 | 0.956 | 0.495 | 9.6e-128 | |
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.941 | 0.958 | 0.464 | 1.5e-122 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.941 | 0.958 | 0.461 | 2e-120 |
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1694 (601.4 bits), Expect = 2.3e-174, P = 2.3e-174
Identities = 316/502 (62%), Positives = 385/502 (76%)
Query: 13 KNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKG-HE 71
++YEGGVT+FV++TC+VAAMGGLLFGYDLGISGGVTSM++FL FFP+V Q+ K H+
Sbjct: 15 RSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQV-ESQMKKAKHD 73
Query: 72 SAYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXX 131
+AYCKFD+Q+L LFT TR +GRK+SM +GG++FL
Sbjct: 74 TAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAV 133
Query: 132 XXXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYG 191
MLIIGRL+LGVGVGFANQ PVYLSEMAPAK+RGALNIGFQMAITIGIL+ANL+NYG
Sbjct: 134 NVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYG 193
Query: 192 TAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNV 251
T+K++ GWRVSL LAAVPA++M +GSF LPDTPNS+LERG +EAK+ML+KIRG NV
Sbjct: 194 TSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNV 252
Query: 252 DEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311
D EFQDL DA EAAK+V +PW NI+ +YRP L C+ IPFFQQ TGINVIMFYAPVLFK
Sbjct: 253 DHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFK 312
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
T+GFG +A+LMSAVITGVVN+++T VS+++VD++GRR+LFLEGG+QMFICQ LVG +
Sbjct: 313 TLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGA 372
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
+FG G GTLT AD++L IC YVA FAWSWGPLGWLVPSE+C LEIR AGQAINVS
Sbjct: 373 RFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSV 432
Query: 432 NMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAH 491
NM FTF++GQ FL+MLCH +++PET+ VPIEEM R+WK H
Sbjct: 433 NMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQH 492
Query: 492 WFWGKYIPDEAVIGSSNEIQPN 513
WFW KYIP++A+IG ++ N
Sbjct: 493 WFWKKYIPEDAIIGGHDDNNTN 514
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 4.4e-171, P = 4.4e-171
Identities = 313/497 (62%), Positives = 378/497 (76%)
Query: 14 NYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESA 73
+YEGGVT FV++TC+VAAMGGLLFGYDLGISGGVTSM++FL FFP+V ++ E+A
Sbjct: 16 SYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETA 75
Query: 74 YCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXXXX 133
YCKFD+QLL LFT TR YGRK+SM VGG++FL
Sbjct: 76 YCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNV 135
Query: 134 XMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
MLI+GRL+LGVGVGFANQ PVYLSEMAPAK+RGALNIGFQMAITIGILIANL+NYGT+
Sbjct: 136 AMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTS 195
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253
+++ GWRVSL LAAVPA++M +GSF LPDTPNS+LERG ++A++MLQKIRG NVDE
Sbjct: 196 QMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDE 254
Query: 254 EFQDLYDASEAAKQVHHPWTNILR-GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312
EFQDL DA EAAK+V +PW NI + +YRP L C+ IPFFQQ TGINVIMFYAPVLFKT
Sbjct: 255 EFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKT 314
Query: 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
+GF +ASL+SAVITG VNVV+TLVS+++VD++GRR+LFLEGG+QM + Q +VG ++ +K
Sbjct: 315 LGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMK 374
Query: 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
FG G GTLT AD++L IC YVA FAWSWGPLGWLVPSE+C LEIR AGQAINVS N
Sbjct: 375 FGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 434
Query: 433 MIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAHW 492
M FTF++GQ FL+MLCH +++PET+ VPIEEM R+WK H
Sbjct: 435 MFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHP 494
Query: 493 FWGKYIPDEAVIGSSNE 509
FW +Y+PD+AVIG E
Sbjct: 495 FWKRYMPDDAVIGGGEE 511
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
Identities = 307/485 (63%), Positives = 368/485 (75%)
Query: 14 NYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNK-GHES 72
+YEG VT+FV++TC+VAAMGGLLFGYD+GISGGV SM+ FL FFP V R+ NK G E+
Sbjct: 15 DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRET 74
Query: 73 AYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXXX 132
YCK+D++LLTLFT TR++GRK+SM +G ++FL
Sbjct: 75 EYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAIN 134
Query: 133 XXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGT 192
MLIIGRL LGVGVGFANQ VP+YLSEMAPAK+RGALNIGFQ+AITIGIL AN+VNY T
Sbjct: 135 LEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVT 194
Query: 193 AKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVD 252
K+ G GWR+SL LA VPA++M VG FFLPDTPNSILERG+ ++AK+MLQKIRGT V+
Sbjct: 195 PKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGTMEVE 254
Query: 253 EEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312
EF +L +A EAAK+V HPWTNI++ RYRPQLT CT IPFFQQ TGINVIMFYAPVLFKT
Sbjct: 255 HEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKT 314
Query: 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
IGFG +ASL+SAVITG+VNV++T+VS++SVDKFGRR LFL+GG QM + Q VG M+ K
Sbjct: 315 IGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
FG GEG L+ DAD +L LIC YVA FAWSWGPLGWLVPSE+C LEIRSAGQ++NVS N
Sbjct: 375 FGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVN 434
Query: 433 MIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAHW 492
M FTF +GQ FL+MLCH +++PET+ VPIEEM ++WK H
Sbjct: 435 MFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHR 494
Query: 493 FWGKY 497
+WGKY
Sbjct: 495 YWGKY 499
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
Identities = 293/511 (57%), Positives = 367/511 (71%)
Query: 1 MAXXXXXXXXXAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPK 60
MA +NY +T V VTC + A GGL+FGYDLGISGGVTSM+ FL++FFP
Sbjct: 1 MAGGFVSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPY 60
Query: 61 VYRKQLNKGHESAYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISF 120
VY+K + HE+ YC+FDSQLLTLFT TR++GRK SM +GG +F
Sbjct: 61 VYKK-MKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTF 119
Query: 121 LXXXXXXXXXXXXXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180
ML+IGR++LG GVGFANQ VPVYLSEMAP +RGA N GFQ+AI
Sbjct: 120 FIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIF 179
Query: 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240
GI++A ++NY TA++ G GWR+SL LA VPA+++ +G+ LPDTPNS++ERG+ +EAK+
Sbjct: 180 GIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKE 239
Query: 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300
MLQ IRGT VDEEFQDL DASE +KQV HPW NI+ RYRPQL M IPFFQQ TGIN
Sbjct: 240 MLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGIN 299
Query: 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360
VI FYAPVLF+T+GFG++ASL+SA++TG++ ++ T VSVF+VD+FGRR+LFL+GG+QM +
Sbjct: 300 VITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLV 359
Query: 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420
Q +G M+ +KFG+ G G + K DA+ ++ LIC YVA FAWSWGPLGWLVPSE+ LEI
Sbjct: 360 SQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEI 419
Query: 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVP 480
RSA QAINVS NM FTF+V Q+FL+MLCH M+PET+NVP
Sbjct: 420 RSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVP 479
Query: 481 IEEMNRMWKAHWFWGKYIPDEAVIGSSNEIQ 511
IEEMNR+WKAHWFWGK+IPDEAV + E+Q
Sbjct: 480 IEEMNRVWKAHWFWGKFIPDEAVNMGAAEMQ 510
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
Identities = 279/502 (55%), Positives = 350/502 (69%)
Query: 13 KNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHES 72
K Y G +T FVL TC+VAAMGGL+FGYD+GISGGVTSM FLK FFP VYRKQ +
Sbjct: 13 KAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTN 72
Query: 73 AYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXXX 132
YC++DS LT+FT TR +GR++SM GGI F
Sbjct: 73 QYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKH 132
Query: 133 XXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGT 192
MLI+GR++LG G+GFANQ VP+YLSEMAP K RGALNIGFQ++ITIGIL+A ++NY
Sbjct: 133 VWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFF 192
Query: 193 AKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVD 252
AKI GGWGWR+SL A VPA+++T+GS LPDTPNS++ERG +EAK L++IRG +V
Sbjct: 193 AKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVS 252
Query: 253 EEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312
+EF DL AS+ ++ + HPW N+LR +YRP LTM +IPFFQQ TGINVIMFYAPVLF T
Sbjct: 253 QEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNT 312
Query: 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
IGF +ASLMSAV+TG VNV ATLVS++ VD++GRR LFLEGG QM ICQ +V + K
Sbjct: 313 IGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAK 372
Query: 373 FGLRGE-GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
FG+ G G L K+ A V+ IC YVA FAWSWGPLGWLVPSE+ LEIRSA Q+I VS
Sbjct: 373 FGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSV 432
Query: 432 NMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAH 491
NMIFTF++ Q+FL+MLCH +PET+ +PIEEM ++W++H
Sbjct: 433 NMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSH 492
Query: 492 WFWGKYIPDEAVIGSSNEIQPN 513
W+W +++ D G++ E+ N
Sbjct: 493 WYWSRFVED-GEYGNALEMGKN 513
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
Identities = 258/488 (52%), Positives = 340/488 (69%)
Query: 15 YEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQL-NKGHESA 73
+E +T V+++C++AA GGL+FGYD+G+SGGVTSM FL+ FFP VYRK + +S
Sbjct: 15 FEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSN 74
Query: 74 YCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXXXX 133
YCK+D+Q L LFT TR GR+++M + G+ F+
Sbjct: 75 YCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDL 134
Query: 134 XMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
MLI GR++LG GVGFANQ VP++LSE+AP ++RG LNI FQ+ +TIGIL ANLVNYGTA
Sbjct: 135 AMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTA 194
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253
KI GGWGWR+SL LA +PA+L+TVG+ + +TPNS++ERG +DE K +L++IRGT NV+
Sbjct: 195 KIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVEP 254
Query: 254 EFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313
EF DL +AS AK+V HP+ N+L+ R RPQL + + FQQ TGIN IMFYAPVLF T+
Sbjct: 255 EFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTL 314
Query: 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKF 373
GFG++ASL SAV+TG VNV++TLVS++SVDK GRRVL LE GVQMF Q ++ I+L +K
Sbjct: 315 GFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKV 374
Query: 374 GLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNM 433
L+K A V+ +IC YVAAFAWSWGPLGWL+PSE LE RSAGQ++ V N+
Sbjct: 375 -TDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 433
Query: 434 IFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMN-RMWKAHW 492
+FTF++ Q FLSMLCH +++PET+N+PIEEM R+WK HW
Sbjct: 434 LFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHW 493
Query: 493 FWGKYIPD 500
FW +++ D
Sbjct: 494 FWARFMDD 501
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 250/489 (51%), Positives = 332/489 (67%)
Query: 12 AKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHE 71
A+ Y+G VTS+V++ CLVAA+GG +FGYD+GISGGVTSMD+FL++FF VY K+ + HE
Sbjct: 16 AEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKK-KQAHE 74
Query: 72 SAYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXX 131
S YCK+D+Q L FT TR YGR+ S+ GGISFL
Sbjct: 75 SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAV 134
Query: 132 XXXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYG 191
ML+ GR+MLGVG+GF NQ VP+YLSE+AP +RG LN+ FQ+A TIGI AN+VNYG
Sbjct: 135 NLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYG 194
Query: 192 TAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNV 251
T ++ WGWR+SL LAA PA+LMT+G +FLP+TPNS++ERG + +++L K+RGT NV
Sbjct: 195 TQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENV 253
Query: 252 DEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311
+ E QD+ DASE A + HP+ NIL+ R+RPQL M +P FQ TGIN I+FYAPVLF+
Sbjct: 254 NAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQ 313
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
T+GFG ASL S+ +TG V V++T +S+ VD+ GRR L + GG+QM ICQ +V ++L +
Sbjct: 314 TMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGV 373
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
KFG E L+K + V+ IC +V AF WSWGPLGW +PSE+ LE RSAGQ+I V+
Sbjct: 374 KFGDNQE--LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAV 431
Query: 432 NMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAH 491
N++FTF++ Q FL +LC +++PET+ VPIEEM +W H
Sbjct: 432 NLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKH 491
Query: 492 WFWGKYIPD 500
WFW K +PD
Sbjct: 492 WFWKKVLPD 500
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
Identities = 242/488 (49%), Positives = 329/488 (67%)
Query: 15 YEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVY-RKQLNKGHESA 73
YE +TS+ + C+V +MGG LFGYDLG+SGGVTSMD FLK+FFP +Y RKQ++ +E+
Sbjct: 18 YEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHL-NETD 76
Query: 74 YCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXXXX 133
YCK+D+Q+LTLFT TR+YGR+ S+ VG +SF
Sbjct: 77 YCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNI 136
Query: 134 XMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
MLI+GR+ LG+G+GF NQ VP+YLSEMAPAK+RG +N FQ+ IGIL+ANL+NY T
Sbjct: 137 LMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTE 196
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253
+I WGWR+SL LA VPAILM +G LP+TPNS++E+G +++AK +L K+RGT N++
Sbjct: 197 QIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEA 255
Query: 254 EFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTL-IPFFQQFTGINVIMFYAPVLFKT 312
EFQDL +AS+AA+ V +P+ N+L R RPQL + + +P FQQ TG+N I+FYAPV+F++
Sbjct: 256 EFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQS 315
Query: 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
+GFG ASL+S+ IT VVA ++S++S DKFGRR L LE V+MF +VG+ LALK
Sbjct: 316 LGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALK 375
Query: 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
FG G+ L K ++ LIC +V A+ SWGP+GWLVPSE+ LE RSAGQ++ V N
Sbjct: 376 FG-EGK-ELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVN 433
Query: 433 MIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNRMWKAHW 492
+ FT ++ Q FL LCH +++PET+ VPIEE+ +W+ HW
Sbjct: 434 LFFTALIAQCFLVSLCHLKYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVYLLWRQHW 493
Query: 493 FWGKYIPD 500
W KY+ D
Sbjct: 494 LWKKYVED 501
|
|
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 228/491 (46%), Positives = 320/491 (65%)
Query: 12 AKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHE 71
+K+++ +T +V + ++AA+GGL+FGYD+GISGGVT+MD FLK+FFP VY ++ + HE
Sbjct: 11 SKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKH-AHE 69
Query: 72 SAYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXX 131
+ YCK+D+Q L LFT GR+ +M + I FL
Sbjct: 70 NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAV 129
Query: 132 XXXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYG 191
MLIIGR++LG GVGF NQ VP++LSE+APA++RG LNI FQ+ +TIGILIAN+VNY
Sbjct: 130 NIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYF 189
Query: 192 TAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNV 251
T+ I +GWR++L A +PA+++ GS + +TP S++ER E K+ L+KIRG +V
Sbjct: 190 TSSIHP-YGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKKIRGVEDV 248
Query: 252 DEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311
DEE++ + A + A+QV P+T +++ RP + L+ FFQQFTGIN IMFYAPVLF+
Sbjct: 249 DEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMFYAPVLFQ 308
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
T+GFG +A+L+SAV+TG +NV++T V +F VDK GRR L L+ V M ICQ ++GI+LA
Sbjct: 309 TVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLVIGIILAK 368
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
+ G TL + A V+ +C YV FAWSWGPLGWL+PSE LE R+ G A+ VS
Sbjct: 369 DLDVTG--TLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFALAVSC 426
Query: 432 NMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEM-NRMWKA 490
NM FTFV+ Q FLSMLC + VPET+ V I++M + +WK
Sbjct: 427 NMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRDSVWKL 486
Query: 491 HWFWGKYIPDE 501
HW+W +++ +E
Sbjct: 487 HWYWKRFMLEE 497
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 227/492 (46%), Positives = 317/492 (64%)
Query: 12 AKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHE 71
A +E +T +V + ++AA+GGL+FGYD+GISGGV++MD FLK+FFP V+ ++ + HE
Sbjct: 10 APAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHV-HE 68
Query: 72 SAYCKFDSQLLTLFTXXXXXXXXXXXXXXXXXTRMYGRKMSMTVGGISFLXXXXXXXXXX 131
+ YCK+D+Q L LFT GR+ +M I FL
Sbjct: 69 NNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAV 128
Query: 132 XXXMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYG 191
MLIIGRL LG GVGF NQ VP++LSE+APA++RG LNI FQ+ +TIGILIAN+VNY
Sbjct: 129 NLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYF 188
Query: 192 TAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNV 251
TA + +GWR++L A +PA+++ GS + +TP S++ER +E K+ L+KIRG ++
Sbjct: 189 TATVHP-YGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVDDI 247
Query: 252 DEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311
++E++ + A + A QV P+ +L+ RP + L+ FQQFTGIN IMFYAPVLF+
Sbjct: 248 NDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVLFQ 307
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
T+GFG++A+L+SAVITG +NV+AT V ++ VD+ GRR L L+ V M ICQ ++GI+LA
Sbjct: 308 TVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIILAK 367
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
G+ G TL + A V+ +C YV FAWSWGPLGWL+PSE LE RSAG A+ VS
Sbjct: 368 DLGVTG--TLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSC 425
Query: 432 NMIFTFVVGQVFLSMLCHXXXXXXXXXXXXXXXXXXXXXYMVPETRNVPIEEMNR-MWKA 490
NM FTFV+ Q FLSMLC + +PET+ + I++M +WK
Sbjct: 426 NMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKP 485
Query: 491 HWFWGKY-IPDE 501
HWFW +Y +P++
Sbjct: 486 HWFWKRYMLPED 497
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.6394 | 0.9689 | 0.9560 | N/A | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3275 | 0.8062 | 0.9102 | yes | no |
| P45598 | ARAE_KLEOX | No assigned EC number | 0.3008 | 0.8333 | 0.9110 | yes | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5555 | 0.9786 | 0.9674 | N/A | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3030 | 0.8352 | 0.9431 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.6035 | 0.9631 | 0.9745 | N/A | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3110 | 0.8294 | 0.9224 | yes | no |
| Q9LT15 | STP10_ARATH | No assigned EC number | 0.6989 | 0.9573 | 0.9610 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 516 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-127 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-107 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-72 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-10 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 6e-10 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 3e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 5e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 5e-04 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 5e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 0.001 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.001 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 377 bits (971), Expect = e-127
Identities = 166/466 (35%), Positives = 262/466 (56%), Gaps = 22/466 (4%)
Query: 27 CLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFT 86
LVAA+GG LFGYD G+ G ++ +F K F C + L L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGA---------CAASTVLSGLIV 52
Query: 87 SSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLG 144
S + L+ S FA + +GRK S+ +G + F+IGA++ G A + MLI+GR+++G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 145 VGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVS 204
+GVG + +VP+Y+SE+AP K+RGAL +Q+ IT GIL+A ++ G K S GWR+
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 205 LALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEA 264
L L VPAIL+ +G FLP++P ++ +G ++EA+ +L K+RG +VD+E Q+ D+ E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 265 AKQVHHPWTNILRGR--YRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLM 322
+ + L R +L M ++ FQQ TGIN I +Y+P +F+T+G +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL--L 290
Query: 323 SAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382
+I GVVN V T +++F VD+FGRR L L G M IC ++G+ L +G G +
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIV- 349
Query: 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQV 442
+ I ++A FA WGP+ W++ SE+ L +R AI + N + F++G +
Sbjct: 350 ------AIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403
Query: 443 FLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMW 488
F + +F FAG + + +FVF+ VPET+ +EE++ ++
Sbjct: 404 FPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = e-107
Identities = 167/474 (35%), Positives = 267/474 (56%), Gaps = 28/474 (5%)
Query: 22 FVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQL 81
V + L+AA+GGL+FGYD G+ GG ++ F F + S L
Sbjct: 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDS------------YSSSL 72
Query: 82 LTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA---AVNIAMLII 138
L S + + + FA ++ +GRK S+ + + F+IGAI+ G A+++ MLI+
Sbjct: 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIV 132
Query: 139 GRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG 198
GR++LG+GVG A+ +VP+YLSE+AP +RGAL +Q+AIT GIL+A G ++
Sbjct: 133 GRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT 192
Query: 199 WGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDL 258
GWR+ L L +PA L+ +G FFLP++P ++ +G V+EA+K L ++RGT D+E D
Sbjct: 193 LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDE 252
Query: 259 YDASEAA-----KQVHHPWTNILR--GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311
+ + + V W ++ R R +L + ++ +FQQFTGIN IM+Y+P +F+
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
G + + + ++I G VN T V++F VD+FGRR L L G M IC ++GI+
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGIL--- 369
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431
G +K + + I ++A FA WGP+ W++ SE+ L +R G +I V+
Sbjct: 370 --GASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 432 NMIFTFVVGQVFLSMLCHFKFG-LFFFFAGFVAVMTVFVFYMVPETRNVPIEEM 484
N + F+VG +F +ML G +F FF G + +FV++ +PET+ +EE+
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 4e-72
Identities = 147/499 (29%), Positives = 244/499 (48%), Gaps = 63/499 (12%)
Query: 21 SFVLVTCLVAAMGGLLFGYDLG-ISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDS 79
S++ LVA +GGLLFGYD ISG V S++ P+ +
Sbjct: 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA--PQNLSESAANS---------- 55
Query: 80 QLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAI-----------ING 128
LL +S + ++ + +GR+ S+ + + F I A+ I
Sbjct: 56 -LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP 114
Query: 129 AAVNIA-MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANL 187
+I R++ G+GVG A+ + P+Y++E+APA +RG L Q AI G L+
Sbjct: 115 DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF 174
Query: 188 VNYGTAKI-SGGW----GWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKML 242
VNY A+ W GWR A A+PA+L + +F+P+TP ++ RG ++A+ +L
Sbjct: 175 VNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234
Query: 243 QKIRGTPNVDEEFQDLYDASEAAKQVHHPW-----TNILRGRYRPQLTMCTLIPFFQQFT 297
+KI G + Q++ + + ++ I+ G ++ FQQF
Sbjct: 235 RKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIG---------VMLSVFQQFV 285
Query: 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQ 357
GINV+++YAP +FKT+G + +L+ +I GV+N+ T++++ +VDKFGR+ L + G +
Sbjct: 286 GINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 345
Query: 358 MFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA 417
M I +G F + G + +L ++ YVAAFA SWGP+ W++ SE+
Sbjct: 346 MAIGMFSLGTA----FYTQAPGIVA------LLSML-FYVAAFAMSWGPVCWVLLSEIFP 394
Query: 418 LEIRSAGQAINVSTNMIFTFVVGQVFLSM------LCHFKFGLFFFFAGFVAVMT-VFVF 470
IR AI V+ I + V F M + HF G ++ G + V+ +F++
Sbjct: 395 NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454
Query: 471 YMVPETRNVPIEEMNRMWK 489
VPET+ +EEM +W+
Sbjct: 455 KFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 62/273 (22%), Positives = 120/273 (43%), Gaps = 14/273 (5%)
Query: 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLI 137
D+ + L S ++ L+ SF ++ +GRK + + + + ++ + N + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 138 IGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISG 197
+ RL++G+G+G V +E P K R + Q+ ++G+++ LV Y
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---- 240
Query: 198 GWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPN--VDEEF 255
WR ++P L + S+F+P++P ++ +G ++EA K+LQ+I + E
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 256 QDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGF 315
L + + + L P L TL FT +Y VL
Sbjct: 299 LSLSLEKDLSSSKKQY--SFLDLFRTPNLRKTTLCLMMLWFT-TAFS-YYGLVLDLGNLG 354
Query: 316 GAEASLMSAVITGVVNVVATLVSVFSVDKFGRR 348
G + I+G+V + A L+++ +D+ GRR
Sbjct: 355 GNI--YLDLFISGLVELPAKLITLLLIDRLGRR 385
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAML 136
+ L S+ L + S A ++ +GR+ + +G + F +G+++ A ++ +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 137 IIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS 196
++GR +LG+G G ++E P K RG F +G L+ L+ ++
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL---LA 147
Query: 197 GGWGWRVSLALAAVPAILMTVGSFFLP 223
GWR + A+ +L+ + FL
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 45/295 (15%), Positives = 108/295 (36%), Gaps = 33/295 (11%)
Query: 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAML 136
+ L ++ L +A A ++ +GR+ + +G + F +G ++ A ++ +L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 137 IIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS 196
++ R++ G+G G +++ P + RG +G + L+ ++
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL---GGLLA 145
Query: 197 GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256
+GWR + + A+ A+L V + L P +R
Sbjct: 146 SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKR------------------------ 181
Query: 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFG 316
+ A++ P + R + L+ ++ Y P+ + +G
Sbjct: 182 -----PKPAEEAPAPLVPAWKLLLRDPVLWL-LLALLLFGFAFFALLTYLPLYQEVLGLS 235
Query: 317 AEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
A + + + G++ + L+ D+ GRR L + + + + ++
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT 290
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 50/273 (18%), Positives = 107/273 (39%), Gaps = 14/273 (5%)
Query: 84 LFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLML 143
LF++ L A A FF + R GR+ + + F + ++ A N+ L+I R +
Sbjct: 57 LFSAGLIGMAFGALFFGPLADR-IGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115
Query: 144 GVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRV 203
G+G+G + +SE AP + RG IG + + + +GWR
Sbjct: 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL---AGWLIPVFGWRS 172
Query: 204 SLALAAV-PAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDAS 262
+ + P +L+ + FLP++ + ++ + + + + + A
Sbjct: 173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIV------NAIAPQMQAEAQSAL 226
Query: 263 EAAKQVHHPWTNILRGRYRPQLTMCTLI---PFFQQFTGINVIMFYAPVLFKTIGFGAEA 319
K ++ + ++ + T++ +F G+ + + P L +GF
Sbjct: 227 PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL 286
Query: 320 SLMSAVITGVVNVVATLVSVFSVDKFGRRVLFL 352
+ + V+ +++ + D+ G RV L
Sbjct: 287 AATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-10
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 83 TLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLM 142
L + L L+ S + ++T +GRK + VG F++ + + NI +LII R +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 143 LGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWR 202
G G FA ++++ P + RG I +G L+ + ++ GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWR 117
Query: 203 VSLALAAVPAIL-MTVGSFFLPDT 225
A+ A+ + +F LP+T
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 20/177 (11%)
Query: 87 SSLYLAALVASFFASVVTRMYGRK----MSMTVGGISFLIGAIINGAAVNIAMLIIGRLM 142
+YL +V +FF + GRK + ++V G + + G + RL+
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQG----YGFFLFCRLL 264
Query: 143 LGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWG-- 200
G G+G A +V Y +E + RG M IG + A + + GW
Sbjct: 265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP-HYGWSFQ 323
Query: 201 ---------WRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGT 248
WRV + + A P + F+P++P LE G DEA +L+ I T
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDT 380
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 16/194 (8%)
Query: 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI-GFGAEASLMSAVITGVVNVVATLVSVF 340
+L + + FF G ++ Y P+ + + G A + + + G+ ++ L+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 341 SVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAF 400
D+ GRR L L G+ + L+ + L V L+ + F
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL------------LVALLLLGFGLGF 281
Query: 401 AWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAG 460
A+ SE+ E R + + + + + +L +G F
Sbjct: 282 AFPALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 461 FVAVMTVFVFYMVP 474
+A++ + ++P
Sbjct: 339 ALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Query: 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMYGRK-MSMTVGGISFLIGAIINGAAVNIAM 135
+ L S L ++ + +++ GR+ + + +G + +G ++ A ++A+
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 136 LIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKI 195
L++ L+LG G+GFA + SE+AP + RG + F ++G + L+ +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLL 324
Query: 196 SGGWGWRVSLALAAVPAILMTVGSFFLP 223
G+ + A A+L + LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 44/268 (16%)
Query: 107 YGRKMSMTV-----GGISFLIGAIINGAAVNIA---MLIIGRLMLGVGVGFANQVVPVYL 158
GRK ++ + G + LIG + + A + I +L++ RL+ G +G +YL
Sbjct: 62 IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL 121
Query: 159 SEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG-----WGWRVSLALAAVPAI 213
+E AP RG Q+ +G+L+A L + + G WGWR+ ++AV
Sbjct: 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAV--- 178
Query: 214 LMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWT 273
L+ +G + R +++E + A E K+ P
Sbjct: 179 LVLIG----------LYLRRNLEETPVFEK-----------------AQEKHKKKRGPIA 211
Query: 274 NILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVV 333
L ++R + + T + + L +T+G A ++L+ +++ ++ +
Sbjct: 212 ETLT-KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFI 270
Query: 334 ATLVSVFSVDKFGRRVLFLEGGVQMFIC 361
+S D+ GRR + + V +
Sbjct: 271 TIPLSGALSDRIGRRPVLIIFTVLAALL 298
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 55/349 (15%), Positives = 114/349 (32%), Gaps = 66/349 (18%)
Query: 91 LAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFA 150
L + + +++T R+ + F++ +++ A + A+L++ R + G+ G
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 151 NQVVPVYLSEMAPAKVRGA----LNIGFQMAITIGILIANLVNYGTAKISGGWGWRVS-L 205
+ + + P RG + G +A +G+ + + +GWR + L
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF-------LGQLFGWRATFL 171
Query: 206 ALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAA 265
A+A + + + + LP P+ I + +
Sbjct: 172 AIAVLALLALLLLWKLLP--PSEISG--------------SLPGPLRTLLR-------LL 208
Query: 266 KQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAV 325
++ + T + F +T + P L GF A + +
Sbjct: 209 RRPGVLLGLL--------ATFLFMTGHFALYT------YIRPFLESVAGFSVSAVSLVLL 254
Query: 326 ITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFD 385
G+ + L+ D+ RR L + L +LAL F
Sbjct: 255 AFGIAGFIGNLLGGRLADRGPRRAL-------IAALLLLALALLALTF----------TG 297
Query: 386 ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMI 434
A L L ++ FA+S G A + ++NV+ +
Sbjct: 298 ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL 346
|
Length = 394 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 52/344 (15%), Positives = 100/344 (29%), Gaps = 33/344 (9%)
Query: 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAI--INGAAVNI 133
+ S+ +V F + +G T+ + G + A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG--ARKTLAVFIVIWGVFTGLQAFAGAY 82
Query: 134 AMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193
L I R++LG + + ++ PA R F A +G +I +
Sbjct: 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142
Query: 194 KISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERGHVDEAKKMLQKIRGTPNVD 252
W+ + + V I+ V F+PD P + T
Sbjct: 143 IHFS---WQWAFIIEGVLGIIWGVLWLKFIPDPP---------------QKAKWLTEEEK 184
Query: 253 EEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV-LFK 311
A + K P ++ + + + F G+ + + P L +
Sbjct: 185 YIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQ 244
Query: 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371
G + A + G+V + ++ D RR L + I LV +L
Sbjct: 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304
Query: 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEV 415
+ + + + F G +GW + S+
Sbjct: 305 ATNY--------VNIPYAALAL-VALGFFGLGAGAIGWALISDN 339
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 95 VASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154
+ + A + R +G + S+ + + G +I + +L +G L+ G G+ N ++
Sbjct: 62 LFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL-GGLPLLFLGTLLAGAGIAVINVLL 120
Query: 155 PVYLSEMAPAKVRG-------ALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLAL 207
P + P +V +L G +A + + +A GWR +L
Sbjct: 121 PSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH----------SGGWRGALGF 170
Query: 208 AAVPAIL 214
A+ A+L
Sbjct: 171 WALLALL 177
|
Length = 395 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 29/283 (10%)
Query: 83 TLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLM 142
++ ++ ++ +GRK M +++ +G ++G A + ML + R +
Sbjct: 56 AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFI 115
Query: 143 LGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWR 202
+G+G+ Y E P ++ + IG +IA Y + +GWR
Sbjct: 116 VGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWR 172
Query: 203 VSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDAS 262
+ + +P +L+ I R E+K+ + + S
Sbjct: 173 AAFFVGLLPVLLV-------------IYIRARAPESKEW---------EEAKLSGKGKHS 210
Query: 263 EAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGF--GAEAS 320
++A V L R + LT+C I F F I P GF G ++
Sbjct: 211 QSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSN 270
Query: 321 LMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQC 363
LM+A G V+ +V D+ G + F G + F+
Sbjct: 271 LMTAAAFG--TVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF 311
|
Length = 426 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 107 YGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKV 166
YGR++ M + F G + G A + I RL++G+G+G Y+ E P +
Sbjct: 74 YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133
Query: 167 RGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDT 225
R + +G ++A V Y G GWR ++ +P I +P+
Sbjct: 134 RNKASGLLISGYAVGAVVAAQV-YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 81 LLTLFTSSLYLAALVASFFASV----VTRMYGRKMSMTVGGISFLIGAIINGAAVNIAML 136
L T+ +SL AA ++ +F + + YGR+++M + + F +G + G A L
Sbjct: 52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTL 111
Query: 137 IIGRLMLGVGVGFANQVVPVYLSEMAPAKVR----GALNIGFQMAITIGILIANLVNYGT 192
I RL++G+G+ Y+ E P +R G L GF +IG ++A V
Sbjct: 112 FIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGF----SIGAVVAAQVY--- 164
Query: 193 AKISGGWGWRVSLALAAVPAIL 214
+ + WGWR + +P I
Sbjct: 165 SLVVPVWGWRALFFIGILPIIF 186
|
Length = 496 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 102/525 (19%), Positives = 189/525 (36%), Gaps = 104/525 (19%)
Query: 26 TCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLF 85
++A +G YDL VT M VY H
Sbjct: 17 AIVIAGVGFFTDSYDLFCISLVTKM-------LGYVYY------HGKGPLPSSVSAAVNG 63
Query: 86 TSSL--YLAALVASFFASVVTR--MYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIG-R 140
++S+ L + A + R +YG ++ + + + G + ++ + R
Sbjct: 64 SASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIA-TVASGLSPGSSPKSVMATLCFWR 122
Query: 141 LMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT-IGILIANLVNY--------- 190
LGVG+G + + SE A K RGA+ + A+ GIL +V
Sbjct: 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAM-MAAVFAMQGFGILAGAIVALIVLAGFKHS 181
Query: 191 -----------GTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP--NSILERGHVDE 237
G+ + + WR+ + AVPA+L +P+TP + + +
Sbjct: 182 LEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQA 241
Query: 238 AKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILR--GRYR-------PQLTMCT 288
A M ++ + + ++ AS A + W++ ++R +
Sbjct: 242 ASDMSAVLQVKIEAEPD--EVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL 299
Query: 289 L-IPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAV----ITGVVNVVATL------- 336
L I F+ G+N+ V+ IG+ A+ +A T V N++ L
Sbjct: 300 LDIAFY----GVNL---NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY 352
Query: 337 -VSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICA 395
V+VF VD GR+ + L G F ++ +L + ++++
Sbjct: 353 WVTVFLVDIIGRKPIQLMG----FFILTVLFFVLGFAYNHLSTHGF------LAIYVLAQ 402
Query: 396 YVAAFAWSWGP--LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML------ 447
+ A F GP ++VP EV RS I+ ++ ++GQ L
Sbjct: 403 FFANF----GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGA-IIGQFGFLYLAQHGDP 457
Query: 448 ------CHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNR 486
+ + FA F+ + +F ++PET+ +EE++
Sbjct: 458 TKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 85 FTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLG 144
+++ +YL V +F R++G K +M +GGI ++G + ++ ++ G +
Sbjct: 57 YSALVYLLTSVGWWFGD---RVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIA 113
Query: 145 VGVGF-----ANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGW 199
VG G ++ V +Y P + G + F M+I IG I+ L+ I+ +
Sbjct: 114 VGSGLFKANPSSMVGKLYERGDMP-RRDGGFTL-FYMSINIGSFISPLL---AGVIAENY 168
Query: 200 GWRVSLALAAVPAIL----MTVGSFFLPDTP 226
G+ V LAAV ++ G L D
Sbjct: 169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.48 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.47 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.45 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.43 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.43 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.41 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.39 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.38 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.38 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.36 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.35 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.34 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.34 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.33 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.33 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.33 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.33 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.31 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.29 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.28 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.28 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.28 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.27 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.27 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.27 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.27 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.26 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.25 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.24 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.23 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.22 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.22 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.22 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.22 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.22 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.19 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.17 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.17 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.16 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.15 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.13 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.12 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.11 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.11 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.08 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.08 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.07 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.05 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.04 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.04 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.02 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.01 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.0 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.99 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.99 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.94 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.93 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.89 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.88 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.87 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.86 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.83 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.8 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.7 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.68 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.68 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.63 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.63 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.6 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.57 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.54 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.5 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.45 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.35 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.32 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.3 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.26 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.26 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.23 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.16 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.0 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.99 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.94 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.88 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.76 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.71 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.65 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.61 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.58 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.51 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.44 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.3 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.12 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.03 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.69 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.6 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.33 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.9 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.8 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.5 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.84 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.19 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.19 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.9 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 93.16 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.51 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.25 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.22 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.26 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 87.99 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 82.9 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.38 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=363.67 Aligned_cols=463 Identities=27% Similarity=0.515 Sum_probs=398.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHH
Q 010185 16 EGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALV 95 (516)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i 95 (516)
+.+++++...+++.+++++|-+||+.+.++.. ....++|.++.+.++++.+..++.+ +...+.+.+++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~~---~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDSTL---DLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999998755 5778889888888888655544333 24478899999999999
Q ss_pred HHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHH
Q 010185 96 ASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNI 172 (516)
Q Consensus 96 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 172 (516)
|+++.|+++||+|||..+.++.++..++.++..++ +++++++++|++.|+..|........++.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 99999999999999999999999999888888765 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHh-cCCHHHHHHHHHHHhCCCCc
Q 010185 173 GFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILE-RGHVDEAKKMLQKIRGTPNV 251 (516)
Q Consensus 173 ~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (516)
..+.+..+|.+++..++.--. ..++..|++.+.+..+++++..+...++||||||+.. +++.+||++.++..++.++.
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 999999999999977753211 2233479999999999999999999999999999998 89999999999999999876
Q ss_pred HHHHHHHHHHHHHh---hhccCchhhhhccC-CcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHH
Q 010185 252 DEEFQDLYDASEAA---KQVHHPWTNILRGR-YRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVIT 327 (516)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 327 (516)
+++.++..++.+++ ++++.++.++++++ .++...+.+.+....++.+.+...+|...++++.|++.+++.+.....
T Consensus 235 ~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~ 314 (485)
T KOG0569|consen 235 EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGI 314 (485)
T ss_pred hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66655544443333 22456788888764 455567777888888999999999999999999999999999999999
Q ss_pred HHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccc
Q 010185 328 GVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPL 407 (516)
Q Consensus 328 ~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (516)
+....+.++++.++.||+|||++++.+..++.+..+++.......... .+...+..+.+.+.+...++.+.+|+
T Consensus 315 g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~------~~~~~y~~i~~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 315 GIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF------GSWLSYLCIAAIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhhhcCCCch
Confidence 999999999999999999999999999999999998887765543111 01223345778888899999999999
Q ss_pred cceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 010185 408 GWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRM 487 (516)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (516)
.+.+.+|++|++.|+.++++....+++..++....+..+.+..|...++.+.+.+.+..+..++.+||||+|+.+|+.++
T Consensus 389 ~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred hHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999887
Q ss_pred HhcC
Q 010185 488 WKAH 491 (516)
Q Consensus 488 ~~~~ 491 (516)
.+++
T Consensus 469 ~~~~ 472 (485)
T KOG0569|consen 469 LEKR 472 (485)
T ss_pred HHhC
Confidence 7766
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=351.70 Aligned_cols=449 Identities=30% Similarity=0.548 Sum_probs=333.9
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
...+++..++++++++.+.++||..++++.. |.+.++|.+ ...+++++++.+.+++.+++.++..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~s~~~ig~~~~~ 72 (479)
T PRK10077 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVA----------PQNLSESAANSLLGFCVASALIGCIIGG 72 (479)
T ss_pred ccchHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhcc----------cccccccCChhHHHHHHHHHHHHHHHHH
Confidence 3456677788888899999999999998765 667777632 2345568899999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc------------hhhhHHHHHHHhhhhcccccccchhhhhhccCCcC
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAA------------VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAK 165 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 165 (516)
+++|+++||+|||++++++.+++.++.++++++ ++++.++++|+++|++.|...+...++++|++|++
T Consensus 73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 999999999999999999999999999888763 23567889999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhcc-----ccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHH
Q 010185 166 VRGALNIGFQMAITIGILIANLVNYGTAK-----ISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKK 240 (516)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-----~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~ 240 (516)
+|++++++.+.+..+|.++++.+++.+.. ..+.++||+.|++.+++.++..+..+++||+|+++..+++.+++++
T Consensus 153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 232 (479)
T PRK10077 153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEG 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHH
Confidence 99999999999999999999888765542 1234699999999888887777667779999999988888888777
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhH
Q 010185 241 MLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEAS 320 (516)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 320 (516)
..++..+.++.+...++..+....++. .....+. ..............+....+++...++.|.+.++.|.+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~ 308 (479)
T PRK10077 233 ILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308 (479)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH
Confidence 777665544322222222111110010 0011111 001111222222333344445566778899888899988888
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhh
Q 010185 321 LMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAF 400 (516)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (516)
.+.....++..+++.++.++++||+|||+.+..+..+++++.+++...... +.........++.+..++
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~ 377 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSMLFYVAAF 377 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-----------CcccHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999998888887776543211 111223333444455555
Q ss_pred hcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHH------hhcch-hhHHHHHHHHHHHHHHHhhcc
Q 010185 401 AWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML------CHFKF-GLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~------~~~g~-~~~~~~~~~~~~~~~~~~~~~ 473 (516)
+..+.+..+.++.|.+|++.|+++.|+.+...++++++++.+++.+. +..++ ..+..+++.+.+..++.+++.
T Consensus 378 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
T PRK10077 378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 457 (479)
T ss_pred hccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence 55556777888999999999999999999999999999988877554 34443 345555556666666666778
Q ss_pred cCCCCCCHHHHHHHHhcCcc
Q 010185 474 PETRNVPIEEMNRMWKAHWF 493 (516)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~ 493 (516)
||+|+++.+|.++..+++.+
T Consensus 458 ~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 458 PETKGKTLEEMEALWEPETK 477 (479)
T ss_pred ccCCCCCHHHHHHHHhhccc
Confidence 99999998888777655544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=358.76 Aligned_cols=441 Identities=20% Similarity=0.237 Sum_probs=317.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHH
Q 010185 15 YEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAAL 94 (516)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~ 94 (516)
++.+..++++.++++++++.+.++||...++.+. |.+.++++ ..+.+.++.+.+++.+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ 70 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTL 70 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999988775 43333321 01124567788999999999999
Q ss_pred HHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHhhhhcccccccchhhhhhccCCcCccc
Q 010185 95 VASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVN------IAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRG 168 (516)
Q Consensus 95 i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 168 (516)
++++++|+++||+|||+++.++.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|+
T Consensus 71 ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg 150 (502)
T TIGR00887 71 AGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG 150 (502)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999998876 789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc--------------------cCCcchhHHHHHhHHHHHHHHHhhccCCCChHH
Q 010185 169 ALNIGFQMAITIGILIANLVNYGTAKI--------------------SGGWGWRVSLALAAVPAILMTVGSFFLPDTPNS 228 (516)
Q Consensus 169 ~~~~~~~~~~~~G~~i~~~i~~~~~~~--------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 228 (516)
+++++...+..+|.++++.++..+... ..+++||++|.+.++++++..+..+++||||||
T Consensus 151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999887654321 112489999999988888877777889999999
Q ss_pred HHhcCCHH-HHHHHHHHHhCCCCcH--HHHHHHHHHHHHhhhccCchhhhhccCCcc---hHHHHHHHHHHHHhhhhHHH
Q 010185 229 ILERGHVD-EAKKMLQKIRGTPNVD--EEFQDLYDASEAAKQVHHPWTNILRGRYRP---QLTMCTLIPFFQQFTGINVI 302 (516)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 302 (516)
+..+++.+ ++.+.+.+..+.+..+ ++.++.+ ++++..+.+++++++....+ +..+.....++.....++..
T Consensus 231 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 307 (502)
T TIGR00887 231 TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAS---TAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307 (502)
T ss_pred HHHhCcchHHHHHHHHHHhccccccCcccccchh---ccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 98877764 4565555554332111 1111111 01111123566776532222 22232233333333344556
Q ss_pred HHhHHHHHHhcCCCchhHHH------------HHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHH
Q 010185 303 MFYAPVLFKTIGFGAEASLM------------SAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLA 370 (516)
Q Consensus 303 ~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 370 (516)
..+.|.++++.|++...++. ......++.+++.++.++++||+|||+.+..+..++.++.+++.....
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888887543211 233445567778899999999999999988887777777665554321
Q ss_pred HhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 371 LKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
. ......+.........+..+..++.+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.+..
T Consensus 388 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 388 H------------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred h------------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 0 0011111222222233345556777888899999999999999999999999999999999998743
Q ss_pred ----------ch-hhHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Q 010185 451 ----------KF-GLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNR 486 (516)
Q Consensus 451 ----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (516)
+. ..++++++++++..+ ..+++||+++++.||+++
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELSG 501 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhhC
Confidence 22 345555555555444 456779999998877643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=355.72 Aligned_cols=424 Identities=18% Similarity=0.197 Sum_probs=321.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHH
Q 010185 19 VTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASF 98 (516)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~ 98 (516)
..+++|.++++++++.+.+++|...++.+. |.+.+++ +++..+.+++.+++.++.+++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~l 220 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVL--PSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAF 220 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999999999999998887664 6555555 88999999999999999999999
Q ss_pred hhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHH
Q 010185 99 FASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAI 178 (516)
Q Consensus 99 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 178 (516)
++|+++||+|||++++++++++++++++++++++++.++++|++.|++.++..++..+++.|++|+++|++.++++..++
T Consensus 221 i~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~ 300 (742)
T TIGR01299 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300 (742)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc----------CCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCC
Q 010185 179 TIGILIANLVNYGTAKIS----------GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGT 248 (516)
Q Consensus 179 ~~G~~i~~~i~~~~~~~~----------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 248 (516)
.+|.++++.++..+.... ...+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...
T Consensus 301 ~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~ 380 (742)
T TIGR01299 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDT 380 (742)
T ss_pred HHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcC
Confidence 999999998776554211 1247999999998888887777778999999999999999999999998766
Q ss_pred CCc----HH-HH--HHHHHHHHH------hhhcc------------------CchhhhhccCCcchHHHHHHHHHHHHhh
Q 010185 249 PNV----DE-EF--QDLYDASEA------AKQVH------------------HPWTNILRGRYRPQLTMCTLIPFFQQFT 297 (516)
Q Consensus 249 ~~~----~~-~~--~~~~~~~~~------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (516)
+.. +. .. +..+..... +++.+ .+++++++.+.+++ .+.+.+.++....
T Consensus 381 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-tl~l~~~wf~~~~ 459 (742)
T TIGR01299 381 NMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREI-TIKLMGVWFTLSF 459 (742)
T ss_pred CCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHH-HHHHHHHHHHHHH
Confidence 532 11 10 011110000 00000 12445555544444 4444555677777
Q ss_pred hhHHHHHhHHHHHHhc------------------------------------------CC-----C--------------
Q 010185 298 GINVIMFYAPVLFKTI------------------------------------------GF-----G-------------- 316 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~------------------------------------------g~-----s-------------- 316 (516)
.++.+..|.|.++++. |+ +
T Consensus 460 ~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (742)
T TIGR01299 460 GYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDV 539 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeec
Confidence 8889999999775431 00 0
Q ss_pred ------------------------------------------------------chhHHHHHHHHHHHHHHHhHhHhhhh
Q 010185 317 ------------------------------------------------------AEASLMSAVITGVVNVVATLVSVFSV 342 (516)
Q Consensus 317 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~ 342 (516)
.........+.+++.+++.+++++++
T Consensus 540 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~ 619 (742)
T TIGR01299 540 TSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLM 619 (742)
T ss_pred cccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123445677789999999999999
Q ss_pred cccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhh
Q 010185 343 DKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRS 422 (516)
Q Consensus 343 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 422 (516)
||+|||+++..+.++.+++.+++.+. .+....++..+++. ++..+..+....+++|++|++.|+
T Consensus 620 Dr~GRr~~l~~~~~lsai~~ll~~~~---------------~s~~~ll~~~~l~g-~~~~~~~~~~~a~~aEl~Pt~~Rg 683 (742)
T TIGR01299 620 DKIGRLRMLAGSMVLSCISCFFLSFG---------------NSESAMIALLCLFG-GLSIAAWNALDVLTVELYPSDKRA 683 (742)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999998888888877766552 12222222223333 333344566778889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCCCCC
Q 010185 423 AGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVP 480 (516)
Q Consensus 423 ~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (516)
+++|+.+...++|++++|++.+.+.+.. ....+.+.+++.+++.++.+++||++++.
T Consensus 684 ta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 684 TAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999999999887754 33344444444444555555679888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=332.41 Aligned_cols=458 Identities=36% Similarity=0.669 Sum_probs=375.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCc--hhHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDS--QLLTLFTSSLYLAAL 94 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~ 94 (516)
...............++.+..|++ +..+.........+++..... ...+. .+.+++.+.+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~s~~~lga~ 103 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYD------------LSTGEYSVRQGLLTSILNLGAL 103 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhcccccc------------cccchhHHHHHHHHHHHHHHHH
Confidence 345567788888899999999998 433333333444444422111 11122 567999999999999
Q ss_pred HHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHH
Q 010185 95 VASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGF 174 (516)
Q Consensus 95 i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 174 (516)
+++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.+++|..|++.||...+..
T Consensus 104 ~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~ 183 (513)
T KOG0254|consen 104 VGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLY 183 (513)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhC--CCCcH
Q 010185 175 QMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRG--TPNVD 252 (516)
Q Consensus 175 ~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~--~~~~~ 252 (516)
+....+|..++..++...... . ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++++ +.+.+
T Consensus 184 ~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 184 QLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchH
Confidence 999999999997777766544 2 5899999999999999888877799999999999999999999999999 34444
Q ss_pred HHHHHHHHHHHHhh---hccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHH
Q 010185 253 EEFQDLYDASEAAK---QVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGV 329 (516)
Q Consensus 253 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (516)
.+.+..+.....+. +.+..+.+++++..+++..+...+..+.+..+++...+|.+.+++..|.+... .......++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~ 340 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGV 340 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHH
Confidence 44444442211111 11224667777667777888888989999999999999999999998887655 667777888
Q ss_pred HHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccc
Q 010185 330 VNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGW 409 (516)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (516)
..+++..++..+.||+|||+.++.+...+.++.++++.......... .......+..+...+++...+..++.++.+
T Consensus 341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w 417 (513)
T KOG0254|consen 341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP---NSSKGAGWLAIVFLCLFIFSFAIGWGPVPW 417 (513)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC---CcccchhHHHHHHHHHHHHHHhcccccchh
Confidence 88899999999999999999999999999999999887654422110 012245677788888899999999999999
Q ss_pred eeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHH-HHhhcccCCCCCCHHHHHHH
Q 010185 410 LVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTV-FVFYMVPETRNVPIEEMNRM 487 (516)
Q Consensus 410 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 487 (516)
.+.+|.+|.+.|+++.++....+++.+.+....+..+.+..+ ...++.+.+++.+... ..++++||+|+++.||+++.
T Consensus 418 ~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~ 497 (513)
T KOG0254|consen 418 VIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINEL 497 (513)
T ss_pred hhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHH
Confidence 999999999999999999999999999999888888777766 6777778888877777 78889999999999999987
Q ss_pred HhcCcc
Q 010185 488 WKAHWF 493 (516)
Q Consensus 488 ~~~~~~ 493 (516)
+.+...
T Consensus 498 ~~~~~~ 503 (513)
T KOG0254|consen 498 FEEGIK 503 (513)
T ss_pred HHcCCc
Confidence 765543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=323.46 Aligned_cols=445 Identities=37% Similarity=0.689 Sum_probs=324.9
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVA 96 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (516)
.+..|+.+...+++.++.+..+++...++... +....++.-+ .+.+-+.+..+.+++.+++.++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (481)
T TIGR00879 20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFT----------SANSDSYSSSLWGLVVSIFLVGGFIG 87 (481)
T ss_pred CcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcC----------CcccCCCChhHHHHHHHHHHHHHHHH
Confidence 34456677777778888899999999887765 4344443111 01122467899999999999999999
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHH
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIG 173 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 173 (516)
++++|+++||+|||+++.++.++++++.+++.++ .+++.++++|+++|++.+...+...+++.|++|+++|++++++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL 167 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence 9999999999999999999999999999999654 4456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---hhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCC
Q 010185 174 FQMAITIGILIANLVN---YGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPN 250 (516)
Q Consensus 174 ~~~~~~~G~~i~~~i~---~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 250 (516)
...+..+|.++++.++ .... +..+||+.|++.++..++..+..+++||+|+++..+++.++..+..++....++
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG 244 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC
Confidence 9999999999999997 3332 345999999997777776666677799999888777777666655555443332
Q ss_pred cHHHHHHH----HHH-HHHhhhccCchhhhhccCC--cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHH
Q 010185 251 VDEEFQDL----YDA-SEAAKQVHHPWTNILRGRY--RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMS 323 (516)
Q Consensus 251 ~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 323 (516)
.+.+..+. ... ..+.+..+..+.+.++..+ .++.++...+.++..........++.|++.++.|++..+.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 324 (481)
T TIGR00879 245 EDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLV 324 (481)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHH
Confidence 22111110 000 0111111222444443222 3445555555555555556667788899999999999888999
Q ss_pred HHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcC
Q 010185 324 AVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWS 403 (516)
Q Consensus 324 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (516)
.....++.+++.++.+++.||++||+.+..+..+.+++.+++......... .......+..+....++..+++.+
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 399 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT-----GSSKSSGNVAIVFILLFIAFFAMG 399 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC-----CcccchhHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999988877777776666543211000 000011334444555556666666
Q ss_pred cccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh-HHHHHHHHHHHHHHHhhcccCCCCCCH
Q 010185 404 WGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL-FFFFAGFVAVMTVFVFYMVPETRNVPI 481 (516)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (516)
..+....+..|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++.. ++..++++++.+++.+++.+|+++++.
T Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 400 WGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred ccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 677777888899999999999999999999999999999999999877654 444555555555555666777766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.17 Aligned_cols=402 Identities=16% Similarity=0.238 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCc--hhHHH--HHHHHHHHHHHHHHhh
Q 010185 25 VTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDS--QLLTL--FTSSLYLAALVASFFA 100 (516)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~l~~~i~~~~~ 100 (516)
.+...++++.++++||..++++.. |.+.++|+++. ++ ...+. +.++.++++.++++++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~ig~~~~ 77 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA----------------DPSVQMIAALATFSVPFLIRPLGGLFF 77 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999988775 66677775432 22 11222 2578889999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhH--------HHHHHHhhhhcccccccchhhhhhccCCcCccchhHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAM--------LIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNI 172 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 172 (516)
|+++||+|||+++.+++++++++++++++++|++. ++++|+++|++.|+.++...+++.|++|+++|+++.+
T Consensus 78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 99999999999999999999999999999999875 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-----cCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhC
Q 010185 173 GFQMAITIGILIANLVNYGTAKI-----SGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRG 247 (516)
Q Consensus 173 ~~~~~~~~G~~i~~~i~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 247 (516)
+...+..+|.++++.++..+... ..++|||+.|++.++++++..++...+||+|+|...+++.++..+
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------- 230 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------
Confidence 99999989988888765544321 124699999999887766655555669999987543221111000
Q ss_pred CCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHH
Q 010185 248 TPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVI 326 (516)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~ 326 (516)
....++++.++++++++ .++...... ...+.....++....|.|.+++ .+|++..+..+....
T Consensus 231 --------------~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 294 (490)
T PRK10642 231 --------------EGLQDGPKVSFKEIATK-HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA 294 (490)
T ss_pred --------------ccccccccCCHHHHHHH-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00001123345555543 222223222 2223333455667778888775 469988888888888
Q ss_pred HHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccc
Q 010185 327 TGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGP 406 (516)
Q Consensus 327 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
..++.+++.++.|+++||+|||+.+..+.+...+....+..... ............+...+.+.. ..
T Consensus 295 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~-~g 361 (490)
T PRK10642 295 IMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN------------SNVIGLIFAGLLMLAVILNCF-TG 361 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHH-HH
Confidence 88899999999999999999999887766544333322211110 011112222222222222212 22
Q ss_pred ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHHhhcccCCCCCC
Q 010185 407 LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFVFYMVPETRNVP 480 (516)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (516)
....+..|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ +.....+..+..+++++..+++||++++.
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 334555689999999999998777778888999999999887654 33233233334444444555668776543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=293.35 Aligned_cols=376 Identities=15% Similarity=0.181 Sum_probs=298.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+..+..++...++.|..+.+..+....+ |++.++| |+|..+.|++.|.|.+++.+++|+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL--p~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l 68 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL--PPIAADL------------------GVSEGAAGQLITAYALGVALGAPLL 68 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777888888887776665 7777776 9999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
..++||+.||++++..+.++.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..+
T Consensus 69 ~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 69 ALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148 (394)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHH
Q 010185 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLY 259 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (516)
+.++|.++|.++.+.. |||..|++.++++++..+..+. +| |+
T Consensus 149 A~v~GvPLGt~ig~~~---GWR~~F~~ia~l~ll~~~~~~~~lP--~~-------------------------------- 191 (394)
T COG2814 149 ATVLGVPLGTFLGQLF---GWRATFLAIAVLALLALLLLWKLLP--PS-------------------------------- 191 (394)
T ss_pred HHHHhccHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhCC--Cc--------------------------------
Confidence 9999999999998765 9999999999999887766555 88 20
Q ss_pred HHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHh
Q 010185 260 DASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSV 339 (516)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 339 (516)
+..++.+.+.++.++..++++.+.......+.....+..+++..|++.+..|++.+..++....++++.++|..+.|
T Consensus 192 ---~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gG 268 (394)
T COG2814 192 ---EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGG 268 (394)
T ss_pred ---cCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHh
Confidence 00111223333444444456666666666666666666667777777777899999999999999999999999999
Q ss_pred hhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCc-ccccceeecccCch
Q 010185 340 FSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSW-GPLGWLVPSEVCAL 418 (516)
Q Consensus 340 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ 418 (516)
++.|| +.|+.+.....+.++.++.+.+.. .+.+..+....+ .++.... ........++.. +
T Consensus 269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~~~~~~~~~~~~--wg~a~~~~~~~~~~~~a~~~-p 330 (394)
T COG2814 269 RLADR-GPRRALIAALLLLALALLALTFTG--------------ASPALALALLFL--WGFAFSPALQGLQTRLARLA-P 330 (394)
T ss_pred hhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHH--HHHHhhhhhhHHHHHhcccC-C
Confidence 99999 888888888777777777766531 222333333333 2222221 122233344433 4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhccc
Q 010185 419 EIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 419 ~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
+.++.+.+++....++|..+|..+.|.++|+.|+......+++..+.+....+...
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999987777777777777766655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=370.49 Aligned_cols=442 Identities=34% Similarity=0.714 Sum_probs=351.3
Q ss_pred HHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc
Q 010185 29 VAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYG 108 (516)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 108 (516)
++.++.+.+|||...++...........+..+.. ..+.+.++.+.+++.+...+|..+|++++|+++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS---------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccc---------cccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 4566779999999998877655443344432221 1112225678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhch---hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHH
Q 010185 109 RKMSMTVGGISFLIGAIINGAAV---NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIA 185 (516)
Q Consensus 109 rr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 185 (516)
||+++.++.++..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.++.+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Q 010185 186 NLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAA 265 (516)
Q Consensus 186 ~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (516)
..++.......++.+||+.+++.++++++..+...++||||||+..+++.+|+++.+++.++.+..+++.++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES 234 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence 98877665544445799999999999988877778899999999999999999999999776655555554444444443
Q ss_pred hhccCchhhhhccCC-cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc
Q 010185 266 KQVHHPWTNILRGRY-RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDK 344 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (516)
++.+.+++++++.+. +++......+..+....+......+.+.+.++.+.+.. ........+...++.+++.++.||
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 235 QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred cccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 333466777877644 45566666666666666767778888888888877766 344456667777888888899999
Q ss_pred cCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhh
Q 010185 345 FGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAG 424 (516)
Q Consensus 345 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (516)
+|||+.+..+..++.++.+.+....... . ..+.......+....++...+..++.++.+.+..|.+|++.|+++
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~ 386 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLILGIIFFLG--V----SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTG 386 (451)
T ss_pred cccccccccccccccccccccccccccc--c----ccccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 9999999998888887777765111000 0 000012334444555555667777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 010185 425 QAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRM 487 (516)
Q Consensus 425 ~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (516)
.|+....+++++++.+.+.+.+.+..+ ...+.++++++.+..++.++++||+++++.+|++++
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999999999999998888877 777888888888888888999999999999998875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=305.02 Aligned_cols=397 Identities=19% Similarity=0.185 Sum_probs=266.9
Q ss_pred cCCcCCCCCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhH---HHHH
Q 010185 10 GGAKNYEGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLL---TLFT 86 (516)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~ 86 (516)
.|.+... ..+++++..+..++++.++++||..+++... |.+.++++++ +.+..+. +.+.
T Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~---------------~~~~~~~~~~~~~~ 69 (432)
T PRK10406 8 ADSKLTS-SDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS---------------GNTTTQLLQTAGVF 69 (432)
T ss_pred cccccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC---------------CCchHHHHHHHHHH
Confidence 3433333 4455566677778889999999999987665 6777777543 2234433 3444
Q ss_pred HHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHhhhhcccccccchhhhh
Q 010185 87 SSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIA--------MLIIGRLMLGVGVGFANQVVPVYL 158 (516)
Q Consensus 87 s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i 158 (516)
+..+++..++++++|+++||+|||+++..++++++++++++++++++. .++++|+++|++.|..++...+++
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 149 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM 149 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence 555566669999999999999999999999999999999999998874 689999999999999999999999
Q ss_pred hccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcccc-----CCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcC
Q 010185 159 SEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS-----GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERG 233 (516)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 233 (516)
.|++|+++|+++.++...+...|.++++.++..+.... ..+|||++|++.++++++.......+||+|++..+
T Consensus 150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-- 227 (432)
T PRK10406 150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR-- 227 (432)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--
Confidence 99999999999999999998899888887765544321 24699999999888887766555558887732100
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-h
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-T 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (516)
+++++.++++++++ ++.+.......+.....++.+..|.|.+++ .
T Consensus 228 -------------------------------~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 273 (432)
T PRK10406 228 -------------------------------ALKEAGSLKGLWRN---RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT 273 (432)
T ss_pred -------------------------------hhcccccHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00012235555542 233332222222223344556677887765 4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
+|++..+.+.......+...++..+.|+++||++||+.+.....+..+....+.... . ........+..
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~ 342 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-Q----------NVSSPYAAFGL 342 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-H----------cCCcHHHHHHH
Confidence 799988888888888888888899999999999999887665554333322221110 0 00111111111
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHHh
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMI-FTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFVF 470 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 470 (516)
..+.....+ ...+....+.+|.+|++.|+++.|+.+..+++ .+...|.+.+.+ +..+ +...+.+.++..+++.+..
T Consensus 343 ~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 343 VMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence 111111111 11234556778999999999999999988765 344567766644 5555 4444455555555555444
Q ss_pred hcc
Q 010185 471 YMV 473 (516)
Q Consensus 471 ~~~ 473 (516)
+++
T Consensus 421 ~~l 423 (432)
T PRK10406 421 LML 423 (432)
T ss_pred HHh
Confidence 443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=317.25 Aligned_cols=385 Identities=18% Similarity=0.297 Sum_probs=281.5
Q ss_pred CCCCccccCC---chhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhh
Q 010185 69 GHESAYCKFD---SQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGV 145 (516)
Q Consensus 69 ~~~~~~~~~s---~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 145 (516)
+...+|+|++ +.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|+
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~ 192 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3456777998 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCC
Q 010185 146 GVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDT 225 (516)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 225 (516)
+.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+..+++||+
T Consensus 193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999987664 59999999999888877777779999
Q ss_pred hHHHHhcCCHHHHHHHHHHHhCCCCcH--HHHHHHH-HHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHH
Q 010185 226 PNSILERGHVDEAKKMLQKIRGTPNVD--EEFQDLY-DASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVI 302 (516)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (516)
|+|+..+++.+++.+.+++....+..+ .+..... ++...+++++.+++++++++..+...+...+.++.....+
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 343 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY--- 343 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999888877665433211 1111111 1111111123466777765554444444333333222222
Q ss_pred HHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 303 MFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 303 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
+..+......+.+. .......++..+++.++.+++.||+|||+.+..+.++.+++.+++....
T Consensus 344 -~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~------------- 406 (505)
T TIGR00898 344 -YGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP------------- 406 (505)
T ss_pred -HHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 22233333444442 3445566788889999999999999999999888887777766655421
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHH
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFV 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (516)
....+.......+...+ .....+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+...+..++++++..
T Consensus 407 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 407 VDLYFLRTALAVLGKFG-ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLA 484 (505)
T ss_pred CCchHHHHHHHHHHHHH-HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHH
Confidence 11112222222222222 22334566678889999999999999999999999999999998 44433344445555444
Q ss_pred HHHHHHHhhcccCCCCCCHH
Q 010185 463 AVMTVFVFYMVPETRNVPIE 482 (516)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~ 482 (516)
++. .+..+++||+++++++
T Consensus 485 ~~~-~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 485 LLA-GILTLFLPETKGVPLP 503 (505)
T ss_pred HHH-HHHHHcCcCCCCCCCC
Confidence 444 4445677888887654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=288.90 Aligned_cols=402 Identities=15% Similarity=0.116 Sum_probs=300.4
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVA 96 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (516)
...+++++-+.+.+.++...+.+..-.++.+ +|.++++. ++|.+|.|++.+++.++|.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~s 80 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIEDG------------------GLSKTQLGILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999998888888887755 36666665 789999999999999999999
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHH
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQM 176 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 176 (516)
.++.|.++||.+.|+.+.+++++.++..++++++++.+.+.++.++.|..+|...|++...++.|+|++|||+..+++++
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHH
Q 010185 177 AITIGILIANLVN--YGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253 (516)
Q Consensus 177 ~~~~G~~i~~~i~--~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (516)
+.++|..+.|++. +.+. .+.+||..|++.++++++..+..++ .+|+|...- -+..++
T Consensus 161 shNiGGal~~~~~~la~~~---~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-----------------LP~ie~ 220 (448)
T COG2271 161 SHNIGGALAPLVALLAFFA---FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG-----------------LPPIEE 220 (448)
T ss_pred hhhcccchHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC-----------------CCCHHH
Confidence 9999999999987 4444 3349999999999998887766555 888883211 111111
Q ss_pred HHHHHHHH-HHHhhhccCchhh-hhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHH
Q 010185 254 EFQDLYDA-SEAAKQVHHPWTN-ILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVV 330 (516)
Q Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 330 (516)
..++..+. .++++.+..+.++ +++.-.+++..+.+++........-+.+..|.|.++.+ .|++...+.+..+.+-.+
T Consensus 221 ~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~a 300 (448)
T COG2271 221 YRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVA 300 (448)
T ss_pred hhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11111111 1111111133333 33444455566777776777777788899999977765 799999999999999999
Q ss_pred HHHHhHhHhhhhccc--CCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccc
Q 010185 331 NVVATLVSVFSVDKF--GRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLG 408 (516)
Q Consensus 331 ~~~~~~~~g~l~d~~--g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (516)
+++|++++|+++||+ |||....+.+.+.....++.... .+..+...........+++-.+...+.
T Consensus 301 gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~-------------~~~~~~~l~~~~l~~iGf~IyGPqmLi 367 (448)
T COG2271 301 GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL-------------APNGSYLLDAILLFIIGFLIYGPQMLI 367 (448)
T ss_pred hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc-------------CCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999997 56655544333333222222221 111223333333333333333333344
Q ss_pred ceeecccCchhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 409 WLVPSEVCALEIRSAGQAINVSTNMI-FTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 409 ~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
-....|..|++..|++.|+...+.++ |...+....|++.|.+||...+++..++.+.+.+.+.
T Consensus 368 Gl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 368 GLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred HHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 55667999999999999999999999 9999999999999998886666655555555554443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=301.28 Aligned_cols=397 Identities=15% Similarity=0.134 Sum_probs=274.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+.+|....+++++.+.+++|....+... |.+.++ +|++..+.+++.+++.+++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~------------------~~~s~~~~g~~~s~~~~~~~~~~~~~ 63 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAG--LTMGKD------------------LGLSATMFGLAATLFYAAYVICGIPS 63 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhh------------------cCCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456677778888889999999887664 444444 49999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
|+++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+.++
T Consensus 64 g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 143 (412)
T TIGR02332 64 NIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV 143 (412)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccc---cCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 181 GILIANLVNYGTAKI---SGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 181 G~~i~~~i~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
|.++++++++.+... .+..|||+.|++.++++++..++ .+++||+|+.... -..++.+...+..+......++.+
T Consensus 144 g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 222 (412)
T TIGR02332 144 TMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPE 222 (412)
T ss_pred HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccccccccc
Confidence 999999998876532 23459999999988887765544 4558998842100 001111111111110000000000
Q ss_pred HHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc--CCCchhHHHHHHHHHHHHHHH
Q 010185 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI--GFGAEASLMSAVITGVVNVVA 334 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~ 334 (516)
+..++.+...+..++....+. ++...+.+++....++.+..|.|.+++++ +++..+++.......++.+++
T Consensus 223 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g 295 (412)
T TIGR02332 223 ------GAFAHAAMPQRSMLREIFTPA-IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFG 295 (412)
T ss_pred ------cccccccccHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHH
Confidence 000000111111122112233 33444444555556677888999998874 678888899999999999999
Q ss_pred hHhHhhhhcccCCchHH-HhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeec
Q 010185 335 TLVSVFSVDKFGRRVLF-LEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPS 413 (516)
Q Consensus 335 ~~~~g~l~d~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (516)
.++.++++||+++|+.. ........++. ++... . ...............+. ....+..+....
T Consensus 296 ~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-------------~-~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ 359 (412)
T TIGR02332 296 MIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-------------T-DHNLIQLLGIIMASMGS-FSAMAIFWTTPD 359 (412)
T ss_pred HHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-------------c-CCHHHHHHHHHHHHHHh-hhhhhHHHhhcc
Confidence 99999999999977653 33332322222 11110 0 11121111122211111 111233445556
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHH
Q 010185 414 EVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGF 461 (516)
Q Consensus 414 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~ 461 (516)
|.+|++.|+++.|+.+...++|++++|.+.|.+.+..+ |...+.++.+
T Consensus 360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 78999999999999999999999999999999999876 6554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=300.17 Aligned_cols=385 Identities=15% Similarity=0.148 Sum_probs=284.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
+..+++|.++.++++..+.+++|....+... |.+.+++ |+++.+.+++.+.+.++..+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~ 67 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF------------------GLDVAQMGWAFSAGILGLLPGA 67 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 4455888888999999999999998887654 6666665 8899999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
++.|+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+
T Consensus 68 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 147 (406)
T PRK11551 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCG 147 (406)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 178 ITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
..+|..+++.++..+.. ..+||+.|++.+++.++..+. ..++||+|++..++.+.++.
T Consensus 148 ~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------ 206 (406)
T PRK11551 148 VPFGGALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR------------------ 206 (406)
T ss_pred HHHHHHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh------------------
Confidence 99999999999776653 348999999887766655543 44589887543221110000
Q ss_pred HHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhH
Q 010185 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATL 336 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 336 (516)
+...+..++....++... ..+..+......+....+.|.++++.|+++.+.+.......++.+++++
T Consensus 207 ------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 273 (406)
T PRK11551 207 ------------APVLRALFGEGRATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSL 273 (406)
T ss_pred ------------hhhHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHH
Confidence 000011111111111111 1122222233344566678888888999999999999999999999999
Q ss_pred hHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccC
Q 010185 337 VSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVC 416 (516)
Q Consensus 337 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (516)
+.+++.||++||+.+..+.....++.+++... .+.+... ......+....+..+....+..|.+
T Consensus 274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (406)
T PRK11551 274 LIGALMDRLRPRRVVLLIYAGILASLAALAAA---------------PSFAGML-LAGFAAGLFVVGGQSVLYALAPLFY 337 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---------------CcHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 99999999999988877655555544433321 1222222 2222222222334456667778999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHHhhc
Q 010185 417 ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 417 p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 472 (516)
|++.|+++.|+.+....++..++|.+.|.+.++.+ +...+...+.+.+.+.+..+.
T Consensus 338 p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 338 PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998755 444444444444444444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=292.81 Aligned_cols=339 Identities=11% Similarity=0.098 Sum_probs=245.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...+..
T Consensus 39 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~ 118 (390)
T PRK03545 39 FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSIT 118 (390)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~ 233 (516)
.+++.|++|+++|++++++...+.++|..++|++++.+.+. .|||+.|++.++++++..+..+ .+||.|+.
T Consensus 119 ~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----- 190 (390)
T PRK03545 119 ASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLPSE----- 190 (390)
T ss_pred HHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----
Confidence 99999999999999999999999999999999998877643 4999999999888776654433 36665410
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-h
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-T 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (516)
+.++ ..+.++.++++ +.+......++..... .....+.+.+.+ .
T Consensus 191 ~~~~-------------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 235 (390)
T PRK03545 191 HSGS-------------------------------LKSLPLLFRRP---ALVSLYLLTVVVVTAH-FTAYSYIEPFVQQV 235 (390)
T ss_pred Ccch-------------------------------HHHHHHHHhCc---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 0000 00112333322 2222222222222222 223344444444 4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
.|++..+++......+++.++++++.+++.||+++|... .+..+..++...+... .++.+.....
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--------------~~~~~~~~~~ 300 (390)
T PRK03545 236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--------------ANSEWHLSVL 300 (390)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--------------hchHHHHHHH
Confidence 799999999999999999999999999999999987644 3433333333332221 0122222333
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhc
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (516)
..+.+.+. ....+.....+.+..| +.|++++|+.+...++|..++|.+.|.+.++.++...+...+.+.+.+.+....
T Consensus 301 ~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 301 SIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 33333332 2333444455557766 688999999999999999999999999999999766666666555555554443
Q ss_pred c
Q 010185 473 V 473 (516)
Q Consensus 473 ~ 473 (516)
.
T Consensus 379 ~ 379 (390)
T PRK03545 379 I 379 (390)
T ss_pred H
Confidence 3
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=296.18 Aligned_cols=374 Identities=15% Similarity=0.172 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
++++.....+.++.+.++++.....+.. |.+.+++ |+++.+.+++.+++.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM--YLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566778888888999988776543 5555554 8999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+
T Consensus 74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 010185 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYD 260 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (516)
|.++++.+...+.+ ..+||+.|++..+..++........||++++..++.+.+ .++.
T Consensus 154 g~~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~---------- 210 (426)
T PRK12307 154 GNIIAAYFMPSFAE---AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK----------GKHS---------- 210 (426)
T ss_pred HHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc----------cccc----------
Confidence 99999988766553 349999998865544443333333566654322110000 0000
Q ss_pred HHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhh
Q 010185 261 ASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVF 340 (516)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 340 (516)
....+..+.+++++++++..+........ .+........+..+.|.++++.|+++.+.+.......++.++++++.++
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~ 288 (426)
T PRK12307 211 -QSAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL 288 (426)
T ss_pred -ccchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234455544333322222222 2222233334566778888888999999999999999999999999999
Q ss_pred hhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHh-hhcCcccccceeecccCchh
Q 010185 341 SVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAA-FAWSWGPLGWLVPSEVCALE 419 (516)
Q Consensus 341 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 419 (516)
+.||++||+.+..+.++..+..+.+.... ..... ....+.+... ...+..+....++.|.+|++
T Consensus 289 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 353 (426)
T PRK12307 289 CADRIGLKKTFSIGLLMSFLFIFPLFRIP--------------QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLE 353 (426)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHc--------------cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHH
Confidence 99999999988877766555444333210 11111 1222222222 22233344456667999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh
Q 010185 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL 454 (516)
Q Consensus 420 ~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~ 454 (516)
.|+++.|+.+....+++.++|.+.|++.+..++..
T Consensus 354 ~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 354 VRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999999999999999999888543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=297.79 Aligned_cols=403 Identities=15% Similarity=0.150 Sum_probs=273.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
+.+++++.+....+++.+...++...++... |.+.+++ |++..+.+++.+.+.+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~ 75 (434)
T PRK11663 16 RYRYWRRHILITMYLGYALFYFTRKSFNAAM--PEMLADL------------------GLSRSDIGLLATLFYITYGVSK 75 (434)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 4445566666677777777777776665443 5555554 8999999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+
T Consensus 76 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 155 (434)
T PRK11663 76 FVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA 155 (434)
T ss_pred hhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHH-hhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 178 ITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTV-GSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
.++|..+++.+++.+... ++||+.|++.+++.++..+ ..+++||+|++...+...++..+ . .
T Consensus 156 ~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------------~-~ 218 (434)
T PRK11663 156 HNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-------------A-L 218 (434)
T ss_pred HHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-------------c-c
Confidence 999999999998776543 4999999998887665544 34457887743211110000000 0 0
Q ss_pred HHHHHHHHhhhccCchhhhhc--cCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHHHH
Q 010185 257 DLYDASEAAKQVHHPWTNILR--GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVNVV 333 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~ 333 (516)
+..++.++.+.++++.++ ..+.++.+. ..+..+........+..|.|.+++ ++|++..+++...+...++.++
T Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~ 294 (434)
T PRK11663 219 ---ELAQQQEGAGLSRKEILTKYVLLNPYIWL-LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFI 294 (434)
T ss_pred ---ccchhccccCCChhhhHHHHHhcChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 000000011112223221 111223333 333333333344556677887774 5799999999999999999999
Q ss_pred HhHhHhhhhccc--CCchHH-HhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccce
Q 010185 334 ATLVSVFSVDKF--GRRVLF-LEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWL 410 (516)
Q Consensus 334 ~~~~~g~l~d~~--g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (516)
++++.|++.||+ ++|+.. ........+...++... . ..+.. .........+.+..+.......
T Consensus 295 g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 360 (434)
T PRK11663 295 GALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------P--FASYV-MQAACFFTIGFFVFGPQMLIGM 360 (434)
T ss_pred HHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------c--cccHH-HHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999998 333332 22222222222221111 0 01111 1111111112222222222334
Q ss_pred eecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH-HHHhhcccC
Q 010185 411 VPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT-VFVFYMVPE 475 (516)
Q Consensus 411 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 475 (516)
...|.+|++.|+++.|+.++..++|++++|.+.|.+.++.++...+...+++.+++ +..+...++
T Consensus 361 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 361 AAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56799999999999999999999999999999999999988766655555554443 333333333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.10 Aligned_cols=392 Identities=15% Similarity=0.134 Sum_probs=276.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
+.++++|.....+.++.+.++++....+++. |.+.+++ |+++.+.+++.+.+.++..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~ 64 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF------------------GLTTVDAASLISAALISRWFGA 64 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCChhhHHHHHHHHHHHHHHHH
Confidence 3466778888888999999999998887664 5555555 8899999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+
T Consensus 65 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 144 (405)
T TIGR00891 65 LMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISG 144 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHH
Q 010185 178 ITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQD 257 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (516)
..+|.++++.+++.+....+ .+||+.|++.++..++..+....+||++++...+++.++..+..++..+.+...
T Consensus 145 ~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 218 (405)
T TIGR00891 145 YAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI----- 218 (405)
T ss_pred HHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh-----
Confidence 99999999999887765431 259999998777666665555668888755433222111111111111100000
Q ss_pred HHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH-HhcCCCchhHHHHHHHHHHHHHHHhH
Q 010185 258 LYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF-KTIGFGAEASLMSAVITGVVNVVATL 336 (516)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~ 336 (516)
....++.....++ +...++..+...................+.|.++ ++.|++..+.+.......++.+++.+
T Consensus 219 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~ 292 (405)
T TIGR00891 219 ----ANIVMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGC 292 (405)
T ss_pred ----hhhhhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0111111122222222222222223444556555 45799999999999999999999999
Q ss_pred hHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccC
Q 010185 337 VSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVC 416 (516)
Q Consensus 337 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (516)
+.+++.||++||+.+..+.....+........ ..+.+... ........+..+..+....++.|.+
T Consensus 293 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (405)
T TIGR00891 293 VFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--------------GANVAVLG-LGLFFQQMLVQGIWGILPKHLGEYF 357 (405)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--------------CCchHHHH-HHHHHHHHHHccchhhHHHHHhhhC
Confidence 99999999999998877665543322222111 01222222 2212222333344455566778999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHH
Q 010185 417 ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFF 456 (516)
Q Consensus 417 p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~ 456 (516)
|++.|++++|+.+...++++.++|++.|.+.|+.| +...+
T Consensus 358 ~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 358 PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 99999999999999999999999999999999888 54433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=289.50 Aligned_cols=391 Identities=14% Similarity=0.186 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccchhh-hhhhhchhhhhhcccCCCCCccccCCchhHHHHH-----HHHHHHHHHH
Q 010185 23 VLVTCLVAAMGGLLFGYDLGISGGVTSMDQ-FLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFT-----SSLYLAALVA 96 (516)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~l~~~i~ 96 (516)
++.+.....++.+.++||..+++.+. |. +.+++++. .++. .+++. ++.+++..++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g 80 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLG 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhH
Confidence 34567778889999999999987653 32 33445432 2333 34443 4556778899
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHhhhhcccccccchhhhhhccCCcCccc
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIA--------MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRG 168 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 168 (516)
+++.|+++||+|||+++.++.++++++++++++++|++ .++++|+++|++.|..++....++.|++|+++|+
T Consensus 81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 160 (438)
T PRK09952 81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA 160 (438)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999987 5889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccc-----CCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHH
Q 010185 169 ALNIGFQMAITIGILIANLVNYGTAKIS-----GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQ 243 (516)
Q Consensus 169 ~~~~~~~~~~~~G~~i~~~i~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 243 (516)
+..+....+..+|.+++..+...+.... ..++||++|++.+++.++...+....||+|++...+.+.++
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------ 234 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------ 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------
Confidence 9999999999999999887765544321 24699999999888776655544558898865322111000
Q ss_pred HHhCCCCcHHHHHHHHHHHHHhhhccCchhh-hhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHH
Q 010185 244 KIRGTPNVDEEFQDLYDASEAAKQVHHPWTN-ILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASL 321 (516)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~ 321 (516)
.+.+.+..+ +++ .++.+.......+......+....+.|.+.+ ..|++.....
T Consensus 235 ----------------------~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 235 ----------------------AKKRIPVIEALLR---HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ----------------------ccccCCHHHHHHH---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 000111111 222 1222332222223333344555667776664 4788877655
Q ss_pred HHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhh
Q 010185 322 MSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFA 401 (516)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (516)
......++..+++.++.|+++||++||+.+..+.++..++...+..... ..+..+..+....+...+.+
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-----------AQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-----------cCChHHHHHHHHHHHHHHHH
Confidence 5566667788888999999999999999887776554443332222110 00111221222222222222
Q ss_pred cCcccccceeecccCchhhhhhhHHHHHHHH-HHHHHHHHHHhHHHHhhcc--hhhHHHHHHHHHHHHHHHhhcccC
Q 010185 402 WSWGPLGWLVPSEVCALEIRSAGQAINVSTN-MIFTFVVGQVFLSMLCHFK--FGLFFFFAGFVAVMTVFVFYMVPE 475 (516)
Q Consensus 402 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 475 (516)
...+..+.+..|.+|++.|+++.|+.+... .+++.++|.+.+++.+..+ +...+.+.+++.+++.+..+..++
T Consensus 359 -~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 359 -MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred -HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 223455677789999999999999976665 4899999999999988542 555555566666666665555554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=283.74 Aligned_cols=444 Identities=19% Similarity=0.231 Sum_probs=321.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHH
Q 010185 16 EGGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALV 95 (516)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i 95 (516)
....+|+....+.++..+.|.++||...++.+. +-+.+.|+... +..=|.++...+.+..+..+|.++
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~~~~----------~~~g~~ps~i~~~Vn~~A~vGti~ 99 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYYHGD----------ESGGHYPSGVLALVNAAALVGTIF 99 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhcCCC----------CCCCcCCchHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998775 44444443211 111256788889999999999999
Q ss_pred HHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch-------hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccc
Q 010185 96 ASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV-------NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRG 168 (516)
Q Consensus 96 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 168 (516)
||+++|+++||+|||+++...++++.+++++++++. -.+++...|++.|+|.|+-+|.+.+..+|...+++||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 999999999999999999999999999999888862 2468889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc----cCC--------cchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcC-CH
Q 010185 169 ALNIGFQMAITIGILIANLVNYGTAKI----SGG--------WGWRVSLALAAVPAILMTVGSFFLPDTPNSILERG-HV 235 (516)
Q Consensus 169 ~~~~~~~~~~~~G~~i~~~i~~~~~~~----~~~--------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~ 235 (516)
...+.+.+..+.|.+.|.+++..+... .+. .=||..|.+.++++++.+...+.+|||+|+..... +.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~ 259 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL 259 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH
Confidence 999998888888888877776554322 221 13999999999999988888888999998874332 22
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchh---hhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh
Q 010185 236 DEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWT---NILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312 (516)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (516)
+.+.+..++.... +.++..+.....+.++.+.. ..+..+ .-+.++..+..++..-..++....+...++++
T Consensus 260 ~~a~~d~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 260 KQAAGDMKKVLSV-----DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred hhhhhcccccccc-----ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 2222111111111 11100000011111111111 222212 12445666777777777888888888888888
Q ss_pred cCCCchhHHH---------HHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 313 IGFGAEASLM---------SAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 313 ~g~s~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
.|+.+..... ...+.....++|..+...++|++|||+..+.++.++.+..+.++.... +.
T Consensus 334 ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~-----------~~ 402 (538)
T KOG0252|consen 334 IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN-----------QL 402 (538)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc-----------cc
Confidence 7776544322 222233344557777888999999999999999999988888776321 01
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh-----hcchhhHHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC-----HFKFGLFFFF 458 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~-----~~g~~~~~~~ 458 (516)
.......++..+...+...+-+.....+.+|.+|++.|++..|+...++.+|++++...+.++.+ ..+....++.
T Consensus 403 ~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i 482 (538)
T KOG0252|consen 403 ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFII 482 (538)
T ss_pred cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHH
Confidence 22333344445555666667777888999999999999999999999999999999999999998 5555555666
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 010185 459 AGFVAVMTVFVFYMVPETRNVPIEEMNRMW 488 (516)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (516)
.+.+.+.+.+..+++||+++++++|++++.
T Consensus 483 ~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 483 LAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred HHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 666667777777888899999999885443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.94 Aligned_cols=401 Identities=12% Similarity=0.020 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+..+.++.+.+++.+....|...++... |.+.++| |++..+.|++.+++.+++.+++++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQ--NDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456667777777778788888887554 6666665 8999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHh-----chhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGA-----AVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQ 175 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 175 (516)
|+++||+|||+++.+++++++++.++.++ +++++.++++|+++|++.+...+...+++.||+|+++|++++++..
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999988888887776665 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHH
Q 010185 176 MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEE 254 (516)
Q Consensus 176 ~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (516)
.+.++|.+++++++..+.......+||..|.+.++++++..+..++ .+++|+..... +.++ . .... .+.+
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~--~~~~ 235 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEP--ISEE 235 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCc--cchh
Confidence 9999999999988755443211126999998888877766554444 67776321110 0000 0 0000 0000
Q ss_pred HHHHHHHHHHhhhccCchhhhh-c-cCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHH
Q 010185 255 FQDLYDASEAAKQVHHPWTNIL-R-GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVN 331 (516)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~ 331 (516)
.+..++.+.+..+.+ + ..+.+..+. ..+..++....+.....|.|.+++ .+|++..+++.......++.
T Consensus 236 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 236 -------DKETESTDMTKWQIFVEYVLKNPVIWL-LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred -------hhccccccCcHHHHHHHHHHcChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 000000011111111 1 112233333 333344444445567788887775 47999999999999999999
Q ss_pred HHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccccee
Q 010185 332 VVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLV 411 (516)
Q Consensus 332 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (516)
+++.++.|+++||++||+.+........++..++... . ..+.+......++.+. ...+........
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~G~-~~~~~~~~~~~~ 373 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ--H-----------ATSEYMYLASLFALGF-LVFGPQLLIGVA 373 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH--h-----------cCcHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 9999999999999999887665444333322221111 0 0112222222222221 222222222245
Q ss_pred ecccCchhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHh------------hcchhhHHHHHHHHHHHHHHHhhc
Q 010185 412 PSEVCALEIRSAGQAINVSTNMI-FTFVVGQVFLSMLC------------HFKFGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 412 ~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 472 (516)
..|.+|++.+|++.|+.+..+++ |++++|.+.|.+.| ..+|...+.+..++.+++.+..+.
T Consensus 374 ~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 374 AVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 55999999999999999999997 77999999999999 456665555555555555444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=296.24 Aligned_cols=403 Identities=16% Similarity=0.151 Sum_probs=275.5
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVA 96 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (516)
+..+++++.....++++.+.++++....++.. |.+.+++ |++..+.+++.+.+.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~ 71 (496)
T PRK03893 12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF------------------GLTTVQAASLISAAFISRWFG 71 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888899999998776543 5555555 889999999999999999999
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHH
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQM 176 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 176 (516)
+++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...
T Consensus 72 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 151 (496)
T PRK03893 72 GLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLIS 151 (496)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 177 AITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 177 ~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
+..+|..+++.+++.+.+ .++||+.|++..+..++..+....+||++++..++++.++..+..+.....+.......
T Consensus 152 ~~~~g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (496)
T PRK03893 152 GFSIGAVVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINIL 228 (496)
T ss_pred HHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHH
Confidence 999999999999887664 35999999886555554444444578876543322211111111111100000000000
Q ss_pred HH-HH----HHHHhhhccCchh-------------h--hhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCC
Q 010185 257 DL-YD----ASEAAKQVHHPWT-------------N--ILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGF 315 (516)
Q Consensus 257 ~~-~~----~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 315 (516)
.. .. ...........+. . ......+++.........+...........+.|.+++ +.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~ 308 (496)
T PRK03893 229 LTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGY 308 (496)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 00 00 0000000000000 0 0001111122222222222222222234567787775 7899
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHH
Q 010185 316 GAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICA 395 (516)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (516)
+..+++...+...++.+++.++.+++.||++||+.+..+..+..+..+++... .............
T Consensus 309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 374 (496)
T PRK03893 309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI--------------GGANVWVLGLLLF 374 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--------------cccHHHHHHHHHH
Confidence 99999999999999999999999999999999998877665554444332221 0112222222222
Q ss_pred HHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHH
Q 010185 396 YVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFF 456 (516)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~ 456 (516)
...+.+.+..+....++.|.+|++.|++++|+.+....+|+.++|.+.|.+.+..++...+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~ 435 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTAL 435 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHH
Confidence 2222333334455567779999999999999999999999999999999999998865443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=259.81 Aligned_cols=387 Identities=20% Similarity=0.215 Sum_probs=299.4
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
++.++.+..+..++....+.|..+++..+|.++|++|||+.+.+..+...+..++.+.++|+..+.+.|.+.|+|.|+ .
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 444578999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHh
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILE 231 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 231 (516)
|...++-.|..|..+|...+-.. ..+.+|.+....++....... ||||.......+..+.+...+++|||||++..
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~---gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~ 259 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF---GWRYLLFTSSTPLMFAARFLVWVYESPRFYLA 259 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHhHHHHHHHHHhhcccCcchhhh
Confidence 99999999999999998877777 899999999999988777554 99999998888888888888889999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCcH---------------HHHHHHHHHH-HHhhhccCchhhhhccCCcchHHHHHHHHHHHH
Q 010185 232 RGHVDEAKKMLQKIRGTPNVD---------------EEFQDLYDAS-EAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQ 295 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (516)
+++++++.+.++++...|..+ +|..+..+.+ +..++......+++.+..++..+....+ ++.+
T Consensus 260 ~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~i-wfgn 338 (528)
T KOG0253|consen 260 KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRI-WFGN 338 (528)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHH-HHhh
Confidence 999999999998887655211 1111111111 1112234455667766555555554444 4444
Q ss_pred hhhhHHHHHhHHHHHHhcC--------------------CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhh
Q 010185 296 FTGINVIMFYAPVLFKTIG--------------------FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGG 355 (516)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g--------------------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 355 (516)
-..++........+.+..+ .+...-..-..+..+..+.|.++.+++.||+|||+.+..++
T Consensus 339 afsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l 418 (528)
T KOG0253|consen 339 AFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSL 418 (528)
T ss_pred HHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHH
Confidence 4444444444444443221 22233455667888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHH
Q 010185 356 VQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIF 435 (516)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (516)
+++.+..+++... ..........+..-.+.+.+ ....+.|..|++|+..|+++.|.++.+.++|
T Consensus 419 ~~f~iflfll~~c---------------~~rn~~tvllf~arafisg~-fqvaYvYtPEVyPTavRatgvGtcSsmaRIg 482 (528)
T KOG0253|consen 419 ILFGIFLFLLTTC---------------KTRNAYTVLLFTARAFISGA-FQVAYVYTPEVYPTAVRATGVGTCSSMARIG 482 (528)
T ss_pred HHHHHHHHHHHHh---------------cCcchhHHHHHHHHHHHhch-heEEEEecCcccchhhhhcchhhhhhHHhhh
Confidence 8888888777653 12333344444444444433 5677899999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCCCCCH
Q 010185 436 TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPI 481 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (516)
+++.|.+. ...+..-+.+.+++.+++++.++...++..|+|+|..
T Consensus 483 gI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 483 GIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999988 5555555677888888888888888888889988753
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=286.58 Aligned_cols=364 Identities=17% Similarity=0.211 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHH-HHHH-----HHHHHHH
Q 010185 23 VLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLF-TSSL-----YLAALVA 96 (516)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~i~ 96 (516)
++.+....+++.+++.+|...+++.. |.+.+++ +.++.+.+.+ .+.. .++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig 72 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYA--TAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLG 72 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhH
Confidence 33467888889999999999988665 6777766 5555554433 3322 2333578
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHhhhhcccccccchhhhhhccCCcCccc
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIA--------MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRG 168 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 168 (516)
+++.|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|+
T Consensus 73 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 152 (434)
T PRK15075 73 AIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG 152 (434)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch
Confidence 99999999999999999999999999999999999987 4689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc-----cCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHH
Q 010185 169 ALNIGFQMAITIGILIANLVNYGTAKI-----SGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQ 243 (516)
Q Consensus 169 ~~~~~~~~~~~~G~~i~~~i~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 243 (516)
+++++...+..+|..+++.+++.+... .+.+|||++|++..+...+........||++++..++
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~----------- 221 (434)
T PRK15075 153 FYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK----------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----------
Confidence 999999999888888888887765432 1356999999986554333322222244443111000
Q ss_pred HHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHH
Q 010185 244 KIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLM 322 (516)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~ 322 (516)
++.+.+..+++..+ .++.+...++..+.....++....|.|.++++ .|++..+.++
T Consensus 222 --------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~ 278 (434)
T PRK15075 222 --------------------HRPSMREIFRSLAA---NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLL 278 (434)
T ss_pred --------------------hccccccHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00000011111111 12223222232333344556677888888876 7999999888
Q ss_pred HHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhc
Q 010185 323 SAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAW 402 (516)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (516)
...+..++.+++.++.|+++||++||+.+..+..+..+......... . . ............+...+++
T Consensus 279 ~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~---------~-~~~~~~~~~~~~~~~~~~g- 346 (434)
T PRK15075 279 VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V---------A-APSFARMLAVELWLSFLYG- 346 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H---------c-CCchHHHHHHHHHHHHHHH-
Confidence 88889999999999999999999999987765444332211111110 0 0 0111111111112222222
Q ss_pred CcccccceeecccCchhhhhhhHHHHHHHHH-HHHHHHHHHhHHHHhhcch
Q 010185 403 SWGPLGWLVPSEVCALEIRSAGQAINVSTNM-IFTFVVGQVFLSMLCHFKF 452 (516)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~~~~~~~~g~ 452 (516)
...+....+..|.+|++.|+++.++.+.... +++.++|.+.+++.|..++
T Consensus 347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 347 SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 2233444667899999999999999766555 4588899999999998874
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=274.38 Aligned_cols=345 Identities=14% Similarity=0.105 Sum_probs=249.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~ 119 (393)
T PRK09705 40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMP 119 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC-CCChHHHHhcCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL-PDTPNSILERGH 234 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~ 234 (516)
.++.+++| ++|+++++++..+..+|..+++.++..+.... .+||+.+.+.++..++..+..+.. ++.|+
T Consensus 120 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 189 (393)
T PRK09705 120 SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVA------- 189 (393)
T ss_pred HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------
Confidence 99999997 77999999999999999999999877665432 289998877666554443333322 22220
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcC
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIG 314 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (516)
+ ++++ +....+.++ +++.+... +..+.....+.....+.|.+++++|
T Consensus 190 -~---------------------------~~~~-~~~~~~~l~---~~~~~~l~-~~~~~~~~~~~~~~~~lp~~l~~~g 236 (393)
T PRK09705 190 -S---------------------------SHKT-TTTPVRVVF---TPRAWTLG-VYFGLINGGYASLIAWLPAFYIEIG 236 (393)
T ss_pred -c---------------------------ccCC-CcCCccccc---CHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 0000 001111222 22333222 2233334455567778888888899
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
++..+++...+..+++.++++++.+++.||++||+....+..+..++..++.... .+... . ...
T Consensus 237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~-~-~~~ 300 (393)
T PRK09705 237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP--------------LQLPV-L-WAM 300 (393)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc--------------chHHH-H-HHH
Confidence 9999999999999999999999999999999999988887766666655443210 11111 1 122
Q ss_pred HHHHhhhcCcccccceeecccC-chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHH-HHHhh
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVC-ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMT-VFVFY 471 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~ 471 (516)
+.+.+.+. ..+.......+.. |++.+++..|+.+...++++.++|.+.|++.|..| +...+.+..++.+.. ...+.
T Consensus 301 l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 301 VCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 22222222 2333333334555 56789999999999999999999999999999887 555454444443333 33355
Q ss_pred cccCCCCCC
Q 010185 472 MVPETRNVP 480 (516)
Q Consensus 472 ~~~~~~~~~ 480 (516)
+.+|++++.
T Consensus 380 ~~~~~~~~~ 388 (393)
T PRK09705 380 FAPARFPQL 388 (393)
T ss_pred hccccccch
Confidence 566665543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=271.72 Aligned_cols=335 Identities=10% Similarity=0.056 Sum_probs=227.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..++.....+.+....++|++.++++|+++|++.+. .+..
T Consensus 21 ~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~ 99 (368)
T TIGR00903 21 IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNA 99 (368)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHH
Confidence 389999999999999999999999999999999999987766555555443333347999999999999999986 5566
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~ 233 (516)
...++|++|+++|++++++...+..+|.+++++++..+.+ .+|||+.|++.++++++..+.. +++||+|++..++
T Consensus 100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~- 175 (368)
T TIGR00903 100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG- 175 (368)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence 6677999999999999999999999999999999888764 3599999999888877665544 4589988532100
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (516)
. +. + +. ..+++++++++ . .+...+..++....++.+..|.|.++++.
T Consensus 176 -~----------------~~--~------~~----~~~~~~ll~~~---~-~~~~~~~~~~~~~~~~~~~~wlp~~L~~~ 222 (368)
T TIGR00903 176 -F----------------GF--K------DA----VKEFGALAGRK---D-LWIIGAILGFGVALFDNLAIWLEAALRPA 222 (368)
T ss_pred -c----------------ch--H------HH----HHHHHHHHcCh---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0 00 0 00 01234555532 2 33344445555666677888999999888
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc---hHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHH
Q 010185 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR---VLFLE-GGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFV 389 (516)
Q Consensus 314 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (516)
|++.. .+.......+.+.++ .++++||..|| +.... ...+.++....+... .+....
T Consensus 223 g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~ 283 (368)
T TIGR00903 223 GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE---------------LNRLAL 283 (368)
T ss_pred CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc---------------cccHHH
Confidence 88764 555555555555555 46777776543 33222 222222222222210 112222
Q ss_pred HHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch-hhHHHHHHHHHHHHHH
Q 010185 390 LFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF-GLFFFFAGFVAVMTVF 468 (516)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 468 (516)
+... .....+.....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +. ..+..+++...+.++.
T Consensus 284 ~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 284 FAFI-GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred HHHH-HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 2222 222222333334566788899999999999999999999999999999988774 42 3444444444444444
Q ss_pred H
Q 010185 469 V 469 (516)
Q Consensus 469 ~ 469 (516)
.
T Consensus 361 ~ 361 (368)
T TIGR00903 361 A 361 (368)
T ss_pred H
Confidence 3
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=284.45 Aligned_cols=388 Identities=10% Similarity=0.003 Sum_probs=274.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhH
Q 010185 22 FVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFAS 101 (516)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g 101 (516)
++|.++..++++.++...|.++++... |++.+++ |.+..+.+|+.+.|.+++.++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~--p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAA--PTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999988664 7777776 88999999999999999999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccC-CcCccchhHHHHHHHHHH
Q 010185 102 VVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMA-PAKVRGALNIGFQMAITI 180 (516)
Q Consensus 102 ~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~ 180 (516)
+++||+|||+++..+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888887776 678999999999999999
Q ss_pred HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCCHHHHHHH-------HHHHh-C-CCC
Q 010185 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERGHVDEAKKM-------LQKIR-G-TPN 250 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~-------~~~~~-~-~~~ 250 (516)
|..+||.+++.+.+. .+|||.|++...++++..++. +++||.|+...++.+....... ..... . .+.
T Consensus 143 g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~ 219 (495)
T PRK14995 143 GAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGF 219 (495)
T ss_pred HHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccC
Confidence 999999999988754 499999999887777665444 4477765321111111110000 00000 0 000
Q ss_pred cHH-H-HHH-------HHHHHHHhhhccCch--hhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCch
Q 010185 251 VDE-E-FQD-------LYDASEAAKQVHHPW--TNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAE 318 (516)
Q Consensus 251 ~~~-~-~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~ 318 (516)
... . ... .......+.+.+.+. .++++++. ..... +..+...........+.|.+++. +|+++.
T Consensus 220 ~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~ 295 (495)
T PRK14995 220 LSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI---ILSGV-VMAMTAMITLVGFELLMAQELQFVHGLSPL 295 (495)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc---cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 000 0 000 000000111112222 23444322 22222 22223333344556677777665 799999
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHH
Q 010185 319 ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVA 398 (516)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
+++....+..++..++.++.|++.||+|+|+.+..+..+..++..++.... .....+.......+.+.
T Consensus 296 ~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~l~G~ 363 (495)
T PRK14995 296 EAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD------------FSTQQWQAWGLMALLGF 363 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc------------CCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877777666665554321 01122222333333344
Q ss_pred hhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 399 AFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
+.+... +.......+..|++.++.+.++.++..++|+.+++.+.+.+.++
T Consensus 364 g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 364 SAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332 33334445788999999999999999999999999999998764
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=270.49 Aligned_cols=361 Identities=17% Similarity=0.149 Sum_probs=251.0
Q ss_pred HHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhch
Q 010185 30 AAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGR 109 (516)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 109 (516)
.+++.+..++......+.. |.+.+++ |++..+.+++.+.+.+++.+++++.|+++||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~ 67 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVL--TELAHDV------------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSL 67 (382)
T ss_pred HHHHHHHHHhhHHHHHhCh--HHHHHHc------------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 3444555555555544443 5555555 8899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHH
Q 010185 110 KMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVN 189 (516)
Q Consensus 110 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 189 (516)
|+++.++.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++++++
T Consensus 68 r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 147 (382)
T PRK10091 68 KHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG 147 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999998
Q ss_pred hhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhc
Q 010185 190 YGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQV 268 (516)
Q Consensus 190 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (516)
+.+.+. .+||+.|++.+++.++..+.. .++||.++. .+.+. +
T Consensus 148 ~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~-------------------------~----- 190 (382)
T PRK10091 148 TYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AKGGL-------------------------R----- 190 (382)
T ss_pred HHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cccCH-------------------------H-----
Confidence 877643 489999999888776655443 347775410 00000 0
Q ss_pred cCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHh-HHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCC
Q 010185 269 HHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFY-APVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGR 347 (516)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (516)
..+ +.++ +++.+.......+.. ........+ .|++.+..|+++.+.+......+++.++++++.+++.||+++
T Consensus 191 -~~~-~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~ 264 (382)
T PRK10091 191 -EQF-HFLR---SPAPWLIFAATMFGN-AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSP 264 (382)
T ss_pred -HHH-HHhc---ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCc
Confidence 000 1111 122222222222221 222222333 445545579999999999999999999999999999999999
Q ss_pred chHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH
Q 010185 348 RVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI 427 (516)
Q Consensus 348 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 427 (516)
|+.+..+..+.+++.+++.... +..+.......+...+......+.......+..|++.++.+ .
T Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ 328 (382)
T PRK10091 265 LRIAAVTDFIIVLALLMLFFFG--------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--G 328 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--H
Confidence 9988887777666665543321 12222233333333322222222332334344455555544 3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhh-cchhhHHHHHHHHHHHHHHH
Q 010185 428 NVSTNMIFTFVVGQVFLSMLCH-FKFGLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 428 ~~~~~~~g~~i~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 469 (516)
.+....+|.+++|.+.|.+.|. .++...+...++..++.+..
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 4677889999999999999996 45665555554444444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=267.21 Aligned_cols=329 Identities=16% Similarity=0.184 Sum_probs=237.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+..
T Consensus 50 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 129 (394)
T PRK10213 50 LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMS 129 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~ 233 (516)
.+++.|++|+++|++++++...+.++|.+++|++++.+.+. ++||+.|++.++++++..+... ..||+|++
T Consensus 130 ~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~----- 201 (394)
T PRK10213 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE----- 201 (394)
T ss_pred HHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----
Confidence 99999999999999999999999999999999999887754 4999999998877766554433 36765410
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHH-HHhHHHHHHh
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVI-MFYAPVLFKT 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 312 (516)
+ + +.+.+..+.++ +++++..... .+......... .+..|.+.++
T Consensus 202 ~-~------------------------------~~~~~~~~~l~---~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~ 246 (394)
T PRK10213 202 P-S------------------------------HQKQNTFRLLQ---RPGVMAGMIA-IFMSFAGQFAFFTYIRPVYMNL 246 (394)
T ss_pred c-c------------------------------cchhHHHHHhc---CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 00001122232 2333332222 22222222233 3345777778
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
.|+++.+.+......+++.+++.++.+++.||.+ |+.+..+..+.....+.+.... ++.+.....
T Consensus 247 ~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~ 311 (394)
T PRK10213 247 AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--------------SDKIVATGV 311 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHH
Confidence 8999999999999999999999999999999954 4443333333333322222210 123333333
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
..+.+.+++ ...+....++.+..| +.+++..+......+++..+++.+.|.+.|..|+...+..++...
T Consensus 312 ~~l~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 312 AIIWGLTFA-LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 333333332 223444445556677 556777788888889999999999999999888766555554433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.00 Aligned_cols=356 Identities=11% Similarity=0.045 Sum_probs=225.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+... ..
T Consensus 66 ~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~ 144 (476)
T PLN00028 66 LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SC 144 (476)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999988654 45
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcc----c--cCCcchhHHHHHhHHHHHHHHHhhccCC-CChH
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAK----I--SGGWGWRVSLALAAVPAILMTVGSFFLP-DTPN 227 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~----~--~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~ 227 (516)
..++.|++|+++|++++++......+|..+++.+...+.. . .+..+||+.|++.+++.++..+..++++ +.|+
T Consensus 145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~ 224 (476)
T PLN00028 145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD 224 (476)
T ss_pred HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 6788999999999999999987777777777655443321 1 1124899999999988877665555544 4341
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHH
Q 010185 228 SILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAP 307 (516)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (516)
++.++..+ +.+ .++.+....+++.++ .++.+..... ++...........+.|
T Consensus 225 -----~~~~~~~~-------~~~------------~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 225 -----GNYRELKK-------SGT------------MPKDSFSKVLRYGVT---NYRTWILALT-YGYSFGVELTMDNIIA 276 (476)
T ss_pred -----CchhhHHh-------cCc------------cccccHHHHHHHHHc---CchhHHHHHH-HHHHHHHHHHHHhHHH
Confidence 00000000 000 000000011222222 2233332222 2222223334555666
Q ss_pred HHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchH----HHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 308 VLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVL----FLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 308 ~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
.++. +.|++..+++....+..++.++++++.|+++||++||+. .........+..+.+.... ..
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-----------~~ 345 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-----------RA 345 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-----------cc
Confidence 6654 579999999999999999999999999999999986521 1111111111111111110 00
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHH
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFV 462 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (516)
.+.+..+...+++..+.... .+..+.+..+..| +.+|++.|+.+..+.+|+.++|.+.+ ..+..+|...+.+.+++
T Consensus 346 -~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~ 421 (476)
T PLN00028 346 -NSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVM 421 (476)
T ss_pred -chHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHH
Confidence 12222222222222222212 2234455556655 78999999998888888888877654 11223455555555555
Q ss_pred HHHHHHHhhccc
Q 010185 463 AVMTVFVFYMVP 474 (516)
Q Consensus 463 ~~~~~~~~~~~~ 474 (516)
.+++.++.++.+
T Consensus 422 ~~i~~~~~~~~~ 433 (476)
T PLN00028 422 IIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHhee
Confidence 555555555554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=275.44 Aligned_cols=385 Identities=16% Similarity=0.252 Sum_probs=269.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHh
Q 010185 20 TSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFF 99 (516)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (516)
+++++.....+.+..+..+++....++.. |.+.+++ |.+..+.+++.+.+.++..+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAA--PAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALF 71 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777888776665443 5444444 889999999999999999999999
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHH
Q 010185 100 ASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179 (516)
Q Consensus 100 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 179 (516)
.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..
T Consensus 72 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 151 (398)
T TIGR00895 72 FGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP 151 (398)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHH-HhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHH
Q 010185 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMT-VGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDL 258 (516)
Q Consensus 180 ~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (516)
+|..+++.+++.+.+. .+||+.|++.+++.++.. +...++||++++..++ +.++..+..++.......+.+. ..
T Consensus 152 ~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 226 (398)
T TIGR00895 152 IGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-AL 226 (398)
T ss_pred HHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cc
Confidence 9999999998776643 489999998865555444 4445589988765544 3333333322221111000000 00
Q ss_pred HHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhH
Q 010185 259 YDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVS 338 (516)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 338 (516)
.+++.+++..+...+.+++.+..++.... .+..+...........+.|++.++.|+++.+.+.......++.+++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 305 (398)
T TIGR00895 227 PEQKATQGTKRSVFKALFQGKTARITVLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIF 305 (398)
T ss_pred cccccccchhhHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111112223332222332322 22233344455566777888888889999999999999999999999999
Q ss_pred hhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCch
Q 010185 339 VFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL 418 (516)
Q Consensus 339 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 418 (516)
+++.||+++|+... ...+..+...++... . .+.+......++.+.+.+ ...+....+..|.+|+
T Consensus 306 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 369 (398)
T TIGR00895 306 GWLADRLGPRVTAL-LLLLGAVFAVLVGST--L------------FSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPT 369 (398)
T ss_pred HHHHhhcchHHHHH-HHHHHHHHHHHHHHH--h------------hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCH
Confidence 99999999984433 333333332222221 0 122223333333333332 3345667788899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 010185 419 EIRSAGQAINVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 419 ~~~~~~~g~~~~~~~~g~~i~~~~~~~~ 446 (516)
+.|+++.|+.+....++..++|.+.|.+
T Consensus 370 ~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 370 AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999865
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=273.68 Aligned_cols=373 Identities=16% Similarity=0.068 Sum_probs=241.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch----hhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV----NIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~ 151 (516)
|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++++++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999988763 78889999999999999988
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHH-HHHHHHhhhccccCCcchhHHHHHhHHHHHHHHH-hhccCCCChHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGIL-IANLVNYGTAKISGGWGWRVSLALAAVPAILMTV-GSFFLPDTPNSI 229 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~ 229 (516)
+.....+.|++|+++|+++++++..+..+|.. .+|+++..+... .+||+.|++.+++.++..+ ..+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 88888999999999999999999999999874 455543333222 2899999998877766544 445588887532
Q ss_pred HhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhc--cCCcchHHHHHHHHHHHHhhhhHHHHHhHH
Q 010185 230 LERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILR--GRYRPQLTMCTLIPFFQQFTGINVIMFYAP 307 (516)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (516)
..++ .++..+ + ... + .+.+++++.+.++.++ ..+.+.++. ..+..+......+....|.|
T Consensus 216 ~~~~-~~~~~~---~-~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~P 277 (452)
T PRK11273 216 GLPP-IEEYKN---D-YPD-----D-------YNEKHEQELTAKQIFMQYVLPNKLLWY-IAIANVFVYLLRYGILDWSP 277 (452)
T ss_pred CCCC-hhhhhh---c-ccc-----c-------cccccCCCccHHHHHHHHHHcChHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1111 111000 0 000 0 0000001111222111 111233333 33333333334455677888
Q ss_pred HHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc--CCchHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 308 VLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKF--GRRVLFLE-GGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 308 ~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
.++++ .|++..+++.......++.+++.++.|+++||+ +||+...+ ...+..++.+++... ..
T Consensus 278 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-------------~~ 344 (452)
T PRK11273 278 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-------------PA 344 (452)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-------------cc
Confidence 88876 689989999888899999999999999999999 44443222 112222222221110 00
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHH-HHHHhHHHHhhcchhhHHHHHHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFV-VGQVFLSMLCHFKFGLFFFFAGFV 462 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i-~~~~~~~~~~~~g~~~~~~~~~~~ 462 (516)
.+.+.........+.. ..+.......+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|..++...+...+.+
T Consensus 345 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~ 423 (452)
T PRK11273 345 GNPTVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 423 (452)
T ss_pred cChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence 1111122222222111 11111222334568999999999999999999998765 799999999998876665555544
Q ss_pred HHHHHHHhhcccCCCCCCHHH
Q 010185 463 AVMTVFVFYMVPETRNVPIEE 483 (516)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (516)
.+.+++........++|+.||
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 424 SILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHhccccchHHH
Confidence 455554444444444444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=274.14 Aligned_cols=340 Identities=14% Similarity=0.103 Sum_probs=246.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++.++++|++.|++.+..++...
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIAL 113 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGH 234 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~ 234 (516)
..+.+++| ++|+++.++...+.++|..+++++...+. +..+||+.|++.+++.++..+..++ ++++|+.. .+++
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (377)
T TIGR00890 114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI---NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN 188 (377)
T ss_pred HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC
Confidence 88999997 56999999999999999887665544333 2348999999998888776655444 55443210 0000
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcC
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIG 314 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (516)
++. ++++.+.++.++++. .+..... .+...........+.+.+.++.|
T Consensus 189 --------------~~~--------------~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 236 (377)
T TIGR00890 189 --------------IEV--------------SVKDYTVWEMLRTPQ---FWVLYLS-FFLNAVSGLLLIGLYKPYGQSLG 236 (377)
T ss_pred --------------ccc--------------chhhhhHHHHHcCcc---HHHHHHH-HHHHhHHHHHHHHHHHHHHHHcC
Confidence 000 000011223333222 2222211 22222222233344555667788
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
.+..+.+.......+..++++++.+++.||++||+.+..+..+..++.+++.... ............
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 303 (377)
T TIGR00890 237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-------------MLNDVLFLATVA 303 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-------------cchhHHHHHHHH
Confidence 8888889999999999999999999999999999998888777777666554320 011111212222
Q ss_pred HHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
+.....+ ...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..++...+.+.+++.+.+
T Consensus 304 ~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 304 LVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 2222222 2234445667799999999999999999999999999999999999888876666655554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.76 Aligned_cols=372 Identities=12% Similarity=0.082 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHH
Q 010185 25 VTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVT 104 (516)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~ 104 (516)
.+...++++.+..+.+....+... |++.+++ |+|..+.+++.+.+.+++.+++++.|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~ 66 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVM--GPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLM 66 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888877776554 6666655 88999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHH
Q 010185 105 RMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILI 184 (516)
Q Consensus 105 dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 184 (516)
||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++.......+|..+
T Consensus 67 dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 67 EIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 010185 185 ANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEA 264 (516)
Q Consensus 185 ~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (516)
+|.+.+.+.. +..+||+.|.+.+++.++..+..++ ++.|+. ++++ +
T Consensus 147 ~~~~~~~l~~--~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~---------------------------- 192 (394)
T PRK03699 147 FPIIAAYLLA--RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-P---------------------------- 192 (394)
T ss_pred HHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-c----------------------------
Confidence 9988665532 2248999999888777665544332 222210 0000 0
Q ss_pred hhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhc
Q 010185 265 AKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVD 343 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 343 (516)
++.+.. .+...+++ .+...+..+........+..|.|.+++ ++|+++.+++...+...++..+++++.+++.|
T Consensus 193 -~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 193 -KADKPV----AKEKWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred -cccCcc----ccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 01111222 233333333344445566778888775 57999999999999999999999999999999
Q ss_pred ccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhh
Q 010185 344 KFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSA 423 (516)
Q Consensus 344 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 423 (516)
|+++|+.+.....+..+...++... ++.+......+..+ .......+....+..|..| +.+++
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~-~~~~~ 329 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLFVNT---------------DDPSHLLYAILGLG-FFSSAIYTTIITLGSQQTK-VASPK 329 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHc---------------CCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHcc-CCCHH
Confidence 9999988876665544443333221 12222222222222 2222333444445556665 44677
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 424 GQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 424 ~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
..+.......+|..++|.+.|.+.+..++...+....++.+++.+.....
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 88888999999999999999999998886555444444444443433333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=275.35 Aligned_cols=367 Identities=14% Similarity=0.132 Sum_probs=255.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+...+..
T Consensus 24 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 103 (399)
T TIGR00893 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGI 103 (399)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~ 233 (516)
..++.|++|+++|++++++......+|.++++.+++.+... .+||+.|++.+++.++..+...+ .||+|+.... .
T Consensus 104 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (399)
T TIGR00893 104 ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-L 179 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-C
Confidence 99999999999999999999999999999999998876543 38999999988887766555444 6665521110 0
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-h
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-T 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (516)
+.++..+..++...+ .+..+++++.+...++.++ +++.+. ..+..+...........+.|.+++ .
T Consensus 180 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (399)
T TIGR00893 180 TEEEKYIVVGGLLAE----------QQGKGPSTPKKYQIKELLK---DRRVWG-LALGQFLVNIGLGFFLTWFPTYLVQE 245 (399)
T ss_pred CHHHHhhcchhhccc----------cccccccCCCccchHHHhc---CHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 111100000000000 0000011111222333333 233333 333344444455566677776665 4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHh-hhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLE-GGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
.|.++.+.+.......++.+++.++.+++.||++||+.... ......++.+......... . .........
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~ 316 (399)
T TIGR00893 246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-------N--YVNIPYAAL 316 (399)
T ss_pred hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-------c--cchhHHHHH
Confidence 79999999999999999999999999999999999862211 1111111111111111100 0 011222222
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 469 (516)
. ......+..+..+....+..|..|++.|+++.|+.+....+++.++|.+.|.+.+..+ +...+.+.++..+.+.+.
T Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 317 A-LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred H-HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 2 2222233333567778888999999999999999999999999999999999999888 666555555554444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=276.07 Aligned_cols=424 Identities=12% Similarity=0.091 Sum_probs=274.9
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhh----hhcccCCCCCccccCCchhHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVY----RKQLNKGHESAYCKFDSQLLTLFTSSLYLAA 93 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~ 93 (516)
...++++.++.+++++......|....+... +...++-....+ .++..+...++|++++..+.|++.+.+.+++
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~ 89 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQ 89 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHH
Confidence 3455667777777777777788887776554 333331100000 0001112234478999999999999999999
Q ss_pred HHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc--hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhH
Q 010185 94 LVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA--VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALN 171 (516)
Q Consensus 94 ~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 171 (516)
.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus 90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999888654 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCC
Q 010185 172 IGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPN 250 (516)
Q Consensus 172 ~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 250 (516)
++...+..+|.++++++++.+.+.. .+||+.|++.++++++..+++++ .+|+|+.... .+.+| ++..++.
T Consensus 170 ~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~-~~~i~~~----- 240 (465)
T TIGR00894 170 GMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFE-KKYINSS----- 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHH-HHHHHhh-----
Confidence 9999999999999999988765431 28999999999888777666555 6676632110 01111 0000000
Q ss_pred cHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHH
Q 010185 251 VDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGV 329 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 329 (516)
.++.+.+.+.+.+++++++. +..+...+..+......+.+..|.|.++++ +|++..++++..+...+
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 241 --------LQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred --------cccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 00000001112345554442 234444444555555666777888877765 79999999999999999
Q ss_pred HHHHHhHhHhhhhcccCCchHHH---hhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccc
Q 010185 330 VNVVATLVSVFSVDKFGRRVLFL---EGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGP 406 (516)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
+.+++.++.|+++||+++|+... .......++..+........ ..........+....+...+ .....+
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~-~~~~~~ 380 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL-------PYLSAAFYLTIIILTLANAV-SSGPLA 380 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCchHHHHHHHHHHHHH-hhhhhh
Confidence 99999999999999976442211 00111111111100000000 00001122222222222222 222223
Q ss_pred ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc--c-hhhHHHHHHHHHHHHHHHhhcc
Q 010185 407 LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF--K-FGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
.......|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. + +...+.+.++..+++.+.....
T Consensus 381 ~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 381 GVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 33344556666 58999999999999999999999999887653 2 4444444444444444444433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=275.62 Aligned_cols=359 Identities=14% Similarity=0.114 Sum_probs=238.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHH-HHHhhhhcccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLII-GRLMLGVGVGFANQV 153 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~ 153 (516)
+|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|+++|++.+...+.
T Consensus 49 ~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~ 128 (455)
T TIGR00892 49 FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQP 128 (455)
T ss_pred hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhH
Confidence 3899999999999999999999999999999999999999999999999999999999998875 579999999987777
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC-CCChHHHHhc
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL-PDTPNSILER 232 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 232 (516)
..+++.++++ ++|+++.++...+..+|..++|++++.+... +|||+.|++.+++.++..+..+++ ++.+.. ++
T Consensus 129 ~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~ 202 (455)
T TIGR00892 129 SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RV 202 (455)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cc
Confidence 8888899996 6799999999999999999999998776643 489999999988877655544443 322210 00
Q ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh
Q 010185 233 GHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT 312 (516)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (516)
.+.++. +........+ + .......++..+....+.++ .+..+. .....+.....+.....+.|.+.++
T Consensus 203 ~~~~~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~~ 270 (455)
T TIGR00892 203 SKSKSK----EGLPPDGSTK-K---LSKKSTAEKINRFLDFSLFT---HRGFLV-YLSGNVIMFLGFFAPIIFLVPYAKD 270 (455)
T ss_pred cccccc----ccCCCCCccc-c---ccccchhhhhhhhcchHHhc---CchHHH-HHHHHHHHHHHccchHHHHHHHHHH
Confidence 000000 0000000000 0 00000000000000012333 223333 2233333333444555677777788
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc--CCchHHHhhhHHH--HHHHHHHHHHHHHhcCCCCCCCcccchhHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKF--GRRVLFLEGGVQM--FICQCLVGIMLALKFGLRGEGTLTKFDADF 388 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (516)
.|++..+++...++.+++.++++++.+++.||. ++|+...+..... +++.+++... ++.+.
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---------------~~~~~ 335 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA---------------GDYTG 335 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---------------chHHH
Confidence 899999999999999999999999999999974 3333333222222 2222222110 12222
Q ss_pred HHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHH
Q 010185 389 VLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTV 467 (516)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 467 (516)
......+.+.+ .....+....++.|.+|++.++++.|+.+....+|++++|.+.|.+.+..+ +...+.+.++..+++.
T Consensus 336 ~~i~~~~~G~~-~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 336 LVIYCIFFGLS-FGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHHH-hchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 23333333333 223345556677789999999999999999999999999999999998775 6555444444434333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=266.42 Aligned_cols=340 Identities=16% Similarity=0.121 Sum_probs=241.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc--------hhhhHHHHHHHhhhhc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA--------VNIAMLIIGRLMLGVG 146 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~ 146 (516)
+|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++.+.+.++ .+++.+++.|+++|++
T Consensus 46 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 125 (399)
T PRK05122 46 LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIG 125 (399)
T ss_pred cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhh
Confidence 38899999999999999999999999999999999999999999998887776554 2577899999999999
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+... .+||+.+++.++..++..+.....|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (399)
T PRK05122 126 ESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLARPRPAVP 202 (399)
T ss_pred HHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999998877643 4899998887766554444333334332
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 227 NSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
+. + ++ +.++++.++.. +...... ......+.....+.
T Consensus 203 ~~---~---~~-------------------------------~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~ 239 (399)
T PRK05122 203 PV---K---GE-------------------------------RLPFRRVLGRV--WPYGMGL----ALASIGFGTIATFI 239 (399)
T ss_pred CC---C---cc-------------------------------chhHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHH
Confidence 10 0 00 00111111100 0001111 11112233445566
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 010185 307 PVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDA 386 (516)
Q Consensus 307 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (516)
+.+.++.|.+ +.+.......++.+++.++.+++.||+++|+.+..+..+..++.+++... ++.
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 302 (399)
T PRK05122 240 TLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---------------PSP 302 (399)
T ss_pred HHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---------------ccH
Confidence 6666666663 44566677888889999999999999999998887777766666555431 122
Q ss_pred HHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH
Q 010185 387 DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
+.......+.+.+.+. ..+.......|..|++.|+++.|+.+....+|..+++++.|.+.+..++...+.+.+.+.+.+
T Consensus 303 ~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 381 (399)
T PRK05122 303 WMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLG 381 (399)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 2333333333333332 233333445588899999999999999999999999999999999888776666666665555
Q ss_pred HHHhhcccCCCC
Q 010185 467 VFVFYMVPETRN 478 (516)
Q Consensus 467 ~~~~~~~~~~~~ 478 (516)
.+.....+++++
T Consensus 382 ~~~~~~~~~~~~ 393 (399)
T PRK05122 382 LALTWLLYRRAP 393 (399)
T ss_pred HHHHHHhccccc
Confidence 555555554433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=273.38 Aligned_cols=389 Identities=19% Similarity=0.168 Sum_probs=280.7
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++....
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcC
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERG 233 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 233 (516)
...++.|++++++|+.+..+ ......+..+++..++++.. +||+.+++..+++++.++.+++.||+|||+..++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 99999999999999999999 55556666666665555442 8999999999999988877666789999999999
Q ss_pred CHHHHHHHHHHHhCCC----CcHHHHHHH-HHHHH--HhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 234 HVDEAKKMLQKIRGTP----NVDEEFQDL-YDASE--AAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
+.+++.+.+++....+ ......... ..... ...+++..+.++++.+..++......+.++.....++. .
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~g----l 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYG----L 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHh----h
Confidence 9999999988876533 121111111 11111 11122345666666553333333333333222222221 2
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 010185 307 PVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDA 386 (516)
Q Consensus 307 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (516)
+.....+|.+ ........+.....+....+...|+.|||.....+..+..+++++..+.... ...
T Consensus 342 ~~~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 406 (521)
T KOG0255|consen 342 SLNVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD------------LGG 406 (521)
T ss_pred hhhhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc------------chh
Confidence 2222233322 2445555556888888888999999999999999999989888888875321 111
Q ss_pred HHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHH-HHHHHHHHH
Q 010185 387 DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFF-FFAGFVAVM 465 (516)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 465 (516)
+.......+...+.+.++... +.+..|++|+..|..+.+..+....++++++|.+.-.... ....... .++....+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLL 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHH
Confidence 223333333334444444334 7888899999999999999999999999999988754444 2222222 246666666
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHh
Q 010185 466 TVFVFYMVPETRNVPIEEMNRMWK 489 (516)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ 489 (516)
+.+...++||++++.+.+..++.+
T Consensus 485 ~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHhcCcccCCCCCchhHHHHH
Confidence 667778999999988765544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=265.59 Aligned_cols=380 Identities=13% Similarity=0.082 Sum_probs=269.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
+.+++.++..+.+.+..+...++...+.+.. |.+.+++ |++..+.++..+.+.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~ 65 (406)
T PRK15402 6 RLGRQALLFPLCLVLFEFATYIANDMIQPGM--LAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQ 65 (406)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhHhcch--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888888888777777665543 6666665 8899999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
++.|+++||+|||+++.++.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++....
T Consensus 66 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 145 (406)
T PRK15402 66 WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145 (406)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 178 ITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
..+|..++|.+++.+.+. .+||+.|++.++..++..+... ..||+++...++ + ..
T Consensus 146 ~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~- 201 (406)
T PRK15402 146 ALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK----L----------------SL- 201 (406)
T ss_pred HHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc----c----------------cH-
Confidence 889999999998877643 3899999998888776655443 477765210000 0 00
Q ss_pred HHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH-HhcCCCchhHHHHHHHHHHHHHHHh
Q 010185 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF-KTIGFGAEASLMSAVITGVVNVVAT 335 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~ 335 (516)
++...++++++++ ++.+..... .+...........+.|.++ +.+|+++.+.+.......++.+++.
T Consensus 202 ---------~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~ 268 (406)
T PRK15402 202 ---------KELGRDYKLVLKN---RRFVAGALA-LGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN 268 (406)
T ss_pred ---------HHHHHHHHHHHcC---cHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 0001112333332 222222222 2222222233444566655 4579999888888888888899999
Q ss_pred HhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeeccc
Q 010185 336 LVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEV 415 (516)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (516)
++.+++.||+++|+.+..+..+..++..++...... .....+.......+...+.+.. .+...... ..
T Consensus 269 ~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~-~~ 336 (406)
T PRK15402 269 LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI----------SSHAYLWLTAGLSLYAFGIGLA-NAGLYRLT-LF 336 (406)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc----------ccccHHHHHHHHHHHHHHHHHH-hhhHHHHH-hh
Confidence 999999999999998888877777666666543211 0112222222333333333322 22222222 22
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH
Q 010185 416 CALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 416 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
.+++.+|++.+..+....++..+++.+.+.+++..+...+....+++.+..
T Consensus 337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 337 SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 344889999999999999999999999999988877554444444443333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=257.50 Aligned_cols=361 Identities=12% Similarity=0.106 Sum_probs=254.2
Q ss_pred HHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010185 27 CLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRM 106 (516)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr 106 (516)
+....++.++.+.+....++.. |.+.+++ |.|..+.|++.+.+.+++.+++++.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l--p~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr 67 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLV--PLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR 67 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344466677788887776554 6666655 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHH
Q 010185 107 YGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIAN 186 (516)
Q Consensus 107 ~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 186 (516)
+|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+
T Consensus 68 ~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 68 IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HHHhhhccccCCcchhHHHHHhHHHHHHHH-HhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Q 010185 187 LVNYGTAKISGGWGWRVSLALAAVPAILMT-VGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAA 265 (516)
Q Consensus 187 ~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (516)
.+++.+.... .|+.. +..+....... +.....++++. +
T Consensus 148 ~~~~~l~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~ 186 (381)
T PRK03633 148 LLVSKVSTEL---MSVLP-WVTGLVLAAILPLLFTRILNQQA-------------------------------------E 186 (381)
T ss_pred HHHhcccccc---cchHH-HHHHHHHHHHHHHHHhcccCCCC-------------------------------------C
Confidence 9988765431 22222 22222221111 11111222110 0
Q ss_pred hhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc
Q 010185 266 KQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF 345 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (516)
++++.+..+.++++..+ .. ....+.....+.....+.|.+.++.|.++.+.+.......++.+++++..+++.||+
T Consensus 187 ~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 262 (381)
T PRK03633 187 NHDSTSIWPMLKLRQAR---LG-VNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRF 262 (381)
T ss_pred CCCCCCHHHHHHhcchH---HH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 00011223333333222 11 111111222233445667888888899999999999999999999999999999999
Q ss_pred CCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhH
Q 010185 346 GRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQ 425 (516)
Q Consensus 346 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 425 (516)
++|+.+..+.....++.+.+.. ... ......+.+. ......|.....+.|..|++.++...
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~----------------~~~--~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 323 (381)
T PRK03633 263 GRLLVLRVQVFVVILGSIAMLS----------------QAA--MAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMN 323 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhh----------------hHH--HHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999888776666655443321 011 1111122222 22234566666677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 426 AINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 426 g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
+..+...++|+.++|.+.|.+.|+.++...+.+.+.+.+...+..+
T Consensus 324 ~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 324 QALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999998876666555555554444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=272.06 Aligned_cols=357 Identities=11% Similarity=0.026 Sum_probs=257.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----chhhhHHHHHHHhhhhccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA-----AVNIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~ 150 (516)
+.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999988888877665542 568899999999999999988
Q ss_pred ccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHH
Q 010185 151 NQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSIL 230 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 230 (516)
.+...+++.|++|+++|+++.++...+..+|..+||.+++.+.... +|++.|++.++..++..+..+.+|++++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---GVAWNYGLAAAGTFITLLPLLRLPALPPPPQ 204 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 8999999999999999999999999999999999999998876543 8999999888777766666666777642100
Q ss_pred hcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH
Q 010185 231 ERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF 310 (516)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (516)
++ ++ ..+ +.+..++..++++ ..........+ ... ......+.|.+.
T Consensus 205 --~~-~~----------------~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~-~~~-~~~~~~~~p~~~ 250 (417)
T PRK10489 205 --PR-EH----------------PLR----------SLLAGFRFLLASP---VVGGIALLGGL-LTM-ASAVRVLYPALA 250 (417)
T ss_pred --cc-cc----------------chH----------HHHHHHHHHHcCh---HHHHHHHHHHH-HHH-HHhHHHhhHHHH
Confidence 00 00 000 0001122233322 21211111111 111 234455677777
Q ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHH
Q 010185 311 KT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFV 389 (516)
Q Consensus 311 ~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (516)
++ .|.++...+++....+++.+++.++.+++.||.++++.+..+..+.+++.+++... ++.+..
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~ 315 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---------------PMWILA 315 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---------------chHHHH
Confidence 77 79999999999999999999999999999999877777777766666555544321 122222
Q ss_pred HHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch-hhHHHHHHHHHHHHHH
Q 010185 390 LFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF-GLFFFFAGFVAVMTVF 468 (516)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 468 (516)
....++++.+. ....+...+++.|..|++.||++.|+.+...++|..++|.+.|.+.+..++ ..+...+++..+.+++
T Consensus 316 ~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 316 VLCLALFGYLS-AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 22222222222 122345556777999999999999999999999999999999999998885 4455566666666677
Q ss_pred HhhcccCCCCCCHHHHH
Q 010185 469 VFYMVPETRNVPIEEMN 485 (516)
Q Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (516)
....+++.|+++.+|++
T Consensus 395 ~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 395 LLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHhccccccccccccc
Confidence 66777777766655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=267.22 Aligned_cols=382 Identities=13% Similarity=0.128 Sum_probs=264.9
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY 107 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~ 107 (516)
..++++.+...++...+++. .|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 72 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRV 72 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777766554 36666665 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHH
Q 010185 108 GRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANL 187 (516)
Q Consensus 108 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 187 (516)
|||++++.+.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.
T Consensus 73 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 152 (471)
T PRK10504 73 GVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA 152 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHH---------HHhCCCC--c-HHH
Q 010185 188 VNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQ---------KIRGTPN--V-DEE 254 (516)
Q Consensus 188 i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~---------~~~~~~~--~-~~~ 254 (516)
+++.+.+. .+||+.|++......+..+.... .|+.+. .+.+.+....... ...+.+. . ...
T Consensus 153 ~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (471)
T PRK10504 153 LGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLA 226 (471)
T ss_pred HHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHH
Confidence 98887654 48999999987776665554443 454431 1112121111000 0001100 0 000
Q ss_pred HHHH--------HHHHHHhhhccCc--hhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHH
Q 010185 255 FQDL--------YDASEAAKQVHHP--WTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMS 323 (516)
Q Consensus 255 ~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 323 (516)
.... .....+++..+.+ ..++++++ +.... ....+...........+.|++++. .|.++.++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 302 (471)
T PRK10504 227 IAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTR---TFSLG-LAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLM 302 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhccc---chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 0000 0000001111111 11233333 22222 222333333445566778888875 79999999999
Q ss_pred HHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcC
Q 010185 324 AVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWS 403 (516)
Q Consensus 324 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (516)
.....++.+++.++.+++.||+++|+.+..+..+.++...++.... ...+.+.......+.+.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~ 370 (471)
T PRK10504 303 MIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA------------LLGWYYLLPFVLFLQGMVNSTR 370 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc------------ccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777776665554421 0111111122222222222222
Q ss_pred cccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch
Q 010185 404 WGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF 452 (516)
Q Consensus 404 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~ 452 (516)
.+.......+..|++.++.++|+.++...+|..+++.+.|.+.+..++
T Consensus 371 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 371 -FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred -HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233345556788999999999999999999999999999999887654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=257.74 Aligned_cols=333 Identities=15% Similarity=0.111 Sum_probs=235.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh--------chhhhHHHHHHHhhhhc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA--------AVNIAMLIIGRLMLGVG 146 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~ 146 (516)
+|+|..+.|++.+++.+++.++++++|+++||+|||+++..+.+...++.+.+.. .++++.++++|+++|++
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 125 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFG 125 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999998887776554322 35889999999999999
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+... .+||+.+++..+..++........||.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 126 ESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred HHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999998877643 4899887766555444333322234432
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 227 NSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
+. + + .+.+.++..+....+. .. .. ...........+.
T Consensus 203 ~~---~----~------------------------------~~~~~~~~~~~~~~~~-~~-~~----l~~~~~~~~~~~~ 239 (392)
T PRK12382 203 AH---A----G------------------------------ERPSLWSVVGLIWKPG-LG-LA----LQGVGFAVIGTFV 239 (392)
T ss_pred CC---c----c------------------------------cCchHHHHHHHHHHhH-HH-HH----HHHHHHhHHHHHH
Confidence 10 0 0 0000111111000111 11 11 1112233445566
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 010185 307 PVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDA 386 (516)
Q Consensus 307 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (516)
|.++++.+++. .+......+++.++++++.+++.||+++|+.+..+..+..++.+++... ++.
T Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 302 (392)
T PRK12382 240 SLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---------------PTA 302 (392)
T ss_pred HHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---------------ccH
Confidence 66667766653 4566667778888999999999999999999888877777766554431 122
Q ss_pred HHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH
Q 010185 387 DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
+.......+.+.+.+. ..+.......|.+|++.|+++.|+.+....++..++|.+.+.+.++.++...+.+.+.+.+.+
T Consensus 303 ~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 303 WVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 2223333333333222 234444555688899999999999999999999999999999999988876666666655555
Q ss_pred HHHhh
Q 010185 467 VFVFY 471 (516)
Q Consensus 467 ~~~~~ 471 (516)
.+..+
T Consensus 382 ~~~~~ 386 (392)
T PRK12382 382 IIVTI 386 (392)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=255.23 Aligned_cols=346 Identities=15% Similarity=0.081 Sum_probs=239.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-----hhhhHHHHHHHhhhhccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-----VNIAMLIIGRLMLGVGVG 148 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~ 148 (516)
|+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++++++ +|++.+++.|++.|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 459999999999999999999999999999999999999999999999999999987 8999999999999998 7
Q ss_pred ccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhc------cc---------cCCcchhHHHHHhHHHHH
Q 010185 149 FANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA------KI---------SGGWGWRVSLALAAVPAI 213 (516)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~------~~---------~~~~~wr~~f~~~~~~~~ 213 (516)
..++.....+++|+|+++||+++++.....++|..+++++...+. .. .+..+||.++++..++.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 788999999999999999999999997666666665554432211 00 113358988888888777
Q ss_pred HHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHH
Q 010185 214 LMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPF 292 (516)
Q Consensus 214 ~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (516)
+..++.++ +++.|. .+.+.++.++..++++.++...+ .
T Consensus 223 v~~i~~~~~~~~~~~----------------------------------------~~~~~~~~~~vlk~~~~Wllsll-y 261 (462)
T PRK15034 223 IATIAAWSGMNDIAS----------------------------------------SRASIADQLPVLQRLHLWLLSLL-Y 261 (462)
T ss_pred HHHHHHHHhCCCccc----------------------------------------cccCHHHHHHHhCCCchhHHHHH-H
Confidence 66655555 444330 01112222222233444444444 4
Q ss_pred HHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHh
Q 010185 293 FQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 372 (516)
++.+..+..+..+.|++.++ .++............+...+.++++|+++||+|+|+++.++.+.+.++...+....
T Consensus 262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--- 337 (462)
T PRK15034 262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--- 337 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh---
Confidence 55666777788888888776 34433333334455677888899999999999999999988877766664433321
Q ss_pred cCCCCCCCcc-cchhHHHHHHHHHHHHhhhcCcccccceeecccCch---------------------hhhhhhHHHHHH
Q 010185 373 FGLRGEGTLT-KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL---------------------EIRSAGQAINVS 430 (516)
Q Consensus 373 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~ 430 (516)
+.. ..+.+...........+.+.+.. ..+-++.+.+|+ ++.|.+.|+...
T Consensus 338 -------p~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a 409 (462)
T PRK15034 338 -------PGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISA 409 (462)
T ss_pred -------ccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHH
Confidence 100 01122222222222233333322 334444566663 256889999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcc-hh-hHHHHHHHHHHHHHHHhhcc
Q 010185 431 TNMIFTFVVGQVFLSMLCHFK-FG-LFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 431 ~~~~g~~i~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~ 473 (516)
.+.+|+++.|.++|...+..| +. .++.+.+...++..+.+++.
T Consensus 410 ~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 410 IGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998877 43 34444444444545544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=268.90 Aligned_cols=384 Identities=14% Similarity=0.149 Sum_probs=269.9
Q ss_pred HHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHh
Q 010185 26 TCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTR 105 (516)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d 105 (516)
+...++++.+...+|..+.+... |.+.+++ |.+..+.+++.+.+.++..++.++.|+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 62 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAI--PTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAK 62 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 45567777888889988877554 6666655 889999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHH
Q 010185 106 MYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIA 185 (516)
Q Consensus 106 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 185 (516)
|+|||+++.++.++++++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++
T Consensus 63 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 142 (485)
T TIGR00711 63 RFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALG 142 (485)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcCCHHHHHHH--------H--H-HHhCCCCc-H
Q 010185 186 NLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERGHVDEAKKM--------L--Q-KIRGTPNV-D 252 (516)
Q Consensus 186 ~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~--------~--~-~~~~~~~~-~ 252 (516)
|.+++.+.+ +.+||+.|++.++++++..+... ++||+++. .+++.+..... . . ......+. +
T Consensus 143 ~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (485)
T TIGR00711 143 PTLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFD 217 (485)
T ss_pred hccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999887764 35999999998887776655443 36665431 11111111000 0 0 00011111 0
Q ss_pred H-HHH-HH-------HHHHHHhhhccCch--hhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhH
Q 010185 253 E-EFQ-DL-------YDASEAAKQVHHPW--TNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEAS 320 (516)
Q Consensus 253 ~-~~~-~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~ 320 (516)
. +.. .. ......+.+.+.+. .+.++++. ..... +..+.....+.....+.|.++++ .|+++.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~ 293 (485)
T TIGR00711 218 SNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRN---FTIGC-VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQA 293 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCC---hHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 000 00 00000111111121 23333322 22222 22233333444566677877766 69999999
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhh
Q 010185 321 LMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAF 400 (516)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (516)
++...+..++.+++.++.+++.||++||+.+..+..+.+++..++.... ..+...+.......+.+.+.
T Consensus 294 g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~g~g~ 362 (485)
T TIGR00711 294 GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF-----------TPDTPFLAIALPQFIRGFGM 362 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC-----------CCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777776666554210 01112222222233333333
Q ss_pred hcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 401 AWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
+....+.. ....+..|++.++++.|+.+..+.+|+.+++.+.+.+.++.
T Consensus 363 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 363 GCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33323333 33347789999999999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=258.55 Aligned_cols=366 Identities=15% Similarity=0.107 Sum_probs=246.5
Q ss_pred HHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchh-----HHHHHHHHHHHHHHHHHhhHHHHh
Q 010185 31 AMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQL-----LTLFTSSLYLAALVASFFASVVTR 105 (516)
Q Consensus 31 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~l~~~i~~~~~g~l~d 105 (516)
.++.+..++......+.. |.+.+++ |++..+ .+++.+++.++..+++++.|+++|
T Consensus 20 ~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 79 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFL--PLYVEQL------------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD 79 (408)
T ss_pred HHHHHHHHHHHHHhhhhH--HHHHHHh------------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555544433 6666655 555443 589999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHH
Q 010185 106 MYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIA 185 (516)
Q Consensus 106 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 185 (516)
|+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++
T Consensus 80 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (408)
T PRK09874 80 RKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLG 158 (408)
T ss_pred hhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 567778889999999999999999999999999999
Q ss_pred HHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 010185 186 NLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEA 264 (516)
Q Consensus 186 ~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (516)
|.+++.+... .+||+.|++.+++.++..+... ++||.++... + ++ ..+
T Consensus 159 ~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~-----------------------~~~- 207 (408)
T PRK09874 159 PLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCIRENFQPVS---K-KE-----------------------MLH- 207 (408)
T ss_pred HHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccCccccc---c-hh-----------------------hhH-
Confidence 9998877643 3899999998887766555443 3666531100 0 00 000
Q ss_pred hhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCch----hHHHHHHHHHHHHHHHhHhHhh
Q 010185 265 AKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAE----ASLMSAVITGVVNVVATLVSVF 340 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~~~g~ 340 (516)
.+ ...+.++ +++.+.......+...........+.+.+..+.+.+.. ..+......+++.+++.+..++
T Consensus 208 ~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~ 280 (408)
T PRK09874 208 MR----EVVTSLK---NPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGK 280 (408)
T ss_pred HH----HHHHhCc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111 22222212111111112222333445555554322222 2355566677888888999999
Q ss_pred hhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh
Q 010185 341 SVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI 420 (516)
Q Consensus 341 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 420 (516)
+.||++||+.+..+.....+..+..... ++.+.......+.+.+ .....+.......+..|++.
T Consensus 281 l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 344 (408)
T PRK09874 281 LGDRIGPEKILITALIFSVLLLIPMSFV---------------QTPLQLGILRFLLGAA-DGALLPAVQTLLVYNSSNQI 344 (408)
T ss_pred HHhccccchhHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHhh-hHhhHHHHHHHHHHhCCccc
Confidence 9999999998887776665555443331 1222222222222322 22334444455567788899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 421 ~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
+|+.+++.+....+|..++|.+.|.+.+..++...+...++..+.+.+..+
T Consensus 345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 345 AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988876666665555555444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=263.03 Aligned_cols=372 Identities=14% Similarity=0.075 Sum_probs=241.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc----hhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA----VNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 7899999999999999999999999999999999999999999999999888765 467788899999999999999
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSIL 230 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~ 230 (516)
+.....+.|++|+++|++++++.+.+..+|..+++.+.+..... ..+||+.|++.++++++..+. .+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 98999999999999999999999999999999988775543221 238999999988887775544 445888774321
Q ss_pred hcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCc-hhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 010185 231 ERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHP-WTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL 309 (516)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (516)
.++ .++. +.+...+ . . ++.+.+.+.+.. .+.+++ .+..+.. .+..+......+....+.|.+
T Consensus 215 ~~~-~~~~-------~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 215 LPP-IEEY-------RNDYPDD-Y-N---EKAEQELTAKEIFMQYVLP---NKLLWYI-AIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred CCC-chhc-------ccccccc-c-c---cccccccchHHHHHHHHcc---CchHHHH-HHHHHHHHHHHHHHHHhHHHH
Confidence 100 0000 0000000 0 0 000000000000 011222 2223332 222223333445566788888
Q ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHH
Q 010185 310 FKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADF 388 (516)
Q Consensus 310 ~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (516)
+++ .|+++.++++...+..+.++++.++.+++.||+++++....+........+...... . . ...+.+.
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~~~~~ 347 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--------N-PAGNPLV 347 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--------c-CCCchHH
Confidence 776 699999999999999999999999999999999654322223222222111111110 0 0 0011121
Q ss_pred HHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHH-HHHHHHhHHHHhhcchhhHHH-HHHHHHHHH
Q 010185 389 VLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFT-FVVGQVFLSMLCHFKFGLFFF-FAGFVAVMT 466 (516)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 466 (516)
........+.. ..+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.|+.|+...+. ..++.++..
T Consensus 348 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~ 426 (438)
T TIGR00712 348 DMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 426 (438)
T ss_pred HHHHHHHHHHH-HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHH
Confidence 11111121111 112111222345689999999999999999988875 689999999999888755544 444444555
Q ss_pred HHHhhcccCCC
Q 010185 467 VFVFYMVPETR 477 (516)
Q Consensus 467 ~~~~~~~~~~~ 477 (516)
+...+..+|.|
T Consensus 427 ~~~~~~~~~~~ 437 (438)
T TIGR00712 427 ILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHhhcc
Confidence 55555555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=258.12 Aligned_cols=328 Identities=13% Similarity=0.052 Sum_probs=242.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch-----hhhHHHHHHHhhhhccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV-----NIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~ 150 (516)
+.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++++ +++.+++.|+++|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999988888 9999999999999999999
Q ss_pred ccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc--CCCChHH
Q 010185 151 NQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF--LPDTPNS 228 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~ 228 (516)
.+...+++.|++|+++|++++++...+..+|.+++|.+++.+.... +||+.|++.++..++..+..+. .||.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL---GIKWAIWVDAVGFAISALLIVSVRIPELAAS 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 9999999999999999999999999999999999999988876543 8999999887766655544333 3333210
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
++ ++ .+++ ..++.+..++..++++ ......................+.|+
T Consensus 187 ----~~-~~-------------~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (365)
T TIGR00900 187 ----EI-QA-------------LSNA---------VLRDTREGIKFVLKNP---LLRTLLLLALLFNLVFAPAIVALFPY 236 (365)
T ss_pred ----cc-cc-------------cchh---------HHHHHHhHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00 00 0000 0000111233344332 22222222222222222223367788
Q ss_pred HHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhH
Q 010185 309 LFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDAD 387 (516)
Q Consensus 309 ~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (516)
+.++ +|.++.+.+.......++.+++.++.+++.||.+||+.+..+..+.+++...+... +++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 302 (365)
T TIGR00900 237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--------------PPNFP 302 (365)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--------------chhHH
Confidence 8776 79999999999999999999999999999999999998887766666555554432 01122
Q ss_pred HHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 388 FVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
......++.+.+. ....+....+..|..|++.|+++.|+.+....++..++|.+.|.+.|..|
T Consensus 303 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 303 LFLVLWFAIGVGY-GPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223333333322 23345666777899999999999999999999999999999999988653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=266.64 Aligned_cols=349 Identities=14% Similarity=0.107 Sum_probs=236.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+...
T Consensus 26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHH-HHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIAN-LVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERG 233 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~ 233 (516)
+++.|++|+++|++++++...+..+|..+++ .++..+.. ..+||+.|++.+++.++..+. .++.||+|+....+.
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPP 182 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCc
Confidence 9999999999999999999999999999999 46554443 348999999888777665444 444777663211110
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-h
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-T 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (516)
..++. .++.+.+.+ +.+++.+..+...+++++++ ..+ ...+..+...........+.|.+++ .
T Consensus 183 ~~~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (379)
T TIGR00881 183 AEEMP---------NEEPDGDAE---KKEEELTKKQIFLQYVLLNK---VLW-YISLGYVFVYVVRTGILDWSPLYLTQE 246 (379)
T ss_pred cccCc---------ccccccccc---cccccccchHHHHHHHHhcc---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000000 00000000111122333322 222 2222233333334455666776665 4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
.|+++.+.+.......++.+++.++.+++.||..+|+...............+.... .....+.+.....
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 316 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW----------LNPAANPLMDLIC 316 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh----------cCcchhHHHHHHH
Confidence 799999999999999999999999999999986433222222222111111111110 0001112222222
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL 454 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~ 454 (516)
.. ..+.+..+..+....+..|..|++.|+++.|+.+....+++.++|.+.|.+.++.|+..
T Consensus 317 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 317 LF-ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HH-HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 22 22222223334445667799999999999999999999999999999999999887643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=256.95 Aligned_cols=323 Identities=13% Similarity=0.188 Sum_probs=234.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHHHhcCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSILERGH 234 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~ 234 (516)
+++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+... +.||+++... +.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 191 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQ 191 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCC
Confidence 9999999999999999999999999999999998876643 3899999998877766655443 4676542100 000
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hc
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TI 313 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 313 (516)
. ++....+++.++++ +.+..... .............+.|.+++ +.
T Consensus 192 ~------------------------------~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 237 (385)
T TIGR00710 192 I------------------------------STYFETFLLLLKSK---MFWGYALI-YGASFGGFFAFFSGAPFVYIDIM 237 (385)
T ss_pred H------------------------------HHHHHHHHHHHcCc---hhHHHHHH-HHHHHHHHHHHHHcChHHHHHHc
Confidence 0 00001122333322 22222222 22222233445556676655 67
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH-
Q 010185 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL- 392 (516)
Q Consensus 314 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 392 (516)
|.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++.+++...... ..........
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 306 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL-----------GLGSWAMIIGP 306 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccchHHHHHHH
Confidence 9999999999999999999999999999999999998888777766666655443211 0011222222
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
..+.+.+.+ ...+.......|..| +.++++.++.+.....++.+.+++.+.+.+.
T Consensus 307 ~~~~g~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 307 MMFVGIGNS-MISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 222222222 223444555567777 6789999999998888777777777744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=254.44 Aligned_cols=347 Identities=15% Similarity=0.114 Sum_probs=231.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHH---h-chhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIING---A-AVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++. + .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999999877653 3 3588899999999999998888
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHH-HHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGI-LIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSI 229 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~ 229 (516)
+...+.+.+++|+++|++++++...+.++|. +++|++++.+... .||+..+|.......+..++ .++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888889999999999999999999999997 6889887765533 37655554433332222222 22344432100
Q ss_pred HhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 010185 230 LERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL 309 (516)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (516)
++++.+ +.+ +.+..++.++++ ++.+... +..+...........+.|.+
T Consensus 201 -~~~~~~-----------------~~~----------~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 -HMQTRE-----------------KFS----------ELGKAATILFTN---PNVLLGG-MVRIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -cccCCc-----------------chh----------hHHHHHHHHHcC---hhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 000000 000 000112233332 2233332 22333444556677788988
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHH-hhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHH
Q 010185 310 FKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFL-EGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADF 388 (516)
Q Consensus 310 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (516)
.++.|++..+.+.......++.+++.++.|+++||++||+.+. .+.....++...+...... ..++.+.
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~----------~~~~~~~ 318 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH----------FGHSFAV 318 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc----------cCCcHHH
Confidence 8889999999999889999999999999999999999887664 2233333332222221100 0012222
Q ss_pred HHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHH
Q 010185 389 VLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVF 468 (516)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (516)
......+.+.+.+ ...+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+.+.+++.+++.+
T Consensus 319 ~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~ 395 (402)
T TIGR00897 319 ALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF 395 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 2222333333322 223332 34456655 68999999999999999999999999999998865554444444444433
Q ss_pred Hh
Q 010185 469 VF 470 (516)
Q Consensus 469 ~~ 470 (516)
..
T Consensus 396 ~~ 397 (402)
T TIGR00897 396 LT 397 (402)
T ss_pred HH
Confidence 33
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=253.72 Aligned_cols=362 Identities=13% Similarity=0.207 Sum_probs=268.1
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhhhcccc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLGVGVGF 149 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 149 (516)
+.++++++.+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++.+++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 668999999999999999999999999999999999999999999999999999999884 556889999999999999
Q ss_pred cccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHH
Q 010185 150 ANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNS 228 (516)
Q Consensus 150 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~ 228 (516)
.+|+...+.+.|.|++||++..++...+..+|.+++.++++.+-+. ..||+.+|++.++++++..+++++ ..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999998887755 259999999999999998887766 7777732
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHh---hhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHh
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAA---KQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFY 305 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (516)
++.-.++ |.+.+.+.+.++ ++.+.|++++++++. ++...+..+....++..+..|
T Consensus 223 --h~~is~~----------------El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 --HPNISEK----------------ELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred --CCCCCHH----------------HHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 111111111111 114678999887543 555566667777788889999
Q ss_pred HHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc---------hHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 010185 306 APVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR---------VLFLEGGVQMFICQCLVGIMLALKFGL 375 (516)
Q Consensus 306 ~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (516)
.|.|+++ +|++..+.|+..++..+...+..+++|.++||+.+| -.-.++....++.++.+.+.
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------- 353 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------- 353 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-------
Confidence 9999887 699999999999999999999999999999998653 22233444444444444332
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh---cch
Q 010185 376 RGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH---FKF 452 (516)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~---~g~ 452 (516)
+..+.+..+.+..+.....+...... +.-..+.. +++.+..+|+.+....+.++++|.+.+.+... ..|
T Consensus 354 ------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 354 ------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred ------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 11122233333333222222222111 11111324 48899999999999999999999999999842 236
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 010185 453 GLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (516)
...+.+.++..+++.+.+.+
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHHHHHHhchheeE
Confidence 55555555555555444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=254.45 Aligned_cols=376 Identities=16% Similarity=0.192 Sum_probs=251.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHh
Q 010185 20 TSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFF 99 (516)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (516)
..+.++.+++.++.+.++..|...+..+. +.. ++.+|++++..|++.+.+.+.+.+++|+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~--~~v------------------~~~fni~~s~~Gll~~vf~v~~~i~sPl 87 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVL--KEV------------------QTYFNISDSELGLLQTVFIVVFMIASPL 87 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhh--HHH------------------HHhcCCCchhccchhHHHHHHHHHHHHH
Confidence 44566677778888899999988766543 222 4455999999999999999999999999
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHH
Q 010185 100 ASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179 (516)
Q Consensus 100 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 179 (516)
+|+++|||+||+++.+|..+|.++.++++++..+|+++++|.+.|+|.+...++.+++++|.+|.++|++.+++++.+..
T Consensus 88 ~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip 167 (493)
T KOG1330|consen 88 FGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP 167 (493)
T ss_pred HHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHH
Q 010185 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDL 258 (516)
Q Consensus 180 ~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (516)
+|..+|.+.+..+.+... .|||.|+..+++++++.++.++ .+|++|- ..++. .+++
T Consensus 168 vGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~--------- 224 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGEN--------- 224 (493)
T ss_pred cccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCC---------
Confidence 999999999988887764 4999999999999988877655 6665421 00000 0000
Q ss_pred HHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH----HhcCCCchhHHHHHHHHHHHHHHH
Q 010185 259 YDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF----KTIGFGAEASLMSAVITGVVNVVA 334 (516)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~s~~~~~~~~~~~~~~~~~~ 334 (516)
+..++....++++..-. +.+.+....+...........+.+|.|.+. +-.|++.++..++..+...++.+|
T Consensus 225 ----~~~~~~ts~~kDl~~l~-~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lG 299 (493)
T KOG1330|consen 225 ----KMVKPFTSVWKDLKVLA-KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLG 299 (493)
T ss_pred ----cCCCCccchHHHHHHHH-ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhh
Confidence 00011112233332211 101111111222222222334555555443 334778888888888899999999
Q ss_pred hHhHhhhhcccCCc----hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccce
Q 010185 335 TLVSVFSVDKFGRR----VLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWL 410 (516)
Q Consensus 335 ~~~~g~l~d~~g~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (516)
.+++|.++||+.|+ ......-+.++.+......+.... ...........+.+++++............-
T Consensus 300 vl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~-------~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~ 372 (493)
T KOG1330|consen 300 VLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF-------PAFTSSSMIFGLILFLVGETISWFNWATNNP 372 (493)
T ss_pred heehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999995321 111222221111111111111000 0001122222222222222222222233344
Q ss_pred eecccCchhhhhhhHHHHHHHHHHHHHHH-HHHhHHHHhhc
Q 010185 411 VPSEVCALEIRSAGQAINVSTNMIFTFVV-GQVFLSMLCHF 450 (516)
Q Consensus 411 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~~~~~~~~~~ 450 (516)
+..|+.|++.|.+++++...+..+.+-.+ |++.|.+.|+.
T Consensus 373 i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 373 IFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred eeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 44599999999999999888776555444 54999988864
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=237.80 Aligned_cols=378 Identities=15% Similarity=0.109 Sum_probs=274.6
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
+..++.+.+........|..++-.+.+++. + ++|+|+|+.|.+++.++..+...+..
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~-----i------------------~~~~~LS~~q~~ll~aiPil~GallR 66 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVF-----I------------------KSDFGLSEGQKGLLVAIPILVGALLR 66 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhh-----h------------------ccccCCCHHHHHHHHHHHHHHhHHHH
Confidence 445555555555655566666655544322 1 34559999999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhh---HHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIA---MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGF 174 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 174 (516)
++.|.+.||+|.|++..++.++..+.++..+++.+.+ ++++++++.|++.+ .+.+...++++||||+++|.++|+.
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~ 145 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIA 145 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHh
Confidence 9999999999999999999999999999999986555 99999999999855 8888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCcc---hhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCC
Q 010185 175 QMAITIGILIANLVNYGTAKISGGWG---WRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPN 250 (516)
Q Consensus 175 ~~~~~~G~~i~~~i~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 250 (516)
. ..++|..+..+++..+.... + ||....+..+..++..+..++ +.|.|...
T Consensus 146 g-~GN~G~av~q~~~P~v~~~~---g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r--------------------- 200 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAVAF---GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR--------------------- 200 (417)
T ss_pred c-cccccHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh---------------------
Confidence 9 77888777766655554333 5 999998888887776665554 77776110
Q ss_pred cHHHHHHHHHHHHHhhhcc-CchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHH
Q 010185 251 VDEEFQDLYDASEAAKQVH-HPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITG 328 (516)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (516)
...++.. ...+.+++ +++.| .+.+.++..+.++..+..+.|.++++ +|.++.+++.......
T Consensus 201 ------------~~~~~~~~~~~~~v~~---~~~~W-~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~ 264 (417)
T COG2223 201 ------------ASVKPQLPAQLKAVFS---NKDTW-LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP 264 (417)
T ss_pred ------------ccccccchhHHHHHhc---CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 0000001 12223332 33334 44444666777788888899877765 7999999999999999
Q ss_pred HHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccc
Q 010185 329 VVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLG 408 (516)
Q Consensus 329 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (516)
+.+.+.++++|+++||+|.+|.+...+..++++.......... .....+.............+.+.+ +...
T Consensus 265 ~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~l~l~~~~G~G-nGsv 335 (417)
T COG2223 265 LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG--------FGHGGSFVVFVAVFLALFVFAGLG-NGSV 335 (417)
T ss_pred HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc--------cccCcchHHHHHHHHHHHHHhccC-cchh
Confidence 9999999999999999999999998888888888877763211 000112222222223333333333 4455
Q ss_pred ceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHHh
Q 010185 409 WLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFVF 470 (516)
Q Consensus 409 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 470 (516)
+-++...+| ++.|.+.|+...++.+|++..|...+...+..+ +...+.+.....+++.+..
T Consensus 336 fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 336 FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 666767887 578999999999999999999999999999988 4444444444444444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=256.35 Aligned_cols=367 Identities=19% Similarity=0.249 Sum_probs=248.6
Q ss_pred HhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHH-----HHHHHHHHHHhhHHHHhhhch
Q 010185 35 LLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSS-----LYLAALVASFFASVVTRMYGR 109 (516)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~-----~~l~~~i~~~~~g~l~dr~Gr 109 (516)
+.+.+|...+++.. +.+.++++. +.++.+.+.+.+. ..++..+++++.|+++||+||
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~ 64 (394)
T TIGR00883 3 AVEWFDFYLYGFAA--VLVFHTFFP----------------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGR 64 (394)
T ss_pred chhHHHHHHHHHHH--HHHHHHhcC----------------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Confidence 45566666665443 444444431 2345555554443 334445789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHH
Q 010185 110 KMSMTVGGISFLIGAIINGAAVNIA--------MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIG 181 (516)
Q Consensus 110 r~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 181 (516)
|+++.++.++..++.++++++++++ .++++|+++|++.+...+....++.|++|+++|++..++...+..+|
T Consensus 65 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 144 (394)
T TIGR00883 65 KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 9999999999999999999999875 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccc-----cCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 182 ILIANLVNYGTAKI-----SGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 182 ~~i~~~i~~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
.++++.++..+... .+.++||+.|++.+++.++..+.....||+|++..++
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 200 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ------------------------ 200 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH------------------------
Confidence 99999887665431 1345899999988777766655555577776321110
Q ss_pred HHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH-HhcCCCchhHHHHHHHHHHHHHHHh
Q 010185 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF-KTIGFGAEASLMSAVITGVVNVVAT 335 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~ 335 (516)
+++++.+.+.++.++++. ++.+..... .+...........+.|.+. ++.|.++.+.+.......+..+++.
T Consensus 201 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 272 (394)
T TIGR00883 201 ------EKHKKKRGPIRETLTKHR-KPFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI 272 (394)
T ss_pred ------hccccccCCHHHHHHhch-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 001111233444444322 123333322 3333334455666777777 4578999999999999999999999
Q ss_pred HhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeeccc
Q 010185 336 LVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEV 415 (516)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (516)
++.+++.||++||+.+.....+..+.......... ...+.+.......+...+.+ ...+....+..|.
T Consensus 273 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 340 (394)
T TIGR00883 273 PLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-----------DSGSFTLFFFLVLGLALIGG-MYTGPMGSFLPEL 340 (394)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-----------cCCchHHHHHHHHHHHHHHH-HHhhhHHHHHHHh
Confidence 99999999999998776554444333221111110 00122222222222333222 3345566777899
Q ss_pred CchhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHH
Q 010185 416 CALEIRSAGQAINV-STNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVA 463 (516)
Q Consensus 416 ~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~ 463 (516)
+|++.|+++.++.+ ....++..++|.+.|.+.++.+ +...+.....+.
T Consensus 341 ~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 341 FPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred CCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99999999999854 5566888899999999999887 555444444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=248.25 Aligned_cols=344 Identities=20% Similarity=0.287 Sum_probs=275.2
Q ss_pred HHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhch
Q 010185 30 AAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGR 109 (516)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 109 (516)
++++.+..+++....++.. |.+.+++ |.+..+.+++.+.+.++..+++++.|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~ 63 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPAL--PLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63 (352)
T ss_pred HHHHHHHHHHhhhhhHhhH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence 3445566666666655443 5555544 7799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHH
Q 010185 110 KMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVN 189 (516)
Q Consensus 110 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 189 (516)
|+.+..+.++..++.+++.++++++.++++|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.++
T Consensus 64 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 143 (352)
T cd06174 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG 143 (352)
T ss_pred chhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhcc
Q 010185 190 YGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVH 269 (516)
Q Consensus 190 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (516)
+.+.+.. +||+.+++.+++.++..+...+++
T Consensus 144 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 174 (352)
T cd06174 144 GLLAESL---GWRWLFLILAILGLLLALLLLFLL---------------------------------------------- 174 (352)
T ss_pred HHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 8877543 799999998888777665544321
Q ss_pred CchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc-CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc
Q 010185 270 HPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI-GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR 348 (516)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (516)
+ ..+...+..+...........+.|.+.++. |.+..+.+.......++..++.++.+++.||++||
T Consensus 175 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (352)
T cd06174 175 ------------R-LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241 (352)
T ss_pred ------------H-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 122233334444455566777788777765 89999999999999999999999999999999999
Q ss_pred h-HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH
Q 010185 349 V-LFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI 427 (516)
Q Consensus 349 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 427 (516)
+ .+..+..+..++.+.+... ++ ...........+.......+....+..|..|+++|++..|+
T Consensus 242 ~~~~~~~~~~~~i~~~~~~~~---------------~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd06174 242 RLLLLIGLLLAALGLLLLALA---------------PS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHh---------------cc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHH
Confidence 9 8888888777777766652 12 22333333333333444567777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 428 NVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 428 ~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
.+....++..+++.+.+.+.+..++...+...++..+.+.+...
T Consensus 306 ~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 306 FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999888876666666655555554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=250.97 Aligned_cols=343 Identities=14% Similarity=0.172 Sum_probs=239.8
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHH-HHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTV-GGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
++|.++.+.|++.+++.++..+.+++.|+++||+||||.++. +.++..++.++++++++++.+++.|+++|.+.+...|
T Consensus 27 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p 106 (375)
T TIGR00899 27 EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANP 106 (375)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHH
Confidence 348899999999999999999999999999999999887654 6666677888899999999999999999988888888
Q ss_pred chhhhhhccCCcCccchh--HHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-cCCCChHHH
Q 010185 153 VVPVYLSEMAPAKVRGAL--NIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-FLPDTPNSI 229 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~ 229 (516)
...++..|+.|+++|++. .+....+.++|.+++|++++.+.+. .+||+.|++.+++.++..+..+ ++||.|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T TIGR00899 107 QLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA 183 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence 888899999887777654 5788888899999999998877643 4899999999888776655544 488876321
Q ss_pred HhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 010185 230 LERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL 309 (516)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (516)
..+ + .+.+.++.++++..+.......+ ..........+.|.+
T Consensus 184 ~~~----~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 225 (375)
T TIGR00899 184 PGA----L------------------------------TRLEVRGLLASRDTRLLFVACTL----MWGCNILYIINMPLL 225 (375)
T ss_pred ccc----c------------------------------CcchhhhhhcCcchHHHHHHHHH----HHHHHHHHHhhhHHH
Confidence 000 0 00011112222222211111111 111222334455655
Q ss_pred H-HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHH
Q 010185 310 F-KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADF 388 (516)
Q Consensus 310 ~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (516)
+ ++.|.++.+.+..........+++.++.+++.||++||+.+..+.....+....+... ++.+.
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 290 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---------------NSLWA 290 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 5 5579999998888887777888889999999999999998877665544433332221 12222
Q ss_pred HHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHH
Q 010185 389 VLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVF 468 (516)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (516)
......+...+.+ ...+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..++...+.+.+++.+.+.+
T Consensus 291 ~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 291 LLMLQLLNAIFIG-ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 2222222222222 2234555666788875 5679999999999999999999999999988877666666666666666
Q ss_pred Hhhccc
Q 010185 469 VFYMVP 474 (516)
Q Consensus 469 ~~~~~~ 474 (516)
...+++
T Consensus 369 ~~~~~~ 374 (375)
T TIGR00899 369 CLLLIK 374 (375)
T ss_pred HHheec
Confidence 555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=252.64 Aligned_cols=323 Identities=14% Similarity=0.147 Sum_probs=234.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCH
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHV 235 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 235 (516)
+++.|++|++++++..+.......+|..++|.+++.+... .+||+.|++.+++.++..+..++++|+++. ++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~- 188 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKKA----RK- 188 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-
Confidence 9999999999999999999989999999999998877643 489999999888877766655555554410 00
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCC
Q 010185 236 DEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGF 315 (516)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (516)
++ +++.++++.++++. .+....+ .......+.....+.|.+.++.|+
T Consensus 189 ~~-----------------------------~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~g~ 235 (401)
T PRK11043 189 QS-----------------------------QDALTFKQLLKSKT---YLGNVLI-FAACSAAFFAWLTGSPFILEQMGY 235 (401)
T ss_pred cc-----------------------------hHHHHHHHHHcChh---HHHHHHH-HHHHHHHHHHHHHHhHHHHHHcCC
Confidence 00 00112233333222 1111111 111222334455677888888899
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHH
Q 010185 316 GAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICA 395 (516)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (516)
++.+.++......++.+++.++.+++.||+++|+.........+++.+.+...... ..+..+..+....+
T Consensus 236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 305 (401)
T PRK11043 236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL----------SHPSLVPLLIPFCV 305 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCcHHHHHHHHHH
Confidence 99999988888888999999999999999999887766555555544433322111 00122222222222
Q ss_pred HHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 396 YVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
...+.+ ...+.......|..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 306 ~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 306 MAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 333222 334444444446666 679999999999999999999999998877543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-30 Score=249.66 Aligned_cols=366 Identities=13% Similarity=0.082 Sum_probs=244.7
Q ss_pred HHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc
Q 010185 29 VAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYG 108 (516)
Q Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G 108 (516)
...+..+....+...+.+.. |.+.+++ |.+..+.++..+++.+++.++++++|+++||+|
T Consensus 20 ~~~~~~~~~~~~~~~~~p~l--~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G 79 (413)
T PRK15403 20 ALILYDFAAYLTTDLIQPGI--INVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIG 79 (413)
T ss_pred HHHHHHHHHHHHHHhhccCH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcC
Confidence 33444455666666655443 6566655 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHH
Q 010185 109 RKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLV 188 (516)
Q Consensus 109 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i 188 (516)
||+++..+.++++++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|++
T Consensus 80 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 159 (413)
T PRK15403 80 RRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLS 159 (413)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887777778889999999999999999999999999999999
Q ss_pred HhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhh
Q 010185 189 NYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQ 267 (516)
Q Consensus 189 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (516)
++.+.+. .+||+.|++.++..++..+.. +.+||+++. +++.. + . +.
T Consensus 160 g~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-------------~----~----------~~ 206 (413)
T PRK15403 160 GAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-------------S----A----------KS 206 (413)
T ss_pred HHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC-------------C----h----------HH
Confidence 9877643 499999999988877766543 448887521 00000 0 0 00
Q ss_pred ccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccC
Q 010185 268 VHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFG 346 (516)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (516)
...++++++++ ++++... +..+........+..+.|.++++ .|+++.+.++.......+.+++..+.+++.++..
T Consensus 207 ~~~~~~~ll~~---~~~~~~~-l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~ 282 (413)
T PRK15403 207 VLRDFRNVFRN---RLFLTGA-ATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPT 282 (413)
T ss_pred HHHHHHHHHcC---HHHHHHH-HHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 00122333332 3333322 22333333444555667877766 5999999999988888888888888887765554
Q ss_pred CchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHH
Q 010185 347 RRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQA 426 (516)
Q Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 426 (516)
+++.......+..++.+++...... ..+..+......+++..+.+... |...... ..-....+|++.+
T Consensus 283 ~~~~~~~~~~~~~ig~~l~~~~~~~----------~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a 350 (413)
T PRK15403 283 EPRFIWRAVPIQLVGLALLIVGNLL----------WPHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSA 350 (413)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH----------ccccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHH
Confidence 4444333323333333332221100 00111112333333444433332 2222111 1112234799999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 427 INVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 427 ~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
+.+.....+...++...+++.+......+.....++.
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999999999999999998877644444444444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-30 Score=251.62 Aligned_cols=375 Identities=11% Similarity=0.094 Sum_probs=251.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHh
Q 010185 20 TSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFF 99 (516)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (516)
++..+..+...++..+..+++....++.. |.+.+++ |+++.+.+++.+.+.+++.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~ 80 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIP 80 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666788888876665443 5554444 899999999999999999999999
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHHHHH---HhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHH
Q 010185 100 ASVVTRMYGRKMSMTVGGISFLIGAIIN---GAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQM 176 (516)
Q Consensus 100 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 176 (516)
.|+++||+|||+++..+.++++++++++ .++++++.++++|+++|+|.+...+....++.|+.|+++|.+.+++.+.
T Consensus 81 ~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~ 160 (438)
T PRK10133 81 AGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT 160 (438)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHH
Confidence 9999999999999999999999999886 4689999999999999999999999999999998777777778999999
Q ss_pred HHHHHHHHHHHHHhhhcc-cc-------------C---C------cchhHHHHHhH-HHHHHHHHh-hccCCCChHHHHh
Q 010185 177 AITIGILIANLVNYGTAK-IS-------------G---G------WGWRVSLALAA-VPAILMTVG-SFFLPDTPNSILE 231 (516)
Q Consensus 177 ~~~~G~~i~~~i~~~~~~-~~-------------~---~------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~p~~~~~ 231 (516)
.+.+|..+++.++..+.. .. + . .+||++|+... +..++..+. ...+||.+..
T Consensus 161 ~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--- 237 (438)
T PRK10133 161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--- 237 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---
Confidence 999999999998765431 10 0 0 25777776433 333333332 2225553210
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH-H
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL-F 310 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 310 (516)
+ +.+ ++..+...+.+++++++..+ ..... .+...........|.+.+ .
T Consensus 238 ~-~~~--------------------------~~~~~~~~~~~~ll~~~~~~---~~~l~-~~~~~~~~~~~~~~~~~~l~ 286 (438)
T PRK10133 238 N-HSD--------------------------AKQGSFSASLSRLARIRHWR---WAVLA-QFCYVGAQTACWSYLIRYAV 286 (438)
T ss_pred c-ccc--------------------------ccccchhhhHHHHHhCchHH---HHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 0 000 00000011223344433222 22111 122222333334455544 4
Q ss_pred H-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHH
Q 010185 311 K-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFV 389 (516)
Q Consensus 311 ~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (516)
+ .+|+++.++++......++.++++++.+++.||+++|+.+..+..+..+.+++.... .....
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~----------------~~~~~ 350 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----------------GGHVG 350 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------------CChHH
Confidence 5 469999999999999999999999999999999999998887766655444433221 11122
Q ss_pred HHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHH
Q 010185 390 LFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTV 467 (516)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 467 (516)
.....+.+.+.+ ...|..++...|..|+ ..+++.++.. ...+++.++|++.|.+.|..| ....+++..++.+..+
T Consensus 351 ~~~~~l~glg~~-~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 351 LIALTLCSAFMS-IQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 223333333333 3456666666677774 4678888875 455789999999999999876 4444444444443333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=256.36 Aligned_cols=324 Identities=18% Similarity=0.289 Sum_probs=237.4
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++++.++++|++.|++.+...+
T Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 104 (352)
T PF07690_consen 25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP 104 (352)
T ss_dssp CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence 34488999999999999999999999999999999999999999999999977777778888999999999999999999
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHh
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILE 231 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~ 231 (516)
...+++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.+++.++..++. .+++++|+....
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 181 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIAAILFILFLPEPPPPRER 181 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT-
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhhhhhHhhhhhhccccccc
Confidence 9999999999999999999999999999999999998887744 389999999999988876642 345444321111
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccC-chhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH-
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHH-PWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL- 309 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 309 (516)
+++.++. ++.+++.. .++.+++++..+ ......+...........+.|.+
T Consensus 182 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 233 (352)
T PF07690_consen 182 ESPKESE------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYL 233 (352)
T ss_dssp -SSTTTT--------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccc------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhh
Confidence 1000000 00111111 244444433222 22222333333445577788876
Q ss_pred HHhcCCC-chhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHH
Q 010185 310 FKTIGFG-AEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADF 388 (516)
Q Consensus 310 ~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (516)
.+.+|++ ..+.+.......+..+++.++.+++.||+++|+..........+..+.+...... ++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 301 (352)
T PF07690_consen 234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS------------SSPVW 301 (352)
T ss_dssp CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH------------CHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHH
Confidence 5667888 7888999999999999999999999999999877776666655555554432111 12223
Q ss_pred HHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 389 VLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
......+.+. ......+....+..|..|++.+|++.|+.+...++++.++|
T Consensus 302 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 302 LIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3333333333 33333567778888999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=247.42 Aligned_cols=319 Identities=18% Similarity=0.224 Sum_probs=223.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERGH 234 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~ 234 (516)
+++.|++|+++|++++++......+|..++|.+++.+.+. .+||+.|++.+++.++..+.. .++||+++.. +++
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 188 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKETRPAR--APA 188 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCC
Confidence 9999999999999999999999999999999998776533 489999999888777665543 4477764110 000
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH-Hhc
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF-KTI 313 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (516)
++ .. ....++.+++ ++.+.......+.. ........+.|.+. +++
T Consensus 189 -~~---------------~~--------------~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (392)
T PRK10473 189 -AS---------------SK--------------PRENSESLLN---RFFLSRLVITTLSV-TVILTFVNTSPVLLMEQM 234 (392)
T ss_pred -cc---------------ch--------------HHHHHHHHhC---HHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHc
Confidence 00 00 0001112221 12222111111111 11222334445444 457
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHH
Q 010185 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLI 393 (516)
Q Consensus 314 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (516)
|+++.+.+......+++.+++.++.+++.||++||+.+..+..+..++.+++.... ..+......
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 299 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP---------------SHAVSLFGI 299 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 99999999999999999999999999999999999998888777776666655421 122222222
Q ss_pred HHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh
Q 010185 394 CAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL 454 (516)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~ 454 (516)
.+...+++.+... ....+..|.+.|+ |..+....++..+++.+.+++.+..++..
T Consensus 300 ~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 300 TLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3333333333221 1222344544443 33344455667777777777777777544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=254.09 Aligned_cols=379 Identities=14% Similarity=0.144 Sum_probs=254.7
Q ss_pred HHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh--
Q 010185 30 AAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY-- 107 (516)
Q Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-- 107 (516)
.++..+..|.+....+... |.+.++. |.+..+++.+ +.....+ ++.+++|+++||+
T Consensus 17 ~~~l~~~~gl~~~~~~~~l--~~~l~~~------------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~ 74 (491)
T PRK11010 17 LLILGFASGLPLALTSGTL--QAWMTVE------------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTP 74 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhC------------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccc
Confidence 3344455566666555443 5555443 7788889887 3344444 6899999999999
Q ss_pred ---chhHH-HHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 108 ---GRKMS-MTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 108 ---Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
|||+. +..+.+..+++..++++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+
T Consensus 75 ~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l 154 (491)
T PRK11010 75 PFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL 154 (491)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 99885 667888888888777775 47889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 010185 181 GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYD 260 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (516)
|.++++.++..+... ..|||..|++.+++.++..+..+++||+++.. ++ ++. .
T Consensus 155 G~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~~---------------~------ 207 (491)
T PRK11010 155 AMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PKT---------------L------ 207 (491)
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-ccc---------------h------
Confidence 999999987777641 24999999998888777666655678765210 00 000 0
Q ss_pred HHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHH-HHHHHHHHHhHhHh
Q 010185 261 ASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAV-ITGVVNVVATLVSV 339 (516)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g 339 (516)
+++...++++.++++. .+.....................|++.++.|++..+.+.... ...++.+++.++.|
T Consensus 208 ----~~~~~~~l~~~~~~~~---~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G 280 (491)
T PRK11010 208 ----EQAVVAPLRDFFGRNN---AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGG 280 (491)
T ss_pred ----hhhHHHHHHHHHcCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112344444322 222222222222222222233444545668999999999874 55679999999999
Q ss_pred hhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchh
Q 010185 340 FSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE 419 (516)
Q Consensus 340 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 419 (516)
+++||+++|+.+.++..+.++..+++...... .++.+.......+.....+.+. +....+..+..+++
T Consensus 281 ~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-----------~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~ 348 (491)
T PRK11010 281 ILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-----------DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKS 348 (491)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC
Confidence 99999999887776655555544333221110 1111121212222111222222 23345666788888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCC
Q 010185 420 IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 420 ~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (516)
.+++.+|+.+....+|..+++++.|.+.|..||...+.+..++.+.+++.....+++
T Consensus 349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999998877777777777776666555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=245.85 Aligned_cols=341 Identities=12% Similarity=0.073 Sum_probs=233.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+.++.+.+++.+.+.+++.++++++|+++||+|||++++++.+++++++++++++.+. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999999999999999999999999999988887664 7889999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCH
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHV 235 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 235 (516)
+++.|++|+++|++++++......+|.++||.+++.+... .|+..+.+.+...++..+....+||+|++...++.
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~- 185 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW- 185 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC-
Confidence 9999999999999999999999999999999999988754 47777776665555444555568886632110000
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcC
Q 010185 236 DEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIG 314 (516)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 314 (516)
++ .+ ...+. +..++.+++++..+.......+.+ . ......+..|.+.+ .+|
T Consensus 186 ~~-~~-------------~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 186 NP-IA-------------LLRDF----------FHACRVLWRDKLGRFSLAGTTLFW---G-AGATLRFLVLAWAPVALG 237 (393)
T ss_pred CH-HH-------------HHHHH----------HHHHHHHHhCchhHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHcC
Confidence 00 00 00000 011233444333222222221111 1 12233334444444 479
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
.++.+.+......+++.+++.++.+++.||.++|+.+..+. ..++...++... ++.+.......
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~---------------~~~~~~~~~~~ 301 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ---------------HSLLPAYPLLI 301 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH---------------hHHHHHHHHHH
Confidence 99999999999999999999999999999998887776654 333322222221 12222223332
Q ss_pred HHHHhhhcCcccccceeecccCchhh-hhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHh
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEI-RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVF 470 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (516)
+.+.+.+....+ ..+...+..|++. +|++.++.+...+++..++..+.+.+ +..+-...+.+.+++.+.+....
T Consensus 302 ~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 302 LIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 333333333233 3444556656554 79999999999999999999998855 56675555555555555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.59 Aligned_cols=319 Identities=17% Similarity=0.194 Sum_probs=223.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+..
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 100 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVI 100 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~ 233 (516)
.+++.|++|+++|++++++...+..+|..++|.+++.+.+. .+||+.|++.+++.++..+. .+++||+++... ++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 176 (377)
T PRK11102 101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETLPKER-RQ 176 (377)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccCcccc-cC
Confidence 99999999999999999999999999999999998877653 38999999888877766544 345777642100 00
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH-Hh
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF-KT 312 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (516)
+ .+. + +...++++.+++ ++.+..... .+...........+.|.++ +.
T Consensus 177 ~--------------~~~----~----------~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 177 P--------------FHL----R----------TTIRNFASLFRH---KRVLGYMLA-SGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred C--------------CCh----H----------HHHHHHHHHHcC---hHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHH
Confidence 0 000 0 000112233332 222222222 2222333334444555444 45
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
.|+++.+.+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+...... +...+.....
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 293 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-----------DLGFWALVVG 293 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHH
Confidence 79999999999999999999999999999999999998887776554443333222111 0112222222
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHH-HHHHHHHHH
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNM-IFTFVVGQV 442 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~ 442 (516)
...+....+.. .+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 294 VAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 2223344556666 889999998877654 445555544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=246.25 Aligned_cols=319 Identities=13% Similarity=0.111 Sum_probs=230.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|++..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+..
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~ 233 (516)
.+++.|++|+++|++++++......+|..+||.+++.+.. ++||+.|++.++..++..+. .++.||.+. ++
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~ 192 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL----ST 192 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cc
Confidence 9999999999999999999999999999999999988863 38999999988776665443 333554320 00
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (516)
. + ++.+.++++.++++. ..... +..+...........+.|.+.++.
T Consensus 193 ~-~-----------------------------~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~ 238 (400)
T PRK11646 193 V-R-----------------------------TPVREGMTRVLRDKR---FVTYV-LTLTGYYMLAVQVMLMLPIMVNDI 238 (400)
T ss_pred c-c-----------------------------hhhHHHHHHHHcCch---HHHHH-HHHHHHHHHHHHHHHhhhhhHHhh
Confidence 0 0 000112333333222 22111 111111212223345678887876
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhc-ccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 314 GFGAEASLMSAVITGVVNVVATLVSVFSVD-KFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 314 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
+.++.+.+...+..++....+....+++.| |++.++.+..+..+.+++.+++... ++.+.....
T Consensus 239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~ 303 (400)
T PRK11646 239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------------SNLQQLFTL 303 (400)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHH
Confidence 667788888888877777666555566665 4565666666666666655544431 122222222
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
..++..+.+ ...|...++..+..|++.||+++|+.+....+|..++|.+.|.+.|+.+
T Consensus 304 ~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 304 ICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 223333222 2335556777789999999999999999999999999999999998753
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=245.99 Aligned_cols=364 Identities=12% Similarity=0.107 Sum_probs=253.4
Q ss_pred HHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010185 27 CLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRM 106 (516)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr 106 (516)
...+++..+..|++.+..++.. |.+++++ |+++.+.|++.+.+.+++.+++++.|++.||
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~--~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r 64 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV--PQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKK 64 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888887776664 5555555 8999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHh---chhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHH
Q 010185 107 YGRKMSMTVGGISFLIGAIINGA---AVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGIL 183 (516)
Q Consensus 107 ~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 183 (516)
+|||+++.++.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..
T Consensus 65 ~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 144 (410)
T TIGR00885 65 LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI 144 (410)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccc-----------------------CCcchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhcCCHHHH
Q 010185 184 IANLVNYGTAKIS-----------------------GGWGWRVSLALAAVPAILMTVGSFF--LPDTPNSILERGHVDEA 238 (516)
Q Consensus 184 i~~~i~~~~~~~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~ 238 (516)
++|.++..+.... +..+||++|++.+++.++..+...+ .||.++ + ++
T Consensus 145 ~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~~- 216 (410)
T TIGR00885 145 IGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-DA- 216 (410)
T ss_pred HHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-cc-
Confidence 9999987663221 1136999999888877665544432 444220 0 00
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc--CCC
Q 010185 239 KKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI--GFG 316 (516)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s 316 (516)
++.+.+.+.+++++++ +.... .+..+...........+.+.+.++. +.+
T Consensus 217 -------------------------~~~~~~~~~~~~~~~~---~~~~~-~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~ 267 (410)
T TIGR00885 217 -------------------------KQISFSASLSRLARIR---HYREG-VIAQFFYVGVQIMCWTFIIQYAVRLIPGMT 267 (410)
T ss_pred -------------------------ccccchhhHHHHHhCh---hHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 0000011222333322 22222 2222333333334455666666654 344
Q ss_pred chhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHH
Q 010185 317 AEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAY 396 (516)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (516)
...++...........+|+++++++.||+++|+.+.+...+..+..++.... ..........+.
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~----------------~~~~~~~~l~~~ 331 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA----------------GGHVGLYCLTLC 331 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------------CChHHHHHHHHH
Confidence 4444555666667889999999999999999998887777766666655541 122233333344
Q ss_pred HHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc------chhhHHHHHHHHHHHH
Q 010185 397 VAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF------KFGLFFFFAGFVAVMT 466 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~------g~~~~~~~~~~~~~~~ 466 (516)
+.+.+.. .|..++...+..+++.+..+.++.... +|+++.|++.|.+.|.. +....++....|.+..
T Consensus 332 glf~s~~-fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 332 SAFMSLM-FPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHHH-HHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 4443333 477777777888877655555555444 99999999999999954 3444455544444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=240.37 Aligned_cols=342 Identities=14% Similarity=0.146 Sum_probs=226.2
Q ss_pred cccCCchhHHHHHHHHHH-HHHHHHHhhHHHHhhhchhHHH-HHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 74 YCKFDSQLLTLFTSSLYL-AALVASFFASVVTRMYGRKMSM-TVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
++|++.++.|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...
T Consensus 45 ~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 123 (393)
T PRK15011 45 EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTAN 123 (393)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 348899999999877655 66666655666 9999998875 56667777888888899999988776655555555678
Q ss_pred cchhhhhhccCCcCcc--chhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHH
Q 010185 152 QVVPVYLSEMAPAKVR--GALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNS 228 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~ 228 (516)
+...++..++.++++| +...++...+.++|.+++|++++.+.+. .|||..|++.++..++..+.. .++||.++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 200 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE 200 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcCccCCC
Confidence 8888888888876655 3455788889999999999999888654 399999999888777665544 447876511
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
+++ + ++ +.+...+ +++..+........ ....+..+..+.|.
T Consensus 201 ---~~~--~----------------------------~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ 241 (393)
T PRK15011 201 ---LPL--A----------------------------TG---TLEAPRR--NRRDTLLLFVICTL-MWGTNSLYIINMPL 241 (393)
T ss_pred ---Ccc--c----------------------------cc---ccccccc--ccccHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 000 0 00 0000001 11111222222222 22233444556776
Q ss_pred HHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhH
Q 010185 309 LFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDAD 387 (516)
Q Consensus 309 ~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (516)
+.+ ++|+++.+.+.+.....+..+++.++.|+++||++||+.+..+.....+....+... ++.+
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 306 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---------------HSPA 306 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---------------hhHH
Confidence 664 579999888888888778888999999999999999987766554444333222110 1222
Q ss_pred HHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHH
Q 010185 388 FVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTV 467 (516)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 467 (516)
..+....+.....+.. .+....+..|..|+ .++++.++.+...++|..++|.+.|.+.+..++...+....++.+.+.
T Consensus 307 ~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~ 384 (393)
T PRK15011 307 ILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222222222222211 12223445688884 599999999999999999999999999998888777776666666666
Q ss_pred HHhhcccC
Q 010185 468 FVFYMVPE 475 (516)
Q Consensus 468 ~~~~~~~~ 475 (516)
+..+..||
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 66665553
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=243.50 Aligned_cols=335 Identities=10% Similarity=0.059 Sum_probs=236.6
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++|++.|.+.+...+..
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 117 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL 117 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS-FFLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~ 233 (516)
.++..|.+|+++|++++++.....++|.+++|++++.+.. .+||..|++.++..++..+.. +++||+++. +
T Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~- 189 (395)
T PRK10054 118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---I- 189 (395)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhccccc---c-
Confidence 9999999999999999999999999999999999988763 289999998887776655443 335554310 0
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHH---
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLF--- 310 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 310 (516)
+ ++ .++ ..+.++.++++. .+.......+.... ......+.+.+.
T Consensus 190 ~-~~------------------------~~~----~~~~~~~~~~~~---~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 236 (395)
T PRK10054 190 A-TE------------------------TGS----VWSPSVLLQDKA---LLWFTCSGFLASFV-SGAFASCISQYVMVV 236 (395)
T ss_pred c-cc------------------------hhh----hhhhhhhccCce---ehHHHHHHHHHHHH-HHHhhhhHHHHHHHh
Confidence 0 00 000 000123333222 22222222221111 222222333333
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 311 KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 311 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
++.+.+....+.......+.........+++.||.++|+.+..+..+..++...+... .++.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 302 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--------------GNSLLLWG 302 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--------------chHHHHHH
Confidence 2345666667777777777777778888999999999998887776666666555431 01222223
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHH
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
....++..+. ....|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+.....+...+
T Consensus 303 ~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 376 (395)
T PRK10054 303 MSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAA 376 (395)
T ss_pred HHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence 3333333332 2224555667778889999999988754 677999999999999999998765555544443333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=247.05 Aligned_cols=377 Identities=15% Similarity=0.151 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+..+.++..++...+....|...++..... . .++|.|....+.+.+.++++++++++.+++
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~-----g--------------~~edl~~~~~~l~~~~t~F~v~Yii~~~p~ 101 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLS-----G--------------LKEDLKLVGNQLGVLDTVFYVGYIIGQFPS 101 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHc-----C--------------CccccchhhhhhhhHHHHHHHHHHHHHhhH
Confidence 345666667777778888888766544321 1 256778999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
|.|.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|+...+++.|+.+++|++.++++.+..++
T Consensus 102 ~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~ 181 (495)
T KOG2533|consen 102 GLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASL 181 (495)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccc---CCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHH
Q 010185 181 GILIANLVNYGTAKIS---GGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQ 256 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~---~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (516)
|.++|++++..+.+.. ...||||.|++.++++++..++.++ +|+.|....-..+ +|..-..++
T Consensus 182 g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~-~ek~~~~~~------------ 248 (495)
T KOG2533|consen 182 GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD-EEKELVVER------------ 248 (495)
T ss_pred hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch-HHHHHHHHH------------
Confidence 9999999988854321 2349999999999999887766555 9999942100000 000000000
Q ss_pred HHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHh
Q 010185 257 DLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVAT 335 (516)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~ 335 (516)
.++.......++..+.++.+..+.++++... +..++.....+.+.+|.|.++++ .|++..++..+..+..++++++.
T Consensus 249 -~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~-l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 249 -LRESPSGGIENKFKWKGFKEALKDPGVWPFS-LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred -HHhccCCCcccccCHHHHHHHHhchhHHHHH-HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 0000001111113333444333344444444 44455555667789999999988 57999999999999999999999
Q ss_pred HhHhhhhccc----CCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccccee
Q 010185 336 LVSVFSVDKF----GRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLV 411 (516)
Q Consensus 336 ~~~g~l~d~~----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (516)
+++|+++||+ .+|........+..+...+.... ..........++.+........+.....
T Consensus 327 i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~w 391 (495)
T KOG2533|consen 327 ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA---------------AAVLPGAYGAFLIGPYGLIATAIIALSW 391 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh---------------hccchHHhHHHHhcchhhHHHHHHHHhh
Confidence 9999999995 44444443333333332222111 1111112222222222222223445555
Q ss_pred ecccCchh-hhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 010185 412 PSEVCALE-IRSAGQAINVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 412 ~~~~~p~~-~~~~~~g~~~~~~~~g~~i~~~~~~~~ 446 (516)
.++....+ .+-+..+........++.+.|.+....
T Consensus 392 ~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~ 427 (495)
T KOG2533|consen 392 TSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSL 427 (495)
T ss_pred ccccccchHHhHHHHhhhhcchhHHHHhhhhhcccc
Confidence 55555444 344445555556666676766665443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=235.88 Aligned_cols=321 Identities=14% Similarity=0.149 Sum_probs=224.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|+++.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERGH 234 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~ 234 (516)
.+..|++++++|+++.++...+..+|..++|.+++.+.+. .+||+.|++.++..++..+. .++.||+++.. ++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 192 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPETRPAD---AR 192 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cc
Confidence 8999999999999999999999999999999998877643 48999999988776655443 44578765210 00
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-c
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-I 313 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 313 (516)
+ ++.+..+++.++++..+..... .+...........+.+.+.++ +
T Consensus 193 --~----------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK11652 193 --R----------------------------TRVLASYRTLLSNRRFNCYLLM----LIGTLAGIAVFEACSGVLMGAVL 238 (394)
T ss_pred --h----------------------------hHHHHHHHHHHcChHHHHHHHH----HHHHHHHHHHHHHhChHHHHHHc
Confidence 0 0001112233332222211111 112222233334445555555 7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHH
Q 010185 314 GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLI 393 (516)
Q Consensus 314 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (516)
|+++.+.++.......+.+++..+.+++.||.+++... ......++.+++...... .....+......
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 306 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF----------GVMNVWTLLVPA 306 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh----------ccccHHHHHHHH
Confidence 99999989888888888889999999999998833222 222222222222111100 001222233333
Q ss_pred HHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 394 CAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
.+...+.+. ..+....+..|..| +.++++.++.+....+|+.+++.+.+.+.+..
T Consensus 307 ~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 307 ALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 333333332 34555566667777 67899999999999999999999988876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=230.28 Aligned_cols=318 Identities=17% Similarity=0.153 Sum_probs=227.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+...+...
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 8999999999999999999999999999999999999999999998888887 789999999999999999998888888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCH
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHV 235 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 235 (516)
.++.|++| ++|++++++...+..+|..+++.+++.+..... .+||+.|.+.++..++... .++|+.++. .+
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~~----~~- 180 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRRR----VA- 180 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhccc----cC-
Confidence 89999986 579999999999999999999988776654321 1499998877665443322 223433200 00
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCC
Q 010185 236 DEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGF 315 (516)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (516)
++++..+...++.+++ +..+ ...+..+.....+.....+.|.++++.|+
T Consensus 181 ---------------------------~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~lp~~~~~~g~ 229 (355)
T TIGR00896 181 ---------------------------ANQTTTRLTPVRIWRS---PLAW-QVTVFFGLQSGLYYSLIGWLPAILISHGA 229 (355)
T ss_pred ---------------------------CCCCCCCCCCchhhcC---HhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0000001122333332 2222 22222333333445566788888888899
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 316 GAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
+..+.+...+...++.++++++.+++.||+ +||+.+..+..+.+++.+.+... ....... ...
T Consensus 230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~ 293 (355)
T TIGR00896 230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA---------------PMHGLWA-WAL 293 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh---------------hhhHHHH-HHH
Confidence 999999999999999999999999999999 45666666666666665544432 1111111 222
Q ss_pred HHHHhhhcCcccccceeec-ccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 395 AYVAAFAWSWGPLGWLVPS-EVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
+++.+.+ ...+....... +..+++.++...++.+....++..++|.+.|.+.|+.+
T Consensus 294 l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 294 VLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2232222 22333333333 34456778999999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=237.15 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=216.2
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhccccccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 152 (516)
++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+ ..+
T Consensus 31 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 109 (366)
T TIGR00886 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFA 109 (366)
T ss_pred HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhH
Confidence 3499999999999999999999999999999999999999999999999999999999 99999999999999966 456
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccc-------cCCcchhHHH-HHhHHHHHHHH-HhhccCC
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKI-------SGGWGWRVSL-ALAAVPAILMT-VGSFFLP 223 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~-------~~~~~wr~~f-~~~~~~~~~~~-~~~~~~~ 223 (516)
....++.|++|+++|++++++......+|..+++.++..+... .+..+||+.| +..+++..+.. +...+.+
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999977777777777766544321 1234899999 44454444433 3334466
Q ss_pred CChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHH
Q 010185 224 DTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIM 303 (516)
Q Consensus 224 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (516)
|+|+... +.++. + ...... . . +++......+.++++ +.+... +..+..........
T Consensus 190 ~~~~~~~---~~~~~-~----~~~~~~-~-----~------~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~ 245 (366)
T TIGR00886 190 DTPPGKP---ATGKL-S----FKGARW-S-----V------GTGALGDQLKVFRDR---HTWILA-LLYSVTFGSFLGVS 245 (366)
T ss_pred cCCcccc---cchhc-c----cccccc-c-----c------cchhHHHHHHHHhcc---chhhHH-HHHHHHHHHHHHHH
Confidence 6652110 00000 0 000000 0 0 000000122333322 222222 22233333344556
Q ss_pred HhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 304 FYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 304 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
.+.|.++++ +|+++.+++.......+..++++++.+++.||+++|+.+..+......+..++.... .+
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 314 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-----------VS 314 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC-----------CC
Confidence 667766654 699999999999999999999999999999999998887777665555555444321 00
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHH
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIF 435 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (516)
+.+.+.............+.. .+..+....+..| +++|+++|+.+..+++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 PLSLAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred cchHHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 002222222222333333333 3445566678877 78999999998887765
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=230.99 Aligned_cols=330 Identities=12% Similarity=0.073 Sum_probs=235.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHH----HHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSM----TVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|+|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+++++.+++.|+++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 88999999999999999999999999999999985433 233222222 244568899999999999999988888
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHh
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILE 231 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 231 (516)
|...++..++ +++|++..+....+.++|.+++|++++.+.+. +|||..|++..+..++..+.. .++|+++.
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~~~-~~~~~~~~--- 183 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLIGF-LIKPTIPP--- 183 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHH-HcCCCCCC---
Confidence 9988887665 46789999999999999999999998887754 499999988765533333323 33333200
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (516)
+++ ++ +++++...+.++++|+ ++.+...... +...........+.|.+++
T Consensus 184 ~~~-~~-------------------------~~~~~~~~~~~~~l~~---~~~~~~l~~~-~l~~~~~~~~~~~~~~~l~ 233 (382)
T TIGR00902 184 KDA-IP-------------------------EDESQGDSAFIALLKN---PMNLRFLAAV-CLIQGAHAAYYGFSAIYWQ 233 (382)
T ss_pred Ccc-cc-------------------------ccccccchhHHHHHcC---hHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000 00 0000011123344443 3333333332 3333345556667777778
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
+.|.++.+.+.......+..+++..+.+++.||+++|+.+.++.+...+...++... ++.+....
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 298 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---------------EAFPLIFL 298 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH---------------hhHHHHHH
Confidence 899999999999999999999999999999999999999998888888887776552 23343444
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHH-HHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVS-TNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
...+.+..++.. .+....++.+. |++.+++++++++. ...+|..++|.+.|.+.|+.+...++..+++..
T Consensus 299 ~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 299 LQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555555443 34455666677 98999999999864 567999999999999999998765555555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=228.89 Aligned_cols=370 Identities=12% Similarity=0.101 Sum_probs=244.4
Q ss_pred HHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-----c
Q 010185 34 GLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY-----G 108 (516)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----G 108 (516)
++..|+..+...... |.+.++- |++.+++|++..+... .+..+++|+++||+ |
T Consensus 8 ~~~~~~~~~~~~~~~--~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 8 GFASGLPLALTSGTL--QAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHhhhHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 455566666654333 6666654 8999999999777776 69999999999999 8
Q ss_pred hhH-HHHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHH
Q 010185 109 RKM-SMTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILI 184 (516)
Q Consensus 109 rr~-~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 184 (516)
||| ++.++.++.+++..+.++. ++++.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++
T Consensus 66 ~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 66 RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 865 7888899998888888877 457888888888899899899999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 010185 185 ANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEA 264 (516)
Q Consensus 185 ~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (516)
++.++..+... ..|||..|++.++..++..+..+++||++++. ++.++.
T Consensus 146 g~~l~~~l~~~--~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~-------------------------- 194 (402)
T PRK11902 146 SGGLALWLADR--VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL-------------------------- 194 (402)
T ss_pred HhHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh--------------------------
Confidence 99987766542 13899999998887776655555577765210 000000
Q ss_pred hhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHH-HHHHHHhHhHhhhhc
Q 010185 265 AKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITG-VVNVVATLVSVFSVD 343 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d 343 (516)
.++.+.+++++++++..+.......+... ..........+++.++.|+++.+.++.....+ ++.+++.++.+++.|
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~ 271 (402)
T PRK11902 195 GEAVVGPLRDFFSRRGAWALLLLIVLYKL---GDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV 271 (402)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHh---HHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 00011234455554433332222222111 11111223345566668999999988876655 468999999999999
Q ss_pred ccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHH---HHHhhhcCcccccceeecccCchhh
Q 010185 344 KFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICA---YVAAFAWSWGPLGWLVPSEVCALEI 420 (516)
Q Consensus 344 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~ 420 (516)
|+++|+.+..+..+..+..+.+...... .++.+.......+ ..+.......+....++.+.+|.+.
T Consensus 272 r~g~~~~l~~~~~~~~l~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T PRK11902 272 RLGLYRSLMLFGVLQAVSNLGYWVLAVT-----------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ 340 (402)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 9999988776666555544433322110 1122222222211 1111122223445566667777554
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhccc
Q 010185 421 RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 421 ~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
.+..+....++..+++++.|.+.|..|+...+..++++.+.+.+.....+
T Consensus 341 ----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 341 ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566677777778899999999988777777766666655544333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=226.78 Aligned_cols=349 Identities=13% Similarity=0.046 Sum_probs=211.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHH---hch-----hhhHHHHHHHhhhhc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIING---AAV-----NIAMLIIGRLMLGVG 146 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 146 (516)
+|++..+.|++.+++.++..++++++|+++||+|||+++.++..+.+++..... .++ .....++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999999887766655443221 111 111123334444443
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC-CCC
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL-PDT 225 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~ 225 (516)
.....+....+..+ . ++++++.++......++|..++|++++.+... +|+++|++.+++.++..+..+++ +|.
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI----NPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc----CchHhHHHHHHHHHHHHHHHhcccccc
Confidence 33333333333222 2 24567888899999999999999998887643 89999999888877766665553 443
Q ss_pred hHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHh
Q 010185 226 PNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFY 305 (516)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (516)
++....+++ ++ .++++.......+.++++..+......... ...+.....+
T Consensus 195 ~~~~~~~~~-~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~----~~~~~~~~~~ 245 (420)
T PRK09528 195 PSTAKVANA-LG------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGV----ACFYDVFDQQ 245 (420)
T ss_pred cchhhhccc-hh------------------------cccccccHHHHHHHccCCCeEeehHHHHHH----HHHHHHHHHH
Confidence 311000000 00 000000001122233333222222211111 1112222223
Q ss_pred HHHHHH----hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 306 APVLFK----TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 306 ~~~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
.|.++. +.+.+..+.+...+...+...++.++.+++.||+++|+.+..+..+..+..+++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------- 312 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------- 312 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------
Confidence 343333 235666777888888899999999999999999999999888777777766665541
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH-HHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHH
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI-NVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAG 460 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~ 460 (516)
++.+.......+...... ...+....+..|.+|++.+++..+. .++...+|.+++|.+.|++.|..|+...+...+
T Consensus 313 --~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~ 389 (420)
T PRK09528 313 --TGPLEVSILKLLHAFEVP-FLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILG 389 (420)
T ss_pred --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 122222222222222221 1123334566788899999988765 577788999999999999999988766665544
Q ss_pred HHHH-HHHHHhhccc
Q 010185 461 FVAV-MTVFVFYMVP 474 (516)
Q Consensus 461 ~~~~-~~~~~~~~~~ 474 (516)
++.+ ..++..+..+
T Consensus 390 ~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 390 GIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHhc
Confidence 4443 3434333333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=229.13 Aligned_cols=349 Identities=12% Similarity=0.102 Sum_probs=227.0
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhch-hHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGR-KMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
++|++..+.|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...+
T Consensus 32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 348999999999999999999999999999999965 8899999999989999999999999999999999998777766
Q ss_pred chhhhhh--------ccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC
Q 010185 153 VVPVYLS--------EMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD 224 (516)
Q Consensus 153 ~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 224 (516)
...++.. |......|.|.+| .+|.+++|.+++.+... ..|+ +|++.++..++..+..+++||
T Consensus 112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~-~f~~~~~~~~~~~~~~~~~~e 181 (418)
T TIGR00889 112 LTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNI-QLYITAGSSALLGVFALTLPD 181 (418)
T ss_pred HHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhH-HHHHHHHHHHHHHHHHhcCCC
Confidence 6555432 2222234555555 36778888887766321 2455 455666555555555556888
Q ss_pred ChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHH
Q 010185 225 TPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMF 304 (516)
Q Consensus 225 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (516)
+|+.. ++ ++ . . .++..+.+.++++|++........ .++ ..........
T Consensus 182 ~~~~~---~~-~~-------------~--~---------~~~~~~~~~~~~~k~~~~~~~~~~---~~~-~~~~~~~~~~ 229 (418)
T TIGR00889 182 IPVAK---ST-AK-------------M--S---------IKVMLGLDAFILFKNKRMAIFFFF---SML-LGAPLQITNI 229 (418)
T ss_pred CCCCc---cc-cc-------------c--C---------HHHHhhhhHHHHhcCCCeeeHHHH---HHH-HHhHHHHHHH
Confidence 76210 00 00 0 0 000001112334443322222222 122 1222223445
Q ss_pred hHHHHHHhcCCCc--------hhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 305 YAPVLFKTIGFGA--------EASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 305 ~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
+.+.+.++.|.++ +..+...+...+..+++.+..+++.||+|+|+.+..+.++..++..++....
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~------- 302 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD------- 302 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 5566666666543 5668888999999999999999999999999999988887777665554310
Q ss_pred CCCCcccchh-HHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHhhcc---
Q 010185 377 GEGTLTKFDA-DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINV-STNMIFTFVVGQVFLSMLCHFK--- 451 (516)
Q Consensus 377 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~~~~~~g--- 451 (516)
..... +......++.+.+.+ ...+....++.|.+|++.|++++|+.+ ....+|.+++|.+.|.+.++.+
T Consensus 303 -----~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~ 376 (418)
T TIGR00889 303 -----PEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG 376 (418)
T ss_pred -----cchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 00111 112222223333322 224455567789999999999999997 5678999999999999999853
Q ss_pred ---hhhH-HHHHHHHHHHHHHHhhcccCCC
Q 010185 452 ---FGLF-FFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 452 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
|... ...+++..+.+++.+++.+|++
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4443 4444555555555566666543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=222.79 Aligned_cols=326 Identities=11% Similarity=0.052 Sum_probs=223.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchh----HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRK----MSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|.|..+.|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 88999999999999999999999999999999984 3333332222 22334456899999999999999999999
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHh
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILE 231 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 231 (516)
+...++..++ +++|+++.+......++|.++||++++.+.+.. |||..|++.++..++..+...+.||.++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---GEQAILWILTAGVASMLLGQLLRPTIMPQ--- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---ChhHHHHHHHHHHHHHHHHHHccCCCCCc---
Confidence 9888887776 356888999999999999999999999887543 99999988776555444433445543210
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (516)
++.+ ++.++...+++++++++. .+......++. .........+.|.+.+
T Consensus 185 -~~~~--------------------------~~~~~~~~~~~~i~~~~~---~~~~~~~~~l~-~~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 -GESR--------------------------QQESAGWPAWKALLKEPT---VWRFLLCVSLL-QGSHAAYYGFSAIYWQ 233 (382)
T ss_pred -cccc--------------------------cccccccchHHHHHcChh---HHHHHHHHHHH-HHHhHhHHHHHHHHHH
Confidence 0000 000011223455555332 22222222222 2223344555666667
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
+.|.+..+.+.......+..++..++.+++.||+++|+.+..+....++..+++... ++.+....
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 298 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---------------TALPWLIV 298 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---------------hhHHHHHH
Confidence 889999999999998889999999999999999999999888887777766555431 23333333
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHhhcchhhHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINV-STNMIFTFVVGQVFLSMLCHFKFGLFFFFA 459 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 459 (516)
..++.+.+++.. .+....+..+. +++.+++..+..+ ....+|..++|.+.|.+.|..+...++..+
T Consensus 299 ~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~ 365 (382)
T PRK11128 299 IQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMA 365 (382)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344444433332 33444555555 5566788888876 445677789999999999998865444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=237.94 Aligned_cols=373 Identities=16% Similarity=0.185 Sum_probs=270.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHH-Hhhhhcccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGR-LMLGVGVGFANQV 153 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~~~~~~~ 153 (516)
++.+..+.+|+.++....+.+..|+.+.+.||+|.|++.++|.++..++.++.++++++|++++.. ++.|+|.|..+..
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 377888999999999999999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC-ChHHHHhc
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD-TPNSILER 232 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~ 232 (516)
...++..||+ ++|+.+.|+...+.++|.++-|.+.-.+ .+..|||+.+++.+.+.+-..+....+++ +++.. ++
T Consensus 156 aiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l---~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~-~~ 230 (509)
T KOG2504|consen 156 AVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYL---LSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK-PN 230 (509)
T ss_pred hhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-ch
Confidence 9999999986 4599999999999999999998884444 45559999999988887666555444333 22110 00
Q ss_pred CCHHHHHHHHHH-----------HhCC-C--CcH---HHHHHHHHHHHHhh--hccCch----hhhhccCCcchHHHHHH
Q 010185 233 GHVDEAKKMLQK-----------IRGT-P--NVD---EEFQDLYDASEAAK--QVHHPW----TNILRGRYRPQLTMCTL 289 (516)
Q Consensus 233 ~~~~~~~~~~~~-----------~~~~-~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 289 (516)
.++..+...+ .... + ..+ ......++..++.+ ..+... .++++ .+.++.+.
T Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~----~~~fl~~~ 304 (509)
T KOG2504|consen 231 --EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK----DPKFLLLA 304 (509)
T ss_pred --hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc----CchHHHHH
Confidence 0000000000 0000 0 000 00000000000000 000111 23333 24566666
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCC--chHHHhhhHHHHHHHHHHHH
Q 010185 290 IPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGR--RVLFLEGGVQMFICQCLVGI 367 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--r~~~~~~~~~~~~~~~~~~~ 367 (516)
+.......++.....++|.+.++.|++..+++...++.++..++++++.|++.|+... +....++.+..+++.+.++.
T Consensus 305 ~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 305 LSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888899999999999999999999999999999999999999999874 34444555555555544443
Q ss_pred HHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 368 MLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
. .....+...+++.+.....+..+....+.|+.+.+.-..++|+...+..++..++|++.|.+.
T Consensus 385 ~----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 385 A----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred h----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 2 233444444444444444445555567779999999999999999999999999999999999
Q ss_pred hhcc-hhhHHHHHHHHHHHHHHHhhccc
Q 010185 448 CHFK-FGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 448 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
|..+ |...+.+++++.+.+..+++..+
T Consensus 449 d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9888 88888888888888887777666
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=219.89 Aligned_cols=392 Identities=13% Similarity=0.047 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccchhhhhhhhch-------hhhh-------------------------hcccCCC
Q 010185 23 VLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFP-------KVYR-------------------------KQLNKGH 70 (516)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------------------~~~~~~~ 70 (516)
+-.+...++++.+.+++..+++.++. |.+..+.-. .... +-..++.
T Consensus 19 r~lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~ 96 (464)
T KOG3764|consen 19 RPLILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPA 96 (464)
T ss_pred cceEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCch
Confidence 33445566677788888888877666 666666531 0000 0000122
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccc
Q 010185 71 ESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 150 (516)
.+++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++.+.++++++++.++++++++.|.+||+|.+..
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHH
Confidence 34667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCcC-ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHH
Q 010185 151 NQVVPVYLSEMAPAK-VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNS 228 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~ 228 (516)
.++..++++|.+|++ +|++++|+...+.++|.++||++|+++.+.. |.+.+|++.+++.++-..+.++ ++++..
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~- 252 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTEM- 252 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCcccc-
Confidence 999999999999977 4799999999999999999999999998776 8999999999999988777666 443320
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
++++..+..++.++++.+ .+........+.+......-.++...
T Consensus 253 ---------------------------------~~~~~~~~~~~~~Ll~dP---~I~~~agai~~~n~~lafLePtlslw 296 (464)
T KOG3764|consen 253 ---------------------------------DPDSTEQGTPMWSLLMDP---YILLIAGAITFSNSSLAFLEPTLSLW 296 (464)
T ss_pred ---------------------------------CccccccCccHHHHHhCc---hHhhhhcchhhccchHHHhCcccHHH
Confidence 001222344556665533 33333333233322221112222233
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHH--HhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 010185 309 LFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLF--LEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDA 386 (516)
Q Consensus 309 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (516)
..++...+.-+.|+......+...++..+.|.+.||++.-+.+ ..+.+..+++.....+... ....
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~------------~~~L 364 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS------------IAQL 364 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh------------HHHH
Confidence 4455665555889999999999999999999999999943333 3333333333333333211 1122
Q ss_pred HHHHHHHHHHHHhhhcCcccccceeecccCchh---hhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhH-HHHHHHH
Q 010185 387 DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE---IRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLF-FFFAGFV 462 (516)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~-~~~~~~~ 462 (516)
+......+..+........|.....+ |.-..+ ..|..+++......++.+++|.+.|.+.+..|+.+. .+++...
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n 443 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILN 443 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHH
Confidence 33333333333333334445443343 333333 678999999999999999999999999999996443 4444444
Q ss_pred HHHHHHH
Q 010185 463 AVMTVFV 469 (516)
Q Consensus 463 ~~~~~~~ 469 (516)
.+.+-++
T Consensus 444 ~iyapvl 450 (464)
T KOG3764|consen 444 LIYAPVL 450 (464)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=213.35 Aligned_cols=342 Identities=16% Similarity=0.112 Sum_probs=222.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+.+....|.+.|.|.+...+.++.+|.++||+|||+++++|++..+++.++.++++|+..+.+.|++.|+.-| ...+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999777777999999988 667888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcccc---CCcchhHHHHHhHHHHHH-HHHhhccCCCChHHHHh
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS---GGWGWRVSLALAAVPAIL-MTVGSFFLPDTPNSILE 231 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~---~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~ 231 (516)
++++|.+++++|++.++.+...+++|.++||.+|+++.... ..+..-.+-++..+.... .....+++||+-+.
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~--- 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL--- 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---
Confidence 99999999999999999999999999999999999998732 111122222223333333 33445668998321
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcch---HHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQ---LTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
+++.++... .++..++..+..+.+ ........+++.... .+..+.+..+.+...+....++.+.
T Consensus 220 rk~~~~~~~----------~~~~~~~~~~~~~~~---~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 220 RKRNDEHST----------LQEAADDRLALLKFA---RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhhcccccc----------hhhhhhhhhhhcchh---hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111111100 000000000000000 000001111211111 2222233333333333344444444
Q ss_pred HH-HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccC--CchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccch
Q 010185 309 LF-KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFG--RRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFD 385 (516)
Q Consensus 309 ~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (516)
+. +.+|+++.+.|-+.+..++.+.+......+..+|.+ .+-.+..+..++.-..+++.. ..
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~----------------~~ 350 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL----------------AR 350 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc----------------cc
Confidence 42 457999999999999999988888888777777765 333333333333333333222 12
Q ss_pred hHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 386 ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
....+.+...+..+.+....+....++....|.++||++.|+....+.++-++||.+.|.+..+.
T Consensus 351 ~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 351 TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 22333333333333333444555566778899999999999999999999999999998876543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=206.22 Aligned_cols=368 Identities=11% Similarity=0.112 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHH
Q 010185 24 LVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVV 103 (516)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l 103 (516)
....+.++...+++|+......... |.+.+.| +++..+.+++..+++.++.+.+++.|++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLi--p~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~ 71 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILI--PHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLL 71 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhH--HHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3345556666788888888777664 6666665 8999999999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHH---hchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHH
Q 010185 104 TRMYGRKMSMTVGGISFLIGAIING---AAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITI 180 (516)
Q Consensus 104 ~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 180 (516)
.+|+|+|+.+++|+.++++++.++. ...++..+++.-++.|.|.+...+....+++...++++..+.+++.+..+++
T Consensus 72 ~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~l 151 (422)
T COG0738 72 IKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGL 151 (422)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhh
Confidence 9999999999999999999999994 5688999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHhhhcccc----------------CCcchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhcCCHHHHHHHH
Q 010185 181 GILIANLVNYGTAKIS----------------GGWGWRVSLALAAVPAILMTVGSFF--LPDTPNSILERGHVDEAKKML 242 (516)
Q Consensus 181 G~~i~~~i~~~~~~~~----------------~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~ 242 (516)
|.+++|+++..+.... ....||++|...+...+++.+.... .|+.+.-
T Consensus 152 Ga~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-------------- 217 (422)
T COG0738 152 GAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-------------- 217 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc--------------
Confidence 9999999987765410 0125888998887777666655444 4554310
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHH
Q 010185 243 QKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASL 321 (516)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 321 (516)
..+..+..+....++++++. +....+..+++...-.....|.+.++.+ .|.+.+++.
T Consensus 218 ------------------~~~~~~~~~~~~~~l~~~~~----~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa 275 (422)
T COG0738 218 ------------------APSLGASGSAGLSSLFQNKH----LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA 275 (422)
T ss_pred ------------------cccccccccchHHHHHhChH----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 00001111113445554433 3333444455555556677778877777 799999999
Q ss_pred HHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhh
Q 010185 322 MSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFA 401 (516)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (516)
...+....+.++|++++.++..|+...+.+....+...+.++...+. +....+ ......+.+.
T Consensus 276 ~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~----------------~g~v~~-~~l~~ig~F~ 338 (422)
T COG0738 276 YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI----------------GGVVAL-YALFLIGLFN 338 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh----------------cChHHH-HHHHHHHHHh
Confidence 99999999999999999999999999888877665555544444442 222233 3333444444
Q ss_pred cCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhH-HHHHHHHHHHH
Q 010185 402 WSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLF-FFFAGFVAVMT 466 (516)
Q Consensus 402 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 466 (516)
....|..++...+..| ++...+.+ .-.+..+|+++.|++.|++.|..+.... ......|.+..
T Consensus 339 simfPTIfslal~~l~-~~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 339 SIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHHhccC-ccccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5556777777778888 44444433 3566678999999999999999885433 33444444444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=223.59 Aligned_cols=379 Identities=13% Similarity=0.104 Sum_probs=264.1
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVA 96 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (516)
.+.-++.|..-++..+|..+......++ +.+. .-|+...+++.++..+...+.
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wl---------v~~l------------------t~S~~~valv~~a~~LP~~Ll 61 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALAWL---------VTQL------------------TGSPLMVALVQAASTLPILLL 61 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH------------------hCCHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666555544332 2222 238899999999999999999
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-----hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhH
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-----VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALN 171 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 171 (516)
++++|.++||++||++++.+.++.++..+..++. .+.|.+++.-++.|++.+...|+..+++.|..|+++...+.
T Consensus 62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~ 141 (524)
T PF05977_consen 62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN 141 (524)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 9999999999999999999998887665555443 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCc
Q 010185 172 IGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNV 251 (516)
Q Consensus 172 ~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (516)
++.+...++..++||.+||.+.... |-.+.|++.++..++........+..++ .++..+|
T Consensus 142 al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e-------------- 201 (524)
T PF05977_consen 142 ALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLISILALLRWKPPPP---PSSLPRE-------------- 201 (524)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchh--------------
Confidence 9999999999999999999877554 6678888877665554443333332210 0000000
Q ss_pred HHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHH
Q 010185 252 DEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVV 330 (516)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 330 (516)
+..++-+..++-+.+++..+..+....+ . ......+...+|.+.++ +|.++...|++.+..+++
T Consensus 202 -----------~~~~~l~~G~ryv~~~~~l~~~l~~~~~---~-~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvG 266 (524)
T PF05977_consen 202 -----------RFFSALREGLRYVRSSPPLRSVLLRSFL---F-NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVG 266 (524)
T ss_pred -----------hhhhhHHHHHHHHhcchHHHHHHHHHHH---H-HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 0001111222222222222222221111 1 11222344457777664 788999999999999999
Q ss_pred HHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccce
Q 010185 331 NVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWL 410 (516)
Q Consensus 331 ~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (516)
.++|.++.+++.+|+++++.+..+.++.+++.+.+++. ++.+......++.+.+.. .......+
T Consensus 267 ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------------~~~~~~~~~l~l~G~~~~-~~~~~~~t 330 (524)
T PF05977_consen 267 AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---------------PSFWLALIALFLAGAAWI-IANSSLNT 330 (524)
T ss_pred HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999888888887777777666552 233333333333333322 23344456
Q ss_pred eecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 411 VPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 411 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
...+..|++.||++++++++....+..+|..+.|.+.+..|....+.+++++.+++.++....
T Consensus 331 ~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 331 LVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 667899999999999999999999999999999999999986655666665555555444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=228.08 Aligned_cols=330 Identities=14% Similarity=0.162 Sum_probs=222.8
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh----hch-hHHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHh
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRM----YGR-KMSMTVGGISFLIGAIINGAAVN------IAMLIIGRLM 142 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 142 (516)
++|+++.+.|++.++..+..++..|+.|+++|| +|| |+.++.+....+++.+++.+.++ ...+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 348999999999999999999999999999998 687 45677888889988888877664 4567788899
Q ss_pred hhhcccccccchhhhhhccC-CcCccchhHHHHHHHHHHHHHHHHHHHhhhccc----cCCcchhHHHHHhHHHHHHHHH
Q 010185 143 LGVGVGFANQVVPVYLSEMA-PAKVRGALNIGFQMAITIGILIANLVNYGTAKI----SGGWGWRVSLALAAVPAILMTV 217 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~ 217 (516)
.+++.+...+...++..|.. ++++|++..++...+..+|.++++.+.+.+... .+..+||+.+++.++++++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 99998888888888999987 467899999999998888887776654433321 1245899999999888877665
Q ss_pred hh-ccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHh
Q 010185 218 GS-FFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQF 296 (516)
Q Consensus 218 ~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (516)
.. +..||.++. .+.++ +++.+.+..+++++++ +++.... +..+...
T Consensus 189 ~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~---~~~~~~~-~~~~~~~ 235 (437)
T TIGR00792 189 ICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKN---DQLLILC-LAYLFYN 235 (437)
T ss_pred HHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCC---HHHHHHH-HHHHHHH
Confidence 54 447775410 00000 0000001122233332 2222222 2222223
Q ss_pred hhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCC
Q 010185 297 TGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGL 375 (516)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (516)
........+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------- 307 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA------- 307 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3333334445555543 24 45566677777889999999999999999999999888877777666555431
Q ss_pred CCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 010185 376 RGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA-------LEIRSAGQAINVSTNMIFTFVVGQVFLSMLC 448 (516)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~ 448 (516)
+++.+.......+...+.+ ...+..+++.+|..+ ++.+|.+.|+.+....++..+++.+.|.+.+
T Consensus 308 -------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 308 -------GSNLPLILVLIILAGFGQN-FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred -------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222222222222222 224455566666654 4567999999999999999999999999988
Q ss_pred hcch
Q 010185 449 HFKF 452 (516)
Q Consensus 449 ~~g~ 452 (516)
..|+
T Consensus 380 ~~G~ 383 (437)
T TIGR00792 380 IIGY 383 (437)
T ss_pred HcCC
Confidence 7664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=251.56 Aligned_cols=336 Identities=14% Similarity=0.072 Sum_probs=225.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHH---HHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhh
Q 010185 80 QLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTV---GGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPV 156 (516)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 156 (516)
...++..+++.+.+.++++++|+++||+|||+++.. +.+...+..+.+...+|+++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 557889999999999999999999999999997643 33333333344444589999999999999999999999999
Q ss_pred hhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHH
Q 010185 157 YLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVD 236 (516)
Q Consensus 157 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 236 (516)
++.+++|+++|++++++.+++.++|.++||++++++.... +|++.|+..++..++.+++.+++|+++.... +.+.+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---NFVILVALLMGIAVLGWLASLFIPKTGNAAP-DLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeec
Confidence 9999999999999999999999999999999999987654 8999996666666665566666776541100 00000
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCC
Q 010185 237 EAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGF 315 (516)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 315 (516)
. ... ++....++.+.+++ .++.. .+..+........+..+.|.++++ +|.
T Consensus 208 ~---------------~~~----------~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 R---------------NII----------RSTITLLKYAKADK---RIWLA-ILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c---------------chH----------HHHHHHHHHHhcCc---hHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 000 00011233333322 22222 222222222334455567776665 699
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC-----CCcccchhHHHH
Q 010185 316 GAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE-----GTLTKFDADFVL 390 (516)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 390 (516)
++...+++.+..+++.+++.++.+++.++..+++.+..+.++.++..+.+.+........... ......+.+...
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL 338 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence 999999999999999999999999999988777666555555544444333210000000000 000001223333
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
+..++++.+.+ ...+...+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+.
T Consensus 339 ~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 339 IDLFGLAAAGG-LYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHH-HhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332 33344567777999999999999999999999999999999988753
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=218.88 Aligned_cols=340 Identities=12% Similarity=0.066 Sum_probs=219.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHH---hc-----hhhhHHHHHHHhhhhc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIING---AA-----VNIAMLIIGRLMLGVG 146 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~ 146 (516)
+|.+..+.+++.+++.++..+++++.|+++||+|||+.++.+....+++..... +. +....+++.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999999999987776665443321 12 2234556778999999
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCC
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDT 225 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~ 225 (516)
.+...+....+..|..+ ++++.++......++|.+++|++++.+... +||.+|++.+++.++..+..+. .||+
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI----DPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred hccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc----CchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888888877777532 345677788888899999999998877543 8999999988888776655544 4554
Q ss_pred hHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHh
Q 010185 226 PNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFY 305 (516)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (516)
|+. ++..+. .+ .++++++..+..++++++ +.+..... .+.....+.....+
T Consensus 187 ~~~-------~~~~~~----~~--------------~~~~~~~~~~~~~~l~~~---~~~~~~l~-~~~~~~~~~~~~~~ 237 (396)
T TIGR00882 187 PSS-------ATVANA----LG--------------ANASAFSLKLALELFRQR---KFWMFVLY-VVGVACVYDVFDQQ 237 (396)
T ss_pred chh-------hhhhcc----cc--------------cccCCCCHHHHHHHHcCC---cHHHHHHH-HHHHHHHHHHHHHH
Confidence 311 000000 00 000000111234444433 22222222 22222222333334
Q ss_pred HHHHHHhc----CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 306 APVLFKTI----GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 306 ~~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
.+.++++. +.+....+.......+...++.+..+++.||+++|+.+.++..+.++...+....
T Consensus 238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------- 304 (396)
T TIGR00882 238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------- 304 (396)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------
Confidence 55554442 4555667888888888999999999999999999999888877777665554331
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH-HHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHH
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI-NVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAG 460 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~ 460 (516)
.+.+.......+.+.+... .......+..+..|++.++++.+. .+....+|+++++.+.|++.+..|+...+.+.+
T Consensus 305 --~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~ 381 (396)
T TIGR00882 305 --TTALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLG 381 (396)
T ss_pred --CChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHH
Confidence 1222222222222222211 111233445566788888887766 578899999999999999999988765555544
Q ss_pred HHHHH
Q 010185 461 FVAVM 465 (516)
Q Consensus 461 ~~~~~ 465 (516)
+..++
T Consensus 382 ~~~~i 386 (396)
T TIGR00882 382 CIVLL 386 (396)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=249.24 Aligned_cols=327 Identities=10% Similarity=-0.033 Sum_probs=222.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHH---hchhhhHHHHHHHhhhhcccccccch
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIING---AAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 445679999999999999999999999999999999998877666655544 45789999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccC------CcchhHHHHHhHHHH-HHHHHhhccCCCChH
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISG------GWGWRVSLALAAVPA-ILMTVGSFFLPDTPN 227 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~------~~~wr~~f~~~~~~~-~~~~~~~~~~~e~p~ 227 (516)
.+++.|++|+++|++++++...+..+|.++|+++++++..... ..+|++.+.+..+.. ++.+++.+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 9999999999999999999999999999999999988765410 113444444433333 333344455787763
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHH
Q 010185 228 SILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAP 307 (516)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (516)
+...+.+.++ . ...+.....++.+++++ .++..... .+...........+.|
T Consensus 205 ~~~~~~~~~~----------~--------------~~~~~~~~~~~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKK----------Y--------------LFPKLLWRNLKLLRSDR---VLWLAIIG-LSYFWFISQLAQANFP 256 (1146)
T ss_pred CCcccccccc----------c--------------ccHHHHHHHHHHHhcCc---HHHHHHHH-HHHHHHHHHHHHHhhH
Confidence 2111000000 0 00000011233333322 22222222 2222222233444555
Q ss_pred HHH-HhcCCCch-hHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccch
Q 010185 308 VLF-KTIGFGAE-ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFD 385 (516)
Q Consensus 308 ~~~-~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (516)
.++ +.+|++.. ..+++.+..+++.+++.++.+++.||+++++.+.++.++++++.+++... .+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 321 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---------------PS 321 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---------------hh
Confidence 554 45799988 89999999999999999999999999999888877777666666555442 12
Q ss_pred hHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 010185 386 ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC 448 (516)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~ 448 (516)
.+..++..++++.+.+. ..+...+++.+..|++.||+++|+.+++..++..+++.+.+.+..
T Consensus 322 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 322 LASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333333332 234455677788999999999999999999998887777665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=217.90 Aligned_cols=321 Identities=12% Similarity=0.068 Sum_probs=218.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-----chhHH-HHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMY-----GRKMS-MTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVG 146 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 146 (516)
|+|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 8999999999766 455555 99999999998 89886 567788888887777777 5667788888889999
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccC-----CcchhHHHHHhHHHHHHHHHhhcc
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISG-----GWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+....+ .++||..|++.++..++..+..++
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999877764432 223999999998877776655554
Q ss_pred -CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhH
Q 010185 222 -LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300 (516)
Q Consensus 222 -~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (516)
.||+++. +++.++ + +++.+.+++++++++..++.+.......+ ....+.
T Consensus 177 ~~~e~~~~---~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 226 (356)
T TIGR00901 177 LAKEPQED---ASVPKP----------------L----------TQAVLKPIREFFQRKNMIQALLLLLLIVL-YKLGDS 226 (356)
T ss_pred hccCCCcc---cccchh----------------H----------HHHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHH
Confidence 5664310 000000 0 00011234445544433334433333232 333445
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHH-HHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITG-VVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
....+.|.+.++.|+++.+.+......+ +..+++.++++++.||+|+|+.+..+.++.++...++.+..... ...
T Consensus 227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~--- 302 (356)
T TIGR00901 227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG-HHD--- 302 (356)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc---
Confidence 5666777777779999999888887766 57789999999999999999988877777666655444321000 000
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHH
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNM 433 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 433 (516)
.......+......++...+ .....+....+..|.+|++.||+.+|+.+...+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 GITFPHLLMLFLTITLEAVT-GGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccccchHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 00001112222222222222 223355667788899999999999999877654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=232.65 Aligned_cols=306 Identities=15% Similarity=0.174 Sum_probs=211.6
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY 107 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~ 107 (516)
+..++..+......+.++.+. +.+.++| +++..+.|++.+.+.++++++.++.|+++||+
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l--~~iek~F------------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~ 95 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSL--TTIERRF------------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL 95 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--hhhhhhh------------------CCCCCcceeeeehhhHHHHHHHHHHHHhhccc
Confidence 334445555556666665444 4444444 89999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhch---------------------------------------------------hhhHH
Q 010185 108 GRKMSMTVGGISFLIGAIINGAAV---------------------------------------------------NIAML 136 (516)
Q Consensus 108 Grr~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~l 136 (516)
|||+++.+++++++++++++++.+ .+..+
T Consensus 96 ~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (633)
T TIGR00805 96 HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLF 175 (633)
T ss_pred CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhh
Confidence 999999999999999999998763 24577
Q ss_pred HHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCc-----------------
Q 010185 137 IIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGW----------------- 199 (516)
Q Consensus 137 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~----------------- 199 (516)
+++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++.+.....++
T Consensus 176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW 255 (633)
T TIGR00805 176 LVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW 255 (633)
T ss_pred HHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH
Confidence 899999999999999999999999999999999999999999999999999998876432110
Q ss_pred --chhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhc
Q 010185 200 --GWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILR 277 (516)
Q Consensus 200 --~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (516)
.||..|++.+++.++..+.++++|++.+....+.+.++.++. .....++. ...+ .....++....++.+++
T Consensus 256 iGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~~--~~~~---~~~~~~~~~~~~~~Ll~ 328 (633)
T TIGR00805 256 IGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETE--KLEKSEDK--SRKK---NSDITKDFPKIIKRLLC 328 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhh--cccccccc--cchh---hhhhHHHHHHHHHHHHc
Confidence 378889888888877666666666543110000000000000 00000000 0000 00000111122334444
Q ss_pred cCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHH-HHHHHhHhHhhhhcccCC--chHHHh
Q 010185 278 GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGV-VNVVATLVSVFSVDKFGR--RVLFLE 353 (516)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--r~~~~~ 353 (516)
+ + .++...+..+.....+..+..+.|.++++ +|+++.+++++.....+ +.+++.++.|+++||++. |+.+..
T Consensus 329 n---~-~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~ 404 (633)
T TIGR00805 329 N---P-IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYF 404 (633)
T ss_pred C---c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHH
Confidence 2 2 34444444455555666777888888775 79999999999887776 568999999999999984 466666
Q ss_pred hhHHHHHHHHH
Q 010185 354 GGVQMFICQCL 364 (516)
Q Consensus 354 ~~~~~~~~~~~ 364 (516)
+.+...++.++
T Consensus 405 ~~~~~~~~~~~ 415 (633)
T TIGR00805 405 AICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHH
Confidence 66665555544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=191.71 Aligned_cols=334 Identities=13% Similarity=0.107 Sum_probs=253.0
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+...
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 45559999999999999999999999999999999999999999999999999999888 88899999999999999999
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHh
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILE 231 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 231 (516)
...++++.+.||++ -+..++++....++|..+++.++--+.... .+||....+-++++++.++.++--...++
T Consensus 118 VLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~~r~~---- 190 (395)
T COG2807 118 VLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQALREQ---- 190 (395)
T ss_pred HhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhccccc----
Confidence 99999999999855 899999999999999999988865555443 38999999999999888777654211110
Q ss_pred cCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 010185 232 RGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311 (516)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (516)
....+.+..+...+++++. .+...+++..+...++....|+|.++.
T Consensus 191 ------------------------------~~~~~~~~~~~~~vw~~~~----aW~vtLfmGlqS~~~Y~~~~WLP~ili 236 (395)
T COG2807 191 ------------------------------AASIATKLVSVRKVWRSPL----AWQVTLFMGLQSLLYYIVIGWLPAILI 236 (395)
T ss_pred ------------------------------ccccccccccccccccCch----hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0011111223334444333 444455566677778899999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
+.|+|+.++|.+.+...+..++.++....+.+|. .+|+.......++.++.+.+.+.- .+..+.+
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P-------------~~~~~lw- 302 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP-------------GQLPILW- 302 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh-------------hhHHHHH-
Confidence 9999999999999999999999999999999975 456666666666666666665421 1122222
Q ss_pred HHHHHHHHhhhcCcccccceeec-ccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHH
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPS-EVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAV 464 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~ 464 (516)
+.+.+.+.+ +..++....+. +...++..+.-.|+.+..+++-.+.+|.++|++.|..| |...+...+.+.+
T Consensus 303 --~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 303 --ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred --HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 233333322 22344333333 34455777888999999999999999999999999988 5444444433333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=209.36 Aligned_cols=347 Identities=12% Similarity=0.106 Sum_probs=221.8
Q ss_pred cccCCchh-HHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 74 YCKFDSQL-LTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 74 ~~~~s~~~-~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
|+|+++.+ .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.+++++++.+.+.|++.|++.|+..
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHH---hHHHHHHHHHhhccCCCChHHH
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLAL---AAVPAILMTVGSFFLPDTPNSI 229 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~~ 229 (516)
+...++..|+|+++|+++.++..++..+|.+++++++..+. .+|||+.+.+ ......+.+++.+++|..+|.+
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 99999999999999999999999999999999999988743 3488875544 3333344556667788777666
Q ss_pred HhcCCHHHHHHHHHHHhCCCCcHH-HHHH-HHHHH-HHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 230 LERGHVDEAKKMLQKIRGTPNVDE-EFQD-LYDAS-EAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
.-+++.+.......+.....+.+. +..+ .+... ..-+.....+++..+++. .+...+-+....++++.+..|.
T Consensus 210 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~----vl~WSlWwa~a~~g~~qv~~Y~ 285 (511)
T TIGR00806 210 FFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ----LLLWSLWWVFNSAGYYLITYYV 285 (511)
T ss_pred hhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc----hhhhhHHHHHHhhHHHHHHHHH
Confidence 544432110000000000000000 0000 00000 000000111222222221 2222222333444666777777
Q ss_pred HHHHHhcCC-CchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccch
Q 010185 307 PVLFKTIGF-GAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFD 385 (516)
Q Consensus 307 ~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (516)
..+.++..- .+...|..-++..+.+.+..+..|++-.++.+...+.++.....-+.+ +.++. ..++
T Consensus 286 Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gl-l~~m~------------~t~~ 352 (511)
T TIGR00806 286 HTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGL-VFWMS------------QSHD 352 (511)
T ss_pred HHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH-hhhhh------------cccc
Confidence 777776532 222556777777888888899999885555332223322222222221 11111 1135
Q ss_pred hHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Q 010185 386 ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVF 443 (516)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 443 (516)
.|.......++...+.... ++...-+++....+..|...|++++..-+-..+...+.
T Consensus 353 Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 5555556666666665553 34344444555667779999998887777666665544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=209.53 Aligned_cols=349 Identities=16% Similarity=0.150 Sum_probs=216.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhh
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVY 157 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 157 (516)
+.....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|... .....
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~ 154 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALA 154 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999987666 45566
Q ss_pred hhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhcC-C
Q 010185 158 LSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF--LPDTPNSILERG-H 234 (516)
Q Consensus 158 i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~-~ 234 (516)
++|..|.|.|+...++..........+++.++..+.. +.+|||.|++.++...+.++..++ .|++.+.+..++ .
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s 231 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLS 231 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCc
Confidence 8999999999887777666555555566777554432 348999999998887766544333 443322221111 1
Q ss_pred HHHHHHHHHHHh------------------CC--CCcH--HHHHHHH-------H--HHHH--hhhccCchhhhhccCCc
Q 010185 235 VDEAKKMLQKIR------------------GT--PNVD--EEFQDLY-------D--ASEA--AKQVHHPWTNILRGRYR 281 (516)
Q Consensus 235 ~~~~~~~~~~~~------------------~~--~~~~--~~~~~~~-------~--~~~~--~~~~~~~~~~~~~~~~~ 281 (516)
..+..+.++.+. +. ...+ ....... . --+. ..+++.-..+++++
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~--- 308 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD--- 308 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc---
Confidence 122222222211 11 0000 0000000 0 0011 11112223345543
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCc---hhHHHHHHHHHHHHHHHhHhHhhhhcccCC-chHHHhhhH
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGA---EASLMSAVITGVVNVVATLVSVFSVDKFGR-RVLFLEGGV 356 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~ 356 (516)
+|.+...++..+.....++....+-|.... -++-++ ...++.....+++..++.++.+.+..+++| |+.++++.+
T Consensus 309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~ 388 (599)
T PF06609_consen 309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV 388 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 233444333333333334444444444333 344444 356788888899999999999999998877 444456655
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHH
Q 010185 357 QMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFT 436 (516)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 436 (516)
++.+.+.++... . . ++.........+.+.+.+.... .....+.-..|++.-|++.|+..+++.+|+
T Consensus 389 ~~ta~~Gama~~-----------~-~-~n~~~~i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GG 454 (599)
T PF06609_consen 389 LMTAFCGAMAAV-----------R-P-DNKNAAIAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGG 454 (599)
T ss_pred HHHHHHHHHHHc-----------c-C-CCcchHHHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhh
Confidence 555444444432 1 1 1111222222333333333322 223344456788999999999999999999
Q ss_pred HHHHHHhHHHH
Q 010185 437 FVVGQVFLSML 447 (516)
Q Consensus 437 ~i~~~~~~~~~ 447 (516)
.++..++..+.
T Consensus 455 sIg~aIy~~I~ 465 (599)
T PF06609_consen 455 SIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHH
Confidence 99998886543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=213.61 Aligned_cols=355 Identities=14% Similarity=0.067 Sum_probs=218.4
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh-hchhHHHHHHHHHHHHHHHHHHhchhhhH-HHHHHHhhhhcccccc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRM-YGRKMSMTVGGISFLIGAIINGAAVNIAM-LIIGRLMLGVGVGFAN 151 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~ 151 (516)
++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|+++|+|.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 348899999999999998888999999999999 99999999999999999999999877554 5589999999999999
Q ss_pred cchhhhhhccCCcC--ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHH
Q 010185 152 QVVPVYLSEMAPAK--VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSI 229 (516)
Q Consensus 152 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 229 (516)
+...+++.|.+|++ +|++++++++.+.++|..+||.+++++.+.. |||+.|++.++..++..+...+.++..+..
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~ 200 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLIIALLVYFACRGMVKDI 200 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHcchhhccc
Confidence 99999999999877 4578999999999999999999999887554 899999986553333333333333211100
Q ss_pred H--hcCCHHHHHHHH-------------HHHhCCCCcHHHHHHH----HH--HHHHhhhccCchhhhhccCCcchHHHHH
Q 010185 230 L--ERGHVDEAKKML-------------QKIRGTPNVDEEFQDL----YD--ASEAAKQVHHPWTNILRGRYRPQLTMCT 288 (516)
Q Consensus 230 ~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (516)
. .+++..+..... ................ .. -..++. +. .+.+| ++.+...
T Consensus 201 ~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~--~~--~~~~r----~r~~~~~ 272 (489)
T PRK10207 201 GSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAF--KL--DKTGR----NKMFVAF 272 (489)
T ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh--cC--CHHHH----HHHHHHH
Confidence 0 000000100100 0000000000000000 00 000001 11 12222 1222221
Q ss_pred H--HHHHHHhhhhHHHHHhHHHHHHh-c-----CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchH-------HHh
Q 010185 289 L--IPFFQQFTGINVIMFYAPVLFKT-I-----GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVL-------FLE 353 (516)
Q Consensus 289 ~--~~~~~~~~~~~~~~~~~~~~~~~-~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~ 353 (516)
. +........+....+..+.+.++ . |+.. ....+.....+..++..++.+++.||+++|+. +.+
T Consensus 273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 1 11222222233333444555542 2 2221 22344555566677788888999999998863 666
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHH
Q 010185 354 GGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNM 433 (516)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 433 (516)
++++.+++++.+........ ......+.++++......+.......+.....+.+..|++.+|.++|+.+...+
T Consensus 352 G~~l~~~~~~~~~~~~~~~~------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ 425 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFA------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA 425 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhc------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 77776666654432111110 001112223333333333333444466667777789999999999999999999
Q ss_pred HHHHHHHHHhHHH
Q 010185 434 IFTFVVGQVFLSM 446 (516)
Q Consensus 434 ~g~~i~~~~~~~~ 446 (516)
+|+.++..+....
T Consensus 426 ig~~lg~~l~~~~ 438 (489)
T PRK10207 426 AAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887644
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=206.45 Aligned_cols=381 Identities=12% Similarity=0.065 Sum_probs=236.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh-hchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRM-YGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
+|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 48899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCcCc---cchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCC----CCh
Q 010185 154 VPVYLSEMAPAKV---RGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLP----DTP 226 (516)
Q Consensus 154 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p 226 (516)
..++++|++|+++ |++++++...+.++|.++||++++.+.+. .+||+.|++.++..++..+...+.+ +.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999998764 88899999999999999999998887643 4899999987765554443333322 222
Q ss_pred HHHHhcCCHHHHHHHHHH---------------HhCCCCcHHHHH-H------HHHHHHHhhhccCchhhhhccCCcchH
Q 010185 227 NSILERGHVDEAKKMLQK---------------IRGTPNVDEEFQ-D------LYDASEAAKQVHHPWTNILRGRYRPQL 284 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (516)
+. .++..++..+..++ ....+....... . .........++ ......+ .+...
T Consensus 200 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~- 273 (475)
T TIGR00924 200 SV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVAR-NKMYA- 273 (475)
T ss_pred CC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHH-hHHHH-
Confidence 10 00000000000000 000000000000 0 00000000000 0111111 11111
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCc----hhHHHHHHHHHHHHHHHhHhHhhhhcccCC-----chHH--H
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGA----EASLMSAVITGVVNVVATLVSVFSVDKFGR-----RVLF--L 352 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----r~~~--~ 352 (516)
...+++........+.......+.+.++ .+.+. ...+++.++..+..++..++..++..|++| +... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 2222222222233333334434444433 33221 125677888888888877765544333333 3333 5
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHH
Q 010185 353 EGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432 (516)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 432 (516)
++.++.+++++.+.+..... ......+.++++....+.........|....+..+..|++.||+.+|+.....
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~-------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFA-------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhc-------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 66777777766665432110 00012233344444444445555667888888899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcchhhHH-HHHHHHHHHHHHHhh
Q 010185 433 MIFTFVVGQVFLSMLCHFKFGLFF-FFAGFVAVMTVFVFY 471 (516)
Q Consensus 433 ~~g~~i~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 471 (516)
.+|..+++.+.....+..++...+ ..+.++.+++++.++
T Consensus 427 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999888776665544333 334444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=207.61 Aligned_cols=378 Identities=15% Similarity=0.114 Sum_probs=232.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc------hhhhHHHHHHHhhhhccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA------VNIAMLIIGRLMLGVGVG 148 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~ 148 (516)
+|++..+.+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++ ++++.+++.|++.|+|.+
T Consensus 57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 389999999998874 4456778889999999999999999999999999999997 689999999999999999
Q ss_pred ccccchhhhhhccCCcCccchhHHHHHHHHHHHHHH-HHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc-c--CCC
Q 010185 149 FANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILI-ANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF-F--LPD 224 (516)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~--~~e 224 (516)
...+.....+.+|+| ++||++.++...+.++|.++ +++..+++. .+|+..|++.+++.++..++.. + .|+
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 999999999999997 67999999999999999975 455544443 2688888888877776554433 2 455
Q ss_pred ChHHHHhcCCHHHHHHHHHHHhCCCC---------------------------------------cHHHHHH--H-----
Q 010185 225 TPNSILERGHVDEAKKMLQKIRGTPN---------------------------------------VDEEFQD--L----- 258 (516)
Q Consensus 225 ~p~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~--~----- 258 (516)
.|++..++++.+++++..++.++... ....... .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~ 289 (591)
T PTZ00207 210 FHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVI 289 (591)
T ss_pred chhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 55555444333333332221111100 0000000 0
Q ss_pred -------------------------H--H-HH--HHhh--------h-ccCchh-hhhccCCcchHHHHHHHHHHHHhhh
Q 010185 259 -------------------------Y--D-AS--EAAK--------Q-VHHPWT-NILRGRYRPQLTMCTLIPFFQQFTG 298 (516)
Q Consensus 259 -------------------------~--~-~~--~~~~--------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (516)
. + .. ..++ + ...... .+++......+| ++.+.+++....
T Consensus 290 ~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~W-ll~~~~~cg~g~ 368 (591)
T PTZ00207 290 FPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLW-CLLWSIFCCVGA 368 (591)
T ss_pred HHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHH-HHHHHHHHhhCc
Confidence 0 0 00 0000 0 000000 111112223334 444444444444
Q ss_pred hHHHHHhHHHHHHhc-CCCchh--HHHHHHHHHHHHHHHhHhHhhhhcccCCc--------hHHHhhhHHHHHHHHHHHH
Q 010185 299 INVIMFYAPVLFKTI-GFGAEA--SLMSAVITGVVNVVATLVSVFSVDKFGRR--------VLFLEGGVQMFICQCLVGI 367 (516)
Q Consensus 299 ~~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~~~~~~~~~~~~~~~~~~~ 367 (516)
-......+-.+.+.+ |.+.+. ...+.+..++++.+|++..|.+.....+| +.......++.++.+++..
T Consensus 369 gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~ 448 (591)
T PTZ00207 369 HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFL 448 (591)
T ss_pred hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 445556666777777 773333 23378889999999999999887222222 1222122223333333333
Q ss_pred HHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHH-HHHhHHH
Q 010185 368 MLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVV-GQVFLSM 446 (516)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~~~~~~ 446 (516)
. .+...+.+..+..+.......++....++|+|. ++-|+-+-+.....-+|+.+. ..++|.+
T Consensus 449 ~----------------~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~ 511 (591)
T PTZ00207 449 T----------------LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW 511 (591)
T ss_pred H----------------CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 1 111223333333333333345666778889999 888888888888878888777 5677888
Q ss_pred Hhhcc--------------hhhHHHHHHHHHHHHHHHhhcccCCC
Q 010185 447 LCHFK--------------FGLFFFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 447 ~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
+|+-. ...+.+.++++.+..+....+..++|
T Consensus 512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 87531 13556666666666665554444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=202.03 Aligned_cols=372 Identities=10% Similarity=-0.025 Sum_probs=232.8
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHH--HHHHHHHHHHHHHhh-HHHH
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLF--TSSLYLAALVASFFA-SVVT 104 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~i~~~~~-g~l~ 104 (516)
..++..++..|...+...+.. |.+.++. |.+.+++|++ .+++.+...+.+|++ ++.+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~l--p~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~ 63 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDAL--PTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWS 63 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344555677788777765554 6666655 8899999997 467788888888888 5579
Q ss_pred hhhchhHHHHHHHHH-HHHHHHHHH---hchh-hhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHH
Q 010185 105 RMYGRKMSMTVGGIS-FLIGAIING---AAVN-IAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAIT 179 (516)
Q Consensus 105 dr~Grr~~~~~~~~~-~~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 179 (516)
||+||||..++.+.+ .++.....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..
T Consensus 64 ~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~ 143 (390)
T TIGR02718 64 WRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM 143 (390)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH
Confidence 999999887665533 222222222 2222 33445555666677777778888888899888888888888888889
Q ss_pred HHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHH
Q 010185 180 IGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLY 259 (516)
Q Consensus 180 ~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (516)
+|.++++...+.+.+. .|||..|++.+++.++..+..++++|+++. +++.+
T Consensus 144 lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~----------------------- 194 (390)
T TIGR02718 144 IGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP----------------------- 194 (390)
T ss_pred HHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc-----------------------
Confidence 9999999876665543 399999999998877666555554443210 00000
Q ss_pred HHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHH-HHHHHhHhH
Q 010185 260 DASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGV-VNVVATLVS 338 (516)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~ 338 (516)
++...+.++.+|++..+...... + ...........+.+.++++.|+++++.+......+. ..+++.++.
T Consensus 195 ------~~~~~~~~~~l~~~~~~~~~~~~---~-l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~ 264 (390)
T TIGR02718 195 ------LARRASLFRFFRRPLAWSLLALA---L-LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGG 264 (390)
T ss_pred ------hhhHHHHHHHHcCcCHHHHHHHH---H-HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 00011233444433322222221 2 222223334445666777789999999998888765 666778999
Q ss_pred hhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCch
Q 010185 339 VFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL 418 (516)
Q Consensus 339 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 418 (516)
+++.||+|+|+.+..+..+.++..+........ ..............+.....+.. .+.......+..++
T Consensus 265 g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 334 (390)
T TIGR02718 265 AWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF---------WLAPGIAVAWSCSAFGSLITGIT-SVAIYTAFMRFAGD 334 (390)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc---------ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 999999999998887666553333222211100 00011111111111111112222 22333333345554
Q ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHH
Q 010185 419 -EIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVF 468 (516)
Q Consensus 419 -~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (516)
+.+++.+++.+...++|..++|.+.|.+.|..|+...+..++.+.+.+.+
T Consensus 335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998886666666555555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=197.32 Aligned_cols=335 Identities=11% Similarity=0.042 Sum_probs=213.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHh----hhch-hHHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHhh
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTR----MYGR-KMSMTVGGISFLIGAIINGAAVN------IAMLIIGRLML 143 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 143 (516)
+|++..++|.+..+..+..++..|+.|+++| |+|| |+.++++.+..+++..++...++ +..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999 6698 67777788888888766644332 33566666777
Q ss_pred hhcccccccchhhhhhccC-CcCccchhHHHHHHHHHHHHHHHHHHHhhh----ccccCCcchhHHHHHhHHHHHHHHHh
Q 010185 144 GVGVGFANQVVPVYLSEMA-PAKVRGALNIGFQMAITIGILIANLVNYGT----AKISGGWGWRVSLALAAVPAILMTVG 218 (516)
Q Consensus 144 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~----~~~~~~~~wr~~f~~~~~~~~~~~~~ 218 (516)
+++.....++..++..|.. ++++|.+..++...+.++|..+.+.+...+ ....+..+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999998 588999999987777777766555443322 11112236888887777776665544
Q ss_pred hcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccC-CcchHHHHHHHHHHHHh
Q 010185 219 SFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGR-YRPQLTMCTLIPFFQQF 296 (516)
Q Consensus 219 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 296 (516)
.++ .+|.+.... .+.+++++.++++.++.. +++++...+.. .+...
T Consensus 197 ~~~~~~e~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~-~~~~~ 244 (473)
T PRK10429 197 TLRNVHEVYSSDN-------------------------------QVSAEGSHLTLKDIVALIYKNDQLSCLLGM-ALAYN 244 (473)
T ss_pred HHcCceecCCccc-------------------------------cccccccCCCHHHHHHHHhcCHHHHHHHHH-HHHHH
Confidence 443 666531000 000001122333333211 22333333333 33333
Q ss_pred hhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 297 TGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
........+.+++.+....+....+.+.....+..+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~----- 319 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA----- 319 (473)
T ss_pred HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344444455555655443345556667777778889999999999999999999887776655555444332110
Q ss_pred CCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 377 GEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA-------LEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
.+.+.+..++...+...+.+ ...+..+++.+|..+ .+..|...|...+...++..+++.+.|.+.+.
T Consensus 320 -----~~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 320 -----APHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred -----CchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222233323222 233455666677744 34456689999999999999999999999886
Q ss_pred cch
Q 010185 450 FKF 452 (516)
Q Consensus 450 ~g~ 452 (516)
.|+
T Consensus 394 ~Gy 396 (473)
T PRK10429 394 IGY 396 (473)
T ss_pred cCC
Confidence 654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=184.94 Aligned_cols=378 Identities=12% Similarity=0.134 Sum_probs=233.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHh----hhchhHHHHH-HHHHHHHHHHHHHhchhhh----------------
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTR----MYGRKMSMTV-GGISFLIGAIINGAAVNIA---------------- 134 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~~~~~~---------------- 134 (516)
|.+..+.+++..+..+...+.+|+.|+++| |+||||.+++ +.+...++.++.+++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 5999998887 4667777777888877653
Q ss_pred -HHHHHHHhhhhcccccccchhhhhhccCCcCcc--chhHHHHHHHHHHHHHHHHHHHhhhc--ccc----C------Cc
Q 010185 135 -MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVR--GALNIGFQMAITIGILIANLVNYGTA--KIS----G------GW 199 (516)
Q Consensus 135 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~i~~~~~--~~~----~------~~ 199 (516)
.++++-.+..++.....++..++++|.+|+++| +.+.++.+.+.++|.++|+.++++.. ... . ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333344557777888889999999998865 57999999999999999999988641 110 0 02
Q ss_pred chhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhcc
Q 010185 200 GWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRG 278 (516)
Q Consensus 200 ~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (516)
+.|..|++.++..++..+...+ .+|.|.... +...++ +.+.. ++.+.+..++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~------~~~~~---------------~~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINS------EAAPP---------------SKHGEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhh------hcccc---------------cccchhhhHHHHHHH
Confidence 6789999988887777666555 888762110 000000 00000 000001122333321
Q ss_pred -CCcch-HHHHHHHHHHHHhhhhHHHHHhH-HHHHHh-cCCCch------h----HHHHHHHHHHHHHHHhHhHhhhhcc
Q 010185 279 -RYRPQ-LTMCTLIPFFQQFTGINVIMFYA-PVLFKT-IGFGAE------A----SLMSAVITGVVNVVATLVSVFSVDK 344 (516)
Q Consensus 279 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~s~~------~----~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (516)
+..++ +...+...++.+. +...+..|. +++-++ ++-++. + ..+.....++...+.+++..++.+|
T Consensus 253 ~~~mP~~m~~l~~vqffsW~-a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWI-AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233 3333334444444 344444444 444443 332221 1 2344455566666777888899999
Q ss_pred cCC-chHHHhhhHHHHHHHHHHHHHHHHhcCC-C--CC-CCcccch--hHHHHHHHHHHHHhhhcCcccccceeecccCc
Q 010185 345 FGR-RVLFLEGGVQMFICQCLVGIMLALKFGL-R--GE-GTLTKFD--ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA 417 (516)
Q Consensus 345 ~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 417 (516)
+|+ |+...++.++.++++....++.....+. . +. ....+.. .+..+......+..+ .....++++++++..|
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL-AITYSIPFALASIRSS 410 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHcc
Confidence 985 6777888788888877776543211000 0 00 0000001 122333333333332 2345688888889888
Q ss_pred h--hhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc--hhhHHHHHHHHH-HHHHHHhhcccCCC
Q 010185 418 L--EIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK--FGLFFFFAGFVA-VMTVFVFYMVPETR 477 (516)
Q Consensus 418 ~--~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 477 (516)
+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.++++.. +.++...+.+|+++
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5 455999999999999999999988888666655 334445555544 44455556667654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=191.59 Aligned_cols=352 Identities=13% Similarity=0.060 Sum_probs=209.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh-hchhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRM-YGRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+.++++|+++|+|.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 48899999999888877777777899999999 5999999999999999999999874 566778899999999999999
Q ss_pred chhhhhhccCCcCc--cchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc----cCCCCh
Q 010185 153 VVPVYLSEMAPAKV--RGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF----FLPDTP 226 (516)
Q Consensus 153 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~----~~~e~p 226 (516)
...+++.|++|+++ |..++++++.+.++|..++|.+++++.+. .|||+.|++.++..++..+... .++|.+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 99999999998653 45688999999999999999999888654 4899999987765444332222 233321
Q ss_pred HHHHhcCCHHHHHHH-----------HHH-HhCCCCcHHHHHHH---HHHHHHhhhccCchhhhhccCCcchHHHHHHHH
Q 010185 227 NSILERGHVDEAKKM-----------LQK-IRGTPNVDEEFQDL---YDASEAAKQVHHPWTNILRGRYRPQLTMCTLIP 291 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (516)
+.. .+++.+..... ... .....+........ .......+.. ... +...+++....+.+.
T Consensus 209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 282 (500)
T PRK09584 209 SKP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA-FAM----KGAARRKMIVAFILM 282 (500)
T ss_pred CCC-CccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hhc----CHHHHHHHHHHHHHH
Confidence 100 00001110000 000 00000000000000 0000000000 000 001122222222211
Q ss_pred HHHHhhhhHHHHHhHHHHHHh---cCCC------chhHHHHHHHHHHHHHHHhHhH----hhhhcccCCchHHHhhhHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKT---IGFG------AEASLMSAVITGVVNVVATLVS----VFSVDKFGRRVLFLEGGVQM 358 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~---~g~s------~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~r~~~~~~~~~~ 358 (516)
.....++......+..+.. .+.+ ....+++.++..+..++..++. +++.+|.+..+.+.+++++.
T Consensus 283 --~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~ 360 (500)
T PRK09584 283 --LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLC 360 (500)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHH
Confidence 1111122222223322221 1111 1224566667776666666666 44455555556777888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHH
Q 010185 359 FICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFV 438 (516)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 438 (516)
+++++.+....... +. ....+.++.+..............|....++.+..|++.||+++|+......+++.+
T Consensus 361 ~l~f~~l~~~~~~~-~~------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~ 433 (500)
T PRK09584 361 SGAFLVLPLGAKFA-ND------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI 433 (500)
T ss_pred HHHHHHHHHHHHhc-CC------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766532210 00 001122244444444455555667888888889999999999999888777777777
Q ss_pred HHHHhH
Q 010185 439 VGQVFL 444 (516)
Q Consensus 439 ~~~~~~ 444 (516)
+..+.+
T Consensus 434 ~g~~~~ 439 (500)
T PRK09584 434 AGYVAN 439 (500)
T ss_pred HHHHHH
Confidence 766664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=177.50 Aligned_cols=393 Identities=13% Similarity=0.109 Sum_probs=270.4
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHH
Q 010185 17 GGVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVA 96 (516)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 96 (516)
.+..+++|++++++++-.+..+++..-++++ ..+.++|+ + +....-|+.-+|++.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY-----------------G-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh-----------------c-chHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999998887776655 45666664 5 6677889999999999999
Q ss_pred HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc------hhhh--HHHHHHHhhhhcccccccchhhhhhccCCcCccc
Q 010185 97 SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA------VNIA--MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRG 168 (516)
Q Consensus 97 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 168 (516)
.+++-|+.|++|-|...+++..+..+|..+-..+ +.++ ....+..+.+.++-.....-..+..-||+++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 9999999999999999999999999999998877 3445 6778889999988888877778889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccc---CCcchhH--HHHHhHHHHHHHHHhhcc-C---CCChHHHHhcCCHHHHH
Q 010185 169 ALNIGFQMAITIGILIANLVNYGTAKIS---GGWGWRV--SLALAAVPAILMTVGSFF-L---PDTPNSILERGHVDEAK 239 (516)
Q Consensus 169 ~~~~~~~~~~~~G~~i~~~i~~~~~~~~---~~~~wr~--~f~~~~~~~~~~~~~~~~-~---~e~p~~~~~~~~~~~~~ 239 (516)
.+..+-.++..+|.+++.++...+.... ++..|.. .|+....++.+.+++..+ . |.+|....+.
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~------- 248 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA------- 248 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh-------
Confidence 9999999999999999988877776554 3346765 355444444333333222 3 3334111100
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchh
Q 010185 240 KMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEA 319 (516)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 319 (516)
...+.+-..+.++.++++ + +....+.+......++.....+...+...|++...
T Consensus 249 ----------------------~~~~~~f~~si~~~~~n~---~-F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~ 302 (480)
T KOG2563|consen 249 ----------------------ALQDASFPKSIKSCFKNR---Q-FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF 302 (480)
T ss_pred ----------------------hhhcCcHHHHHHHHHcCc---c-HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccc
Confidence 000011122333444433 2 33333434444444444444444344445888888
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhcccCCc-hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHH
Q 010185 320 SLMSAVITGVVNVVATLVSVFSVDKFGRR-VLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVA 398 (516)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
+|+......+++++++.+.|.+.||.++- ....+......++.+.+..+. ......+.+...+...+
T Consensus 303 aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t------------~~~~~~viv~~t~~~~g 370 (480)
T KOG2563|consen 303 AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT------------LFLGDSVIVFTTCGLLG 370 (480)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh------------ccCCceEehhhhHHHHH
Confidence 99999999999999999999999999764 344444443333322221111 11233344555556666
Q ss_pred hhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc----hhhHHHHHHHHHHHHHHHhhccc
Q 010185 399 AFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK----FGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
.++.+..|+..-+..|..-|..-++..|+.+..+++.+++-..+.+...+..+ +...-+......+..+....+.+
T Consensus 371 ~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r 450 (480)
T KOG2563|consen 371 FFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFR 450 (480)
T ss_pred HhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhh
Confidence 77778889988888897666778899999999999999999999998888776 44444444444444444444444
Q ss_pred C
Q 010185 475 E 475 (516)
Q Consensus 475 ~ 475 (516)
+
T Consensus 451 ~ 451 (480)
T KOG2563|consen 451 P 451 (480)
T ss_pred h
Confidence 3
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=181.89 Aligned_cols=327 Identities=14% Similarity=0.103 Sum_probs=227.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc-hhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYG-RKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
|+|..|+|.+.++..+...++++++|+++||++ +|+++.++.++.++........++++.+++.-++..+...+..|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 889999999999999999999999999999986 6888888888888888888888999999999988898888888888
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHH-HhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLV-NYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERG 233 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 233 (516)
.++..+...+ ++.-.|-.....++|.+++... +..+....+..+..+.+++.+..+++.....+.+|+.|+....+
T Consensus 113 dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~- 189 (400)
T PF03825_consen 113 DSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAK- 189 (400)
T ss_pred HHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccC-
Confidence 8888888753 4445556666667777666443 22222222212333456666666655555555678776100000
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhc
Q 010185 234 HVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTI 313 (516)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (516)
+ +.++....+..+++|+ ++....+ +..+...........|.+.++++.
T Consensus 190 ---~-------------------------~~~~~~~~~~~~llk~---~~~~~Fl-l~~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 190 ---E-------------------------SVKKLLGLDALKLLKN---PRFLVFL-LAAFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred ---C-------------------------CcccccchHHHHHhcC---ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0000001111234443 3333322 223334445566777888888888
Q ss_pred C-CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 314 G-FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 314 g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
| .+....+...++..+..++.-...+++..|+|.|+++.++.+..++=..+++... ++.+.....
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--------------~~~~~~~~~ 303 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--------------DPWPFIVAL 303 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--------------CCcHHHHHH
Confidence 7 7788888888888899999999999999999999999999988888887776631 111221211
Q ss_pred H----HHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHH-HHHHHHHHHHHhHHHHhhcch
Q 010185 393 I----CAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST-NMIFTFVVGQVFLSMLCHFKF 452 (516)
Q Consensus 393 ~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~~~~~~~~g~ 452 (516)
. .+.+..++.. ......++.+..|++.|++++++.+.. ..+|..++..+.|+++|+.+.
T Consensus 304 ~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 1 1234333322 344557788999999999999998875 579999999999999998773
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=192.68 Aligned_cols=329 Identities=12% Similarity=0.077 Sum_probs=206.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh----hch-hHHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHh
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRM----YGR-KMSMTVGGISFLIGAIINGAAVN------IAMLIIGRLM 142 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 142 (516)
++|++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ ++.+++..++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 349999999999999999999999999999999 787 56666787888777766655543 4566666777
Q ss_pred hhhcccccccchhhhhhccC-CcCccchhHHHHHHHHHHHHHHHHHHHhhhccc----cCCcchhHHHHHhHHHHHHHHH
Q 010185 143 LGVGVGFANQVVPVYLSEMA-PAKVRGALNIGFQMAITIGILIANLVNYGTAKI----SGGWGWRVSLALAAVPAILMTV 217 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~ 217 (516)
.+.+......+..++.+|+. ++++|++..++...+..+|..+++.+...+... ....+|+..+.+.++++++..+
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 77777777778889999998 457899888888888888877776544322211 1234899888888877766655
Q ss_pred hhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHh
Q 010185 218 GSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQF 296 (516)
Q Consensus 218 ~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (516)
..++ .+|.++. + + +++.+.+...+.+++++..+..... .+...
T Consensus 199 ~~~~~~~e~~~~-----~--~-------------------------~~~~~~~~~~~~~~~n~~~~~l~~~----~~~~~ 242 (444)
T PRK09669 199 CCFFMTKERYTP-----E--V-------------------------DNSSSVWKDLKLLLGNSQWRIMFIF----NVVLL 242 (444)
T ss_pred HHhCCeEEecCC-----C--C-------------------------cCCCCHHHHHHHHhCCchHHHHHHH----HHHHH
Confidence 4433 5553210 0 0 0000011223334443332222221 22222
Q ss_pred hhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 297 TGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
..........+++.+..-.+++..+.......+..+++.++.+++.||+|+|+.+..+..+..+..+.+...
T Consensus 243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-------- 314 (444)
T PRK09669 243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-------- 314 (444)
T ss_pred HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 222222333344433321123333445555567778888899999999999998887766554433322221
Q ss_pred CCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 377 GEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA-------LEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
..++.+...+...+.+.+.+ ...+..+++.+|..+ .+..|...|..+.+..+|..+++.+.|.+.+.
T Consensus 315 -----~~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 315 -----PPSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred -----CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222222333233333332 345667777777764 33456778999999999999999999999887
Q ss_pred cch
Q 010185 450 FKF 452 (516)
Q Consensus 450 ~g~ 452 (516)
.|+
T Consensus 389 ~Gy 391 (444)
T PRK09669 389 VDY 391 (444)
T ss_pred cCC
Confidence 765
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=191.16 Aligned_cols=365 Identities=13% Similarity=-0.001 Sum_probs=226.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc-----hhHHHHHHHHHHH-HHHHHHHhchhhhHHH-HHHHhhhhcc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYG-----RKMSMTVGGISFL-IGAIINGAAVNIAMLI-IGRLMLGVGV 147 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~ 147 (516)
+|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....+..++..... +.+++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 399999999999999999998666 999999998 7888888877763 4434444445544444 4889999999
Q ss_pred cccccchhhhhhccCCcCccchh---HHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC
Q 010185 148 GFANQVVPVYLSEMAPAKVRGAL---NIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD 224 (516)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 224 (516)
+...++.-++..|..+ +++... .+.......+|.++++.+++.+.+. .+||..|++.+++.++..+...+++|
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998 544443 3333344458999999998877644 38999999988887777665666888
Q ss_pred ChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHH-HHhhhhHHHH
Q 010185 225 TPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFF-QQFTGINVIM 303 (516)
Q Consensus 225 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 303 (516)
++.....+.+ ++... ....... ...+.. +...+++.+..+++.++....+.++ ..........
T Consensus 211 ~~~~~~~~~~-~~~~~--------~~~~~~~----~~~~~~---~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~ 274 (468)
T TIGR00788 211 RRAFVRPRIG-TYLEM--------NMALLTL----GVLANV---KVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGS 274 (468)
T ss_pred cccccccccc-ccchh--------hhhhhhh----hHHHHH---HHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCce
Confidence 5310000000 00000 0000000 000000 0111112111112333332322222 1111111111
Q ss_pred HhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 304 FYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 304 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
.+. ...+..|+++...|......+++.+++..+.+++.+|++.|+.+.++.++.+++.+......... .. ...-
T Consensus 275 ~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~-~~----~~gi 348 (468)
T TIGR00788 275 VFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW-NL----AFGI 348 (468)
T ss_pred eEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc-cc----ccCC
Confidence 111 11235799999999999999999999999999999999999999888887777665543211000 00 0000
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-----hhhHHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-----FGLFFFF 458 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-----~~~~~~~ 458 (516)
...+.......+...+.+....+. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.+..| +...+..
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 112222223333344444444444 5666799999999999999999999999999999999998877 5545444
Q ss_pred HHHHHHHHH
Q 010185 459 AGFVAVMTV 467 (516)
Q Consensus 459 ~~~~~~~~~ 467 (516)
..++.+..+
T Consensus 428 i~i~~~~~l 436 (468)
T TIGR00788 428 ILGHSLAPL 436 (468)
T ss_pred HHHHHHHHH
Confidence 444443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=182.32 Aligned_cols=329 Identities=15% Similarity=0.194 Sum_probs=233.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHh----hhchh-HHHHHHHHHHHHHHHHHHhc-h-------hhhHHHHHHH
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTR----MYGRK-MSMTVGGISFLIGAIINGAA-V-------NIAMLIIGRL 141 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d----r~Grr-~~~~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~ 141 (516)
+|+++...|.+..+..+..++..|+.|.++| |+||| +.+++|....+++.+++... + ....+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 3889999999999999999999999999999 89975 55556888888888888766 4 2334677777
Q ss_pred hhhhcccccccchhhhhhccCC-cCccchhHHHHHHHHHHHHHHHHHHHhhhccccCC----cchhHHHHHhHHHHHHHH
Q 010185 142 MLGVGVGFANQVVPVYLSEMAP-AKVRGALNIGFQMAITIGILIANLVNYGTAKISGG----WGWRVSLALAAVPAILMT 216 (516)
Q Consensus 142 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~----~~wr~~f~~~~~~~~~~~ 216 (516)
+..++.........++..|..+ +++|.+..+....+..+|.++...+...+....++ .+|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999998 46899999999999999987666665544433321 279999999888888776
Q ss_pred Hhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHH
Q 010185 217 VGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQ 295 (516)
Q Consensus 217 ~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (516)
++..+ .+|.++ +. ++++++.+.+..++++++++. ..... ...+..
T Consensus 192 ~i~~~~~ke~~~------~~------------------------~~~~~~~~~~~~~~~~~~nr~---~~~l~-~~~~~~ 237 (428)
T PF13347_consen 192 LITFFFVKERSV------EV------------------------TEQEKKISLRDSLRSLFRNRP---FRILL-LAFFLQ 237 (428)
T ss_pred hhhhheeeeccc------cc------------------------cccccccccccchhhhcccch---HHHHH-HHHHHH
Confidence 66555 777220 00 001111122333444444333 22222 223333
Q ss_pred hhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcC
Q 010185 296 FTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
...........+++.+. .|.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+++.+...
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---- 312 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---- 312 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----
Confidence 33444555566667665 3444 55677778888999999999999999999999999999998888887766420
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCch-------hhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL-------EIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
++.+...+...+.+.+. .......+++.+|+.+. +..|...|+.++...++..+++.+.+.+.
T Consensus 313 ---------~~~~~~~i~~~l~gi~~-~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 313 ---------GSPWLVLILFILAGIGY-GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ---------hhHHHHHHHHHHhHhhh-cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 13333333333333333 34456777788887763 34588999999999999999999999888
Q ss_pred hhcch
Q 010185 448 CHFKF 452 (516)
Q Consensus 448 ~~~g~ 452 (516)
+..|+
T Consensus 383 ~~~Gy 387 (428)
T PF13347_consen 383 ALVGY 387 (428)
T ss_pred HHhCc
Confidence 76553
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-19 Score=172.25 Aligned_cols=354 Identities=14% Similarity=0.110 Sum_probs=209.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.++++..+ +...+.++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 388999999999999999999999999999999 999999999999999988776543 223344455556667777778
Q ss_pred chhhhhhccCCcC--ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHH-
Q 010185 153 VVPVYLSEMAPAK--VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSI- 229 (516)
Q Consensus 153 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~- 229 (516)
...++++|.+|++ +|..++++...+.++|..++|.+++.+.+. .|||+.|.+.++..++..+..++..+.....
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~ 196 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 8889999999875 689999999999999999999998887643 4899999987654444333332211110000
Q ss_pred H-hcCCHHHHHHHHHHHh-------------CCCCcHHHHHHHHHH----H-----HHhhhccCchhhhhccCCcchHHH
Q 010185 230 L-ERGHVDEAKKMLQKIR-------------GTPNVDEEFQDLYDA----S-----EAAKQVHHPWTNILRGRYRPQLTM 286 (516)
Q Consensus 230 ~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (516)
. .++..++ ++...... ............... . -.....+ .++..++|+..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~er~r~~~ 269 (493)
T PRK15462 197 GVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA------ENQKQRKELGL 269 (493)
T ss_pred CCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHhhHHH
Confidence 0 0000000 00000000 000000000000000 0 0000000 01111223322
Q ss_pred HHHHHH--HHHhhhhHHHHHhHHHHHHhc------CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCC--ch-----HH
Q 010185 287 CTLIPF--FQQFTGINVIMFYAPVLFKTI------GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGR--RV-----LF 351 (516)
Q Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--r~-----~~ 351 (516)
...+.. ...+..+.-...-...+.++. |++ -...+..+...+..++.+++..++-.|..| |. -.
T Consensus 270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kf 348 (493)
T PRK15462 270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKF 348 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Confidence 222211 111112222222222333321 332 235677788888888888887777666632 21 25
Q ss_pred HhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHH
Q 010185 352 LEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVST 431 (516)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 431 (516)
.++.++++++++.+....... ......+..+++...++.........|+..+.++++.|++.+|..+|.....
T Consensus 349 a~g~~~~g~~f~~l~~~~~~~-------~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~ 421 (493)
T PRK15462 349 ALGLGLMSAGFCILTLSARWS-------AMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLL 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------CCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 567777777777665533221 0001133444555555556667788899999999999999999999998664
Q ss_pred H-HHHHHHHHHHhHHH
Q 010185 432 N-MIFTFVVGQVFLSM 446 (516)
Q Consensus 432 ~-~~g~~i~~~~~~~~ 446 (516)
. .+++.++..+.+..
T Consensus 422 ~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 422 SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3 56666666665544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=175.47 Aligned_cols=366 Identities=15% Similarity=0.141 Sum_probs=243.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHH-HHHHHHHHHHHHHHHHhc-h-hhhHHHHHHHhhhhcccccccchh
Q 010185 79 SQLLTLFTSSLYLAALVASFFASVVTRMYGRKMS-MTVGGISFLIGAIINGAA-V-NIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 79 ~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
.+..++..++..+..++..|+.|.++|+-|+||. +.+..++..+++.+..+. + +++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999986554 455556666677777664 3 444455555666678888888999
Q ss_pred hhhhccCCcCcc--------------------------chhHHHHHHHHHHHHHHHHHHHhhhccccC-----CcchhHH
Q 010185 156 VYLSEMAPAKVR--------------------------GALNIGFQMAITIGILIANLVNYGTAKISG-----GWGWRVS 204 (516)
Q Consensus 156 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-----~~~wr~~ 204 (516)
+++.|..+++++ ++..+.-.....+|.++...+...+....+ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999988 899999888888998888777655432222 2346888
Q ss_pred HHHhHHHHHHHHHh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcch
Q 010185 205 LALAAVPAILMTVG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQ 283 (516)
Q Consensus 205 f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (516)
+.+.++.-++..+. .+++||.|+....+....-.. ..-++....++++. +.+.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------------~g~~~l~~t~k~~~---~~~~ 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------------FGFKRLWRTFKEIR---KLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------------HHHHHHHHHHHHHH---hChH
Confidence 88888776665554 455888773200000000000 00001111222222 2233
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc--hHHHhhhHHHHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR--VLFLEGGVQMFI 360 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~~~~~~~~~ 360 (516)
...+++.++....+...+......+.+ .+|++..+...+.....+..++|+++.+++.||+|.| +++.++..+..+
T Consensus 283 -~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 283 -LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333445555555666677777776666 6899999999999999999999999999999999998 676655554422
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
..+.-.+ ..... .....+.+. +....+..+.+..+..+...++.+|+.|+++.+...|++...+...++++|
T Consensus 362 i~~~g~~-G~~~~------~~g~~~~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 362 IPLYGLF-GFWPS------FFGLKSPWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHH-Hhhhc------ccCcccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 2222211 00000 000122222 333334444445555777788889999999999999999999999999999
Q ss_pred HHhHHHHhhcc-hhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 010185 441 QVFLSMLCHFK-FGLFFFFAGFVAVMTVFVFYMVPETRNV 479 (516)
Q Consensus 441 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (516)
.++|.+.+..+ ....+....+.++++++++..++.+|++
T Consensus 434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 434 LLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 99999999887 4555555566666666666666654443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=177.02 Aligned_cols=327 Identities=10% Similarity=0.024 Sum_probs=199.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh----hchh-HHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHhh
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRM----YGRK-MSMTVGGISFLIGAIINGAAVN------IAMLIIGRLML 143 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 143 (516)
+|+++..+|.+..+.-+.-++.-|+.|.++|| +||| +.++++.+..+++.+++-..++ ...+++.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 48999999999999999999999999999996 7875 5566687888888777655543 34566677777
Q ss_pred hhcccccccchhhhhhccCC-cCccchhHHHHHHHHHHHHHHHHHHHhhhcccc----CCcchhHHHHHhHHHHHHHHHh
Q 010185 144 GVGVGFANQVVPVYLSEMAP-AKVRGALNIGFQMAITIGILIANLVNYGTAKIS----GGWGWRVSLALAAVPAILMTVG 218 (516)
Q Consensus 144 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~----~~~~wr~~f~~~~~~~~~~~~~ 218 (516)
.++......+-.++..|..+ ++||++..++...+..+|..+++.+...+.... +..+|+....+.+++.+++..+
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999987 678999999999999998887766643322221 1247888877777776665544
Q ss_pred hcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhh
Q 010185 219 SFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFT 297 (516)
Q Consensus 219 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (516)
.+. .+|.++. + + ++.+.+...+..++++..+ .. +...+....
T Consensus 200 ~~~~~kE~~~~-----~--~--------------------------~~~~~~~~l~~~~~Nk~~~---~l-~~~~~~~~~ 242 (460)
T PRK11462 200 CFFTTKERVEA-----P--P--------------------------TTTSMREDLRDIWQNDQWR---IV-GLLTIFNIL 242 (460)
T ss_pred HHhcceeccCC-----C--c--------------------------cCCCHHHHHHHHhCChHHH---HH-HHHHHHHHH
Confidence 433 5553310 0 0 0000011222333322222 11 111222222
Q ss_pred hhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
..........++.+...-++...+.+.....+..+++.++++++.||+++|+....+..+..+..+++.+.
T Consensus 243 ~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--------- 313 (460)
T PRK11462 243 AVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--------- 313 (460)
T ss_pred HHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---------
Confidence 22222222333333322223344556677788889999999999999999988765444333333222221
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCc-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCA-------LEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
+ ...........++.+.+ .....++.+.+.+|... .+..|...+...+...+|..+++.+.|.+.+..
T Consensus 314 --~--~~~~~~~~~~~~l~g~~-~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 314 --P--MQASITMFVFIFVIGVL-HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred --c--hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 11121222222222222 22233444555556544 333355567777889999999999999988765
Q ss_pred ch
Q 010185 451 KF 452 (516)
Q Consensus 451 g~ 452 (516)
|+
T Consensus 389 Gy 390 (460)
T PRK11462 389 GY 390 (460)
T ss_pred CC
Confidence 43
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-21 Score=163.05 Aligned_cols=384 Identities=13% Similarity=0.124 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhH
Q 010185 22 FVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFAS 101 (516)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g 101 (516)
++.++++..|+..|-..++.-.-+ ..+.+| ..|.+++.++..++.+.|++...+.++++|
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~------alq~~f--------------k~d~ni~~akftLlYsvYSwPNvVlcffgG 100 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPG------ALQIDF--------------KLDSNIEYAKFTLLYSVYSWPNVVLCFFGG 100 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCch------hhhhhh--------------hcccccceeeeeeeeeeccCCCEEEeeecc
Confidence 445555556665565555543321 223333 556688999999999999999999999999
Q ss_pred HHHhh-hchhHHHHHHHHHHHHHHHHHH---hchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 102 VVTRM-YGRKMSMTVGGISFLIGAIING---AAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 102 ~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
++.|| +|-|..-++-+....++.++++ .++.+|.++++|++.|+|.-...++-..+..-||..|+.+.++|+....
T Consensus 101 flidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSv 180 (459)
T KOG4686|consen 101 FLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSV 180 (459)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHH
Confidence 99997 5877666666666667777765 4689999999999999999888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhcc----ccCCcchhHH-----HH-HhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhC
Q 010185 178 ITIGILIANLVNYGTAK----ISGGWGWRVS-----LA-LAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRG 247 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~~----~~~~~~wr~~-----f~-~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 247 (516)
.-+|+.+--.+-.++.+ ..+..+-... +- ......+++....-+ .++.+++.+.+..+
T Consensus 181 AR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~------------~D~rAerilh~e~g 248 (459)
T KOG4686|consen 181 ARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL------------SDDRAERILHLEEG 248 (459)
T ss_pred HHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHhhhcC
Confidence 88887654443222221 1111111100 00 001111111111000 01111111111000
Q ss_pred CCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHH
Q 010185 248 TPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVI 326 (516)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~ 326 (516)
. ..+.....+. +...++++....+.. ........+....|.+++ ++|+|+..++.+.+.
T Consensus 249 ~-----------------~Ge~pkLtdv--~~f~ppfw~~~iicv-~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~ 308 (459)
T KOG4686|consen 249 F-----------------LGEEPKLTDV--NTFYPPFWVLVIICV-LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILST 308 (459)
T ss_pred c-----------------ccCCcccccc--cccCccHHHHHHHHH-HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhh
Confidence 0 0000111111 122334444444433 333333444555565555 589999999999999
Q ss_pred HHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccc
Q 010185 327 TGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGP 406 (516)
Q Consensus 327 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
......+.+++.|.++||+|++...+.+.....+..-....+.. .+++... .+.+..+... ..
T Consensus 309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-------------lsPy~~m---~~lGLsysll-Ac 371 (459)
T KOG4686|consen 309 VYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF-------------LSPYTSM---TFLGLSYSLL-AC 371 (459)
T ss_pred hhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-------------ccHHHHH---HHHhhhHHHH-HH
Confidence 99999999999999999999987766554443333222222110 1222222 2222222211 12
Q ss_pred ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-h---hhHHHHHHHHHHHHHHHhhccc
Q 010185 407 LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-F---GLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
..|..++.+.|+++.|+++|+++.+.++|-++.|.+.|.+.|+.+ + ..++...+...+....+.+.+.
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 245556678899999999999999999999999999999998776 3 2344444444444444444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=179.67 Aligned_cols=326 Identities=12% Similarity=0.051 Sum_probs=194.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh----chhHHH-HHHHHHHHHHHHHHH-h----ch--hhhHHHHHHHh
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY----GRKMSM-TVGGISFLIGAIING-A----AV--NIAMLIIGRLM 142 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~r~l 142 (516)
+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++.. . ++ ..+.+++..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 488999999999999999999999999999996 776644 556665555444432 1 11 12334455577
Q ss_pred hhhcccccccchhhhhhccCCc-CccchhHHHHHHHH-----HHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHH
Q 010185 143 LGVGVGFANQVVPVYLSEMAPA-KVRGALNIGFQMAI-----TIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMT 216 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 216 (516)
.+++.+...++..++..+..++ ++|.+..++...+. .++..++|.++....... ..+|.....+.++++++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHHHHH
Confidence 7888888888888887777654 57888766665443 355566666654332110 0122222223333333333
Q ss_pred Hh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHH
Q 010185 217 VG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQ 295 (516)
Q Consensus 217 ~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (516)
++ ....||++.. + .++...+..++.+++++. +.. ..+..+..
T Consensus 198 ~~~~~~~~e~~~~---~------------------------------~~~~~~~~~~~~l~~n~~---f~~-~~~~~~~~ 240 (448)
T PRK09848 198 FICFKSTRENVVR---I------------------------------VAQPSLKISLQTLKRNRP---LFM-LCIGALCV 240 (448)
T ss_pred HHHHcCcEeccCC---C------------------------------ccCCCHHHHHHHHhCCch---HHH-HHHHHHHH
Confidence 22 2335665310 0 000000112334444332 222 22222333
Q ss_pred hhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcC
Q 010185 296 FTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
...........|++.++ +|.++...++......++.+++.++.+++.||+++|+.+.++..+..++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------ 314 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------ 314 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------
Confidence 33334455556766665 57666655555555567788889999999999999999998888777776655431
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchh-------hhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE-------IRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
+..+.+.......+...+.+. ..+...+..+|..+.+ .+|...|+.+....+|..+++.+.+.+.
T Consensus 315 -------~~~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 315 -------SVWSLPVALVALAIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred -------CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222222233333222 2345556666766543 4589999999999999999999999988
Q ss_pred hhcch
Q 010185 448 CHFKF 452 (516)
Q Consensus 448 ~~~g~ 452 (516)
+..|+
T Consensus 387 ~~~G~ 391 (448)
T PRK09848 387 GLSGY 391 (448)
T ss_pred HHcCC
Confidence 76553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=168.24 Aligned_cols=332 Identities=13% Similarity=0.113 Sum_probs=237.6
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh----hch-hHHHHHHHHHHHHHHHHHHhchh------hhHHHHHHHh
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRM----YGR-KMSMTVGGISFLIGAIINGAAVN------IAMLIIGRLM 142 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 142 (516)
.+|+++...|.+..+.-+--++.-|+.|.++|| +|| |+.++.+.+..++.+.++-.+++ ....++.-.+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 359999999999999999999999999999996 786 66777788999999999988874 4466677899
Q ss_pred hhhcccccccchhhhhhccCC-cCccchhHHHHHHHHHHHHHHHHHHHhhhcccc----CCcchhHHHHHhHHHHHHHHH
Q 010185 143 LGVGVGFANQVVPVYLSEMAP-AKVRGALNIGFQMAITIGILIANLVNYGTAKIS----GGWGWRVSLALAAVPAILMTV 217 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~----~~~~wr~~f~~~~~~~~~~~~ 217 (516)
.+++......+-.++..|+.+ ++||.+..++...+.++|.++...+...+.... ...||+...++.++++++..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 578999999999999999766655543333222 245899988888888887776
Q ss_pred hhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhc-cCCcchHHHHHHHHHHHH
Q 010185 218 GSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILR-GRYRPQLTMCTLIPFFQQ 295 (516)
Q Consensus 218 ~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (516)
..++ .+|.+.. ....++..+.++++.+. ..++++ +...++..++.
T Consensus 202 ~~~~~v~ER~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~Nrp-~~~~l~~~l~~ 248 (467)
T COG2211 202 FCFFNVKERVVE--------------------------------TQPTKTGVKLKLKDSFLLIFKNRP-LLLLLLMNLLL 248 (467)
T ss_pred HHHHHhhcccCc--------------------------------cccCcccccccHHHHHHHHHccch-HHHHHHHHHHH
Confidence 6665 7776510 00000112233332221 112233 33333344555
Q ss_pred hhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcC
Q 010185 296 FTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
..+.+.......++.+. +|.+.............+.+++.++..++.+|+|+|+++..+.++..++.+++.+..
T Consensus 249 ~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----- 323 (467)
T COG2211 249 FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----- 323 (467)
T ss_pred HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 55555666666666654 577777777788888888888899999999999999999999888888888877641
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccC-------chhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVC-------ALEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
.++.+..++..++...+. ....++.+++++|.. ..+..|...|...++.-+|.+++..+.|++.
T Consensus 324 --------~~~~~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 324 --------AGSVVLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred --------CcchHHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333323333333 344678888888864 3345588899999999999999999999999
Q ss_pred hhcch
Q 010185 448 CHFKF 452 (516)
Q Consensus 448 ~~~g~ 452 (516)
+..|+
T Consensus 395 ~~~Gy 399 (467)
T COG2211 395 GAIGY 399 (467)
T ss_pred HHcCC
Confidence 87764
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=164.75 Aligned_cols=281 Identities=10% Similarity=0.034 Sum_probs=190.8
Q ss_pred HhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccC----------
Q 010185 128 GAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISG---------- 197 (516)
Q Consensus 128 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~---------- 197 (516)
+...+++.++++-++.|.|.+...+..+.++++..+++++.+.+++.+..+++|..++|.+++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3557899999999999999999999999999999999999999999999999999999999887653211
Q ss_pred ---CcchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCch
Q 010185 198 ---GWGWRVSLALAAVPAILMTVGSFF--LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPW 272 (516)
Q Consensus 198 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (516)
..+|+++|++.+.+.++..+.+.+ +||.++ ++.++ ..+ + +....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~------------------------~~~-~-~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVAR------------------------VSS-G-DTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccc------------------------ccc-c-cccch
Confidence 137999999766665544444333 555321 00000 000 0 00001
Q ss_pred hhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh---cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCch
Q 010185 273 TNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT---IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRV 349 (516)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (516)
++.++ ++. .+...+..+.+.........|.+.++++ +|+++.+++...+....+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~---~~~-~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQ---FTH-LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHh---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 11222 222 3334455555555566777788888764 4899999999999999999999999999999999998
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHH
Q 010185 350 LFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINV 429 (516)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 429 (516)
.+.++..+..++.++.... +.........+.+.+ .....|...+...+..|+ ..+++.++.
T Consensus 210 ~l~~~~~l~~~~~~l~~~~----------------~~~~~~~~~~l~g~~-~s~i~P~~~s~a~~~~~~-~~~~asai~- 270 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT----------------HGYVAMWFVLALGLF-NSIMFPTIFSLALNALGR-HTSQGSGIL- 270 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhhhhHHHH-
Confidence 8877766666555333321 111222233333333 333456656666677774 456777774
Q ss_pred HHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHH
Q 010185 430 STNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFV 462 (516)
Q Consensus 430 ~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~ 462 (516)
.+..+|+++.|++.|.+.|..+....+.+...+
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677899999999999999988865444433333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=168.35 Aligned_cols=352 Identities=15% Similarity=0.127 Sum_probs=218.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHH--HHHHHHH-HHHHhc----hhhh-HHHHHHHhhhhcc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGG--ISFLIGA-IINGAA----VNIA-MLIIGRLMLGVGV 147 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~--~~~~~~~-~~~~~~----~~~~-~l~~~r~l~G~~~ 147 (516)
|++.+++|.+.++..+...+.+|+.|.++||+|.||-++..+ ++...+. +...+. .|.+ ..+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999665444332 2222222 222222 2332 3334444555555
Q ss_pred cccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 148 GFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
.+..|+.-+++.++. ++.+.-.|-..+..++|.+++..++|.+... +-+..||+....+++..++.++ -|+.+
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 556666666665554 3346667778888899999999998877654 4567888777666655554444 33333
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 227 NSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
+....++. +..++++.+.++..+..+.++.+....+.. .....+..+-...
T Consensus 193 ~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~-g~~~~Y~vfdqqf 243 (412)
T PF01306_consen 193 PQAEVADA----------------------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVI-GVAAIYDVFDQQF 243 (412)
T ss_dssp SSS-SSTT----------------------------SSS------HHHHHHHTTSHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hhhhhhcc----------------------------cccCCCCCcHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11000000 001112223444444444555555443322 2333344444344
Q ss_pred HHHHHhc----CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 307 PVLFKTI----GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 307 ~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
+.+...+ +.+....|...+...+..++.-.+..++.+|+|.|+.++++..++.+=....++.
T Consensus 244 ~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------------- 309 (412)
T PF01306_consen 244 PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------------- 309 (412)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--------------
Confidence 5444443 3344567888899999999999999999999999999999999988888887763
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHhhcch-hhHHHHHH
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAIN-VSTNMIFTFVVGQVFLSMLCHFKF-GLFFFFAG 460 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~~~~~~~~g~-~~~~~~~~ 460 (516)
++.+.....=.+...-+.... ....-|+++.+|++..++.+.+. +...+++.++.+.+.|.++|+.|+ ..+++.+.
T Consensus 310 -~~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~ 387 (412)
T PF01306_consen 310 -TNPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL 387 (412)
T ss_dssp --SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence 234444443344444433332 23346777999999999999885 578899999999999999999996 46677777
Q ss_pred HHHHHHHHHhhcccCCCC
Q 010185 461 FVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (516)
+.....++..+.+++.++
T Consensus 388 iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 388 IVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHheeeecCCCc
Confidence 776677777776665444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-18 Score=155.68 Aligned_cols=357 Identities=12% Similarity=0.081 Sum_probs=245.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhch-hHHHHHHHHHHHHHHHHHHhchh--h-hHHHHHHHhhhhcccccccc
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGR-KMSMTVGGISFLIGAIINGAAVN--I-AMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~ 153 (516)
+.+..+...++..+..++.+|+.|.++|+.|+ |+.+-....+..++..+..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 55778899999999999999999999999995 55666667777777777777755 4 45556668889999999999
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccc---------------cCCcchhHHHHHhHHHHHHHHHh
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKI---------------SGGWGWRVSLALAAVPAILMTVG 218 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~---------------~~~~~wr~~f~~~~~~~~~~~~~ 218 (516)
..+++.+..++++-++..+.-.....+|+.+.-.+....... .+...=|..+.+.++.-++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887777666667766655443111100 12235788888888877766554
Q ss_pred hcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhh
Q 010185 219 SFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFT 297 (516)
Q Consensus 219 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (516)
.++ .++.++-. .+..+ .-...-++.+.+++++.+++ ....+++..+...-
T Consensus 216 m~~~v~~~~~~~---~~~~~----------------------~l~~g~k~L~~t~k~i~~~~----~i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPT----------------------ALRNGFKELKSTFKEIRGRK----NLVLFLIARFFYID 266 (438)
T ss_pred HHhccccccccc---ccchH----------------------HHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHh
Confidence 444 66654200 00000 00011112233444444433 23334444555555
Q ss_pred hhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 298 GINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
+.+....+...+-. ++|++..+..++.....+..++|+++.|++.||+|.|+++..+.+...+..+...+.
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 66677777777766 789999999999999999999999999999999999988888777666555554442
Q ss_pred CCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch-hhH
Q 010185 377 GEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF-GLF 455 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~-~~~ 455 (516)
..........++.+.+-.+.....-++..++.|+++.++..|+++..++..++.+|.+.+.+.+.++. ..-
T Consensus 339 --------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 339 --------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred --------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 11122222223333333344567778889999999999999999999999999999999999988873 444
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC
Q 010185 456 FFFAGFVAVMTVFVFYMVPETRNV 479 (516)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~ 479 (516)
+....+..+.+++.+..+|.++++
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~~~~ 434 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVPGRR 434 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCCCCc
Confidence 445555556666666666655333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=160.89 Aligned_cols=404 Identities=13% Similarity=0.168 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+..|..+.++.+-+|+.+.+.+++.+. +.++.++.++ +-+.+..|++.++..++.+++++++
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s--~wpYl~~lD~----------------~A~~~ffG~viaa~slg~~i~~liF 91 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTS--MWPYLQKLDP----------------TATATFFGLVIAASSLGHAIFSLIF 91 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEee--cchhhhhcCC----------------CCCcchhhHHHHHHHHHHHhcchhh
Confidence 334444555666677888888887544 3667766532 4588899999999999999999999
Q ss_pred HHHHhhhch-hHHHHHHHHHHHHHHHHH-Hhc---h-hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHH
Q 010185 101 SVVTRMYGR-KMSMTVGGISFLIGAIIN-GAA---V-NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGF 174 (516)
Q Consensus 101 g~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 174 (516)
|+++.|.+. |+.++.|.++..+++++. ++. + ..+.++++|++.|+|.+ ......+|+++-...++|.|+++..
T Consensus 92 ~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~ 170 (488)
T KOG2325|consen 92 GIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAAT 170 (488)
T ss_pred cccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHh
Confidence 999999997 888999999999999999 433 3 67899999999999987 5667889999998889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCC-------c---chhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHH
Q 010185 175 QMAITIGILIANLVNYGTAKISGG-------W---GWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQ 243 (516)
Q Consensus 175 ~~~~~~G~~i~~~i~~~~~~~~~~-------~---~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~ 243 (516)
..+..+|.++||.++..+..+.+. . -+..+-|+.+++.++.++...+ ++|.+|.-..++..++
T Consensus 171 ~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------ 244 (488)
T KOG2325|consen 171 SGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------ 244 (488)
T ss_pred hhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------
Confidence 999999999999998887765432 1 1335667777777776655444 7776632111100000
Q ss_pred HHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHH-HHHhHHHHHHhcCCCchhHHH
Q 010185 244 KIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINV-IMFYAPVLFKTIGFGAEASLM 322 (516)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~~~ 322 (516)
++ + +....+....+..+...+.+.+..+.....+.. -....+.....++++.+++..
T Consensus 245 ------------~~---~-------~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~ 302 (488)
T KOG2325|consen 245 ------------EE---E-------KSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVL 302 (488)
T ss_pred ------------hh---h-------ccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHH
Confidence 00 0 000001111122222233333333333333333 344455555566776665533
Q ss_pred H----HHHHHHHHHHHhHhHhhhh-cccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC---C---CCCcccchh-----
Q 010185 323 S----AVITGVVNVVATLVSVFSV-DKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR---G---EGTLTKFDA----- 386 (516)
Q Consensus 323 ~----~~~~~~~~~~~~~~~g~l~-d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~----- 386 (516)
. .++.++....-.+...... .++.+|+.+..+.+....+..+.......+.... . .+.......
T Consensus 303 ~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~ 382 (488)
T KOG2325|consen 303 YNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTT 382 (488)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccC
Confidence 3 3333333333333333322 2333455554443333333322221111111000 0 000000110
Q ss_pred --HHHHHHHHHHHHhhhcCc---ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHH
Q 010185 387 --DFVLFLICAYVAAFAWSW---GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGF 461 (516)
Q Consensus 387 --~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (516)
.........+...++.+. .....+.-+|+..++.+++..++.......+..++|.+........|+...+.+...
T Consensus 383 ~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~ 462 (488)
T KOG2325|consen 383 TAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLC 462 (488)
T ss_pred cccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHH
Confidence 011111112222222221 112334456888889999999999999999999999999999999898777776666
Q ss_pred HHHHHHHHhh
Q 010185 462 VAVMTVFVFY 471 (516)
Q Consensus 462 ~~~~~~~~~~ 471 (516)
.+++....+.
T Consensus 463 ~~l~~~~l~~ 472 (488)
T KOG2325|consen 463 LLLVVAALWI 472 (488)
T ss_pred HHHHHHHHHH
Confidence 6555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=149.91 Aligned_cols=358 Identities=18% Similarity=0.132 Sum_probs=227.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhhhcccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 151 (516)
+|+++++..-+.+.|.--.-+..+++||++||+ |+|+++.+|.+++++|.++.+.+. +...++++-++.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 689999999999999888889999999999997 999999999999999999999984 78899999999999999999
Q ss_pred cchhhhhhccCCcC--ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC-----
Q 010185 152 QVVPVYLSEMAPAK--VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD----- 224 (516)
Q Consensus 152 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e----- 224 (516)
+...++++|.+|++ +|-..++++.++.++|++++|++.+.+... .||+..|.+.++-..+.++..++.+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 99999999999865 467889999999999999999998777754 48999999888776665555433321
Q ss_pred ----ChHHHHhcCCHHHHHHHHHHHhCCC----CcHHHHHHHHHHH----HH-hhhccCchhhhhccCCcchHH------
Q 010185 225 ----TPNSILERGHVDEAKKMLQKIRGTP----NVDEEFQDLYDAS----EA-AKQVHHPWTNILRGRYRPQLT------ 285 (516)
Q Consensus 225 ----~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~------ 285 (516)
.|..+..+................. ...+......... .. --.+...+.+.. ..++|.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~er~r~~~~~~Lf 290 (498)
T COG3104 213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF--DERRRLLAAIPLF 290 (498)
T ss_pred CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH--HHHHHHHHHHHHH
Confidence 1111111111111111100000000 0000000000000 00 000000111100 0112222
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHh--cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc-------hHHHhhhH
Q 010185 286 MCTLIPFFQQFTGINVIMFYAPVLFKT--IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR-------VLFLEGGV 356 (516)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-------~~~~~~~~ 356 (516)
+...+.+....-....+..|.....++ +|++ -...+..+...+..++..++..++..|.+++ .-+.++..
T Consensus 291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~ 369 (498)
T COG3104 291 LFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLI 369 (498)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHH
Confidence 222222222222233334444333332 2322 2335677888888888888888877774433 22345555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHH
Q 010185 357 QMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFT 436 (516)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 436 (516)
++..+++++......... .+...+.++++....+.........|+..+++....|++..+..++........+.
T Consensus 370 l~g~~fl~l~~~~~~~~~------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~ 443 (498)
T COG3104 370 LAGLGFLILLLAGIWFGG------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQ 443 (498)
T ss_pred HHHHHHHHHHHHHHhhcC------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 666666665554222111 12335556666667777777888889999999999999999999999888888888
Q ss_pred HHHHHHhH
Q 010185 437 FVVGQVFL 444 (516)
Q Consensus 437 ~i~~~~~~ 444 (516)
.++..+.+
T Consensus 444 ~l~g~va~ 451 (498)
T COG3104 444 TLGGQVAG 451 (498)
T ss_pred Hhhceecc
Confidence 88877776
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=153.98 Aligned_cols=308 Identities=15% Similarity=0.151 Sum_probs=211.9
Q ss_pred HHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHh
Q 010185 26 TCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTR 105 (516)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d 105 (516)
.+++.++..+..++..+.+.... ..+. +.|+++.++.|++.+.+-++..+...+..+..-
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~I--ttiE------------------rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~ 157 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVI--TTIE------------------RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGS 157 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh--hhhh------------------hhcCCCCCcceeEeeecccchhhhhHhHHHhcc
Confidence 34444555566666555544333 2333 334899999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhc--------------------h---------------------------h----hh
Q 010185 106 MYGRKMSMTVGGISFLIGAIINGAA--------------------V---------------------------N----IA 134 (516)
Q Consensus 106 r~Grr~~~~~~~~~~~~~~~~~~~~--------------------~---------------------------~----~~ 134 (516)
|.-|-+.+-+|+++++++++++++- + + ++
T Consensus 158 r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (735)
T KOG3626|consen 158 RGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPF 237 (735)
T ss_pred ccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhH
Confidence 9999999999999999999999871 0 0 22
Q ss_pred -HHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCc--------------
Q 010185 135 -MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGW-------------- 199 (516)
Q Consensus 135 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~-------------- 199 (516)
.++++.++.|+|....++...+|+-|...+++-+..+|+......+|.++|-++|+++..+...+
T Consensus 238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW 317 (735)
T KOG3626|consen 238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW 317 (735)
T ss_pred HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence 67788999999999999999999999999999999999999999999999999999876542211
Q ss_pred --chhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhc
Q 010185 200 --GWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILR 277 (516)
Q Consensus 200 --~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (516)
-|..-|++.+.+.++..+.++++|.+.+...++ .++ ++.+..++.+...+......+.-++-+... +
T Consensus 318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~----~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~----~ 386 (735)
T KOG3626|consen 318 IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRA----RDLHVLKTESGGAKSDKTFGKKIKDFPKSI----K 386 (735)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chh----hhhcccccccccccCCcchhhhHHHHHHHH----H
Confidence 377778888888888777777777654211110 000 000000000000000000000001111122 2
Q ss_pred cCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHH-HHHHHhHhHhhhhcccCC--chHHHh
Q 010185 278 GRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGV-VNVVATLVSVFSVDKFGR--RVLFLE 353 (516)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--r~~~~~ 353 (516)
+....+++....+........+..+..|+|.|++. +|.++..+..+....++ +..+|.+++|+++.|+.. |....+
T Consensus 387 ~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~ 466 (735)
T KOG3626|consen 387 RLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF 466 (735)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence 33344567777777777888888999999988875 79999999888866655 556778889999999854 455555
Q ss_pred hhHHHHHHHHH
Q 010185 354 GGVQMFICQCL 364 (516)
Q Consensus 354 ~~~~~~~~~~~ 364 (516)
..+...++++.
T Consensus 467 ~~~~~~l~l~~ 477 (735)
T KOG3626|consen 467 VIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHHHH
Confidence 55544444444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-15 Score=137.03 Aligned_cols=330 Identities=12% Similarity=0.053 Sum_probs=215.2
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc-----hhHHHHH-HHHHHHHHHHHHHhc-----h-------hh--
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYG-----RKMSMTV-GGISFLIGAIINGAA-----V-------NI-- 133 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~~-- 133 (516)
|++++....+.+.+...+.. ...+.+|+.||+.+ ||..+++ |.++...+..+.+++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 45889999999999888776 46899999999999 7765555 666666666665553 2 22
Q ss_pred h--HHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhH--HHHHhH
Q 010185 134 A--MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRV--SLALAA 209 (516)
Q Consensus 134 ~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~--~f~~~~ 209 (516)
+ ...+.-.+.|+|.+...++..+++.|..|+++|+++.++...+.-+|.+++..+.+.+.+-.+ .-|. ++...+
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL~~v~~~~a 165 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS--PERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHHHH
Confidence 2 344556788999999999999999999999999999999999999999999988665543322 2222 222333
Q ss_pred HHHHHHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHH
Q 010185 210 VPAILMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTL 289 (516)
Q Consensus 210 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (516)
++.++..++..+=.|.+.....+ ...+++...+..++++..++..++++...+
T Consensus 166 ~i~~~l~~ia~wg~E~r~~~~~~---------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPRRSRRAA---------------------------AAERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHhcccCCccccc---------------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 33333333333322322000000 000011111234556666666666666655
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhc-ccCCchHHHhhhHHHHHHHHHHHHH
Q 010185 290 IPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVD-KFGRRVLFLEGGVQMFICQCLVGIM 368 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~~~~~~~~~~~~~ 368 (516)
+..+..+.. -...-||=-+-+|++..++..++...+.+.+++-.+.+++.. |.++++...++....++++.++...
T Consensus 219 l~t~a~~~Q---D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 219 LGTLAFFMQ---DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHhh---HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 544322211 111224434456999999999999999999999999997766 6777787778888877777776654
Q ss_pred HHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 010185 369 LALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC 448 (516)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~ 448 (516)
... .+.+.......+++.+.+...... .+...++.+++..|..+|.....+.+...++..+.|.+.|
T Consensus 296 ~~~------------~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 296 GPL------------GSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred Hhc------------ccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 233344444444433333322222 2333477788889999999999999999999988888876
Q ss_pred h
Q 010185 449 H 449 (516)
Q Consensus 449 ~ 449 (516)
.
T Consensus 363 ~ 363 (403)
T PF03209_consen 363 L 363 (403)
T ss_pred H
Confidence 4
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-18 Score=173.32 Aligned_cols=370 Identities=14% Similarity=0.134 Sum_probs=3.0
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc------------h--------
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA------------V-------- 131 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------~-------- 131 (516)
++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++++++++++++= .
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 44449999999999999999999999999999999888899999999999999998761 0
Q ss_pred ------------------------------hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHH
Q 010185 132 ------------------------------NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIG 181 (516)
Q Consensus 132 ------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 181 (516)
-+..+++++++.|+|....++...+|+-|..++++-+..+|+..+...+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 13578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccC---------------Cc----chhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCCHHHHHHHH
Q 010185 182 ILIANLVNYGTAKISG---------------GW----GWRVSLALAAVPAILMTVGSFFLPDTPNSILERGHVDEAKKML 242 (516)
Q Consensus 182 ~~i~~~i~~~~~~~~~---------------~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 242 (516)
.++|.++|+.+....- +. .|..-|++.+.+.++..+..+++|+.-+.. .+.++..+..
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~---~~~~~~~~~~ 266 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT---SERQEEKESS 266 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc---ccccchhhhh
Confidence 9999999887654311 01 266666667776666666666666543211 0000000000
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHhhhccCchhhh---hccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCch
Q 010185 243 QKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNI---LRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAE 318 (516)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~ 318 (516)
++. .++ .+.++.. +.+..+......+++ +++..+++.+....+...........+..|.|.++|. ++.++.
T Consensus 267 ~~~--~~~--~~~~~~~-~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas 341 (539)
T PF03137_consen 267 ERK--EED--SDKDSFK-DPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSAS 341 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcc--hhh--hhhhccc-ccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 000 000 0000000 000000001112222 2334445566666676777777778888999988875 799999
Q ss_pred hHHHHHHHHHH-HHHHHhHhHhhhhcccC--CchHHHhhhHHHHHHHHHHHHHHHHhcC---------CC----------
Q 010185 319 ASLMSAVITGV-VNVVATLVSVFSVDKFG--RRVLFLEGGVQMFICQCLVGIMLALKFG---------LR---------- 376 (516)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------- 376 (516)
++.++.....+ +..+|.+++|++.+|++ .|.......+...++.++........-+ .+
T Consensus 342 ~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~ 421 (539)
T PF03137_consen 342 QASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSC 421 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCC
Confidence 88888766655 66788899999999985 3555555554444444442222211100 00
Q ss_pred -----------------CCCCcccc--hhH-HHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHH-HH
Q 010185 377 -----------------GEGTLTKF--DAD-FVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNM-IF 435 (516)
Q Consensus 377 -----------------~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g 435 (516)
..+..+.. ... ..++..++.....+....|...... ..+|+++|+.+.|+...+.+ +|
T Consensus 422 ~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~L-R~V~~~~rs~AlGv~~~~~rllg 500 (539)
T PF03137_consen 422 NLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITL-RCVPPEQRSFALGVQWLIIRLLG 500 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeee-ccCChhhcchhhhHHHHHHHhhc
Confidence 00011111 111 1222222222333333344444444 88999999999999987655 67
Q ss_pred HHHHHHHhHHHHhhc
Q 010185 436 TFVVGQVFLSMLCHF 450 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~ 450 (516)
.+-+|.++|.+.|..
T Consensus 501 ~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 501 FIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------
T ss_pred CcchHHHHhHHHhhh
Confidence 788999999998863
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=157.58 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=132.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHH---HHhchhhhHHHHHHHhhhhccccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAII---NGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888889999999999999999999999998887654443332 22345677888899999988777777
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhc
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILER 232 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 232 (516)
....++.|.+|++.|+++++.......++..++|.+.+.+.+.. .+|+.++++..+++++..+..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 77888899999999999999754444555677777766655332 2578777777777777766667789999998765
Q ss_pred -----CCHHHHHHHHHHHhC
Q 010185 233 -----GHVDEAKKMLQKIRG 247 (516)
Q Consensus 233 -----~~~~~~~~~~~~~~~ 247 (516)
++.+|+++.+.++++
T Consensus 440 ~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccccchhhHHHHhhcccc
Confidence 888999999988873
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=141.98 Aligned_cols=319 Identities=15% Similarity=0.154 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhc--ccccccchhhhhhccCCcC
Q 010185 88 SLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVG--VGFANQVVPVYLSEMAPAK 165 (516)
Q Consensus 88 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 165 (516)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +| +++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34567788999999999999999999999998888888877766 33 333 44433 3456677889999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHH
Q 010185 166 VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQK 244 (516)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~ 244 (516)
+|....++....+..+..++|.+++...... |.-.+|.+..+..++..+..++ +||+-..-.+. ++ ....
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~~---~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLLYMLLFLPESLQEKERS---DA---TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHhhccccccCccccc---cc---cccc
Confidence 9999999999999999999999998887664 7778888888888777665544 88875111000 00 0000
Q ss_pred HhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHH
Q 010185 245 IRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMS 323 (516)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~ 323 (516)
.... ..........++...+....|..+......++..........-..+++++ .++++..+.+.+
T Consensus 216 ~~~~-------------~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 216 LTPG-------------SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCCC-------------cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000 00000011122222222223333333333232222111111101122333 369999999989
Q ss_pred HHHHHHHHHHHhHhHh-hhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhc
Q 010185 324 AVITGVVNVVATLVSV-FSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAW 402 (516)
Q Consensus 324 ~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (516)
.+..+....++.++.. .+...++.|+....+.....+.....++. +..|. .. .......++.
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---------------~~~w~-~~-~~~v~~~~~~ 345 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---------------TETWM-MF-AAGVVVALAG 345 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---------------ccchh-hh-HHHHHHHhhc
Confidence 9999999999988877 67777898888888888888888887773 12222 22 2222333344
Q ss_pred CcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 403 SWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 403 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
...|...+..+...+++.+|++.++...+..+.+.++|.+.+.++..+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 445666777778888999999999999999999999999999886543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-15 Score=122.27 Aligned_cols=136 Identities=26% Similarity=0.412 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcC
Q 010185 86 TSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAK 165 (516)
Q Consensus 86 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 165 (516)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCC
Q 010185 166 VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPD 224 (516)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 224 (516)
+|++..++......+|..+++.+++.+.+. .+|++.+++.++..++..+...+ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999998877643 48999999888777766655444 554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=132.85 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
.....+..+...........+.|.+.+++|.+..+.++..+...++.+++.++.|+++||+|||+.+..+..+..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333334444444556667788888899999999999999999999999999999999999999999888877777666
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... .+.+... ......+.......+....++.|.+|++.|+++.++.+....+|..+++.+.+
T Consensus 99 ~~~~---------------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 99 CALA---------------TNVTQLL-ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHc---------------cchHHHH-HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 5542 1222222 22222222223345666778889999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHH-HHHHHHHHHHhhcccCCC
Q 010185 445 SMLCHFKFGLFFFFA-GFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 445 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 477 (516)
.+.+..++...+.+. .+..+...+...+.+++.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999888876555444 344455555555566543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-12 Score=114.08 Aligned_cols=234 Identities=14% Similarity=0.163 Sum_probs=153.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|++..|++.+....+....+..++.|.++||+|||+.-++.+++++++++ +-..++++.++++|++.|++.+..+.+--
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 45679999999999999999998888777
Q ss_pred hhh-hccC----CcCccchhHHHHH-HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHH
Q 010185 156 VYL-SEMA----PAKVRGALNIGFQ-MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNS 228 (516)
Q Consensus 156 ~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~ 228 (516)
+++ .|.- |++..+..++... ..+++-.+++.+++-.+.+..+ .|-..+|....+..++..++... -+|.+..
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 664 3332 2222233333222 2233333444444444433221 13467888777776666554433 4554310
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
..++ . +..+..+..++.+.+ +++++....+..+.-...+.....|.|.
T Consensus 223 ~~~~---~--------------------------~~~~~~~~a~~~i~~---d~ril~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 223 TSSS---S--------------------------SLSGSFREAWRAILS---DPRILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred cccc---c--------------------------chHHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHheeeeece
Confidence 0000 0 000000112233332 4666777777777777777777778887
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc
Q 010185 309 LFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF 345 (516)
Q Consensus 309 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (516)
+..+ + .....|++++.+.++.++|+.+..++..+-
T Consensus 271 L~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 271 LDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred ecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7521 1 233468999999999999999987655543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=132.68 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=127.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch----hhhHHHHHHHhhhhcccccccc
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV----NIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
+..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999877776642 3466788899999999988899
Q ss_pred hhhhhhccCCcCccchhHHHHH-HHHHHHHHHHHHHHhhhccccCC---cchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQ-MAITIGILIANLVNYGTAKISGG---WGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
...++.|++|+++|++++++.+ ...++|.++||++++.+.+..+. +||+..|.+.+++.++..++..+ ++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999997 67899999999999988776543 57999999888887776655444 77764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=132.85 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=126.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+.+..+.+++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 156 VYLSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
.++.|.+|++.|+...+. ++....+|.++++.+++.+.+.. |||..|.+.+++.++..++.++ +++.|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999988877655 66778899999999988877543 8999999888777665544443 55544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-12 Score=124.93 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=133.5
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHH
Q 010185 281 RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360 (516)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 360 (516)
+++......+.++.............|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 34455555565666566666677778888889999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
+.++..+. .+...+...-.+.+.......+....++.|.+|+++|+++.++.+....+|..+++
T Consensus 86 ~~~~~~~~----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 149 (412)
T TIGR02332 86 ASTATMFA----------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGL 149 (412)
T ss_pred HHHHHHHh----------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777652 22222223223333333334566667778999999999999999999999999999
Q ss_pred HHhHHHHh------hcchhhHHHHHH-HHHHHHHHHhhcccCCCC
Q 010185 441 QVFLSMLC------HFKFGLFFFFAG-FVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 441 ~~~~~~~~------~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 478 (516)
.+.+.+.+ ..+|...+.+.+ ...+...+.+++++|+++
T Consensus 150 ~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 150 ILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 99998874 246765555544 334444555566677653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=124.82 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=122.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......+.++.+.+++.|++.+++.+...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999998888888889999999999999999988887776666655556678888888999999888887777777
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD 224 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 224 (516)
.+..|.+|+ +|++++++++....+|..+++.+++.+.+. ++|+..|++.+++.++..+..+++||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999885 599999999999999999999999887754 38999999888888877777666665
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=125.71 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=131.6
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHH
Q 010185 281 RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360 (516)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 360 (516)
.++.+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555565666666666777778888888999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
+.++.... ++.+.......+.+.+ .....+....++.|.+|+++|+++.++.+....+|..+++
T Consensus 90 ~~~~~~~~---------------~~~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 153 (405)
T TIGR00891 90 GTLACGFA---------------PGYITMFIARLVIGIG-MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAA 153 (405)
T ss_pred HHHHHHHh---------------ccHHHHHHHHHHHHhh-hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 77666542 1222222222222222 2233455567778999999999999999999999999999
Q ss_pred HHhHHHHhhcc--hhhHHHHHHHHHHHHHHHhhcccCC
Q 010185 441 QVFLSMLCHFK--FGLFFFFAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 441 ~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (516)
.+.+.+.+..+ |...+.+.++..+...+.....||+
T Consensus 154 ~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 154 QVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99998887765 6655555555555444444445554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-12 Score=129.42 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=121.5
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
..+....|.+.+++|.+..+.+++.+...++.+++.++.|+++||+|||+.++++.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445667788888899999999999999999999999999999999999999998887777776666542
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc---------
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF--------- 450 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~--------- 450 (516)
.+.+..++.-++.+.+. .+..+....++.|.+|++.|+..+++.+....+|.++++.+...+....
T Consensus 253 ----~s~~~llv~R~l~G~g~-g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 253 ----QGYGFFLFCRLLSGFGI-GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred ----hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 12222333333333332 3335777888899999999999999999999999999988776665433
Q ss_pred ----chhhHHHHHHHHHHHHHHHhhcccCCC
Q 010185 451 ----KFGLFFFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 451 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
+|..++.+.++..+..++..+++||..
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 345566666666666666667778763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-13 Score=122.04 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=140.3
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHH
Q 010185 281 RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360 (516)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 360 (516)
+.+++....+.+......--.+..-.|.+.++.++|..+.|++.+...+..-++.++.|.++||.+.|..+..++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 34455555555555555555667778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
..+++++. ++.+...++..+-+.+-+.++.|.. ..+..-+|++.||+..++.|++.++|+.+.|
T Consensus 107 ~nil~Gfs---------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 107 VNILFGFS---------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHhhh---------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 99999884 2334444444455555555655554 4445899999999999999999999999999
Q ss_pred HHh--HHHHhhcchhhHHHH-HHHHHHHHHHHhhcccCCCC
Q 010185 441 QVF--LSMLCHFKFGLFFFF-AGFVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 441 ~~~--~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 478 (516)
++. +.+..+.++...+++ ++++++++++.++..+++.+
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999 888888887655555 55555566666666655443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=126.83 Aligned_cols=347 Identities=14% Similarity=0.135 Sum_probs=202.4
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh---c--hhHHHHHHHHHHHHHHHHHHhc----hhhhHHHHHHHh
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY---G--RKMSMTVGGISFLIGAIINGAA----VNIAMLIIGRLM 142 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~---G--rr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l 142 (516)
++++|+++++.....++..+... .-+++|.++|.+ | ||+-++++.++..++.+..+.. .+.....+.-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 34459999999999988888765 457899999986 2 5566666777776666655553 356677777788
Q ss_pred hhhcccccccchhhhhhccCC--cCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc
Q 010185 143 LGVGVGFANQVVPVYLSEMAP--AKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF 220 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 220 (516)
..+|.+....++-+++.|... ++.|+...+.......+|.+++..++|.+.+.. ++|..|.+.+++..+..+..+
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeEEehHHHHHHHHHHHHHH
Confidence 899999999999999999984 334778888888899999999999988776543 788888888777666655554
Q ss_pred c-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHH-HHHHHHhhh
Q 010185 221 F-LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTL-IPFFQQFTG 298 (516)
Q Consensus 221 ~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (516)
+ .+|.+. .++ ++.... . .++.+..... . +...+++++....+.++.... +.++.....
T Consensus 173 ~~~~e~~~--~~~---~~~~~~----~-~~~~~~~~~~-------~---~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 232 (433)
T PF03092_consen 173 FLLEERKV--RPA---DEVFSF----G-KEEVPCLFGS-------F---REQLSELWRALQQRAIWQPILFFIFFFNLPP 232 (433)
T ss_pred Hhhhhccc--ccc---chhhcc----c-ccccchhhHH-------H---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4 444210 000 000000 0 0000000000 0 111111111111222222222 111111110
Q ss_pred h--HH-HHHhHHHHHHhcC---CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHh
Q 010185 299 I--NV-IMFYAPVLFKTIG---FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372 (516)
Q Consensus 299 ~--~~-~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 372 (516)
. .. ..++. .+..+ +++...+....+..++.++|..+..+...+..-|+++....++..+..+.-..+. .
T Consensus 233 ~~~~a~~fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~- 307 (433)
T PF03092_consen 233 SISSASSFYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-T- 307 (433)
T ss_pred CCCCccEEEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-E-
Confidence 0 01 11111 12234 7888888888777888888888887776666767776655444333322211110 0
Q ss_pred cCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
.++-.-+.++. +..+.--.+........+.|.. ...+|+.|+...|+.+++...+.++|..++..+...+.+..+
T Consensus 308 -~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 308 -RWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred -EEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00000011111 2222222233333333334443 344699999999999999999999999999999988877654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-12 Score=122.33 Aligned_cols=173 Identities=12% Similarity=0.094 Sum_probs=119.2
Q ss_pred HHHHHHHHHhhhhHHHHHhHHHHH-HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHH
Q 010185 287 CTLIPFFQQFTGINVIMFYAPVLF-KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLV 365 (516)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 365 (516)
.+.+..+....+......+.|.++ +++|++..+.++..+...+..+++.++.|+++||+|||+.+..+.....++.+++
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 333344444555555565665554 5689999999999999999999999999999999999999988887777766655
Q ss_pred HHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 010185 366 GIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLS 445 (516)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 445 (516)
.+. ++.+..+....+...... ...+....+..|..|++.|+++.|+.+...++|..++|.+.+.
T Consensus 91 ~~~---------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 91 PLV---------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHH---------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 122222222222222222 3345566777899999999999999999999999999999998
Q ss_pred HHhhcchhhHHHHHHHHHHHHH-HHhhcccCC
Q 010185 446 MLCHFKFGLFFFFAGFVAVMTV-FVFYMVPET 476 (516)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 476 (516)
+.+ .++...+...+++.++.+ +..+..++.
T Consensus 155 l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 155 LVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 875 566555544444444443 333444443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=125.74 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
....++.++........+..+.|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+.++.++..++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 33344444444444445677789999999999999999999999999999999999999999999999888888887776
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... ++.+.......+.+.+.+.. .+....++.|.+|+++|++++++.+....+|+.++|.+.+
T Consensus 105 ~~~~---------------~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 105 FGFS---------------SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHH---------------hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 12222222222223333322 3555677789999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHHH-HHHHHHHHhhcccCC
Q 010185 445 SMLCHFKFGLFFFFAGF-VAVMTVFVFYMVPET 476 (516)
Q Consensus 445 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 476 (516)
.+.+..+|...+...++ ..+.+++..+.++|+
T Consensus 169 ~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 169 AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99998888766555444 333444444445543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=121.90 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=133.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhH-HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKM-SMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL 222 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 222 (516)
.+++.|..|+++|++.+++......+|..+++.+.+.+.+. .+|+..+++.+++.++..+...++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999998877643 489999999999888877665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=125.18 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=122.0
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
..+....|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++..+....
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 455666788888899999999999999999999999999999999999999998888877777776653
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHH
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFA 459 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 459 (516)
.+.+.......+.+.+ .....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..++...+...
T Consensus 80 ----~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 80 ----GAYVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred ----cCHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 1223333333333333 33345666778889999999999999999999999999999999998888876655554
Q ss_pred HHH-HHHHHHHhhcccCCC
Q 010185 460 GFV-AVMTVFVFYMVPETR 477 (516)
Q Consensus 460 ~~~-~~~~~~~~~~~~~~~ 477 (516)
++. .+..++..+..++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHhhheecCCC
Confidence 444 333444444455543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-12 Score=121.91 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=122.8
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 371 (516)
.+.............|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 90 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--- 90 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---
Confidence 33333444555556788888999999999999999999999999999999999999999998888877777766552
Q ss_pred hcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
++.+. +.......+.......+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 91 ------------~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 91 ------------NNIET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred ------------ccHHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12222 22222222222222345566777899999999999999999999999999999999998888
Q ss_pred hhhHHHH-HHHHHHHHHHHhhcccCCC
Q 010185 452 FGLFFFF-AGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 452 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 477 (516)
+...+.. ++...+..+..++..||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7655444 4444444444444555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-12 Score=121.99 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=120.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhh--hHHHHHHHhhhhcccccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNI--AMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~ 153 (516)
+.++.+.+++.+.+.++..+++++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 6788889999999999999999999999999999999999999999998888777643 34556778889988888888
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHH
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMT 216 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 216 (516)
...++.|.+|+++|+++.++......+|..++|.+.+.+.+. .||++.|++.+++.++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999998877644 489999998887766543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=119.71 Aligned_cols=159 Identities=9% Similarity=0.021 Sum_probs=117.1
Q ss_pred HHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 302 IMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 302 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
.....|.+.+++|.++.+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+.....
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 94 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------- 94 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3445688888999999999999999999999999999999999999999999988888887766552
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHH
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGF 461 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (516)
++.+...+.- ...+.......+....++.|.+|+++|+++.|+......++..++|++.+.+.+..+|...+...++
T Consensus 95 --~~~~~l~~~r-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISR-IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 1222222222 2222222223455567778999999999999999999999999999999999888887655554444
Q ss_pred -HHHHHHHHhhcccCC
Q 010185 462 -VAVMTVFVFYMVPET 476 (516)
Q Consensus 462 -~~~~~~~~~~~~~~~ 476 (516)
..+.........|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 333333434444543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=123.15 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhc
Q 010185 81 LLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSE 160 (516)
Q Consensus 81 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 160 (516)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44667788889999999999999999999999999999999998888888899889999999999999888888888889
Q ss_pred cCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCC
Q 010185 161 MAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDT 225 (516)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 225 (516)
.+|+++|+++.+++.....+|..+++.+.+.+.+. .||++.|++.+++.++..+..+++++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998887777644 389999999888877776665555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-11 Score=110.53 Aligned_cols=347 Identities=10% Similarity=0.085 Sum_probs=212.2
Q ss_pred ccCCchhHH-HHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccc
Q 010185 75 CKFDSQLLT-LFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 75 ~~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
.|++..|+. -+.-...-.+....++...++|..|.|++++++.+...+...+..+.++.+.+-+..++-|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 477888775 555666677888999999999999999999999999999999999999999999999999999884 667
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcC
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERG 233 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 233 (516)
-.+++-...|+++-.++.+...+...+|..++.++|-.+... +..+.+..+.+......+..+..+++|..++...-++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 788898899999889999999999999999888888776654 2336777777766666666666777887766554333
Q ss_pred CHHHHHHH----HHHHhCCCCcH-HHHHHHHH-HHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHH
Q 010185 234 HVDEAKKM----LQKIRGTPNVD-EEFQDLYD-ASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAP 307 (516)
Q Consensus 234 ~~~~~~~~----~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (516)
+.++..+. .++..+.++.+ ...+.... ........+.-++++.+ ....+..+...+-+....+++..+..|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~y~~~~ll~WSlWWa~atcgy~qv~nYvQ 271 (412)
T PF01770_consen 193 KPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKS-CYSNPRLLLWSLWWAFATCGYYQVINYVQ 271 (412)
T ss_pred cCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 32221110 00000000000 00000000 00000000111122221 11222233333334455556677777887
Q ss_pred HHHHhc---CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhH--HHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 308 VLFKTI---GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGV--QMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 308 ~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
.+.++. +-.....|..-+...+.+.++.+..|++..++.+...+.++.. +.+..++++...
T Consensus 272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t-------------- 337 (412)
T PF01770_consen 272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT-------------- 337 (412)
T ss_pred HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 777776 3344455777888888888889999998666655443333332 222223332221
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
++.|.......++...+.... ++...-++.....+.-|...|++.+...+-..+..
T Consensus 338 -~~Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 338 -GNIWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred -hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 344455555555555554433 33333333444556667788887766555544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=122.21 Aligned_cols=146 Identities=11% Similarity=0.067 Sum_probs=124.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78889999999999999999999999999999999999988887778777777888888888888999998888888889
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLP 223 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 223 (516)
+++.|.+|+++|++.+++......+|..++|.+++.+.+... +|...++......++..++.+++.
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888765432 566677666666655555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=122.05 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhcc
Q 010185 82 LTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEM 161 (516)
Q Consensus 82 ~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 161 (516)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++++++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999998888889998889999999999998888888889999
Q ss_pred CCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 162 APAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
+|+++|++++++.+....+|..++|.+++.+.+.. ||+..|.+.+++.++..+..++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988877543 8999999988877776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=112.98 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
.+.+.+..|..........-.+|.+.+++|.|...+|...+.++++..++.++...+.||+.||+++.....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 44444555556666667777889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
..+. .+...+...=+..+.....+.++...+..++.|+++|+++.++......+...+|.++..
T Consensus 95 ~alA----------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 95 SALA----------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHh----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 8873 333334333344444444556777788889999999999999999999999999999999
Q ss_pred HHHhhcchhh-HHHHHHHHHHHHHHHhhccc
Q 010185 445 SMLCHFKFGL-FFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 445 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 474 (516)
++-|.+||.. |+.++++..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999854 55556666666666667777
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=116.96 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=113.9
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGT 380 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (516)
......|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33445677788899999999999999999999999999999999999999999999888877666542
Q ss_pred cccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHH
Q 010185 381 LTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAG 460 (516)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~ 460 (516)
++.+.....-.+.+.+ .....+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+|...+.+.+
T Consensus 106 ---~~~~~l~~~r~l~G~~-~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 106 ---NSFSLLLIGRACLGLA-LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred ---ChHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 1223333332333333 223456667777899999999999999999999999999999999999888866555544
Q ss_pred HHHH
Q 010185 461 FVAV 464 (516)
Q Consensus 461 ~~~~ 464 (516)
+..+
T Consensus 182 ~l~~ 185 (394)
T PRK10213 182 VMGV 185 (394)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=117.83 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=120.0
Q ss_pred HHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIML 369 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~ 369 (516)
.+.....++.+..+.|.++.+ +|++..+++...........++.+++|+++||+ |||+.+.++.++..++.+++...
T Consensus 18 ~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~- 96 (493)
T PRK15462 18 QIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-
Confidence 334444566677778877654 799999999999999999999999999999999 99999999988888887655431
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchh--hhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 370 ALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE--IRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
............+...+.+ ...+...++++|.+|++ .|.++.++.+...++|+.++|.+.+++.
T Consensus 97 -------------~~~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 97 -------------EIHPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred -------------hcchhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 0011112222222222222 22344556788999875 6999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhc
Q 010185 448 CHFKFGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 448 ~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (516)
+..||...+..+++..+.+++.++.
T Consensus 163 ~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 163 EEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666666555555555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-12 Score=122.41 Aligned_cols=164 Identities=11% Similarity=0.069 Sum_probs=119.9
Q ss_pred hhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
....+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 80 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------- 80 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---------
Confidence 34456667788888899999999999999999999999999999999999999999988888887777653
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHH-HhHHHHhhcchhhHH
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQ-VFLSMLCHFKFGLFF 456 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~-~~~~~~~~~g~~~~~ 456 (516)
.+.+. +.......+.......+....++.|.+|+++|+++.++.+....+|..++++ +.+.+.+..++...+
T Consensus 81 ------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T TIGR00881 81 ------TSLWV-MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF 153 (379)
T ss_pred ------hhHHH-HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence 12222 2222233333333345667778889999999999999999999999999994 555555666665544
Q ss_pred HH-HHHHHHHHHHHhhcccCCC
Q 010185 457 FF-AGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 457 ~~-~~~~~~~~~~~~~~~~~~~ 477 (516)
.. +.+..+..++..+..++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 154 IVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHHheeeCCCc
Confidence 44 3344444455555555543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=117.32 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=123.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999988888888888999999999999999999988877777666666778888888999999999998888888
Q ss_pred hhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC
Q 010185 156 VYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD 224 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 224 (516)
.++.|..|+ +|+++++++.....+|..++|.+++.+.+.. ||+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHheecC
Confidence 899999876 4679999999999999999999988776543 8999999988888777766655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=117.93 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
..+.....+....+........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34444444555555566667888888999999999999999999999999999999999999999999888877777766
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... ++.+.......+.+.+ .....+....++.|.+|+++|+++.++.+....++..++|.+.+
T Consensus 85 ~~~~---------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 85 CSLA---------------ETSSLFLAGRFLQGIG-AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHHh---------------CcHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 1222222222222222 22224455677789999999999999999999999999999998
Q ss_pred HHHhhcchhhHH-HHHHHHHHHHHHHhhcccCCC
Q 010185 445 SMLCHFKFGLFF-FFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 445 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 477 (516)
.+.+..+|...+ +.+.+..+..++..+..+|++
T Consensus 149 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 149 LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 888777775544 444444455555555566543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=120.46 Aligned_cols=161 Identities=13% Similarity=0.062 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHH
Q 010185 286 MCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLV 365 (516)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 365 (516)
....+..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 100 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33334444444455556667788888899999999999999999999999999999999999999999998888888776
Q ss_pred HHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 010185 366 GIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLS 445 (516)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 445 (516)
.+. ++.+...+.-.+.+.+ .....+....++.|.+|++.|+++.++......+|..+++.+.+.
T Consensus 101 ~~~---------------~~~~~l~~~r~l~G~g-~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 101 GLA---------------SGVIMLTLSRFIVGMG-MAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHH---------------hHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 653 1222222222222222 223345556677899999999999999999999999999999988
Q ss_pred HHhhcchhhHHHHHHHH
Q 010185 446 MLCHFKFGLFFFFAGFV 462 (516)
Q Consensus 446 ~~~~~g~~~~~~~~~~~ 462 (516)
+.+..+|...+.+..+.
T Consensus 165 l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HcccCCHHHHHHHHHHH
Confidence 88888876666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-11 Score=117.17 Aligned_cols=169 Identities=8% Similarity=0.033 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHH
Q 010185 281 RPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFI 360 (516)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 360 (516)
+++..+...+.++.............|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455555555555555556677778888889999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
+.++.... ++.+.......+.+.+.+. ..+....++.|.+|++.|+.+.+..+....+++.++|
T Consensus 85 ~~~l~~~~---------------~~~~~~~~~~~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 85 AVAGLMFS---------------HSLALFSIAMFVLGVVSGI-TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHc---------------chHHHHHHHHHHHHHhhHh-hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 77666542 1222222222333333332 2344556677999999999999998888889999999
Q ss_pred HHhHHHHh-hcchhhHHHHHHHHHHH
Q 010185 441 QVFLSMLC-HFKFGLFFFFAGFVAVM 465 (516)
Q Consensus 441 ~~~~~~~~-~~g~~~~~~~~~~~~~~ 465 (516)
.+.+.+.+ ..+|...+...++..+.
T Consensus 149 ~~~~~l~~~~~gw~~~f~~~~~~~~~ 174 (394)
T PRK03699 149 IIAAYLLARSIEWYWVYACIGLVYVA 174 (394)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99888765 35676555544443333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-11 Score=119.18 Aligned_cols=175 Identities=11% Similarity=0.133 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHHHHh---cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHH
Q 010185 283 QLTMCTLIPFFQQFTGINVIMFYAPVLFKT---IGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQM 358 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~ 358 (516)
+.++.+.+..+....+++....++|.++++ +|++..+++.......+...++.+++|+++|| +|||+.+..+..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444444555555666777777877654 79999999999999999999999999999999 89999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh---hhhhHHHHHHHHHHH
Q 010185 359 FICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI---RSAGQAINVSTNMIF 435 (516)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g 435 (516)
.++.+++... ++.+...+...+ .+.......+....+++|.+|++. |+++.++.+...++|
T Consensus 90 ~~g~~~~~~~---------------~~~~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG 153 (475)
T TIGR00924 90 MLGHFMLAMS---------------IYPDLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIG 153 (475)
T ss_pred HHHHHHHHhc---------------ccHhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHH
Confidence 8888776652 112222222222 222222344566677778887654 888999999999999
Q ss_pred HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 436 TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
..++|.+.+.+.++.+|...+...++..+.+.+.+...
T Consensus 154 ~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~ 191 (475)
T TIGR00924 154 SFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAG 191 (475)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998888766666555555554444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=122.78 Aligned_cols=140 Identities=9% Similarity=0.046 Sum_probs=117.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhh--hchhHHHHH--HHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRM--YGRKMSMTV--GGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|.+..+.+++.++..++..+++++.|+++|| +++|+...+ +.++.+++.+++.+.++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 7899999999999999999999999999997 344443333 444445556667778899999999999999999999
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTV 217 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 217 (516)
+...+++.|.+|++++++.++++.....+|.++||.+++.+.+..+ +|++.|++.+++.++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999887765432 699999988877665544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=119.59 Aligned_cols=168 Identities=12% Similarity=-0.005 Sum_probs=119.8
Q ss_pred hhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
+........|.+.++.+.++.+.++..+...++..++.++.|+++||++||+.+..+..+.+++...+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL------ 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc------
Confidence 44556677888888888899999999999999999999999999999999999988877777666555432111
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHH
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFF 457 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~ 457 (516)
..++.+.......+.+.+.+ ...+....++.|..|+++|+++.++.+....+|..++|.+.+.+.+..++...+.
T Consensus 106 ----~~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~ 180 (417)
T PRK10489 106 ----PEPSLLAIYLLGLWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG 180 (417)
T ss_pred ----CCCcHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 00112222222222222222 2234445667799999999999999999999999999999999998877766666
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 010185 458 FAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~ 476 (516)
+.++..+.+.+..+.+|+.
T Consensus 181 ~~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 181 LAAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 6665555555555555543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=116.81 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=119.6
Q ss_pred hhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
+........|.+..+.+.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.......
T Consensus 14 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------ 87 (365)
T TIGR00900 14 GTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------ 87 (365)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 34455666777888889999999999999999999999999999999999999998888777776666553211
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHH
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFF 457 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~ 457 (516)
...+.+..... ....+.......+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+..++...+.
T Consensus 88 ----~~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 162 (365)
T TIGR00900 88 ----GGLNIWQVYVL-AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162 (365)
T ss_pred ----CCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00122222222 2233333333456667788899999999999999999999999999999999998888776665
Q ss_pred HHHHHHHHHHHHhh
Q 010185 458 FAGFVAVMTVFVFY 471 (516)
Q Consensus 458 ~~~~~~~~~~~~~~ 471 (516)
+.++..+.+.+..+
T Consensus 163 ~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 163 VDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=122.49 Aligned_cols=168 Identities=11% Similarity=0.034 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHH
Q 010185 283 QLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQ 362 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 362 (516)
+.+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34444455555555555666777788888899999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 010185 363 CLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
+++... .+.+... ....+.+.......+....++.|.+|++.|+++.++.+....+|..++|.+
T Consensus 100 ~~~~~~---------------~~~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 100 LACGFA---------------PGYWTLF-IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163 (496)
T ss_pred HHHHHH---------------hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766652 1222222 222222332233345556677899999999999999999999999999999
Q ss_pred hHHHHhhcchhhHHHHHHHHHHHH
Q 010185 443 FLSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
.+.+.+..+|...+.+..+..+..
T Consensus 164 ~~~l~~~~~w~~~f~~~~~~~~~~ 187 (496)
T PRK03893 164 YSLVVPVWGWRALFFIGILPIIFA 187 (496)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHH
Confidence 999998888776665544444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-11 Score=119.98 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
++...+..+...........+.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34444445555556667778899999999999999999999999999999999999999999999998887777766655
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... ++.+.......+ .+.......+....++.|.+|++.|+++.|+.+....++..++|.+.+
T Consensus 92 ~~~~---------------~~~~~l~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 92 CALS---------------GTLNELLLARVL-QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHh---------------CCHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4431 122222222222 222222335566677789999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHHH
Q 010185 445 SMLCHFKFGLFFFFAGF 461 (516)
Q Consensus 445 ~~~~~~g~~~~~~~~~~ 461 (516)
.+.+..+|...+.+...
T Consensus 156 ~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 156 LLVEYASWHWIFLINIP 172 (471)
T ss_pred HHHhhccHHHHHHHHHH
Confidence 99998887655554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=115.70 Aligned_cols=140 Identities=12% Similarity=0.038 Sum_probs=124.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHH-HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc
Q 010185 156 VYLSEMAPAKVRGALNIGFQ-MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF 220 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 220 (516)
.++.+. |+++|++..++++ ...++|.++++.++|.+.+.. ++ ..|++.++++++..++..
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHHHH
Confidence 999998 9889999999986 578899999999999988654 65 567777776665544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-11 Score=115.80 Aligned_cols=172 Identities=13% Similarity=0.040 Sum_probs=122.9
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHH
Q 010185 290 IPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIML 369 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 369 (516)
+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~- 88 (382)
T PRK10091 10 LGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS- 88 (382)
T ss_pred HHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-
Confidence 3333344444456667788888999999999999999999999999999999999999999999988888887776652
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 370 ALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
++.+...+.-.+.+.+.+ ...+.......|.+|++.|+++.++......++..++|++.+.+.+.
T Consensus 89 --------------~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 153 (382)
T PRK10091 89 --------------SSYLMLAIGRLVSGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE 153 (382)
T ss_pred --------------CcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh
Confidence 122222322222222222 22344455667889988999999999999999999999999999888
Q ss_pred cchhhHHHHHHH-HHHHHHHHhhcccCCC
Q 010185 450 FKFGLFFFFAGF-VAVMTVFVFYMVPETR 477 (516)
Q Consensus 450 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 477 (516)
.+|...+...++ ..+..+......|+.+
T Consensus 154 ~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 154 FSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 887655554444 3333333444566543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=123.46 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
+..+++..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33444444555555566777889999999999999999999999999999999999999999999999888888877776
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... .+...+.......+.......+....++.|.+|++.|+++.++......+|..++|.+.+
T Consensus 84 ~~~~----------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 147 (485)
T TIGR00711 84 CGVA----------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147 (485)
T ss_pred HhCc----------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh
Confidence 6542 122222333333333333445666788889999999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHH-HHHHHHHHHhhcccCC
Q 010185 445 SMLCHFKFGLFFFFAG-FVAVMTVFVFYMVPET 476 (516)
Q Consensus 445 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 476 (516)
.+.++.+|...+...+ +..+..++..+..+++
T Consensus 148 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 148 WIIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred HhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 9998888765544433 3333333344445543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=118.06 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=112.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch--hh-h-HHHHHHHhhhhcccc-c
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NI-A-MLIIGRLMLGVGVGF-A 150 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r~l~G~~~~~-~ 150 (516)
|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. + ....+.++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 66766677777778888999999999999999999999999999999887776432 21 1 233344444444443 3
Q ss_pred ccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhc---cccCCcchhHHHHHhHHHHHHHHHhhc-cCCCCh
Q 010185 151 NQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA---KISGGWGWRVSLALAAVPAILMTVGSF-FLPDTP 226 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~---~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p 226 (516)
.+....++.|.+|+++|++++++......+|.++++.+...+. ...+..+|++.|++.++++++..++.+ +.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 4677899999999999999999999999999998876654333 222345888899888877776665544 467765
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=119.01 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQC 363 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 363 (516)
.+...++..+....-......-.|.+.+++|.+..+.++....+.++..++.+..|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44455555555555666777788999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeeccc-CchhhhhhhHHHHHHHHHHHHHHHHHH
Q 010185 364 LVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEV-CALEIRSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
+.... ++.+..+..-.+.+.+.+ ...+.....+.+. .|++.|+++.|+......+|..++|.+
T Consensus 87 ~~~~a---------------~~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 87 AAAFS---------------PTASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHc---------------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652 222333332223333322 2334333334344 478999999999999999999999999
Q ss_pred hHHHHhhcchhhHHHHHH-HHHHHHHHHhhcccCC
Q 010185 443 FLSMLCHFKFGLFFFFAG-FVAVMTVFVFYMVPET 476 (516)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 476 (516)
.+.+.++.+|...+.+.. ++.+..++..+.+|++
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999988765555443 3334444444555554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=117.27 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=116.2
Q ss_pred hhHHHHHhHH-HHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 298 GINVIMFYAP-VLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 298 ~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
.........| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 82 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------- 82 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------
Confidence 3445556667 6667789999999999999999999999999999999999999999988888884444431
Q ss_pred CCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHH
Q 010185 377 GEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFF 456 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~ 456 (516)
++.+ .+.......+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++...+
T Consensus 83 -------~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~ 154 (352)
T PF07690_consen 83 -------SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF 154 (352)
T ss_dssp -------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred -------hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence 1333 33333333333333446677788889999999999999999999999999999999999888876555
Q ss_pred HHHHHHHHHHHH
Q 010185 457 FFAGFVAVMTVF 468 (516)
Q Consensus 457 ~~~~~~~~~~~~ 468 (516)
.+.++..+...+
T Consensus 155 ~~~~~~~~~~~i 166 (352)
T PF07690_consen 155 LISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccccchhhhhhh
Confidence 544444444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.73 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=114.1
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
.......|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344445678888899999999999999999999999999999999999999988887777766655442
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHH
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFA 459 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 459 (516)
++.+.......+.+.+ .....+....+..|.++++.++.+.++.+....++..++|.+.+.+.+..+|...+.+.
T Consensus 94 ----~~~~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 94 ----HSLTVLIAASAIQGLG-TGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred ----ccHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 1222222222222222 11223444456668888889999999999999999999999999998887876555544
Q ss_pred HH-HHHHHHHHhhcccCCC
Q 010185 460 GF-VAVMTVFVFYMVPETR 477 (516)
Q Consensus 460 ~~-~~~~~~~~~~~~~~~~ 477 (516)
++ ..+...+..++.||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 169 LLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHhCCccC
Confidence 33 3334444445556643
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=113.47 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=117.3
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHhcCCCchh-----HHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 290 IPFFQQFTGINVIMFYAPVLFKTIGFGAEA-----SLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
+..+...........+.|.+.++.|.+..+ .+...+...+...++.++.|+++||+|||+.+..+....+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 100 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL 100 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence 334444445556667788888888888654 377888889999999999999999999999998887777776665
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
+... ++.+...+...+.+. . .+..+....+..+..|++.|+++.++.+....++..++|.+.+
T Consensus 101 ~~~~---------------~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 101 MGLA---------------QNIWQFLILRALLGL-L-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred HHHH---------------hhHHHHHHHHHHHHH-h-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 122222222222222 2 2334555556678899999999999999999999999999999
Q ss_pred HHHhhcchhhHHHHHHHH-HHHHHHHhhcccCC
Q 010185 445 SMLCHFKFGLFFFFAGFV-AVMTVFVFYMVPET 476 (516)
Q Consensus 445 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 476 (516)
.+.+..++...+...++. .+..+...++.+++
T Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 164 LLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 998888876544444433 33334444445543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-11 Score=112.87 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=112.4
Q ss_pred hHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010185 299 INVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378 (516)
Q Consensus 299 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (516)
...+....|.+.+++|.+..+.++..+...++..++.+..|+++||+|||+++.........+.. ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~---------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD---------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence 34566678888899999999999999999999999999999999999998876544333333221 1110
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH
Q 010185 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF 458 (516)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 458 (516)
.++....+..-.+.+.+. +.........+|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|...+..
T Consensus 76 ----~~~~~~l~~~R~l~G~g~--~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 76 ----PFNYEWLLACQLLAALGQ--PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ----hccHHHHHHHHHHHHhHh--HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 011222222222222222 22223334446899999999999999999999999999999999988888766655
Q ss_pred -HHHHHHHHHHHhhcccCCC
Q 010185 459 -AGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 459 -~~~~~~~~~~~~~~~~~~~ 477 (516)
+++..+..++.++.+||.+
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 5555555555666677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=112.28 Aligned_cols=161 Identities=10% Similarity=0.099 Sum_probs=114.2
Q ss_pred hhHHHHHhHH-HHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCC
Q 010185 298 GINVIMFYAP-VLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLR 376 (516)
Q Consensus 298 ~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (516)
+.+....+.+ ++.++.|.++.+.++..+...+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------- 96 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------
Confidence 3334444444 4556789999999999999999999999999999999999999999988888888776542
Q ss_pred CCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHH
Q 010185 377 GEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFF 456 (516)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~ 456 (516)
++.+...+...+.+.+ .....+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+. ..++...+
T Consensus 97 -------~~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f 167 (400)
T PRK11646 97 -------HEPWLLWLSCILSGLG-GTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC 167 (400)
T ss_pred -------ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 1222222222222222 22334555666779999999999999999999999999999999988 56765544
Q ss_pred HHHHHH-HHHHHHHhhcccC
Q 010185 457 FFAGFV-AVMTVFVFYMVPE 475 (516)
Q Consensus 457 ~~~~~~-~~~~~~~~~~~~~ 475 (516)
.+.++. .+.+++..+..++
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 168 ATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 444333 3333333444454
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=111.57 Aligned_cols=145 Identities=15% Similarity=0.081 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhhHHHHHhHHH-HHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHH
Q 010185 288 TLIPFFQQFTGINVIMFYAPV-LFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVG 366 (516)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 366 (516)
.++.++..+........+.|. +.+++|+++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 333444445555667777884 6678999999999999999999999999999999999999999999888888877766
Q ss_pred HHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 010185 367 IMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~ 446 (516)
.. ..+...+....+..+..+ +..+....++.|.+|+++|+++.++......+|..+++.+.+.+
T Consensus 86 ~~---------------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 86 LA---------------VQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HH---------------hhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 53 102222222222222222 22334456778999999999999999988888888887777666
Q ss_pred Hh
Q 010185 447 LC 448 (516)
Q Consensus 447 ~~ 448 (516)
..
T Consensus 150 ~~ 151 (366)
T TIGR00886 150 IG 151 (366)
T ss_pred HH
Confidence 54
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=114.43 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=105.7
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 371 (516)
++...........+.|.+.+++|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 121 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 33333344455566778888999999999999888999999999999999999999999888877777766655542
Q ss_pred hcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh---
Q 010185 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC--- 448 (516)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~--- 448 (516)
.+.+...+..++.+.+.+ ...+ ...++.|.+|++.|+++.|+.+...++|+.+++.+.+.+..
T Consensus 122 ------------~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~ 187 (476)
T PLN00028 122 ------------SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK 187 (476)
T ss_pred ------------cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222 2222 33456799999999999999998888888888776655432
Q ss_pred -h-----cchhhHHHHHHHHHHH
Q 010185 449 -H-----FKFGLFFFFAGFVAVM 465 (516)
Q Consensus 449 -~-----~g~~~~~~~~~~~~~~ 465 (516)
. .+|...+.+.++..+.
T Consensus 188 ~~~~~~~~gWr~~f~i~g~l~l~ 210 (476)
T PLN00028 188 DAGAPSFTAWRIAFFVPGLLHII 210 (476)
T ss_pred hcCCcchhhhHHHHHHHHHHHHH
Confidence 1 3565555544444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-11 Score=118.25 Aligned_cols=147 Identities=17% Similarity=0.022 Sum_probs=110.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHH--HHhchhhhHHHHHHHhhhhccccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAII--NGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+|++..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.|++......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 3889999999999999999999999999999999998877655444443322 23345666777888888865433333
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHH-HHHHHHHHHhhhccc---------cCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITI-GILIANLVNYGTAKI---------SGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~---------~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
.......|.+|+++|+++.|+.+....+ |..++|.+.+.+.+. ....+|+..|++..+..++..+..++
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 3345677999999999999999988886 778999888877761 00347999998887777666555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=112.02 Aligned_cols=157 Identities=10% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
.......+.+.++.+.++.+.++......+...+..++.|++.||+|||+++..+..+.+++.+++...
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~----------- 88 (393)
T PRK11195 20 NALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG----------- 88 (393)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----------
Confidence 334445555677888888899999999999999999999999999999999999988887766655431
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHH
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFA 459 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~ 459 (516)
... ... ....+.......|...+++.|.+|+++|+++.|+.+....++..++|.+.|.+.+.. +...+...
T Consensus 89 -----~~~--~~~-r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~ 159 (393)
T PRK11195 89 -----IHP--LLA-YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVC 159 (393)
T ss_pred -----HHH--HHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 111 111 122333334456777888899999999999999999999999999999999998864 33333333
Q ss_pred HHHHHHHHHHhhcccCC
Q 010185 460 GFVAVMTVFVFYMVPET 476 (516)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (516)
+.+.+.+.+..+.+||.
T Consensus 160 ~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 160 ALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 33333344444556654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=113.42 Aligned_cols=175 Identities=11% Similarity=0.123 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHH-HHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHHHH
Q 010185 283 QLTMCTLIPFFQQFTGINVIMFYAPVL-FKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQMFI 360 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~ 360 (516)
..+..+... +..-.+++....+.+.+ .+++|++..++.+..........+..+++|+++|| +|||+.+..+.++..+
T Consensus 15 ~~~~~~~~~-~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 15 PFFMIFFVE-LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 334444443 33444555555555544 45689999999888888888888888899999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh--hhhhHHHHHHHHHHHHHH
Q 010185 361 CQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI--RSAGQAINVSTNMIFTFV 438 (516)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i 438 (516)
+.+++.+.. .....+.......+.......+....++.|.+|++. |+.++++.+...++|..+
T Consensus 94 g~~~~~~~~---------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 94 GYFMTGMSL---------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHhc---------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 888776521 111112122222222233345566678889998774 577899999999999999
Q ss_pred HHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 439 VGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 439 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
+|.+.+++.++.||...+.+..+..+.+++.+...
T Consensus 159 g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 159 SLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998766666655555555544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-10 Score=113.65 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=107.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
.+..+.+++.+...++.+++.++.+++.||+|||+.+..+.++..++.++...... .........+...-
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~~~r 122 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG----------SSPKSVMATLCFWR 122 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC----------cccchHHHHHHHHH
Confidence 34556688899999999999999999999999999998888888777766554210 00000112222222
Q ss_pred HHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh-----------------------hcc
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC-----------------------HFK 451 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------------~~g 451 (516)
...+.......+....++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+
T Consensus 123 ~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (502)
T TIGR00887 123 FWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM 202 (502)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence 222222333356677888999999999999999999999999888888765532 125
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccCCCC
Q 010185 452 FGLFFFFAGFVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (516)
|...+.+.++..+...+..+++||+.+
T Consensus 203 WR~~~~~~~ip~~i~~~~~~~lpESpr 229 (502)
T TIGR00887 203 WRILIGFGAVPALLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666667888643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=115.63 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=107.0
Q ss_pred HHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 302 IMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 302 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
+....|++.++ |++..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++.+...
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----------- 115 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----------- 115 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence 45567877776 999999999999999999999999999999999999999888888777776655310
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH-HHHhhcchhhHHHH-H
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL-SMLCHFKFGLFFFF-A 459 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~-~~~~~~g~~~~~~~-~ 459 (516)
...+.+.......+.+.+.+.. .+.....+.|.+|++.|++++|+.+....+|+.+.+++.+ .+....+|...+.+ +
T Consensus 116 ~~~~~~~~~~~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 116 ATSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred ccccHHHHHHHHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 0011222222223333333322 3333345568899999999999999998888755444432 33333355544444 3
Q ss_pred HHHHHHHHHHhhcccCC
Q 010185 460 GFVAVMTVFVFYMVPET 476 (516)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (516)
.+..+..++..++++|+
T Consensus 195 ~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 195 FAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 44444445555556654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-11 Score=116.60 Aligned_cols=179 Identities=12% Similarity=0.063 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
++...+...........+....|++.+ .|+++.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 107 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLL 107 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHH
Confidence 333333333333333334556676655 6999999999999999999999999999999999999888887777777666
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
+..... ...+.+.......+.+.+.+.. .+.....+.|.+|++.|+++.|+.+....+++.+++++.+
T Consensus 108 ~~~~~~-----------~~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 108 MGFVPW-----------ATSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred Hhcccc-----------ccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 543200 0011111222222223332222 3344455668999999999999999999999999998887
Q ss_pred HHHh-hcchhhHHHH-HHHHHHHHHHHhhcccCC
Q 010185 445 SMLC-HFKFGLFFFF-AGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 445 ~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 476 (516)
...+ ..+|...+.. +.+..+..++.+++.+|+
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6554 3566655554 444444445555555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=112.52 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=113.9
Q ss_pred HhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 304 FYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 304 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
--.|.+.++++.+..+.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 37 p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--------------- 101 (413)
T PRK15403 37 PGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--------------- 101 (413)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 33456667889999999999999999999999999999999999999998887777776666542
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
++.+..+..-++.+.+.+ ...+....+..|.+|++.++++.++.+....++..++|.+.+.+.+..+|...+...++..
T Consensus 102 ~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 102 TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 122222222222222222 2234445677789999999999999999999999999999999888878766555544443
Q ss_pred HHHHH-HhhcccCCC
Q 010185 464 VMTVF-VFYMVPETR 477 (516)
Q Consensus 464 ~~~~~-~~~~~~~~~ 477 (516)
+.+.+ ..+.+||++
T Consensus 181 ~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 181 LIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHhCCCCc
Confidence 43333 344566653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=115.99 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=114.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-----h------hhhHHHHHHHhhh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-----V------NIAMLIIGRLMLG 144 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~------~~~~l~~~r~l~G 144 (516)
|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999988888887777621 1 2233333333333
Q ss_pred hcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CC
Q 010185 145 VGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LP 223 (516)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~ 223 (516)
.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.+. .+|++.|++.++++++..++..+ .|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHHHHHheecc
Confidence 333334566677889999999999999999999999999999987766543 38999999888887776665544 67
Q ss_pred CCh
Q 010185 224 DTP 226 (516)
Q Consensus 224 e~p 226 (516)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-10 Score=110.22 Aligned_cols=154 Identities=12% Similarity=-0.003 Sum_probs=108.3
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccch
Q 010185 306 APVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFD 385 (516)
Q Consensus 306 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (516)
.|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.... ++
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------------~~ 93 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV---------------ES 93 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh---------------cC
Confidence 344567789999999999999999999999999999999999999988877777666655442 12
Q ss_pred hHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHH
Q 010185 386 ADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVM 465 (516)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 465 (516)
.+.......+.+.+.+ ...+....+..|.+|++.++...+..+....++..++|.+.+.+.+..+|...+...++..+.
T Consensus 94 ~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 2222222222222211 122334456678999888999999988889999999999999999988876655544444444
Q ss_pred HHHHhhcccC
Q 010185 466 TVFVFYMVPE 475 (516)
Q Consensus 466 ~~~~~~~~~~ 475 (516)
..+..+..++
T Consensus 173 ~~~~~~~~~~ 182 (401)
T PRK11043 173 LILPTLRLKP 182 (401)
T ss_pred HHHHHHHcCC
Confidence 4433344443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=111.99 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=111.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh---c-hhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA---A-VNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.+.. . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 667666656666666777888999999999999999999887766655443322 2 234455556677788888888
Q ss_pred cchhhhhhccCCcCccchhHHHHH-HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQ-MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+.+... .+|+..+...++..++..+..+.++|+.
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 888999999999999988888854 4455889999999887765332 2588888887777777766666666643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=109.76 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=115.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhcccccccch
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 78999999999999999999999999999999999999998888877776655333 32222 2346688888888877
Q ss_pred hhhhhccCC-cCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCCh
Q 010185 155 PVYLSEMAP-AKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTP 226 (516)
Q Consensus 155 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 226 (516)
.....+..+ +++|++..+..+....++..++|.+.+.+.+..+ +|...|.+..+.+++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 5678999999999999999999999988887654 5788888877766665544 44477765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=111.27 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=114.4
Q ss_pred hHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010185 299 INVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378 (516)
Q Consensus 299 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (516)
...+....|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444445567778899999999999999999999999999999999999999988887777776665442
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH
Q 010185 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF 458 (516)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 458 (516)
++.+.......+.+.+ .....+.....+.|.+|++.|.++.++......++..++|.+.+.+.+..+|...+.+
T Consensus 99 -----~~~~~l~~~~~l~G~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 -----QSIEQFTLLRFLQGIG-LCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred -----ccHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 1222222222222222 2222345566777999999999999998888889999999999999888787655544
Q ss_pred HH-HHHHHHHHHhhcccCCC
Q 010185 459 AG-FVAVMTVFVFYMVPETR 477 (516)
Q Consensus 459 ~~-~~~~~~~~~~~~~~~~~ 477 (516)
.+ +..+..+..++..||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 43 33333333444456543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=111.64 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=118.3
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGT 380 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (516)
...-..|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++..++...
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------ 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------ 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 34456677888899999999999999999999999999999999999999998888888877776652
Q ss_pred cccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH-H
Q 010185 381 LTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF-A 459 (516)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~-~ 459 (516)
++.+.......+.+ .......+....++.|.+|++.|+++.++.+....++..++|.+.+.+.+..++...+.. +
T Consensus 77 ---~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 ---QTIDQLIYMRFLHG-LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred ---ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 12222222222222 222233445566778999999999999999999999999999999999988887555444 4
Q ss_pred HHHHHHHHHHhhcccCC
Q 010185 460 GFVAVMTVFVFYMVPET 476 (516)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (516)
.+..+..++..+..+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 153 LAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 44444444444555554
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=110.51 Aligned_cols=150 Identities=11% Similarity=-0.061 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
.+......+...........+.|.+.+++|.|..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566677778899999999999999999999999999999999999999999999999888888877776
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
.... ++.+..++...+.+.+.+ ...+.......+..++++|+++.+..+....+|..++|.+.+
T Consensus 88 ~~~~---------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 88 LGLM---------------VGFWSWLAWRFVAGIGCA-MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHh---------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6542 222333333222232222 223433344457788899999999999999999999999999
Q ss_pred HHHhhc
Q 010185 445 SMLCHF 450 (516)
Q Consensus 445 ~~~~~~ 450 (516)
.+.+..
T Consensus 152 ~l~~~~ 157 (381)
T PRK03633 152 KVSTEL 157 (381)
T ss_pred cccccc
Confidence 877653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-11 Score=114.57 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=108.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHH--HHHHh--chhhhHHHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGA--IINGA--AVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999998876555444333 22222 2567777788899999998899
Q ss_pred cchhhhhhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAI 213 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~ 213 (516)
+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+.+..+ +|+..++...+..+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 9999999999999999999998 456677899999999888876542 38877766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=110.39 Aligned_cols=143 Identities=8% Similarity=-0.005 Sum_probs=100.3
Q ss_pred hhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 298 GINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
.......+.+.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++......
T Consensus 28 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------- 100 (402)
T TIGR00897 28 GDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL------- 100 (402)
T ss_pred hhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3334455666677889999999999999999999999999999999999999999888887777654432110
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHH-HHHHHHhHHHHhhcch
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFT-FVVGQVFLSMLCHFKF 452 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~~~~~~~~~~g~ 452 (516)
...+.+.......+.+.+.+ ...+.......+..|+++|++++|+.+....+|. .++|.+.+.+.+..++
T Consensus 101 ----~~~~~~~l~~~~~i~G~g~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 101 ----GHANYPLILLFYGIRGLGYP-LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred ----cCccHHHHHHHHHHHHcchH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 00112222222222222221 1223334455688899999999999999999986 5788888888877774
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-09 Score=99.78 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcC
Q 010185 86 TSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAK 165 (516)
Q Consensus 86 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 165 (516)
.++-+....+++++.+.+.|+.|.|..+.++...+....+.+-+ +|-+.++++-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67777888899999999999999999999999999887777644 55777889999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccCC-----cchh--------------HHHHHhHHHHHHHHHhhccCCCCh
Q 010185 166 VRGALNIGFQMAITIGILIANLVNYGTAKISGG-----WGWR--------------VSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~-----~~wr--------------~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
.+.+..++.......+.++|..+-.......+. .+-+ ..+.+...+..+..+...+.|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999888888888887764433322210 1121 111111111222222222333211
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 227 NSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
... + .+.. +.......+..++....++++......+..... ........
T Consensus 215 -~~~------~---------------------~~~~--~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~-~Sf~~~iy 263 (461)
T KOG3098|consen 215 -VVN------C---------------------KSSS--ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLE-TSFWISIY 263 (461)
T ss_pred -hhh------h---------------------hhhc--cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH-HHHHHhcc
Confidence 000 0 0000 001111223333333344444433332222111 11222222
Q ss_pred H-HHHH--hcCCC-chhHHHHHHHHHHHHHHHhHhHhhhhcc---cCCchHHHhhhHHHHHHHHHHHHHHHHhcC--CCC
Q 010185 307 P-VLFK--TIGFG-AEASLMSAVITGVVNVVATLVSVFSVDK---FGRRVLFLEGGVQMFICQCLVGIMLALKFG--LRG 377 (516)
Q Consensus 307 ~-~~~~--~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 377 (516)
| .+.- ..+.+ ....++.....+++.+++....+.+.+| +|+++.+.++..+..+..++.......... .++
T Consensus 264 pt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~ 343 (461)
T KOG3098|consen 264 PTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTD 343 (461)
T ss_pred chhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCc
Confidence 2 1111 22222 2334556666777888888888877766 477777777766666555554432211110 000
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLS 445 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 445 (516)
..+............+....+..-..+....+.++...+| +.|.++.++.-+-..+.+.++-...+.
T Consensus 344 ~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 344 SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000001112222222233333333445666777777885 778888888887777777665555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=116.05 Aligned_cols=144 Identities=8% Similarity=-0.020 Sum_probs=107.6
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
+++++..+.+.+.+...++..++.++.|++.||+|+|+.+..+.++..++.++..... ......++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~l~ 135 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA--------------GGGIALVV 135 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH--------------HcCchHHH
Confidence 5678889999999999999999999999999999999999888877777666554321 11122233
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc-chhhHHHHHHHHHHHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF-KFGLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 469 (516)
..-++.+.......+....++.|.+|++.|+++.|+.+....+|..+++++.+.+.+.. +|...+.+.++..+...+.
T Consensus 136 ~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~ 214 (465)
T TIGR00894 136 FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLL 214 (465)
T ss_pred HHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHH
Confidence 33333344444456677788889999999999999999999999999999999999884 8765555544444433333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=109.68 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=109.8
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHH-HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHHHHHHHHH
Q 010185 288 TLIPFFQQFTGINVIMFYAPVLF-KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQMFICQCLV 365 (516)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~ 365 (516)
.+...+....+++....+.+.++ +++|++..+++..............+++|+++|| +|||+.+..+..+..++..++
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 33333444445556666666665 5689999888777777665656666789999999 599999999988888877666
Q ss_pred HHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh--hhhhHHHHHHHHHHHHHHHHHHh
Q 010185 366 GIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI--RSAGQAINVSTNMIFTFVVGQVF 443 (516)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~~ 443 (516)
... .+..+.......+.+.+ .....+....+..|.+|++. ++.+.++.+...++|..++|.+.
T Consensus 106 ~~~--------------~~~~~~l~~~~~l~gig-~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 106 AWS--------------GHDAGIVYMGMATIAVG-NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHh--------------cccHHHHHHHHHHHHHh-hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 542 01112222222222222 22234555567788887543 45678888999999999999999
Q ss_pred HHHHhhcchhhHHHHHHHHHHHH
Q 010185 444 LSMLCHFKFGLFFFFAGFVAVMT 466 (516)
Q Consensus 444 ~~~~~~~g~~~~~~~~~~~~~~~ 466 (516)
+++.++.+|...+...++..+.+
T Consensus 171 g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 171 PWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999888876665555443433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-10 Score=108.97 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=133.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchh--HHHHHHHHHHHHHHHHHHh--------chhhhHHHHHHHhh
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRK--MSMTVGGISFLIGAIINGA--------AVNIAMLIIGRLML 143 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~ 143 (516)
++|++..+...+.-+..+...+|++++|++.||+|.| +++.++++++.+..+...+ .++.+.+.+.-++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999 9999999888776666666 68889999999999
Q ss_pred hhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCC
Q 010185 144 GVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLP 223 (516)
Q Consensus 144 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 223 (516)
|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+..+ +-|+.++...++.++.+++..+++
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999888887764 578888887777777777766665
Q ss_pred CC
Q 010185 224 DT 225 (516)
Q Consensus 224 e~ 225 (516)
.+
T Consensus 469 ~~ 470 (477)
T PF11700_consen 469 VE 470 (477)
T ss_pred ch
Confidence 54
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=105.12 Aligned_cols=152 Identities=13% Similarity=0.001 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHH
Q 010185 283 QLTMCTLIPFFQQFTGINVIMFYAPVLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFIC 361 (516)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 361 (516)
+.+....+.+...+..........+.+.+ ++|+|..+.+++.++..+...+.++..|++.||+|.|+++.++..+..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444444444444555555 68999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHH
Q 010185 362 QCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQ 441 (516)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 441 (516)
.+...+... ...++.+..++...+.+.+ ....+.....+++.+|++.||++.|+....+++|..+++.
T Consensus 114 ~~~~~~a~~----------~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 114 CVWLGIAVQ----------NPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHc----------ccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 776654210 0001222222222222222 2334555667789999999999999997777777776666
Q ss_pred HhHHH
Q 010185 442 VFLSM 446 (516)
Q Consensus 442 ~~~~~ 446 (516)
+.+.+
T Consensus 182 l~p~~ 186 (462)
T PRK15034 182 VAPLV 186 (462)
T ss_pred HHHHH
Confidence 65543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-10 Score=102.09 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQC 363 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 363 (516)
.++...+.+...++....+....+.+-+++|+|+.|.+++.++..+.+.+.++..|.+.||+|.|+....+.++..+-.+
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~ 94 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCL 94 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence 34444444444444444555556666678999999999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Q 010185 364 LVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVF 443 (516)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 443 (516)
.+.+.. +.++. ..+ ..+-...+.+.+.......++++.+|++++|.++|+.. .+++|..+...+.
T Consensus 95 ~~~~a~------------~~~~~-~~l-l~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 95 GLAFAV------------TYPST-WQL-LVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHc------------cCCch-HHH-HHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 777642 11222 222 22333333344445666778889999999999999988 9999999999999
Q ss_pred HHHHhhcc---hhh-HHHHHHHHHHHHHHHhhccc
Q 010185 444 LSMLCHFK---FGL-FFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 444 ~~~~~~~g---~~~-~~~~~~~~~~~~~~~~~~~~ 474 (516)
+.+....+ +.. ..++.....+..+..++...
T Consensus 160 P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 160 PLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988887 443 33344444444555555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=103.25 Aligned_cols=161 Identities=8% Similarity=0.026 Sum_probs=122.6
Q ss_pred hHHHHHhHHHHHHhcCCCchh-HHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCC
Q 010185 299 INVIMFYAPVLFKTIGFGAEA-SLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRG 377 (516)
Q Consensus 299 ~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (516)
-....+..|++.+++|++..+ .+.+......+..+..+..|++.||+|.|+.+.++.+...+..++.++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--------- 112 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--------- 112 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 345666788888899999999 9999999999999999999999999999999999998888888888773
Q ss_pred CCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh---
Q 010185 378 EGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL--- 454 (516)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~--- 454 (516)
.....+.+.-++.+....... ....++...+|++.|+++.|+.+....+|.++++++.+. ....+|..
T Consensus 113 -------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~ 183 (511)
T TIGR00806 113 -------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST 183 (511)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence 222223333233333333333 667788899999999999999999999999999999999 55566543
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 010185 455 FFFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
...+.....+++++..+++|..+
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 33445555556666666777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=106.01 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=116.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999988888999999999999999999999899999
Q ss_pred hhhhccCCcCccchhHHHHH-HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHH
Q 010185 156 VYLSEMAPAKVRGALNIGFQ-MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTV 217 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 217 (516)
.++.+. +++++++..+... ...++|..+||.++|.+.+.. ++ ..|+..+++.++.++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHH
Confidence 998887 5566788888886 556788899999999887654 66 456666655554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=106.06 Aligned_cols=146 Identities=8% Similarity=-0.057 Sum_probs=107.5
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHH
Q 010185 289 LIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIM 368 (516)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 368 (516)
+..++.............|.+.+++|.+..+.++..+...++..++++..+++.||+|||+.+..+..+++++.+++...
T Consensus 9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~ 88 (410)
T TIGR00885 9 TSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA 88 (410)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556677788888899999999999999999999999999999999999999999999888887775432
Q ss_pred HHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 369 LALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
... ++.+..+...++.+.+.+.. .+....++.+..|++.+++..++.+....+|..++|.+.+.+.
T Consensus 89 ~~~------------~~~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 89 AEI------------MNYTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred Hhh------------ccHHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 12222222223333332222 3333455667889899999999999999999999999988775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=106.57 Aligned_cols=146 Identities=11% Similarity=0.087 Sum_probs=113.8
Q ss_pred cCCchhHHHHHH-HHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhc-hhhhHHHHHHHhhhhccccc
Q 010185 76 KFDSQLLTLFTS-SLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIIN---GAA-VNIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 76 ~~s~~~~~~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~~~~ 150 (516)
|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 6678999999999999999999998887766655554332 233 45555555666666666666
Q ss_pred ccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCC
Q 010185 151 NQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPD 224 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 224 (516)
.+...++..+..+++.+++..++.+....+|..+++.+++.+.+.. ||+..|.+.++++++..+....+++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888899999999999999999999999988888877776543 8999999988888887666655544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=95.95 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=114.5
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-------hhhhHHHHHHHhhhhc
Q 010185 74 YCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-------VNIAMLIIGRLMLGVG 146 (516)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~ 146 (516)
.+|+|.+|...+.+...+|..+| ++.|.+.|++|+|.++.+|.+...+|..+...+ .++|.+.+..++.|.+
T Consensus 31 ~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s 109 (250)
T PF06813_consen 31 RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNS 109 (250)
T ss_pred HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHccc
Confidence 34999999999999999999875 889999999999999999999999998887664 4678888888899998
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
.+...+++.....+.|| ++||.+.|+.-...+++..+-..+...+- ++..-+..+.+...+.++.++...++++.|
T Consensus 110 ~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f---~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 110 SCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF---GDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 88777887777788897 46999999999999999887766643332 222344444445555555555555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=106.64 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=119.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+.+....|.+.+...+...++.+..|++.||+|||+.+.++.++.+++..+..++++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999888888899999999999999999776666666
Q ss_pred hhhhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhh
Q 010185 156 VYLSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGS 219 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 219 (516)
.+..+..+++.++...+. .+....+|..+++.+++.+.+.. ||+..|.+.+++.++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHHHHHH
Confidence 777888888877776665 66789999999999988887654 89999999888877665543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=107.22 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=131.6
Q ss_pred hccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhh
Q 010185 276 LRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGG 355 (516)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 355 (516)
++++..+.++..-.+..+. ......-.+.+..+..-|+...+++.....+..++.++++|.+.||+.||++++.+-
T Consensus 7 lr~~~Fr~lw~a~~iS~lG----~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 7 LRNRNFRRLWIAQLISNLG----DWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred ccCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 3444445555554444433 333444445555566677888899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHH
Q 010185 356 VQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIF 435 (516)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (516)
++.++..+.+.+.... +..+.+.++...+..+.......|...+.+.|+.|+++...+.++.+...++.
T Consensus 83 ~~~~~~~~~L~~l~~~-----------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 83 LLRALVALLLAVLAFF-----------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIA 151 (524)
T ss_pred HHHHHHHHHHHHHHHh-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 8877766666554322 12233333333344444444457788888899999999999999999999999
Q ss_pred HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhccc
Q 010185 436 TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
..+||.++|.+....|....+.+-+++.+..+......+
T Consensus 152 r~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 152 RIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999988876666666666666655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-11 Score=110.18 Aligned_cols=178 Identities=12% Similarity=0.023 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHH
Q 010185 287 CTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVG 366 (516)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 366 (516)
.+++....+..--+.+....+-..+.++.+.+..|++.....+...++++++|++.||++||+++.++..+..++.+...
T Consensus 37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence 33333344444444444455555556799999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 010185 367 IMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~ 446 (516)
+. ...+.+.+.-.+.+....++.|+...+++|.+|.++|++++++.++...+|+.+|-.....+
T Consensus 117 fs----------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 117 FS----------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred HH----------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 74 23333333334444445566889999999999999999999999999999998888877777
Q ss_pred Hhhcc-hhh-HHHHHHHHHHHHHHHhhcccCCCCCC
Q 010185 447 LCHFK-FGL-FFFFAGFVAVMTVFVFYMVPETRNVP 480 (516)
Q Consensus 447 ~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (516)
.+..+ |.. +...+++.++++++..++.+|++++.
T Consensus 181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred ccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 77666 543 44455566666666677777776553
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=113.30 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=110.3
Q ss_pred hHHHHHHhcCCC---chhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 305 YAPVLFKTIGFG---AEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 305 ~~~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
+.|.+.++++++ ..+.++..+...++.+++.++.|+++||+|||+.+.++.++..++.++..+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------- 177 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------- 177 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------------
Confidence 445666677888 8888999999999999999999999999999999998888877777666542
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHH
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGF 461 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~ 461 (516)
.+...+.....+.+.......+....++.|.+|++.|+.+.++......+|.++++.+...+.+ |...+...++
T Consensus 178 ---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i 251 (505)
T TIGR00898 178 ---PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSL 251 (505)
T ss_pred ---ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHH
Confidence 2222333333333333334466777888899999999999999988888888888877655443 5444444444
Q ss_pred HHHHHHHHhhcccCC
Q 010185 462 VAVMTVFVFYMVPET 476 (516)
Q Consensus 462 ~~~~~~~~~~~~~~~ 476 (516)
..+...+..++++|.
T Consensus 252 ~~~~~~~~~~~~~es 266 (505)
T TIGR00898 252 PTFLFFLLSWFVPES 266 (505)
T ss_pred HHHHHHHHHHhcCCC
Confidence 444444455666765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-10 Score=101.99 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=135.6
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+++|++..+..++.....+...++++++|+|.||+|.|+++.++++++.+.++...+...-..+.++-.+.|...|+.+.
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 35699999999999999999999999999999999999999999999999999998888888888889999999999999
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCC
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDT 225 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 225 (516)
.+.++.++..|+++-++.+|+++...-.+..+||.+-+.+.+..+ +-|..+....++..+.+++..++|+.
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999999888887776 57777777666666666666666654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=102.58 Aligned_cols=170 Identities=12% Similarity=-0.006 Sum_probs=105.0
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHhcC---CCchh---HHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHH
Q 010185 290 IPFFQQFTGINVIMFYAPVLFKTIG---FGAEA---SLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQC 363 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 363 (516)
+..+........+....|.+.++++ .+..+ .+.......++..+++++.|++.||+|||+.+..+..+..++.+
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344444455556667777777763 34443 23344455566669999999999999999999999998888888
Q ss_pred HHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Q 010185 364 LVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVF 443 (516)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 443 (516)
+.++..... . ........+...-...+....+..+....++.|.+|+++|+...++.+.....|..+++.+.
T Consensus 109 ~~~~~~~~~-------~-~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 109 VIACLPGYE-------T-IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHhhcCCch-------h-HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 776521000 0 00001112222222222222334566778889999999999999988777777777776654
Q ss_pred HHHH--------hhcchhhHHHHHHHHHHHHH
Q 010185 444 LSML--------CHFKFGLFFFFAGFVAVMTV 467 (516)
Q Consensus 444 ~~~~--------~~~g~~~~~~~~~~~~~~~~ 467 (516)
..+. +..+|...+.+.++..+...
T Consensus 181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~ 212 (432)
T PRK10406 181 VVLQQTLEDAELREWGWRIPFALGAVLAVVAL 212 (432)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence 4433 24577766666555544443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=104.77 Aligned_cols=152 Identities=11% Similarity=-0.050 Sum_probs=111.3
Q ss_pred HhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcC
Q 010185 295 QFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
...+...+.+++-..+++.+..+..-|......-.+.++..++.+++.+|+|+-+++.+++.+..+=++.+..+
T Consensus 383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------ 456 (618)
T KOG3762|consen 383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------ 456 (618)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------
Confidence 33344555566666678888777777878788888899999999999999999999999988888888777764
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHH-HHHHHHHHHHhHHHHhhcchh
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN-MIFTFVVGQVFLSMLCHFKFG 453 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~~~~~~~~~~g~~ 453 (516)
++.|..+..-.+-+...+.. .....+|++...|++.+.++.++..... .+|-.+|+.+.|.+.+.++..
T Consensus 457 ---------~n~W~vLPieilqgit~ali-Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ 526 (618)
T KOG3762|consen 457 ---------QNPWMVLPIEILQGITHALI-WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGAR 526 (618)
T ss_pred ---------cCchheeeHHHHHHHHHHHH-HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhH
Confidence 34554444444444444433 3444678889999999999999988754 678888889999988888854
Q ss_pred hHH-HHHHHH
Q 010185 454 LFF-FFAGFV 462 (516)
Q Consensus 454 ~~~-~~~~~~ 462 (516)
..+ +++..|
T Consensus 527 ttf~~~giAc 536 (618)
T KOG3762|consen 527 TTFRIFGIAC 536 (618)
T ss_pred HHHHHHHHHH
Confidence 444 333333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-09 Score=102.15 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=118.7
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc-----CCch-HHHhhhHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF-----GRRV-LFLEGGVQMFICQCLV 365 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~-~~~~~~~~~~~~~~~~ 365 (516)
++.+.........-.|.++++.|+|.++.|+....... .+..++.|+++||+ |||| .+..+..+++++...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 44455566677778899999999999999988666654 58889999999999 7765 6777777776666665
Q ss_pred HHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 010185 366 GIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLS 445 (516)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 445 (516)
.+.. + ....+.+.........+.....+...+++.|..|+++|+++.++......+|..+++.+.+.
T Consensus 86 ~~~~------------~-~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 86 AFCP------------P-HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HhcC------------c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5420 1 12222222222223344444556677888899999999999999999999999999999998
Q ss_pred HHhh-cchhhHHHHHHHHHHHHHHHhhcccCC
Q 010185 446 MLCH-FKFGLFFFFAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 446 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (516)
+.+. .+|...+.+.++..+...+..+..+|+
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8885 477666655554444444444555554
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=99.42 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=94.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
-+...+|.+-+.+++..++.++..|.++||+|||.++.++.+..++..++.+.. ... ..+...
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S----------------~~F-~afv~a 127 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS----------------RNF-AAFVLA 127 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH----------------HHH-HHHHHH
Confidence 345677899999999999999999999999999999999999888877776652 222 233332
Q ss_pred HHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC 448 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~ 448 (516)
=+.++..-+...+..++++|+++++.|+.+++..+....+|-++||.+.|++..
T Consensus 128 R~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 128 RFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 233333444456778899999999999999999999999999999999999887
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=110.46 Aligned_cols=159 Identities=10% Similarity=-0.090 Sum_probs=115.0
Q ss_pred HHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHH
Q 010185 291 PFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLA 370 (516)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 370 (516)
..+.............+.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.++.++++++.++.++..+
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 33444333444555567777789999999999999999999999999999999999999999999999999988876543
Q ss_pred HhcCCCCC-------------------C------------Ccc--c--chhHHHHHHHHHHHHhhhcCcccccceeeccc
Q 010185 371 LKFGLRGE-------------------G------------TLT--K--FDADFVLFLICAYVAAFAWSWGPLGWLVPSEV 415 (516)
Q Consensus 371 ~~~~~~~~-------------------~------------~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (516)
........ . ... . ...+..+++.-++.+.......++...++.|.
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~ 200 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF 200 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence 21100000 0 000 0 01122333333344444444567778999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 416 CALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 416 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-09 Score=101.24 Aligned_cols=140 Identities=15% Similarity=0.004 Sum_probs=108.5
Q ss_pred cCCchhHHHHHHHHHH-HHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh------chhhhHHHHHHHhhhhccc
Q 010185 76 KFDSQLLTLFTSSLYL-AALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA------AVNIAMLIIGRLMLGVGVG 148 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~ 148 (516)
|+++++.|++...... ...++.++.|++.||+|+|+++..+.++.++..+.... .++.+.+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 8899999999888764 66778999999999999999998877766443333221 2333445555666777777
Q ss_pred ccccchhhhhhccCCc-CccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHh
Q 010185 149 FANQVVPVYLSEMAPA-KVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVG 218 (516)
Q Consensus 149 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 218 (516)
...+...+.+.+..++ +++++.++..+...++|..++|.+++.+.+.. ||+..|++.+++.++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHH
Confidence 7778888887777776 78899999999999999999999999887544 8999998888776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=102.53 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=106.4
Q ss_pred hHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010185 299 INVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378 (516)
Q Consensus 299 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (516)
.+.+..+.+.+.+++|++..+.+.+.... .......++.|++.||+|+|+++.++.++..++.++.++....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~------- 114 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE------- 114 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 45666778888888999999988877663 3334556678999999999999999999999999887763110
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH
Q 010185 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF 458 (516)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~ 458 (516)
.-..+.+...+..++.+.+.+ ...+.....+.+.+| +.||++.|+......+|+++.+.+...+........++..
T Consensus 115 --~i~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 115 --VIEGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred --cccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 000112222222222222221 222333444567887 7899999999999999998766666555442222445555
Q ss_pred HHHHHHHHHHHhhcccCC
Q 010185 459 AGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (516)
+.+..+++++.+.+++.+
T Consensus 191 ~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 191 MSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHhheeCC
Confidence 555555556555555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=100.71 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=101.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHhhhhcccccccchhh
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-VNIAMLIIGRLMLGVGVGFANQVVPV 156 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 156 (516)
+..+.+++.+...++..++.+++++++||+|||+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999999988888777765 46677788889999999999999999
Q ss_pred hhhccCC-------cCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010185 157 YLSEMAP-------AKVRGALNIGFQMAITIGILIANLVNYGTAKI 195 (516)
Q Consensus 157 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~ 195 (516)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45679999999999999999999988876543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=89.78 Aligned_cols=134 Identities=10% Similarity=0.094 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCc
Q 010185 325 VITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSW 404 (516)
Q Consensus 325 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (516)
....++.+++.++.+++.||++||+.+..+.....++.+..... .+.+.......+.+.+. ...
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~-~~~ 68 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---------------SNITVLIIARFLQGFGA-AFA 68 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHH-HHH
Confidence 34567788899999999999999999988877777666655442 12222333333333222 233
Q ss_pred ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH-HHHHHHHHHHHhhccc
Q 010185 405 GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF-AGFVAVMTVFVFYMVP 474 (516)
Q Consensus 405 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 474 (516)
.+....+..|.+|++.|+++.++.+....++..++|.+.+.+.+..++...+.. .....+..+..++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 456667778999999999999999999999999999999999988777544444 4444444444444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-08 Score=98.02 Aligned_cols=146 Identities=13% Similarity=0.191 Sum_probs=119.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhchh--------hhHHHHHHHhhhh
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAVN--------IAMLIIGRLMLGV 145 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~ 145 (516)
+|++.+....+...+....-+..+++|+++|++ ||++.+.++.++..++..+.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 377889899999999988899999999999985 9999999999999999988877521 2346677888999
Q ss_pred cccccccchhhhhhccCCcCc---cchhHHHHHHHHHHHHHHHHHHHhhhcccc----CCcchhHHHHHhHHHHHHHHHh
Q 010185 146 GVGFANQVVPVYLSEMAPAKV---RGALNIGFQMAITIGILIANLVNYGTAKIS----GGWGWRVSLALAAVPAILMTVG 218 (516)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~----~~~~wr~~f~~~~~~~~~~~~~ 218 (516)
|.|+.-++..+...|.+++++ |-..+.++..+.++|.++++++...+.... ...+|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999997643 567888999999999999988877665332 2347999999988887776655
Q ss_pred hc
Q 010185 219 SF 220 (516)
Q Consensus 219 ~~ 220 (516)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 43
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=113.14 Aligned_cols=146 Identities=10% Similarity=0.030 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHH
Q 010185 318 EASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYV 397 (516)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (516)
...++..+...+..++..++.|+++||++||+++........+...+...... ..+...+++..+..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------------~~s~~~l~~~~~l~ 118 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------------LNSVPLLFAALFLM 118 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHH
Confidence 44677777888899999999999999999999764322222222211111110 02223333333444
Q ss_pred HhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCC
Q 010185 398 AAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (516)
+.......|...+++.+.+|++.++.++|+.++...+|..++|.+.|.+.+..++...++..++..+.+.++.+.++++
T Consensus 119 gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 119 GIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4444455778888889999999999999999999999999999999999998887766655555555555555555544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=99.96 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHH-HHHH-----HHHHHHHhHhHhhhhcccCCchHHHhhhHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMS-AVIT-----GVVNVVATLVSVFSVDKFGRRVLFLEGGVQ 357 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 357 (516)
.....++..+....-...+....|.+.++++.++.+.+.. .+.. .+...++.++.|++.||+|||+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 4455555566666666778888999989988877654332 2221 222346788999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHH
Q 010185 358 MFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTF 437 (516)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 437 (516)
..++.+++.+..... ..........++.-++.+.+.+ ...+....++.|.+|++.|+++.++.+...+++..
T Consensus 96 ~~~~~~l~~~~~~~~-------~~~~~~~~~l~~~R~l~G~~~g-~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 96 MASGTLLIAFVPGYA-------TIGLAAPLLVLLGRLLQGFSAG-VELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred HHHHHHHHHhCCcHH-------HHHHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 888877776521000 0000000011111122222222 22344457788999999999999999988888887
Q ss_pred HHHHHhHHHH--------hhcchhhHHHHHH
Q 010185 438 VVGQVFLSML--------CHFKFGLFFFFAG 460 (516)
Q Consensus 438 i~~~~~~~~~--------~~~g~~~~~~~~~ 460 (516)
+++.+.+.+. +..+|...+.+..
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 7777766552 3556765555543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=98.18 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=107.9
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc-----CCchHH-HhhhHHHHHHHHHHHHHHHHhcC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF-----GRRVLF-LEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
......|.+.++.|+|.++.++.... .+...+ .++.|+++||+ |||+.+ ..+.+..+++...+.+.
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~------ 77 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL------ 77 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC------
Confidence 45556788899999999999988655 444444 88999999998 788865 44555555554444331
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc---
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK--- 451 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g--- 451 (516)
.+ ......+....+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 78 ------~~-~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 78 ------VP-STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred ------Cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 01 11222222222222233333345566778899999999999999999999999999999999888877
Q ss_pred -----hhhHHHHHHHHHHHHHHHhh-cccCC
Q 010185 452 -----FGLFFFFAGFVAVMTVFVFY-MVPET 476 (516)
Q Consensus 452 -----~~~~~~~~~~~~~~~~~~~~-~~~~~ 476 (516)
|...+.+.++..+...+..+ ..+|+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 76666666665555554433 34554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=99.39 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=136.2
Q ss_pred HHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHH
Q 010185 34 GLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSM 113 (516)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 113 (516)
.+-+.+|+.. +.|-+.++++. +.++...|.+.+...+.-++.-.+..++.+|+|.|+.+
T Consensus 234 ~~Y~vfdqqf-------~~y~~~~f~~~--------------~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L 292 (412)
T PF01306_consen 234 AIYDVFDQQF-------PIYFASFFQSA--------------GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL 292 (412)
T ss_dssp HHHHHHHHHH-------HHHHHHTSSSH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHhccc--------------ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH
Confidence 4666777653 45566665433 34667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhh
Q 010185 114 TVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGT 192 (516)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~ 192 (516)
+++..++++=.++++++++.+.+.+.+.+.|+-.+........|+++.+|+|-..+...+ .+.+.++|..+.+.++|.+
T Consensus 293 llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 293 LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 999999999999999999999999999999999999999999999999998877666666 4678889999999998887
Q ss_pred ccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 193 AKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 193 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
.+.. |.+..|++.+.+.++..++..+ +++.+
T Consensus 373 yd~~---G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 373 YDRI---GFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred Hhhc---CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 7554 8999999988887776666555 65543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=98.52 Aligned_cols=147 Identities=7% Similarity=-0.057 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHH
Q 010185 288 TLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGI 367 (516)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 367 (516)
..+.++.............|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~ 110 (438)
T PRK10133 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555667777889888889999999999999999999999999999999999999999999998888876532
Q ss_pred HHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 368 MLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
... .++.+..+...++.+.+.+.. .+....++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 111 ~~~------------a~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 111 AAE------------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHh------------cCCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 012222333333333333322 3344445557767666666889999999999999998876554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=116.20 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=118.6
Q ss_pred cCCch-hHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 76 KFDSQ-LLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 76 ~~s~~-~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
|.+.. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 77888 99999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHH
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAIL 214 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~ 214 (516)
.+++.+..|+++|++++++.+....+|.++++.+++.+... ..++...|++.+.+.++
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887766432 12566666665554433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-06 Score=82.13 Aligned_cols=335 Identities=11% Similarity=0.028 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc--------h----hhhHH---HHHHHhhhhccc-ccc
Q 010185 88 SLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA--------V----NIAML---IIGRLMLGVGVG-FAN 151 (516)
Q Consensus 88 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~----~~~~l---~~~r~l~G~~~~-~~~ 151 (516)
.-.+...+.++..|.+.||..|.+++..+++..-++..+.+.. + +-+.. ++.-.+.|.-.- ...
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3345667888889999999999999888766654443333221 1 11222 222222222111 112
Q ss_pred cchhhhhhccCC------cCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc----
Q 010185 152 QVVPVYLSEMAP------AKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF---- 221 (516)
Q Consensus 152 ~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~---- 221 (516)
....+.=.||.. ++.+.+..+...-.--+.-+++|++.+.+.... +.+...++.++..++..+.=.+
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~---s~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA---SPVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233355542 334456666666666778899999977776543 6777776666666655443111
Q ss_pred C-CCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhH
Q 010185 222 L-PDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGIN 300 (516)
Q Consensus 222 ~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (516)
+ ...| .+..+++.++.....+.. ...+.+.+....+...+.-++....|+..++.+....-+...++++. ..
T Consensus 203 VY~~~P-~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VL---- 275 (432)
T PF06963_consen 203 VYNSVP-ALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VL---- 275 (432)
T ss_pred HHHhCh-HhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-Hh----
Confidence 1 2223 222222222211110000 00000011111111111222234556666654433333332222221 11
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGT 380 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (516)
.+......|+...|+++...+..-....+.++.++++..++.+|+|..+.-..+......++.+........
T Consensus 276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~-------- 347 (432)
T PF06963_consen 276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAP-------- 347 (432)
T ss_pred cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 123344455566799999999999999999999999999999999998887777766655555544433221
Q ss_pred ccc--chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 010185 381 LTK--FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVG 440 (516)
Q Consensus 381 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 440 (516)
.++ ......++......=..-.++-....-+..|..|+++||...|.-+...++...+--
T Consensus 348 ~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 348 GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111 111111111111111111222234445667899999999999999988887765543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=98.60 Aligned_cols=134 Identities=7% Similarity=-0.045 Sum_probs=97.8
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
.......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.. ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence 345567888899999999999999999999999999999999999999999988877666555443 21
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK 451 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g 451 (516)
++.+..+....+.+.+.+.. .+.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAII-NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHH-hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12222222222222222221 2333445567776 689999999999999999999999888877653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=96.97 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhh
Q 010185 321 LMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAF 400 (516)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (516)
+...+...+++++|++..++++||+|||..+.+..++..++.+++...... +.....++.=++.+...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~------------~~~e~li~GR~i~Gl~~ 130 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA------------PSFEMLILGRLIVGLAC 130 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHh
Confidence 456677889999999999999999999999998888888887777764332 22223333333333333
Q ss_pred hcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHh-HHHHhhcc-hhhHHHHHHHHHHHHHHHhhcccCCCC
Q 010185 401 AWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVF-LSMLCHFK-FGLFFFFAGFVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 401 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (516)
+.. ......++.|+.|++.||....+......+|..++..+. ..+.++.. |...+.+..+..+...+...+.||..+
T Consensus 131 gl~-~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 131 GLS-TGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHH-HHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 333 345567788999999999999998888888888885543 33443332 566666666666777777788888654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=92.95 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=104.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
+|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999988888888776666554433 345568899999999999
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhH
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAA 209 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~ 209 (516)
.+...+..|++ .+++.++. ....+|.++.|++.|.+.+.. |.+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~---g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL---GIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc---cchHHHHHHH
Confidence 99999988764 55666765 556789999999877766543 7778777443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=94.20 Aligned_cols=135 Identities=30% Similarity=0.465 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchh--hhHHHHHHHhhhhcccccccchhhh
Q 010185 80 QLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVN--IAMLIIGRLMLGVGVGFANQVVPVY 157 (516)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~ 157 (516)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999999999888777777777777776 9999999999999999999999999
Q ss_pred hhccCCc-CccchhHHHHHH-HHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHH
Q 010185 158 LSEMAPA-KVRGALNIGFQM-AITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILM 215 (516)
Q Consensus 158 i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~ 215 (516)
+.|++|+ ++|+...+.... ...+|.++++.+++.+... ...+||+.|.+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 9999997 678999999888 5888999999887776655 5568999777666655443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8e-08 Score=95.60 Aligned_cols=118 Identities=10% Similarity=0.095 Sum_probs=97.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhhhcccccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
|.++...++......++..++.+++++++||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 54555555555555678889999999999999999999999999888888777653 6777778888999999999999
Q ss_pred hhhhhhccCCcC-------ccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010185 154 VPVYLSEMAPAK-------VRGALNIGFQMAITIGILIANLVNYGTA 193 (516)
Q Consensus 154 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 193 (516)
..++.+|..|.+ ++|...+..+....+|..+++.+.+.+.
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 3588999999999999999998877654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.2e-08 Score=93.71 Aligned_cols=160 Identities=11% Similarity=-0.006 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhc----ccCCchHHHhh-hHHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVD----KFGRRVLFLEG-GVQM 358 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~~~ 358 (516)
++.........+ .++.....+.+.+++++|.++...+.......+..++..++.|+++| |+|||+.++.+ ....
T Consensus 6 li~~~~~~~Giq-~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQ-FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 333333333333 34556666677788899999999999999999999999999999999 59999988765 4444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccchh---HHHHHHHHHHHHhhhcCcccccceeecccCchhhh--hhhHHHHHHHHH
Q 010185 359 FICQCLVGIMLALKFGLRGEGTLTKFDA---DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIR--SAGQAINVSTNM 433 (516)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~ 433 (516)
.+++.++............. ....... +..+....+........ .+...++++|..|+++| +.+.++.+....
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~-~~~~~~~~~i~~~~i~~~lld~~~n~~-~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDN-LDKKTKPRAIIVFVVGFWILDVANNML-QGPCRAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHhCchhhhhcccc-ccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence 44444444321100000000 0000011 11122222222222222 23445778899998865 578999999999
Q ss_pred HHHHHHHHHhHHH
Q 010185 434 IFTFVVGQVFLSM 446 (516)
Q Consensus 434 ~g~~i~~~~~~~~ 446 (516)
+|+.+++.+.+..
T Consensus 163 lG~ilg~~~g~~~ 175 (477)
T TIGR01301 163 IGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=103.25 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=133.4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhc--hhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYG--RKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..++++..+++.+.++++++++.+...-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988 667788899999999999999999999999999999999999988
Q ss_pred hhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCC
Q 010185 154 VPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLP 223 (516)
Q Consensus 154 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 223 (516)
....+.|..+.++-..+.|+.....+++.++||++++.+.+..+ +|...|+..++..++...+++..|
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 88899999999999999999999999999999999997776664 588999999988888777776665
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-06 Score=79.43 Aligned_cols=116 Identities=5% Similarity=0.009 Sum_probs=89.8
Q ss_pred CchhHHHHHHHHHHHHHHH-HHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc----h---------------------
Q 010185 78 DSQLLTLFTSSLYLAALVA-SFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA----V--------------------- 131 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--------------------- 131 (516)
+...+.++-+...+...+. .++.+++++|++|++++.+....+.+...++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467889999888877766 9999999999999999999888888777777665 1
Q ss_pred ------hhhHHHHHHHhhhhccccccc-chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010185 132 ------NIAMLIIGRLMLGVGVGFANQ-VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193 (516)
Q Consensus 132 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 193 (516)
+.|...+..+...+-...... .-..++.|.++.+|-.|..++...+.++|.++++.+...+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444444444444 56788999999999999999999999999999998877665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-09 Score=98.34 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=92.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhh----hchhHH-HHHHHHHHHHHHHHHHhchhhh----------------
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRM----YGRKMS-MTVGGISFLIGAIINGAAVNIA---------------- 134 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~~~---------------- 134 (516)
|++....+.+--+..+...+.+|+.|..+|| |||||. +..+.+..+++.++.+++.++.
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 7788888888888899999999999999995 898655 5557777778888888875543
Q ss_pred -HHHHHHHhhhhcccccccchhhhhhccCCcCccch-hHHHHHHHHHHHHHHHHHHHhhh
Q 010185 135 -MLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGA-LNIGFQMAITIGILIANLVNYGT 192 (516)
Q Consensus 135 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~i~~~~ 192 (516)
.++++--+.=++.-.....+-+++.|...++++.+ +++++....++|..+|..++.+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 44444455555666788889999999998777766 99999999999999998887643
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-09 Score=96.65 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=115.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
.+-+..+.|++++...+..++.+++.|.+.||+|+|..+++++..+..+.+++++. +....+++
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg----------------~sy~~l~v 164 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG----------------NSYPMLFV 164 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc----------------chhHHHHH
Confidence 35567788999999999999999999999999999999999999999999999883 33334444
Q ss_pred HHHHHHhhhcCcccccceeecccCchhh-hhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhh-HHHHHHHHHHHHHHHh
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEI-RSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGL-FFFFAGFVAVMTVFVF 470 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 470 (516)
.=...+..+........+++++.+|++. |++++|+.-.+..+|-.++|++.|.+++..|+.. +.+++.++++-+.+-+
T Consensus 165 AR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l 244 (464)
T KOG3764|consen 165 ARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQL 244 (464)
T ss_pred HHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHH
Confidence 4344444344445566678889999776 6999999999999999999999999999999654 5555555555555555
Q ss_pred hcccCCC
Q 010185 471 YMVPETR 477 (516)
Q Consensus 471 ~~~~~~~ 477 (516)
+.++.++
T Consensus 245 ~vi~p~~ 251 (464)
T KOG3764|consen 245 LVIEPTE 251 (464)
T ss_pred heeCccc
Confidence 5554433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=91.87 Aligned_cols=149 Identities=15% Similarity=0.265 Sum_probs=120.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-hhhhHHHH----HHHhhhhcccccc
Q 010185 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-VNIAMLII----GRLMLGVGVGFAN 151 (516)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~ 151 (516)
.+....+.+.++..+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888999999999999999999999999999999999898887 55544333 3567999999999
Q ss_pred cchhhhhhccCCcCccchhHHHHHHH-HHHHHHHHHHHHhhhccccCC---cchhHHHHHhHHHHHHHHHhhcc-CCCC
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMA-ITIGILIANLVNYGTAKISGG---WGWRVSLALAAVPAILMTVGSFF-LPDT 225 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~i~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~~~~-~~e~ 225 (516)
.+...++.+..|++.|+++.+++... .++|..+|..++|.+.+..+. +.|...+.+.+++.++..+++.+ ++|+
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999998764 689999999999988765432 34666777777766666555444 5553
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-08 Score=86.29 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=118.9
Q ss_pred HhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcC
Q 010185 295 QFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFG 374 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (516)
.....+.+..|.|.+.+++|++..+...+.....++..+| ++.|.+.|++|++..+.++.....++..++......
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~--- 89 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG--- 89 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3445677889999999999999999999988888888775 889999999999999999999999999887664321
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCc-ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchh
Q 010185 375 LRGEGTLTKFDADFVLFLICAYVAAFAWSW-GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFG 453 (516)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~ 453 (516)
. -.....+.+++..+..+.+.++ .........+.+| ++||++.|+.-....+++++-..+...+.+.....
T Consensus 90 -----~--i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 90 -----R--IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred -----c--cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 0 0112333444444444444333 2222333347888 68999999999999999999998888777663334
Q ss_pred hHHHHHHHHHHHHHHHhhcccC
Q 010185 454 LFFFFAGFVAVMTVFVFYMVPE 475 (516)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~ 475 (516)
.....+....+++++...+++.
T Consensus 162 fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHHHHHHhhheec
Confidence 4444455455555555444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=88.36 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccC
Q 010185 83 TLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMA 162 (516)
Q Consensus 83 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 162 (516)
+.+.-+-.+...+..+.+.+..+|+..+.=...+.+++.++.++.+++++.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666777777888889887655566777788899999999999999999999999999988888877644 55
Q ss_pred CcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCC
Q 010185 163 PAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPD 224 (516)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 224 (516)
++ ...+-+..|.+.+.++|+..-..+.. -..+-|..+++...+.++..+..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 35788888888888888876554554 1224577777776666555555444 554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=94.18 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=116.2
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
++++++.+-+++.+....+.+++.+..+++.||+|-|+++..+.++.+++.++.+..... ..+ .++
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-------------~~~-~~~ 132 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-------------GFY-LLL 132 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-------------cch-hhH
Confidence 357788899999999999999999999999999999999999999999999998886432 222 333
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh-cchh-hHHHHHHHHHHHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH-FKFG-LFFFFAGFVAVMTVFV 469 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~ 469 (516)
+.=.+.+.......|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||. .+++.+++.++..++.
T Consensus 133 ~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w 212 (466)
T KOG2532|consen 133 VLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILW 212 (466)
T ss_pred HHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 3333333333344566777778999999999999999999999999999999999998 8875 4555555555555554
Q ss_pred hhcccC
Q 010185 470 FYMVPE 475 (516)
Q Consensus 470 ~~~~~~ 475 (516)
+++..+
T Consensus 213 ~~~~~d 218 (466)
T KOG2532|consen 213 FLFYSD 218 (466)
T ss_pred HHHhcC
Confidence 444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-08 Score=83.40 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=108.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHH-HHHHHHHHHhchhhhHHHHHHHhhhhcccccc
Q 010185 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS-FLIGAIINGAAVNIAMLIIGRLMLGVGVGFAN 151 (516)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 151 (516)
+.+|+|+...+-+.+.-..-.++.+++.|.++||+|++-..+.+..+ +.++.....| +++.=+.+..+.|+......
T Consensus 293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllA 370 (459)
T KOG4686|consen 293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLA 370 (459)
T ss_pred HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHH
Confidence 33499999999999999999999999999999999999877765444 4444444433 33444566778888877666
Q ss_pred cchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhH-HHHHHH
Q 010185 152 QVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAA-VPAILM 215 (516)
Q Consensus 152 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~-~~~~~~ 215 (516)
......++...|+++.|++.+..+...++|..+.|++++++.+..+.+.|--.|++.. .+++..
T Consensus 371 cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 371 CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 6677788889999999999999999999999999999999987766566766665544 344433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-08 Score=96.54 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=91.9
Q ss_pred HhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 304 FYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 304 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
..++.+.++.|-++. ..++.....+...+..++.|+++|.+|||+.++.+.++..++.++.+..
T Consensus 65 ~~l~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------------- 128 (599)
T PF06609_consen 65 SILPYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------------- 128 (599)
T ss_pred HHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC---------------
Confidence 345666777876644 4677788889999999999999999999999999999988888887652
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFF 457 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~ 457 (516)
++....+....+.+.+ .+...+....++|..|.+.|..+.++.....-....+++.+...+..+.+|.+.+.
T Consensus 129 ~~~~~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred CcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 1222222233333332 33333445557899999999888777665554545566666666555555654333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-08 Score=91.61 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=127.9
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHH-HHHHhcC----CCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhh
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAP-VLFKTIG----FGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGG 355 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~ 355 (516)
|.++.+...-+.--++ ++.+...+. |+..+.+ ++.+++.-....++...-+..+++||++||+ |+|+.+..+.
T Consensus 21 r~l~~if~vE~WERFs-yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFS-YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3445554444433333 344443333 4444455 9999988888888888888899999999995 9999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchh--hhhhhHHHHHHHHH
Q 010185 356 VQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE--IRSAGQAINVSTNM 433 (516)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~ 433 (516)
++++++.+++.... ......+..............=+...+++.|++|++ .|..+.++.++..+
T Consensus 100 il~~iGh~~L~~~~--------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN 165 (498)
T COG3104 100 ILMAIGHLVLAISS--------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN 165 (498)
T ss_pred HHHHHHHHHHhccc--------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEee
Confidence 99999999988720 011222222222233333344566677888998754 35677888888899
Q ss_pred HHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccC
Q 010185 434 IFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPE 475 (516)
Q Consensus 434 ~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (516)
+|+.++|.+.+++.++.+|...+..+++....+++.+...++
T Consensus 166 iGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999898888888888887776654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=86.03 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccch
Q 010185 90 YLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGA 169 (516)
Q Consensus 90 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 169 (516)
.+.-.-|.++.+++.||+|||+.+..+.+++++..++...+.+-..+.+.-+..-++..+.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34566788999999999999999999999999999988877554433333333333445567788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 170 LNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 170 ~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
..|..+...-+|.++.|+++. .... +-..+..+.+...++..++..++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA~-~~e~----s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAM-RAEL----STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHH-Hhcc----ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999982 2211 233455666677777777777776433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=95.79 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=112.2
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 311 KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 311 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
+....+.....+..++..++..+|.++.|.++||+|||+++..+.++..++.++.++. .+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----------------~~~~~~ 174 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----------------PNYWMF 174 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----------------CcHHHH
Confidence 3446677778888999999999999999999999999999999999998888777662 334444
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHh
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVF 470 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (516)
...-.+.+.+..+...+.+.+..|..+++.|+.+..+ ......++.+++...+++.. +|........+..+..++.+
T Consensus 175 ~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 175 LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLW 251 (521)
T ss_pred HHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566777888899999999999999 88889999999999998887 55555555444444444445
Q ss_pred hcccCCC
Q 010185 471 YMVPETR 477 (516)
Q Consensus 471 ~~~~~~~ 477 (516)
++.+|.+
T Consensus 252 ~l~~Es~ 258 (521)
T KOG0255|consen 252 FLPPESP 258 (521)
T ss_pred HccCcCh
Confidence 5555643
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-08 Score=95.37 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=121.4
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc----------hhhhHHHHHHHh
Q 010185 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA----------VNIAMLIIGRLM 142 (516)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 142 (516)
+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+...+. ++.+..+..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 3468999999999999999999999999999999999999999999999988665321 444456666789
Q ss_pred hhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccC----CcchhHHHHH-hHHHHHHHHH
Q 010185 143 LGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISG----GWGWRVSLAL-AAVPAILMTV 217 (516)
Q Consensus 143 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~----~~~wr~~f~~-~~~~~~~~~~ 217 (516)
.+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+..+ +++.++...+ ..+..++...
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876543 2333444333 3333444444
Q ss_pred hhccCCC
Q 010185 218 GSFFLPD 224 (516)
Q Consensus 218 ~~~~~~e 224 (516)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4446885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-07 Score=81.17 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
+..|.+.+...+-++.+....++. |++..|- |+|..+.|++.+...+.....++..
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WL------P~ili~~------------------G~sa~~aG~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWL------PAILIDR------------------GLSAAEAGSLLSLMQLAQLPTALLI 263 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHH------HHHHHHc------------------CCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 345666655555555555544442 4444443 8999999999999999999999999
Q ss_pred HHHHhhh-chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCcc-chhHHHHHHHH
Q 010185 101 SVVTRMY-GRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVR-GALNIGFQMAI 178 (516)
Q Consensus 101 g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~ 178 (516)
..+++|. .+|+..+...+++.++.+.+.+.+.-..++- -++.|+|.|..++.....+.+-.++.++ ++..++.+...
T Consensus 264 P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 264 PLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 9999975 6788888888888899888888765544444 4999999999999999999998875544 56666666666
Q ss_pred HHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhc
Q 010185 179 TIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSF 220 (516)
Q Consensus 179 ~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 220 (516)
.+=...||.+.|++.+..+ +|+..........++..+.-+
T Consensus 343 YllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence 6666778999888887766 899888777776666555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=86.46 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
+++...+.......++.++|+++.|++.||+|||+++...++++.++.++.+... ..+.....+..++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~------------~~~~~~~~m~~L~ 148 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV------------GTTSPLGVMMTLC 148 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC------------CCCCCcchhhHHH
Confidence 5666778888999999999999999999999999999999988888888555421 1122212222222
Q ss_pred HH--HHhhhcC-cccccceeecccCchhhhhhhHHHHHHHHHHHH
Q 010185 395 AY--VAAFAWS-WGPLGWLVPSEVCALEIRSAGQAINVSTNMIFT 436 (516)
Q Consensus 395 ~~--~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 436 (516)
++ ..+++.+ =.|+..+..+|....+.||+-.+........|.
T Consensus 149 ~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 149 FFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred HHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 22 2233332 268888899999999999987776555544443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-07 Score=90.07 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhhhcccccccchhhh
Q 010185 80 QLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLGVGVGFANQVVPVY 157 (516)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 157 (516)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999998886 99999999999999999999999999
Q ss_pred hhccCCc-------CccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010185 158 LSEMAPA-------KVRGALNIGFQMAITIGILIANLVNYGTAK 194 (516)
Q Consensus 158 i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 194 (516)
++|..+. ++.|..++......-+|..+++.+.+.+..
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999873 334888999999999999999888776543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-07 Score=90.10 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=94.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----chhhhHHHHHHHhhhhccccccc
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA-----AVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777899999999999999999999999888877766655532 35567777888899999999999
Q ss_pred chhhhhhccCC-------cCccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010185 153 VVPVYLSEMAP-------AKVRGALNIGFQMAITIGILIANLVNYGTAK 194 (516)
Q Consensus 153 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 194 (516)
...++++|..+ +++.|..++......-+|..+++.+.+.+..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 2333668899999999999999888776653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.8e-07 Score=81.70 Aligned_cols=144 Identities=10% Similarity=-0.022 Sum_probs=112.4
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 371 (516)
++.+...........|.+.+.++.+..+++++......+..+.++..+++.+|+|+|+-++.++.++++++.++.-..
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-- 99 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-- 99 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--
Confidence 444444445556677888888999999999999999999999999999999999999999999999999998886421
Q ss_pred hcCCCCCCCcccchhHHHHHHHHHHHHhhhcCc-ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 372 KFGLRGEGTLTKFDADFVLFLICAYVAAFAWSW-GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
........+..++..+.+.+. .+....++..+.|++..+.-+.+.+.++.+|++++|.+.+.+..+
T Consensus 100 ------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 ------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred ------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 123333444444444444443 345566777888888888889999999999999999999998873
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-07 Score=80.58 Aligned_cols=342 Identities=9% Similarity=0.044 Sum_probs=199.6
Q ss_pred cCCchhHH-HHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccch
Q 010185 76 KFDSQLLT-LFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 76 ~~s~~~~~-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
|++..+.. -+.=...-.+.+.-.+.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+ ...+-
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAY 115 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAY 115 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhh
Confidence 55555543 22233344566667777789999999999999888888888888899999999999999999876 55677
Q ss_pred hhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCC
Q 010185 155 PVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGH 234 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 234 (516)
++++-+..+|+++.++.+...+..-.|-..|..++-.+... +..++...-.+...-..+......++|..+|.+..+++
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 88999999999999999999999888888888887766644 22345555555555555556667778877766655544
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcC
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIG 314 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (516)
.++.. ..+....+. +.+..+..+ ..-......+.+..+++. .....+-+....++++-...|...+.++..
T Consensus 195 ~~~~~--v~~~e~~~~-~~~~~~~l~--~~~~~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~ 265 (433)
T KOG3810|consen 195 EDKIS--VGDLEEMNP-QASYMSYLR--GAFVLLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEVA 265 (433)
T ss_pred cccce--eccchhcCc-cchhhHHHH--HHHHHHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhhC
Confidence 44211 000000000 000000000 000000112222222222 112222233444566677778877777653
Q ss_pred C--CchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 315 F--GAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 315 ~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
- .....|..=++..+.++++.+..|.+.-++.|..-+.++..-...+.+++.. ...++-|.....
T Consensus 266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m-------------~~t~~Iw~~Ya~ 332 (433)
T KOG3810|consen 266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM-------------AQTQHIWVCYAG 332 (433)
T ss_pred CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh-------------hcccceehhhhh
Confidence 1 1122355556677778888888998876666653333322211111111111 112344445555
Q ss_pred HHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 010185 393 ICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
..++...+.... ++....+++....+.-|...|+..+..-+-..+...+
T Consensus 333 yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 333 YVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred HHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 555555555443 3333334455566778999999877666655554444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.5e-07 Score=90.07 Aligned_cols=142 Identities=14% Similarity=0.046 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHH
Q 010185 319 ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVA 398 (516)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
+.+++.+...++..++.++.|+++|++|||+.+.++.+...++.++.... .+.....+.=++.+.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---------------~~~~~l~~GR~l~G~ 154 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---------------PSWYQLIVGRILTGL 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHhcc
Confidence 34799999999999999999999999999999999999999999988873 122222332233333
Q ss_pred hhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc--chhhHHHHHHHHHHHHHHHhhcccCC
Q 010185 399 AFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF--KFGLFFFFAGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (516)
+.+ +...+...+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+..+...+..++.||.
T Consensus 155 g~G-~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 155 GVG-GASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred chh-hhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 322 3345667888999999999999999998888776666 6666666553 67666666666655555556677765
Q ss_pred C
Q 010185 477 R 477 (516)
Q Consensus 477 ~ 477 (516)
.
T Consensus 233 p 233 (513)
T KOG0254|consen 233 P 233 (513)
T ss_pred h
Confidence 3
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-10 Score=109.84 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHH
Q 010185 319 ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVA 398 (516)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
..++..+...++.++|.++.|++.||+|||+.+..+..+..++.++..+.. . ..+...+...-.+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~------------~-~~~~~~~~~~R~~~G 113 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP------------S-YNNFWMLLIGRFLIG 113 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc------------c-ccccccccccccccc
Confidence 457888999999999999999999999999999999998888888877631 0 012223333323333
Q ss_pred hhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh---cchhhHHHHHHHHHHHHHHHhhcccC
Q 010185 399 AFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH---FKFGLFFFFAGFVAVMTVFVFYMVPE 475 (516)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 475 (516)
....+..+....++.|..|++.|+...++.+....+|..++..+.-..... ..|...+.+..+..+...+...++||
T Consensus 114 ~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pE 193 (451)
T PF00083_consen 114 FGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPE 193 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333334567778889999999999999998888877777766554333222 23566666666555555555667777
Q ss_pred CC
Q 010185 476 TR 477 (516)
Q Consensus 476 ~~ 477 (516)
..
T Consensus 194 SP 195 (451)
T PF00083_consen 194 SP 195 (451)
T ss_pred cc
Confidence 53
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-06 Score=75.64 Aligned_cols=358 Identities=15% Similarity=0.079 Sum_probs=175.4
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHh--
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTR-- 105 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-- 105 (516)
....+.....|...+..+ ++|-+.+.= |+|-++.+...-++. -..--+.|.++.|
T Consensus 34 llLl~LYllQGiP~GL~~---~iP~lL~ak------------------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~ 90 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG---AIPLLLQAK------------------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSV 90 (510)
T ss_pred HHHHHHHHHcCCchhHhh---hhHHHhcCC------------------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHH
Confidence 334444677788887776 336555522 556666654433221 1233568899999
Q ss_pred ---hhchhHHHHH-HHHHHHHHHHHHHhc-----------hhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchh
Q 010185 106 ---MYGRKMSMTV-GGISFLIGAIINGAA-----------VNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGAL 170 (516)
Q Consensus 106 ---r~Grr~~~~~-~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 170 (516)
|+||||.-++ +..+.+....+.+.. ++...+...-++.-+..+.--.+.-.+.-.+..+++.|.+
T Consensus 91 y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya 170 (510)
T KOG3574|consen 91 YSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA 170 (510)
T ss_pred HHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence 9999875443 555444444444432 3333444444556666666666667777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccC-------Ccchh---------HHHHHhHHHHHHHHHhhccCCCChHHHHhcCC
Q 010185 171 NIGFQMAITIGILIANLVNYGTAKISG-------GWGWR---------VSLALAAVPAILMTVGSFFLPDTPNSILERGH 234 (516)
Q Consensus 171 ~~~~~~~~~~G~~i~~~i~~~~~~~~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 234 (516)
......+...|..++..+ +....+ -.+|. ...++.+...++.-.+..+..+++..
T Consensus 171 ST~q~Vg~~~GyfL~~~i---fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~------ 241 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVV---FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE------ 241 (510)
T ss_pred hHHHHHHHhhhHHhhcce---eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch------
Confidence 777777777777777655 222211 01221 12223333333333333333333200
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCc---hhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHP---WTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFK 311 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (516)
+ + .++.+...+.. .+++++.+. +.+...+.. ..=.++..-....+.-+-
T Consensus 242 --~-------------~---------~~e~~~~i~~~yk~l~~vLklk~---v~~la~i~l-t~K~gf~a~da~t~LkLl 293 (510)
T KOG3574|consen 242 --S-------------V---------DEELELGIHESYKLLRDVLKLKS---VRWLAGILL-TGKLGFQAADALTSLKLL 293 (510)
T ss_pred --h-------------h---------hhhhhcCHHHHHHHHHHHHcCcc---HHHHHHHHH-HHHHHhhhhhhccchHHH
Confidence 0 0 00000111122 233333322 222222211 122233344445566667
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHH--hh---hHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFL--EG---GVQMFICQCLVGIMLALKFGLRGEGTLTKFDA 386 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (516)
++|++..+.++...+..-..++.....|++..+ +|++.. -+ -++.+.....+.+..-.. ... ++. -+...
T Consensus 294 e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~--~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~-~~~-~G~-~~~~~ 368 (510)
T KOG3574|consen 294 EHGVPKEELALIAVPLVPLQIALPLYIGKWTAG--PRPLNVFLKAVPYRLGGGLVQTALVWWTPTL-GHS-DGT-FPRGY 368 (510)
T ss_pred HcCCChhHheeeeeehhhHHHhhhhhheeecCC--CCcchHHHHhhhHHHHHHHHHHHHHhhhccc-ccC-CCc-eeech
Confidence 889998887666544444444444444444332 222111 00 111122222222211000 000 000 00111
Q ss_pred HHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 387 DFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
....+....+...+.........+..+++.++...|+.+.+.|+..++|+-.-..+..++.|..
T Consensus 369 ~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 369 YILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 1122212222222222222334456678899999999999999999999988888888887743
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=84.29 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHh--chhhhHHHHHHHhhhhcccccccchhhhh
Q 010185 81 LLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGA--AVNIAMLIIGRLMLGVGVGFANQVVPVYL 158 (516)
Q Consensus 81 ~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 158 (516)
..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888899999999999999999999888776654443333 35777888888999999999999999999
Q ss_pred hccCCc-------CccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010185 159 SEMAPA-------KVRGALNIGFQMAITIGILIANLVNYGTAKI 195 (516)
Q Consensus 159 ~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~ 195 (516)
+|..+. ++.|...+.......+|..+|+.+++.+.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 2236678888888899999999888776543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-07 Score=87.04 Aligned_cols=186 Identities=10% Similarity=0.020 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHHHHHHh--cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCC-chHHHhhhHHH
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFKT--IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGR-RVLFLEGGVQM 358 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~~~ 358 (516)
++..+...+..+.....+..+..-.-.++++ .+-+.+-.|+..+...++..++.++.++...|.++ |+.++.+.+.+
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 3334444443443333333322222234444 67777888999999999999999999999999886 78888899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHH
Q 010185 359 FICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFV 438 (516)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 438 (516)
.++.++...+.+. .+.+..+++++=+..+++.+.....-.|+++..-.+.|.++++..+....+|.++
T Consensus 113 ~~g~llY~~l~~~------------~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il 180 (488)
T KOG2325|consen 113 IIGNLLYLALAYV------------PNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL 180 (488)
T ss_pred HHHHHHHHHHHhc------------ccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH
Confidence 9999888554332 1224444444444555555555667788888777788888888888777777777
Q ss_pred HHHHhHHHHhh------------cc-h-hhHHHHHHHHHHHHHHHhhcccCCCCC
Q 010185 439 VGQVFLSMLCH------------FK-F-GLFFFFAGFVAVMTVFVFYMVPETRNV 479 (516)
Q Consensus 439 ~~~~~~~~~~~------------~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (516)
||.+...+... ++ | .+.|+.+.+.++..++..++.+|..+.
T Consensus 181 Gp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 181 GPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred hHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 77665443221 11 2 234555555556666666666665443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=74.59 Aligned_cols=308 Identities=13% Similarity=0.110 Sum_probs=164.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+....++|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.++++ +-.++++-.++++|.+-|+..+..+.+--
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 66778888888877778888889999999999999977666666655443 44678999999999999999988887766
Q ss_pred hh-hhccCCcCccchh----HHHHH----HHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCCh
Q 010185 156 VY-LSEMAPAKVRGAL----NIGFQ----MAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTP 226 (516)
Q Consensus 156 ~~-i~~~~~~~~r~~~----~~~~~----~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 226 (516)
++ +.|.-++ |+.- ...+. .++.+=.+++.+.+-.+.+..+ .|--.+|-..+....+...+.+ .
T Consensus 147 sWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil-----~ 218 (454)
T KOG4332|consen 147 SWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVIL-----S 218 (454)
T ss_pred HHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHH-----h
Confidence 54 4555432 3221 11111 1222223333333333332111 1333444433322222211111 0
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhH
Q 010185 227 NSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYA 306 (516)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (516)
.|-..-++..|.++.+... +...+.+. ..+++.+...+...+-...+.....|.
T Consensus 219 ~W~ENygdps~~kdlltqf-----------------------~gaa~aia---SD~ki~LLG~iqsLFE~smytFVFLWT 272 (454)
T KOG4332|consen 219 SWSENYGDPSENKDLLTQF-----------------------KGAARAIA---SDEKIALLGAIQSLFEGSMYTFVFLWT 272 (454)
T ss_pred hhhhccCChhhhHHHHHHh-----------------------hHhHHHHh---cchHHHHHHHHHHHHhhhhheeeeeec
Confidence 1211122222222211111 11111121 133444444444444444444455566
Q ss_pred HHHHH-hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCc--hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 010185 307 PVLFK-TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRR--VLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTK 383 (516)
Q Consensus 307 ~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (516)
|.+-. +.+ ..-|.+++.+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+....... ..++
T Consensus 273 PaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~v--------sP~k 341 (454)
T KOG4332|consen 273 PALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSV--------SPSK 341 (454)
T ss_pred ccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhcc--------CCCc
Confidence 65421 112 2237788888888889888887777665443 45555555555544444332221 1122
Q ss_pred chhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHH
Q 010185 384 FDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVS 430 (516)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 430 (516)
......++..+++-.+.+..+ |...-+-.+..|++.|++.+-+...
T Consensus 342 es~~~s~i~F~~~E~cvGlfw-PSimkmRsqyIPEearstimNfFRv 387 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFW-PSIMKMRSQYIPEEARSTIMNFFRV 387 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcc-hHHHHHHHhhCCHHHHhhhhhheec
Confidence 334444666666666666554 4444455678899988877655433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=84.85 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 311 KTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 311 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
++.++...+.+...+++.++.+++.+.++.+.||++..+.+....+...+..++-.. ..+...+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----------------~~s~~~~ 137 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----------------VHSFPGL 137 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------------HhhhHHH
Confidence 344666778899999999999999999999999999554444333332222222222 1333444
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh------hcchhhHH-HHHHHHH
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC------HFKFGLFF-FFAGFVA 463 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~------~~g~~~~~-~~~~~~~ 463 (516)
++.-++.+.+..+..|....++..-+.++.|+.-+|+.+....+|+++++.+...+.. ..||...+ +-+++.+
T Consensus 138 ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~ 217 (495)
T KOG2533|consen 138 IALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITL 217 (495)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHH
Confidence 4555556666666678777888899999999999999999999999999999887643 34565544 4556666
Q ss_pred HHHHHHhhcccCCCC
Q 010185 464 VMTVFVFYMVPETRN 478 (516)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (516)
+.++++++++|+...
T Consensus 218 ~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 218 VLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHheEEEEecCChh
Confidence 667777777776544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-05 Score=75.43 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=99.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhhhcccccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV--NIAMLIIGRLMLGVGVGFANQV 153 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 153 (516)
|.++....+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.+ +.+..++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44666777788888888888899999999999999999999999999999998876 7889999999999999999999
Q ss_pred hhhhhhccCCc-------CccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010185 154 VPVYLSEMAPA-------KVRGALNIGFQMAITIGILIANLVNYGTA 193 (516)
Q Consensus 154 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 193 (516)
..++++|..+- ++-|...+......=+|..++..+.++..
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888752 22377788888777788888876655543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=79.18 Aligned_cols=142 Identities=9% Similarity=0.050 Sum_probs=89.7
Q ss_pred hhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc----cCCchH-HHhhhHHHHHHHHHHHHHHHH
Q 010185 298 GINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDK----FGRRVL-FLEGGVQMFICQCLVGIMLAL 371 (516)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~r~~-~~~~~~~~~~~~~~~~~~~~~ 371 (516)
.+.....|+.+++.+ .|+++..+|.+..+.-+...+.-++.|.++|| +|||+. +.++.+.++++..++....
T Consensus 24 ~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-- 101 (460)
T PRK11462 24 IFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-- 101 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC--
Confidence 334555566655554 79999999999999999999999999999997 466544 4456566666654443210
Q ss_pred hcCCCCCCCcccchhH-HHHHHHHHHHHhhhcCcccccceeecccCc-hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 372 KFGLRGEGTLTKFDAD-FVLFLICAYVAAFAWSWGPLGWLVPSEVCA-LEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 372 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
..+..... +..+..+++..++... .....++..|+.+ +++|++..++......+|+.+++.+...+...
T Consensus 102 --------~~s~~~~~~y~~~~~~~~~~~~t~~-~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 102 --------DLSMNGKMIYAAITYTLLTLLYTVV-NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHH-hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111 2222222233333322 2233455667665 78999999999999998888887776655544
Q ss_pred c
Q 010185 450 F 450 (516)
Q Consensus 450 ~ 450 (516)
.
T Consensus 173 ~ 173 (460)
T PRK11462 173 I 173 (460)
T ss_pred h
Confidence 3
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.2e-06 Score=66.72 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=96.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhh
Q 010185 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPV 156 (516)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 156 (516)
+++..--.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++..-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344443445566667778888889999999999999999999998655443 5678889999999999999999999999
Q ss_pred hhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010185 157 YLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGT 192 (516)
Q Consensus 157 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~ 192 (516)
++.+..++++|++..++.......+.++|.++..++
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888775544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-07 Score=85.34 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=125.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+-.+...|........+-++.-++.+++.+|+|+-+++.+++....+=.+...+.+|.|+.+...+++|+..+..+.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55677778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHHHHH-HHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 156 VYLSEMAPAKVRGALNIGFQMA-ITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
+|++...||+-|..+.++.+.. .++|--+|.++|+.+... ++=|..|.+.++.+++.++....
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888655 568888888888877654 37888898888888776655443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-05 Score=75.02 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=124.9
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHh-hhchhHHHHHHHHHHHHHHHHHHhc---hhhhHHHHHHHhhhhcc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTR-MYGRKMSMTVGGISFLIGAIINGAA---VNIAMLIIGRLMLGVGV 147 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~ 147 (516)
-+-||++..+...+.+....|..++-...|++.. |.++|+...+++.+..++..+..++ .+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 3346999999999999999999999999999888 6788888888888888877765544 67889999999999999
Q ss_pred cccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcccc-------CCcchhHHHHHhHHHHHHHHHhh
Q 010185 148 GFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS-------GGWGWRVSLALAAVPAILMTVGS 219 (516)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-------~~~~wr~~f~~~~~~~~~~~~~~ 219 (516)
|.+.....+.+.+..++++.|..+|.+.....++..++..+|+.+.+.. ...+|-.+|.+.++..++.+.+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776432 22467788888777766655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-05 Score=75.36 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=110.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhchh----------------------
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAVN---------------------- 132 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~---------------------- 132 (516)
|.+.....-..+.+.-......+.+++++|.| ||-+++.++.++..++..+..++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 66777778888888888888999999999987 9999999999988888665554311
Q ss_pred ---hhHHHHHHHhhhhcccccccchhhhhhccCC---cC---ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhH
Q 010185 133 ---IAMLIIGRLMLGVGVGFANQVVPVYLSEMAP---AK---VRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRV 203 (516)
Q Consensus 133 ---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~ 203 (516)
...++...-+..+|.|+.-+...++-+|-++ ++ ++...+.++....++|..++..+-.+.. ++.+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq---~~~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ---DNVGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh---hccccee
Confidence 1266677788889999999999999999998 32 2247788999999999999988844443 4459999
Q ss_pred HHHHhHHHHHHHHHhhc
Q 010185 204 SLALAAVPAILMTVGSF 220 (516)
Q Consensus 204 ~f~~~~~~~~~~~~~~~ 220 (516)
.|.+..+...+.+++++
T Consensus 226 gf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIFL 242 (571)
T ss_pred eccHHHHHHHHHHHHHH
Confidence 99888777666555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-06 Score=59.60 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=59.9
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHH
Q 010185 73 AYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLI 137 (516)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (516)
+|.++|.++.+++.+.+++||.+|++...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 33489999999999999999999999999999998999999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-05 Score=76.26 Aligned_cols=136 Identities=12% Similarity=0.116 Sum_probs=98.3
Q ss_pred HHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccc
Q 010185 327 TGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGP 406 (516)
Q Consensus 327 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (516)
.++..++.+...|.++|++|||..+........+...++.+- .++.++ .....+.......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-----------------~~~~~~--~~~l~g~~~~~~s 131 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-----------------GYWFFL--LLGLSGGFSAIFS 131 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-----------------HHHHhh--hcccccchhhhhh
Confidence 367888889999999999999999988887777777666652 222222 1122222223345
Q ss_pred ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHH-HHHHHHHHHHHhhcccCCCCCCH
Q 010185 407 LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFF-AGFVAVMTVFVFYMVPETRNVPI 481 (516)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 481 (516)
...+++++....+.|....|+.+.....+..++|.+.+.+....+....+.+ .+...+......+.+||+..++.
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 6678888999999999999999999999999999999999988886544444 44444555555667787765543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0033 Score=62.12 Aligned_cols=260 Identities=12% Similarity=0.113 Sum_probs=141.1
Q ss_pred CchhHHHHHHHHHH-HHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc---------h----------------
Q 010185 78 DSQLLTLFTSSLYL-AALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA---------V---------------- 131 (516)
Q Consensus 78 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~---------------- 131 (516)
.++.+..+-....+ ...+...+..+++|+++|.+++-+.+..+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55666666665555 455667889999999999999998888777777776663 1
Q ss_pred ------hhhHHHHHHHhhhhccccccc-chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcc-cc-----CC
Q 010185 132 ------NIAMLIIGRLMLGVGVGFANQ-VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAK-IS-----GG 198 (516)
Q Consensus 132 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-~~-----~~ 198 (516)
+.|.+.+..++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+ .. +.
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 112222222222222222222 346778999999999999999999999999999988776665 11 12
Q ss_pred cchhHHHHH-hHHHHH---HHHHhhccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhh
Q 010185 199 WGWRVSLAL-AAVPAI---LMTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTN 274 (516)
Q Consensus 199 ~~wr~~f~~-~~~~~~---~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (516)
..|...... .+++.+ +.......+.+.. ..+++. . ....++++++.+.+..+
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~------------------~---~~~~~~kk~k~k~s~~e 271 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRF------------------Y---PSAKKKKKKKPKMSLKE 271 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCcccc------------------c---hhhhcccccCCCccHHH
Confidence 256544322 222221 1111111111100 000000 0 01112233344555555
Q ss_pred hhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchh----HHHHHHHHHHHHHHHhHhHhhhhcccCCchH
Q 010185 275 ILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEA----SLMSAVITGVVNVVATLVSVFSVDKFGRRVL 350 (516)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (516)
-++...+.+.+..+++....+....+.+-.--....++.--++.+ .|-.....++..++..++++.+.+|+|-+..
T Consensus 272 s~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 272 SFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 554444444455554444444333333322222222222122222 2445566677777777888899999998876
Q ss_pred HHhhhHHHHHH
Q 010185 351 FLEGGVQMFIC 361 (516)
Q Consensus 351 ~~~~~~~~~~~ 361 (516)
..+.-+++.+.
T Consensus 352 AlitPiv~lit 362 (491)
T PF03219_consen 352 ALITPIVILIT 362 (491)
T ss_pred HHHhHHHHHHH
Confidence 66554444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=67.74 Aligned_cols=155 Identities=14% Similarity=0.033 Sum_probs=89.6
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhH
Q 010185 308 VLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDAD 387 (516)
Q Consensus 308 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (516)
.+.+++|++..+.+.++........+...+.|.+.||+|||+..+...++..++++.--. ++.+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----------------~~~~ 122 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----------------SNYP 122 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----------------cccH
Confidence 344678999999999999999999999999999999999999888777777777654322 1222
Q ss_pred HHHHHHHHHHHhhhcCcccccceeecc----cCchhhhhhhHHHHHH-HHHHHHHHHHHHhHHHHhhcch--hhHHHHHH
Q 010185 388 FVLFLICAYVAAFAWSWGPLGWLVPSE----VCALEIRSAGQAINVS-TNMIFTFVVGQVFLSMLCHFKF--GLFFFFAG 460 (516)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~-~~~~g~~i~~~~~~~~~~~~g~--~~~~~~~~ 460 (516)
..++.=++.+..-+.....--.=++.| -+|++..+...+...+ .+.+..++...+...+.+..+. ..++..+.
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~ 202 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAI 202 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHH
Confidence 222221222222111111110011223 3465655666665553 3444555666666666666553 44555555
Q ss_pred HHHHHHHHH-hhcccCCCC
Q 010185 461 FVAVMTVFV-FYMVPETRN 478 (516)
Q Consensus 461 ~~~~~~~~~-~~~~~~~~~ 478 (516)
.+.+++.+. ....+|..+
T Consensus 203 ~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 203 VLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHhcccccCC
Confidence 554444443 334455443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00024 Score=72.99 Aligned_cols=160 Identities=12% Similarity=0.054 Sum_probs=101.6
Q ss_pred HhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 010185 304 FYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLT 382 (516)
Q Consensus 304 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (516)
.+..++.+.+|++...+..+........-+..++++++.|+ +|+++.+.++.++..++..++.+.... ...
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~--------~~~ 80 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP--------SSG 80 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc--------ccc
Confidence 34444555678988888877777777777888999999997 599999999988888888777652100 000
Q ss_pred cchhHHHHHHHHHHHHhhhcCcccccceeecccCchh---hhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc-------ch
Q 010185 383 KFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE---IRSAGQAINVSTNMIFTFVVGQVFLSMLCHF-------KF 452 (516)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~-------g~ 452 (516)
+.......+....++.+...+.-|...+...|.++++ .+.....+.....++|+.+++.+.+++.+.. +|
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 0011111222222222222333455566666777643 4677888888999999999999999887543 34
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 010185 453 GLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~ 471 (516)
...+...+++.+++++++.
T Consensus 161 ~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=71.38 Aligned_cols=108 Identities=18% Similarity=0.331 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc---hh------hhHHHHHHHhhhhcccccccchhhhhhccCCcC---ccchhHHHHHHHH
Q 010185 111 MSMTVGGISFLIGAIINGAA---VN------IAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAK---VRGALNIGFQMAI 178 (516)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 178 (516)
|+++++.+++.+|.++..++ .+ .+.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999985544 22 268899999999999999999999999999876 3567888999999
Q ss_pred HHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 179 TIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 179 ~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
++|..++..+..++. ++.+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~---~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ---QNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHH---HCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhc---cccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999999877666 4459999999988887776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.5e-05 Score=54.15 Aligned_cols=66 Identities=23% Similarity=0.460 Sum_probs=55.5
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQ 357 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 357 (516)
.+..+.....+.-|.|.++++.|+++.+.|++.++..+..+++.++.|.++||.++++........
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344455566677788888899999999999999999999999999999999999998877655443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0014 Score=64.19 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=53.6
Q ss_pred hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCC---cch--hHHHH
Q 010185 132 NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG---WGW--RVSLA 206 (516)
Q Consensus 132 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~---~~w--r~~f~ 206 (516)
.++..++.-++.|++.+.......++.+ .+|++ .+..+..|.+++++++.++--......++ ..+ ...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5667777788999999988888887766 55654 45555666666666655543322211111 112 23344
Q ss_pred HhHHHHHHHHHhhccCCCChH
Q 010185 207 LAAVPAILMTVGSFFLPDTPN 227 (516)
Q Consensus 207 ~~~~~~~~~~~~~~~~~e~p~ 227 (516)
+..++.+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555566666666777763
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.029 Score=54.19 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=145.8
Q ss_pred CchhHHHHHHHHHH-HHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc---------hh---------------
Q 010185 78 DSQLLTLFTSSLYL-AALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA---------VN--------------- 132 (516)
Q Consensus 78 s~~~~~~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 132 (516)
.+..+.++-+..-+ +..+..++.+++.+++.|.+++-+-+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56777888888888 778899999999999999999999888888888888764 11
Q ss_pred --------hhHHHHHHHhhhhccccccc-chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCc----
Q 010185 133 --------IAMLIIGRLMLGVGVGFANQ-VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGW---- 199 (516)
Q Consensus 133 --------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~---- 199 (516)
-|...+...+.=+=.+.... .-.....|.+..+|-.|..+.++.+.+++..++..+...+.+..+..
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 02222222222221121222 23355678888888899999999999999999998876666432210
Q ss_pred ---chhHHHHHhHHHHHHHHHhhcc----CCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCch
Q 010185 200 ---GWRVSLALAAVPAILMTVGSFF----LPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPW 272 (516)
Q Consensus 200 ---~wr~~f~~~~~~~~~~~~~~~~----~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (516)
.-+..+.+.+..++++..+..+ +.+.|+...+ ...++++++.+...
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~---------------------------~~~kk~~~k~k~~~ 271 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR---------------------------AKKKKKKKKLKLGL 271 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH---------------------------HhcccccccccCcH
Confidence 1233344444444444333322 2333322100 01112223334555
Q ss_pred hhhhccCCcchHHHHHHHHHHHHhhhhHHH-HHhHHHHHHhcCCCchh---HHHHHHHHHHH-HHHHhHhHhhhhcccCC
Q 010185 273 TNILRGRYRPQLTMCTLIPFFQQFTGINVI-MFYAPVLFKTIGFGAEA---SLMSAVITGVV-NVVATLVSVFSVDKFGR 347 (516)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~---~~~~~~~~~~~-~~~~~~~~g~l~d~~g~ 347 (516)
.+.++...+.+.+..+.+...++..+.+.+ ..|-.-..+.+..+.+. .+.+....++. .++...+++.+.+|.|-
T Consensus 272 ~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW 351 (509)
T COG3202 272 IESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW 351 (509)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence 555554444555555555444433332222 22222222222222222 23344445555 44556677788888887
Q ss_pred chHHHhhhHHHHHHHHHHH
Q 010185 348 RVLFLEGGVQMFICQCLVG 366 (516)
Q Consensus 348 r~~~~~~~~~~~~~~~~~~ 366 (516)
....++.-+++.+..+++.
T Consensus 352 ~~~AlitPiv~litg~lFF 370 (509)
T COG3202 352 FTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666665555555544443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=51.61 Aligned_cols=46 Identities=9% Similarity=0.235 Sum_probs=41.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHH
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF 120 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 120 (516)
.|++..++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3899999999999999999999999999999999988877765543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.71 E-value=6e-06 Score=82.80 Aligned_cols=156 Identities=10% Similarity=-0.064 Sum_probs=0.9
Q ss_pred HHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLAL 371 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 371 (516)
.+.+.............+-++++++..++|++.+..-++.++..++..++.+|..|-+.+-.+.++++++.+++.+-.+.
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 33344444444455566667789999999999999999999999999999999888888888999999999888775544
Q ss_pred hcCCC----C---------CCCc------------------ccchhHHHHHHHHH---HHHhhhcCcccccceeecccCc
Q 010185 372 KFGLR----G---------EGTL------------------TKFDADFVLFLICA---YVAAFAWSWGPLGWLVPSEVCA 417 (516)
Q Consensus 372 ~~~~~----~---------~~~~------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p 417 (516)
..... . .... ..........++++ +.+..+....++..+|+.|..+
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 32110 0 0000 01111122222222 2233233345678899999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 418 LEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 418 ~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
++..+...|+......+|-++|=.+.+...
T Consensus 172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 172 KKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------------
T ss_pred cccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999988888777766665443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.003 Score=60.89 Aligned_cols=43 Identities=5% Similarity=-0.155 Sum_probs=33.0
Q ss_pred ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 407 LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 407 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
...+.-+.+..|..-|+.+.+.|+..++|+-.-..+.=++.|.
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 3345556778889999999999999999987766666666553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.026 Score=53.48 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCC--cchhHHHHHhH
Q 010185 132 NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKISGG--WGWRVSLALAA 209 (516)
Q Consensus 132 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~--~~wr~~f~~~~ 209 (516)
.++..++.-.+.+++.|..........++. |++.-+. +.+|.++++.+..++.-......++ -+=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqa----vm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQA----VMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHH----HHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 456677777888888887777776665554 5553332 2334444444444332222221111 12334455556
Q ss_pred HHHHHHHHhhccCCCChH
Q 010185 210 VPAILMTVGSFFLPDTPN 227 (516)
Q Consensus 210 ~~~~~~~~~~~~~~e~p~ 227 (516)
++.+++.++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 666666666666777763
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.003 Score=60.20 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=100.6
Q ss_pred HHHHhHHHHHHh-cCCCchhHHHHHHH-HHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010185 301 VIMFYAPVLFKT-IGFGAEASLMSAVI-TGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378 (516)
Q Consensus 301 ~~~~~~~~~~~~-~g~s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (516)
.-.+..|++.+. .|++.++..--.-+ ..-..+..-+....+.|.++.|++++++.+...+...++.+.
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 345566777765 79988876433333 334555666777889999999999998888777776666552
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc--hhhHH
Q 010185 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK--FGLFF 456 (516)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g--~~~~~ 456 (516)
.......+.-+.++.... .-...++++=...|+++--++.+.......+|.+++..++..+....+ +....
T Consensus 92 -----~sv~~mq~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~ 164 (412)
T PF01770_consen 92 -----TSVLAMQLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN 164 (412)
T ss_pred -----CcHHHHHHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 122222222223322222 122334444456687888888999888888888888888777665333 44444
Q ss_pred HHHHHHHHHHHHHhhcccCCCC
Q 010185 457 FFAGFVAVMTVFVFYMVPETRN 478 (516)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~ 478 (516)
.+.......+.+..+++|..++
T Consensus 165 ~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 165 YISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCCc
Confidence 5555555556666666665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=66.32 Aligned_cols=197 Identities=12% Similarity=-0.013 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHH
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQC 363 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 363 (516)
+..++.+..+.+......+...+..+-+.++++..+.|++....-++..+......+...|..|-+.+-++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34444444444444444444444555556899999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHhcCCC-----------CC--------------------CCc--ccch---hHHHHHHHHHHHHhhhcCcccc
Q 010185 364 LVGIMLALKFGLR-----------GE--------------------GTL--TKFD---ADFVLFLICAYVAAFAWSWGPL 407 (516)
Q Consensus 364 ~~~~~~~~~~~~~-----------~~--------------------~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 407 (516)
+..+-.+...... +. ... .+.. .+..+++..++.+.......++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 9887654321100 00 000 0011 2223333333334334445667
Q ss_pred cceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc------------------c-hhhHHHHHHHHHHHHHH
Q 010185 408 GWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF------------------K-FGLFFFFAGFVAVMTVF 468 (516)
Q Consensus 408 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~------------------g-~~~~~~~~~~~~~~~~~ 468 (516)
..+|+.|...+++.....|+...+..+|-++|=.+.+.....+ | |+.-+++++...+...+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 8899999999899999999999988888887777776654311 2 33444555555555555
Q ss_pred HhhcccCCCCCC
Q 010185 469 VFYMVPETRNVP 480 (516)
Q Consensus 469 ~~~~~~~~~~~~ 480 (516)
.+++.|+...++
T Consensus 338 p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 338 PLFFFPKELPKS 349 (735)
T ss_pred HHHhCcccCccc
Confidence 566666655443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=60.70 Aligned_cols=128 Identities=20% Similarity=0.038 Sum_probs=83.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHH
Q 010185 313 IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFL 392 (516)
Q Consensus 313 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (516)
+| +.+.+-+...++.+..++..+.+.|+.||+|-|....++..+..++..+=..... +.-++..+-.+..
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~---------p~v~~~f~~~l~~ 144 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL---------PFVPPLFRRPLTH 144 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC---------ccccccchhhhhH
Confidence 45 6667778889999999999999999999999999999998888888776554210 0001222211111
Q ss_pred HHHHHHhhhcCc-ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 010185 393 ICAYVAAFAWSW-GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF 450 (516)
Q Consensus 393 ~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 450 (516)
..-........+ ..++.-...--+|+++|+.+..+..+.+.+|.+++-.+-+.+..+.
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111111111111 1122223334689999999999999999999988888877776554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0018 Score=63.77 Aligned_cols=157 Identities=12% Similarity=0.147 Sum_probs=92.3
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccC-----CchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 305 YAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFG-----RRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 305 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
..|++.+++|.++.+...+.....+.-.+ .++.|.++|-+. ||+.+.++.++..++.+.+....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---------- 80 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---------- 80 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc----------
Confidence 34556667899999887777766665554 678899999873 55556666666555555544421
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCcccccceeecccC---chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchhhHH
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVC---ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFGLFF 456 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~ 456 (516)
....+.....+.+.+...+.... -.+.-+...|.. |.+ +|...+.......+|+.++..+.|.+.+..++...+
T Consensus 81 -~~~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f 157 (433)
T PF03092_consen 81 -ASESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVF 157 (433)
T ss_pred -cccchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEe
Confidence 11112222222222222222211 123334444544 444 788889999999999999999999999988754444
Q ss_pred HHH-HHHHHHHHHHhhcccC
Q 010185 457 FFA-GFVAVMTVFVFYMVPE 475 (516)
Q Consensus 457 ~~~-~~~~~~~~~~~~~~~~ 475 (516)
.+. .+..+..+...+..+|
T Consensus 158 ~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 158 LISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 443 3444443444444454
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0069 Score=49.70 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHH
Q 010185 319 ASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVA 398 (516)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (516)
.-..-.++......+..++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+.+.
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASALLGF 101 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHhh
Confidence 3344455566667777888899999999999999888777655554432 233334444444444
Q ss_pred hhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 010185 399 AFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~ 446 (516)
+.+..+ ...-.++.+...++.+++..++.-.+.+.+.++|..+.-.+
T Consensus 102 ~~a~lW-~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 102 GAALLW-TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHhh-HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 33345566788888999999988888887777776655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0095 Score=52.51 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=37.2
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhhc-ccc--CCcchhHHHHHhHHHHHHHHHhhccC
Q 010185 165 KVRGALNIGFQMAITIGILIANLVNYGTA-KIS--GGWGWRVSLALAAVPAILMTVGSFFL 222 (516)
Q Consensus 165 ~~r~~~~~~~~~~~~~G~~i~~~i~~~~~-~~~--~~~~wr~~f~~~~~~~~~~~~~~~~~ 222 (516)
|+|+..+.+...+.++|.++.-..-. +. +.. ...+|++++.+.+++.++-+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~-~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFL-ISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888999887754411 11 111 11269999998888877666555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.031 Score=55.10 Aligned_cols=130 Identities=11% Similarity=-0.023 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHHH-hHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC--------Ccccch---
Q 010185 318 EASLMSAVITGVVNVVA-TLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG--------TLTKFD--- 385 (516)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--- 385 (516)
+...++-....+...+. .++.+++++|++|++............++++++......+..... ..+.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45555555555554454 788899999999999988877777777777666543211110000 000000
Q ss_pred ----hHHHHHHHHHHHHhhhcCccc-ccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 010185 386 ----ADFVLFLICAYVAAFAWSWGP-LGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSML 447 (516)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~ 447 (516)
..+......+..-.++....+ +.|.+++|.+..++..+-+++....+++|..+++.+..++.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222333333333333 77889999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0068 Score=43.48 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=60.7
Q ss_pred HHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHH
Q 010185 300 NVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIM 368 (516)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 368 (516)
..++-.+|.+.++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999888888888888888888777763
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.053 Score=54.58 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=69.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHH--HH-HHHHHH----Hhchhh-hHHHHHHHhhhhcc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGIS--FL-IGAIIN----GAAVNI-AMLIIGRLMLGVGV 147 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~ 147 (516)
|-+....+.+.+++.+|.++|+.+++++.++--|+.. .+-+.+ .+ ++..+. ++...+ ..++..-++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999988744333322 221111 11 111111 111111 12233445677777
Q ss_pred cccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010185 148 GFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193 (516)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 193 (516)
|+..|....+..+... ++-++..|.......+|.++|.++.+++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 8787777666655432 22456677777788888888887766543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.23 Score=48.49 Aligned_cols=172 Identities=8% Similarity=-0.009 Sum_probs=82.9
Q ss_pred HHHHhHHHHHHhc-CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 010185 301 VIMFYAPVLFKTI-GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG 379 (516)
Q Consensus 301 ~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (516)
...+-.+.++.+. .-+-...+.+.....+..++.....|...||..|.+......+..-++..+...............
T Consensus 20 ~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~ 99 (432)
T PF06963_consen 20 MWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS 99 (432)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4445556555553 334455666777777888888899999999999988777665544333333222221111110000
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCccc----ccceeecccC--chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcchh
Q 010185 380 TLTKFDADFVLFLICAYVAAFAWSWGP----LGWLVPSEVC--ALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKFG 453 (516)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~~ 453 (516)
..+.......+....+....-..+... +---++..+. +++......+...-+=.+...++|.+.|.+.+..+..
T Consensus 100 ~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~ 179 (432)
T PF06963_consen 100 SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPV 179 (432)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 000011111111111111111111111 1111222233 2333444444444455578999999999998877654
Q ss_pred hH-HHHHHHHHHHHHHHhhc
Q 010185 454 LF-FFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 454 ~~-~~~~~~~~~~~~~~~~~ 472 (516)
.. .++++...+...+=+++
T Consensus 180 ~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 180 IAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33 33333333333333333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.15 Score=49.74 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhHHHHh---hhchhHHHHHHHHHHHHHHHHHHhc------------------hhhhHHHHHHHhhhhc
Q 010185 88 SLYLAALVASFFASVVTR---MYGRKMSMTVGGISFLIGAIINGAA------------------VNIAMLIIGRLMLGVG 146 (516)
Q Consensus 88 ~~~l~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~ 146 (516)
...+|..++..+.+.+++ ++||++.+.++..+..++.++.-.+ +++...+++-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 334455555666666765 5799999999999999888887664 2456778888999999
Q ss_pred ccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHH
Q 010185 147 VGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLV 188 (516)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i 188 (516)
.+...+..+.++.+.+ +++|..+.++...-..++..++...
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 5668889998888888887776655
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.19 Score=46.54 Aligned_cols=135 Identities=12% Similarity=0.033 Sum_probs=84.3
Q ss_pred HHHHhHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGA--EASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGE 378 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (516)
......+.+..+.+.+. ...++......+...++.++.|++.||.|||+.+..+......+.+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 34445566666655555 467888888888888988999999999999977776665533332222221
Q ss_pred CCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCch-hhhhhhHHHHHH-HHHHHHHHHHHHhHHHHhh
Q 010185 379 GTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCAL-EIRSAGQAINVS-TNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~~~~~~~~~ 449 (516)
. ..............+.......+....+..|..|+ +.|+...+.... ...++..+++.+.+.+...
T Consensus 90 --~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 --P--NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --c--cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11112222222212222223456667777888887 678888888887 5777778888666666554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.013 Score=52.72 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccC
Q 010185 83 TLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMA 162 (516)
Q Consensus 83 ~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 162 (516)
|.+.-+-.+...+..+......||+---+=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++.+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 333334445556666666777788643333455667788889999999999999999999999988777665554333 3
Q ss_pred CcCccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCC
Q 010185 163 PAKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPD 224 (516)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 224 (516)
++ ...+.++.+.+.+.++|..--.++.+. -+.+-|...++...+.++.....++ +++
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~-~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSW-ANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhh-cCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 22 344555555565666665543444443 2235677777766655555555444 443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.012 Score=56.17 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc----cCCchHHHh-hhH
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDK----FGRRVLFLE-GGV 356 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~r~~~~~-~~~ 356 (516)
++++....+.+..++ ++..-..|.+.+.+..|.+....+......-+.+++.+++.|..+|| +||||..+. +..
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 444444444444444 44556667777788899999998888888889999999999999996 677766554 445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHH----HHHHHhhhcCcccccceeecccCchhhhhh-hHHHHHHH
Q 010185 357 QMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLI----CAYVAAFAWSWGPLGWLVPSEVCALEIRSA-GQAINVST 431 (516)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~ 431 (516)
+.+++++++..........-++.. .......+... .+.-..-..... ..-++..|+...+++.+ +.+....+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~--~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f 187 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER--KPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFF 187 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc--cccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHH
Confidence 555555555543322111000000 00111111111 111112112222 33456667776666666 88888888
Q ss_pred HHHHHHHHHHHhH
Q 010185 432 NMIFTFVVGQVFL 444 (516)
Q Consensus 432 ~~~g~~i~~~~~~ 444 (516)
..+|+.+|=.+.+
T Consensus 188 ~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 188 MAVGNVLGYALGS 200 (498)
T ss_pred HHhcceeeeeccc
Confidence 8888877655554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.081 Score=50.67 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=84.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHH-----HHHHHHHHhchhhhHHHHHHHhhhhccccccc
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISF-----LIGAIINGAAVNIAMLIIGRLMLGVGVGFANQ 152 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 152 (516)
..++..+...+|.+|..++.--...+ |+ |++.+.+.+-. .+.....-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 46778888888888877775433222 33 33333332222 22223334568999999999999999999999
Q ss_pred chhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010185 153 VVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTA 193 (516)
Q Consensus 153 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 193 (516)
-....+.|-.++++|-.+++....+-++|..++.+++..+.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.69 Score=44.17 Aligned_cols=61 Identities=7% Similarity=-0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccC
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFG 346 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (516)
++.+++.......-.+.+.+-.+++.+.+-.+.. +........+.+.+..++.-.+--+..
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~ 80 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLN 80 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445566777777888777533222 444455555555555555544444443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0023 Score=59.87 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=2.6
Q ss_pred ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 010185 405 GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 405 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
.++...+..+..+++.|..+-.+...+-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888887777666666666666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.53 Score=47.54 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=70.5
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHH
Q 010185 312 TIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLF 391 (516)
Q Consensus 312 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (516)
-+|-+....+.+.+.+.++..+|+.+++++.++..++ ...+-..+..++.+......... ... ........
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~-------~~~-~~~~~~~~ 114 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAF-------AFQ-GLSRLLLY 114 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHH
Confidence 3577777778888888888888888888775332222 11111111111111111110000 000 01111111
Q ss_pred HHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh-hcch-hhHHHHHHHHHHHHHHH
Q 010185 392 LICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC-HFKF-GLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~ 469 (516)
...+....+.....|+..-+..+. ..+..+...|-.+....+|+++|+.+.+.+.- ..|. ...+..+.+.++++++.
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 112222222222234333222221 11234566788888899999999999887765 4553 44445555554554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=49.45 Aligned_cols=119 Identities=9% Similarity=-0.036 Sum_probs=74.3
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchh---hhhhhH
Q 010185 349 VLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALE---IRSAGQ 425 (516)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~ 425 (516)
+.+.++.++..++.+++......... .+........+.+.+ ......+.=|....+.+|.++++ .|....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~------~~~~~~~~~~~gL~l-ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL------PSGIQLGLFYIGLAL-IAVGTGGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHH-HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh------hhhHHHHHHHHHHHH-HHhccccccccHHHHHHHHhcccchhhhhhhH
Confidence 45667778888888876554321100 000111222222222 22223344455566667877655 456677
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhccc
Q 010185 426 AINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVP 474 (516)
Q Consensus 426 g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (516)
.......++|+.++..+.+++.++.+|...+.+..++.+.+++.+...+
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 7888999999999999999999999998888888888888877766554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.89 Score=44.79 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHhHhhhhcccCCc
Q 010185 325 VITGVVNVVATLVSVFSVDKFGRR 348 (516)
Q Consensus 325 ~~~~~~~~~~~~~~g~l~d~~g~r 348 (516)
....+..++..+....+..|+..|
T Consensus 52 ~~~~v~~l~~~~~~~~~~~~i~~~ 75 (437)
T TIGR00939 52 LASQLPSLLFNSLNLFLIFRIPVT 75 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcc
Confidence 344445555555566666676653
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3 Score=42.60 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=100.9
Q ss_pred HHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHHHHhcCCC----
Q 010185 302 IMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIMLALKFGLR---- 376 (516)
Q Consensus 302 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 376 (516)
......++...++.+...+.-.............+++++++|.+ ||-+.+.++.++..+++.++........-..
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 34555666666777776666666777777777788999999975 8889998888888888777666544331110
Q ss_pred -CCC--Cccc-chhHHHHHHHHHHHHh-hhcCcccccceeecccCc----hhhhh--hhHHHHHHHHHHHHHHHHHHhHH
Q 010185 377 -GEG--TLTK-FDADFVLFLICAYVAA-FAWSWGPLGWLVPSEVCA----LEIRS--AGQAINVSTNMIFTFVVGQVFLS 445 (516)
Q Consensus 377 -~~~--~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~i~~~~~~~ 445 (516)
... .... ......++...+.... ...+.-+.....-+|-++ .+.+. .-........++|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 000 0111 1122223333333333 233334555566667666 22223 56677777888888888888888
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHh
Q 010185 446 MLCHFKFGLFFFFAGFVAVMTVFVF 470 (516)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (516)
.-++.+|..-+-....+...+++++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHH
Confidence 7777776554444444444444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.2 Score=44.50 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=74.7
Q ss_pred HHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCC--------cccchhH-------HHHHHHH
Q 010185 330 VNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGT--------LTKFDAD-------FVLFLIC 394 (516)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------~~~~~~~ 394 (516)
+.++...+-.++++++++.++..+........+.++++..+-..+.-+... ..++-.+ +...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344556678899999999998887777777777777665432111100000 0000001 1111222
Q ss_pred HHHHhhhcCc-ccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 010185 395 AYVAAFAWSW-GPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLC 448 (516)
Q Consensus 395 ~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~ 448 (516)
+..-.++... .-+.|.+++|..+.++..+.+++.....++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 23568899999999999999999999999999999999888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=7.2 Score=36.18 Aligned_cols=98 Identities=28% Similarity=0.410 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCc--Ccc
Q 010185 90 YLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPA--KVR 167 (516)
Q Consensus 90 ~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r 167 (516)
.+....++++.+.+.+++|-|.++.++...+... +..-+-+.+..++-.-.+.|++.+..+..--+|+++.-.. ++|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 3444555666669999999999999988877653 3334557888999999999999999998888887766532 223
Q ss_pred -------------chhHHHHHHHHHHHHHHHHHH
Q 010185 168 -------------GALNIGFQMAITIGILIANLV 188 (516)
Q Consensus 168 -------------~~~~~~~~~~~~~G~~i~~~i 188 (516)
+....+++.....|.+++..+
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.51 E-value=19 Score=35.59 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=81.6
Q ss_pred CchhHHHHHHHHHH-HHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCC---------Ccccc-
Q 010185 316 GAEASLMSAVITGV-VNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEG---------TLTKF- 384 (516)
Q Consensus 316 s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~- 384 (516)
++.....+-...-+ +.++..++..++.+++.+.++...........++++++..+-..+..... ..+.+
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34444444444444 56677788889999999999888777777777777776654221111000 00000
Q ss_pred -------hhHHHHHHHHHHHHhhhc-CcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 010185 385 -------DADFVLFLICAYVAAFAW-SWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCH 449 (516)
Q Consensus 385 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 449 (516)
+.|... ...+..=..+. ...-+.+..+.|....++..+-+++.+...+++..+++.+..++..+
T Consensus 139 ~~~ili~~~Ws~s-~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYS-LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 011111 11111111111 12235677788999999999999999999999999999988887663
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.32 Score=43.23 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=38.7
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhH
Q 010185 305 YAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGV 356 (516)
Q Consensus 305 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 356 (516)
|.-++.+.+|+...+.+.++.......++...+.|-+.||.|||+.-+.-.+
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyci 110 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCI 110 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehH
Confidence 3334556778888888887777666677777888999999999987654433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.22 E-value=4 Score=40.23 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHhHHHHHHh--cCCCchhHHHHHHH---HHHHHHHHhHhHhhhhcccCCchHHHhhh
Q 010185 292 FFQQFTGINVIMFYAPVLFKT--IGFGAEASLMSAVI---TGVVNVVATLVSVFSVDKFGRRVLFLEGG 355 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~---~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 355 (516)
++.+..-.....--.|+++++ .+.|-.+.+..... +++=-+-+.++=...+.|+||||..++-.
T Consensus 9 Y~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 9 YFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred HHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 334444333333467888887 56666655443322 22222222233345566889998776543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.26 E-value=4.6 Score=38.30 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhc-----ccCCchHHHhh
Q 010185 284 LTMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVD-----KFGRRVLFLEG 354 (516)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~r~~~~~~ 354 (516)
+....++ +..+..-+.... ..|.+++..|.|-+..+.......=. --.++..++.| |+||||..++-
T Consensus 33 illLl~L-YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 33 ILLLLFL-YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHH-HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeee
Confidence 3443333 445555544444 88999998777766655443332211 12455666677 99999876543
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.99 E-value=7.5 Score=34.31 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHHHHhHhHhhhhcccCCchHHHhhhHHHHHH
Q 010185 329 VVNVVATLVSVFSVDKFGRRVLFLEGGVQMFIC 361 (516)
Q Consensus 329 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 361 (516)
++..++.+.+-.++.|+..|.+.+.+.+++.+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 444444444456778888887777776654444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.90 E-value=3.5 Score=37.74 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhh
Q 010185 80 QLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYL 158 (516)
Q Consensus 80 ~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 158 (516)
.|.-|....|.+|..+..--.-..--++ ---.++-.-.+++.+...+..+.+++|..++.-+.-|+-.|..++-..--+
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i 367 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI 367 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 3567888888877544322111111110 001122233445555666667889999999999999998888888887778
Q ss_pred hccCCcCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010185 159 SEMAPAKVRGALNIGFQMAITIGILIANLVNYGT 192 (516)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~ 192 (516)
.+-.++++|-.+++...++-++|..++.+++..+
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8878889999999999999999999998886544
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.38 E-value=9.1 Score=28.56 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHH
Q 010185 81 LLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLI 122 (516)
Q Consensus 81 ~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~ 122 (516)
..+.-.+.=+++..+.....||+.||| |-++..++..++.+.
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 345556667788888888899999997 666665555444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 516 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-41 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 516 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-06
Identities = 82/476 (17%), Positives = 140/476 (29%), Gaps = 142/476 (29%)
Query: 50 MDQFLKDF-------FPK-VYRKQ-----LNKGHESAYCKFDSQLLTLFTSSL-YLAALV 95
D F+ +F PK + K+ + S L LF + L +V
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA------VSGTLRLFWTLLSKQEEMV 79
Query: 96 ASFFASVVTRMYGRKMSMTVGGISFLIGAI---INGAAVNIAMLIIGRLMLGVGVGFANQ 152
F V+ Y FL+ I ++ M I R L NQ
Sbjct: 80 QKFVEEVLRINYK-----------FLMSPIKTEQRQPSMMTRMYIEQRDRLYND----NQ 124
Query: 153 VVPVY-LSEMAP-AKVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAV 210
V Y +S + P K+R AL ++ +LI G G G + +AL
Sbjct: 125 VFAKYNVSRLQPYLKLRQAL---LELRPAKNVLI-----DGV----LGSG-KTWVALDVC 171
Query: 211 --PAIL---------MTVGSFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLY 259
+ + + + ++P ++LE MLQK+ +D +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNC---NSPETVLE---------MLQKLL--YQIDPNWTSRS 217
Query: 260 DASEAAKQVHHPWTNILRGRY--RPQLTMCTLIPFFQQFTGI-NVIMFYAPVLFKTIGFG 316
D S K H LR R C L+ + NV +
Sbjct: 218 DHSSNIKLRIHSIQAELR-RLLKSKPYENCLLV--------LLNV---QNAKAWNAFNLS 265
Query: 317 AEASLMSAVIT---GVVNVV-ATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372
+ L + T V + + A + S+D L + + + + L
Sbjct: 266 CK-IL---LTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLL-KYL-DCRP--- 315
Query: 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTN 432
L E T L +I + +W W + I S N
Sbjct: 316 QDLPREVLTT---NPRRLSIIAESIRDGLATWDN--WK------HVNCDKLTTIIESSLN 364
Query: 433 MIFTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETRNVPIEEMNRMW 488
++ ++F + VF P + ++P ++ +W
Sbjct: 365 VLEPAEYRKMFDRL---------------------SVF---PPSAHIPTILLSLIW 396
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 79 SQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLII 138
+ ++ ++ S +YL+ + F A R+ G + ++ GG+ ++G I+ + L
Sbjct: 57 ASIMAIYASMVYLSGTIGGFVAD---RIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113
Query: 139 GRLMLGVGVGFANQVVPVYLSEM---APAKVRGALNIGFQMAITIGILIANLVNYGTAKI 195
+++ +G GF V + + + +I F I +G IA L+
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI-FVFGINLGAFIAPLI---VGAA 169
Query: 196 SGGWGWRVSLALAAV 210
G+ V+ +LAA+
Sbjct: 170 QEAAGYHVAFSLAAI 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.43 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.38 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.36 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.33 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.06 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=398.42 Aligned_cols=449 Identities=28% Similarity=0.509 Sum_probs=360.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
..+++.+.++++++++.+++|||.++++.+. |.+.++|..+. ..+.+.++.+.|++.+++.+|..+|+
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~ 72 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGG 72 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999998764 66666663221 11124467788999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHH------------------hchhhhHHHHHHHhhhhcccccccchhhhhh
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIING------------------AAVNIAMLIIGRLMLGVGVGFANQVVPVYLS 159 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 159 (516)
+++|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++
T Consensus 73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 4789999999999999999999999999999
Q ss_pred ccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcccc-----CCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCC
Q 010185 160 EMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS-----GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGH 234 (516)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 234 (516)
|+.|+++|++..++.+.+..+|.++++.++....... ....||+.+.+..++.++..+..+++||||||+..+++
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9999999999999999999999999999887665432 23479999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcC
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIG 314 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (516)
.+++.+.+++...++..+++..+.++...++++.. .... ....++.........+.+..+.+.+..|.+.+.+..+
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 99999998887665443333333222222222111 1111 1234556666666777778888889999999999988
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
.+...........++..+++.++++++.||+|||+.+..+...+.++++.+...... ....+..+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~ 377 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSML 377 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHHH
Confidence 888888888888999999999999999999999999999888888887776654322 123445555566
Q ss_pred HHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc------c-hhhHHHHHHHHHHHHH
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF------K-FGLFFFFAGFVAVMTV 467 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~ 467 (516)
++..++..+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 66777777888888999999999999999999999999999999999887765432 2 2356677888888888
Q ss_pred HHhhcccCCCCCCHHHHHHHHhcCcc
Q 010185 468 FVFYMVPETRNVPIEEMNRMWKAHWF 493 (516)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (516)
+.++++||||+|++||+++.+|++.+
T Consensus 458 ~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 458 FMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHheecCCCCCCHHHHHHHhCCCCc
Confidence 88899999999999999888765554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.64 Aligned_cols=399 Identities=14% Similarity=0.046 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHh
Q 010185 20 TSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFF 99 (516)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (516)
+++++..+...+++.+..+++...+++.. |.+ .+++ .+..+.+++.+++.++..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL------------------VEQG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT------------------TSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888877765443 322 3445 68899999999999999999999
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHHHHHHh----chhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHH
Q 010185 100 ASVVTRMYGRKMSMTVGGISFLIGAIINGA----AVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQ 175 (516)
Q Consensus 100 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 175 (516)
+|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++..
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcc-hhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHH
Q 010185 176 MAITIGILIANLVNYGTAKISGGWG-WRVSLALAAVPAILMTVGS-FFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253 (516)
Q Consensus 176 ~~~~~G~~i~~~i~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (516)
.+..+|.+++|.+++.+.... + ||+.|++.+++.++..++. +++||+|++...+++.+.. ++ +.
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~ 227 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND-YP 227 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------cc-cc
Confidence 999999999999988765433 6 9999999998887765544 5588887543211111000 00 00
Q ss_pred HHHHHHHHHHHhhhccCchhhh-hccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHH
Q 010185 254 EFQDLYDASEAAKQVHHPWTNI-LRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVN 331 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 331 (516)
+ +. +++++++.+.++. .+...+++.++...+..+...........+.|.++++ +|+++.+.+.......++.
T Consensus 228 ~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 228 D-DY-----NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp -----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred c-cc-----hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 00 0001111122221 1112222333444444444555566777888888877 7999999999999999999
Q ss_pred HHHhHhHhhhhccc--CCchHHHhhhHHHH-HHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccc
Q 010185 332 VVATLVSVFSVDKF--GRRVLFLEGGVQMF-ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLG 408 (516)
Q Consensus 332 ~~~~~~~g~l~d~~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (516)
+++.++.+++.||+ +||+.+..+..+.. ++.+++.. ....+.+.......+.+. ......+..
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 367 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-------------NPAGNPTVDMICMIVIGF-LIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-------------CCTTCHHHHHHHHHHHHH-HHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-------------hcccCHHHHHHHHHHHHH-HHhchHHHH
Confidence 99999999999999 99888776665554 33333221 011122222223222222 223334555
Q ss_pred ceeecccCchhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 409 WLVPSEVCALEIRSAGQAINVSTNMI-FTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 409 ~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
..+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..++...+.+.+++.+.+.+..++.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999 999999999999999887666655555555555444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=303.85 Aligned_cols=378 Identities=11% Similarity=0.090 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
++.+.....+++..+..+++....++.. |.+.+++ |++..+.+++.+++.+++.++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~ 81 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445556666777788888877666553 5555554 8999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHH---HhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIIN---GAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
|+++||+|||+++.++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+
T Consensus 82 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-cccCC----------------------cchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhc
Q 010185 178 ITIGILIANLVNYGTA-KISGG----------------------WGWRVSLALAAVPAILMTVGSFF--LPDTPNSILER 232 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~-~~~~~----------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~ 232 (516)
..+|.++++.+++.+. ...+. .+||+.|++.+++.++..+..++ .||+++...
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 239 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-- 239 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC--
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--
Confidence 9999999999988876 44321 01999998877776655544333 566552100
Q ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH-HH
Q 010185 233 GHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL-FK 311 (516)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (516)
+.+ ++++.+.++++++++ ++.+... +..+...........+.|.+ .+
T Consensus 240 -~~~---------------------------~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 287 (438)
T 3o7q_A 240 -SDA---------------------------KQGSFSASLSRLARI---RHWRWAV-LAQFCYVGAQTACWSYLIRYAVE 287 (438)
T ss_dssp -CCS---------------------------STTSHHHHHHHHTTC---SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccc---------------------------cccchhhhHHHHHhC---hHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 000111223344442 2333332 33333444455666777777 77
Q ss_pred hc-CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 312 TI-GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 312 ~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
+. |++..+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... ......
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 351 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----------------GGHVGL 351 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc----------------CCcHHH
Confidence 75 9999999999999999999999999999999999999988887777766655441 122223
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHH
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 469 (516)
....+.+.+ .....+....+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..+ +...+.+.+++.+...+.
T Consensus 352 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 352 IALTLCSAF-MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333333333 3344567777777899966 888888876 677999999999999999988 766666655555544443
Q ss_pred hh
Q 010185 470 FY 471 (516)
Q Consensus 470 ~~ 471 (516)
.+
T Consensus 429 ~~ 430 (438)
T 3o7q_A 429 AR 430 (438)
T ss_dssp HT
T ss_pred HH
Confidence 33
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=273.84 Aligned_cols=395 Identities=12% Similarity=0.065 Sum_probs=252.6
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh-hchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRM-YGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 150 (516)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCcCc--cchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC-CC---
Q 010185 151 NQVVPVYLSEMAPAKV--RGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL-PD--- 224 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e--- 224 (516)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+...+. |+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 677888899999999999999998877543 89999999877766655443321 11
Q ss_pred -ChHHHHhcCCHHHHHHHHHH----------------HhCCCCcHHHHHHHHH-----H-HHHhhhccCchhhhhccCCc
Q 010185 225 -TPNSILERGHVDEAKKMLQK----------------IRGTPNVDEEFQDLYD-----A-SEAAKQVHHPWTNILRGRYR 281 (516)
Q Consensus 225 -~p~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 281 (516)
..+....+.+.++.++..+. ..+..+.+........ . .......+.........+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 11000111122233332221 1111111111100000 0 00000000000000000111
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHH-----hhh
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFL-----EGG 355 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-----~~~ 355 (516)
.. .....+..+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+.
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp TT-HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 11 1222222222223333445556666655 5776667788888889999999999999999999986654 555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHH
Q 010185 356 VQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIF 435 (516)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (516)
.+.+++.+++......... ..+.+.+.......+.+.+ .....+....++.|.+|++.|+++.|+.+....+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGT------SGKVSPLWLVGSWALVILG-EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCC------CTTCCTHHHHHHHHHHHHH-HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC------CCCccHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555554443211000 0011222233333333333 33445666778889999999999999999999999
Q ss_pred HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCC
Q 010185 436 TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
..+++.+.+.+.+......+..+++++.+.+++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887654445555566666565555555544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=273.82 Aligned_cols=361 Identities=12% Similarity=0.114 Sum_probs=263.9
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY 107 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~ 107 (516)
+.++++.+..+++.....+.. |.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777776665443 4454444 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHH
Q 010185 108 GRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANL 187 (516)
Q Consensus 108 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 187 (516)
|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.
T Consensus 63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhh
Q 010185 188 VNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAK 266 (516)
Q Consensus 188 i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (516)
+++.+.+. .+||+.|++.+++.++..+. .+++||+|++..+ ++
T Consensus 143 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~ 186 (375)
T 2gfp_A 143 IGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------------------------------RT 186 (375)
T ss_dssp HHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------------------------------CC
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------------------------------cc
Confidence 98887644 38999999988888777664 4458887632100 01
Q ss_pred hccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc
Q 010185 267 QVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKF 345 (516)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (516)
+.+.++++.+++ ++.+. ..+..+...........+.|.+.++ .|.++.+.+.......++.+++.++.+++.||.
T Consensus 187 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 187 RLLTSYKTLFGN---SGFNC-YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp CTTTCSTHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred cHHHHHHHHhcC---cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334444442 22222 2233333344445566666766655 788899999999999999999999999999998
Q ss_pred CCchHHHhhhHH-HHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhh
Q 010185 346 GRRVLFLEGGVQ-MFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAG 424 (516)
Q Consensus 346 g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (516)
+++ +..+... ...+..++...... ..+.+.......+.+.+.+ ...+....+..|..| +.|+++
T Consensus 263 ~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 263 STL--MWQSVICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHH--HHHHHHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchH
Confidence 872 2222222 22222211111000 0122222233333333333 335666777789988 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 425 QAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 425 ~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
.|+.+....++..++|.+.+.+.+..++...+.+.++..
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999999999999999999999988777666665544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=247.63 Aligned_cols=142 Identities=13% Similarity=0.205 Sum_probs=129.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhcccccccch
Q 010185 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHH---HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 155 PVYLSEMAPAKVRGALNIG---FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+. .+||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8999999999999998877643 38999999988877766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=241.41 Aligned_cols=355 Identities=12% Similarity=0.061 Sum_probs=218.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHH---HHHHhchhh-hHHHHHHHhhhhccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGA---IINGAAVNI-AMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~~~~ 150 (516)
+|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999888776532 222333322 12445677777766665
Q ss_pred ccchhhhhhccCCc--CccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHH
Q 010185 151 NQVVPVYLSEMAPA--KVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNS 228 (516)
Q Consensus 151 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 228 (516)
.+.....+.++.++ ++|+...+....+..+|..++|.+++.+... +||+.|++.++..++..+..++.+|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH----CSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 55555555555543 3457777888778889999999998877643 79999998877765555555554443311
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
+.+.++.. ..+. ++....+++++++ +++.+..... .+.....+.....+.|.
T Consensus 194 ---~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 ---SATVANAV-------GANH--------------SAFSLKLALELFR---QPKLWFLSLY-VIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp ---SSCSSSSS-------SSCC--------------CCCCHHHHHHHTT---CHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---cccccccc-------cccc--------------ccccHHHHHHHhc---CCchhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000 0000 0000011222333 2222222222 22222223333344665
Q ss_pred HHHh-cC---CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 010185 309 LFKT-IG---FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKF 384 (516)
Q Consensus 309 ~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (516)
++++ ++ .+....+.......++.+++.++.++++||++||+.+..+..+.++..+++... +
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------------~ 310 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------------T 310 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------------C
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------------c
Confidence 5554 22 223445677777788889999999999999999998887776666554443220 1
Q ss_pred hhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 385 DADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAIN-VSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
+.+..+....+...... ...+..+.+++|.+|++.|+++.++. +....+|++++|.+.|.+.+..++...+.+.++..
T Consensus 311 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 22222222222222211 22233456888999999999999994 78889999999999999999877655555544444
Q ss_pred HHHHH-HhhcccCCC
Q 010185 464 VMTVF-VFYMVPETR 477 (516)
Q Consensus 464 ~~~~~-~~~~~~~~~ 477 (516)
+.+.+ .+...+|++
T Consensus 390 l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 390 LGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHTTSSCCSC
T ss_pred HHHHHHHHhhhcCCC
Confidence 44443 344444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-12 Score=125.62 Aligned_cols=154 Identities=7% Similarity=-0.063 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
+....+.++.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44444445555555566777788888999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
....... ++.+..++..++.+.+ .....+....++.|.+|++.|+++.++.+....+|..++|.+.+
T Consensus 108 ~~~~~~~------------~~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 108 FWPAAEI------------MNYTLFLVGLFIIAAG-LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHT------------TCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccc------------ccHHHHHHHHHHHHhh-HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432111 1223333333333333 33445566788889999999999999999999999999999999
Q ss_pred HHH-hhcc
Q 010185 445 SML-CHFK 451 (516)
Q Consensus 445 ~~~-~~~g 451 (516)
.+. +..+
T Consensus 175 ~l~~~~~~ 182 (438)
T 3o7q_A 175 SLILSNVP 182 (438)
T ss_dssp HHHHTSSC
T ss_pred HHHhcccc
Confidence 988 4443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=123.99 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=126.0
Q ss_pred HHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHh
Q 010185 293 FQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 372 (516)
+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----
Confidence 3344445556666777888899999999999999999999999999999999999999999988888888777653
Q ss_pred cCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch
Q 010185 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF 452 (516)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~ 452 (516)
++...+.......+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|
T Consensus 86 ------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 86 ------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 22222222233333333334566677888999999999999999999999999999999999888787
Q ss_pred hhHHHHHHHHHHHHHH-HhhcccCCC
Q 010185 453 GLFFFFAGFVAVMTVF-VFYMVPETR 477 (516)
Q Consensus 453 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 477 (516)
...+.+.++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6655555444444433 444555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=126.72 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=123.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhh
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVY 157 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 157 (516)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999999998888888888888888888888888877777777899
Q ss_pred hhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 158 LSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 158 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
+.|.+|++.|+++.+. ++....+|..++|.+++.+.+. .+++..|.+.+++.++..+..++ .||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4788889999999998877643 37888998888887776655444 66654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=123.78 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=126.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhc--hhhhHHHHHHHhhhhcccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY--GRKMSMTVGGISFL-IGAIINGAA--VNIAMLIIGRLMLGVGVGF 149 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 149 (516)
+|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988887777 777777666 3778888888999999998
Q ss_pred cccchhhhhhccCCcCccchhHHHHHHHHHH-HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 150 ANQVVPVYLSEMAPAKVRGALNIGFQMAITI-GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 150 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
..+....++.|.+|+++|++++++......+ |..++|.+.+.+.+.. +|+..|++.+++.++..++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 9999999988876543 8999999988887776665554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=122.65 Aligned_cols=160 Identities=11% Similarity=0.033 Sum_probs=116.5
Q ss_pred hhHHHHHhHHHH-HHhcC------CCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHH
Q 010185 298 GINVIMFYAPVL-FKTIG------FGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIML 369 (516)
Q Consensus 298 ~~~~~~~~~~~~-~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~ 369 (516)
.++....+.+.+ .+++| ++..+.++..+...++..++.++.|+++||+ |||+.+..+.++..++.+++...
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF- 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-
Confidence 334455555544 45678 9999999999999999999999999999999 99999998888888877776652
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH---HHHHHHHHHHHHHHHhHHH
Q 010185 370 ALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI---NVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~~~~~~ 446 (516)
+.+.+.......+. +.......+....++.|.+|++.|+++.+. .+....+|..++|.+.+.+
T Consensus 106 -------------~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 106 -------------EHSVQGFYTGLFLI-ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp -------------SSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred -------------cccHHHHHHHHHHH-HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00222233333333 333334456777888899999999876666 8889999999999999999
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHhhc
Q 010185 447 LCHFKFGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 447 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (516)
.+..++...+.+.++..+.+.+..+.
T Consensus 172 ~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 172 LKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776666555555554444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=122.34 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHhhhhHHHHHhHHHH-HHh-----cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVL-FKT-----IGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~ 364 (516)
.+.....++....+.+.+ .+. +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 333333444454445544 444 89999999999999999999999999999999 89999999998888887776
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh--hhhhHHHHHHHHHHHHHHHHHH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI--RSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
+... ++.+.......+.+.+ .....+....++.|.+|++. |+.+.++.+....+|..++|.+
T Consensus 102 ~~~~---------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 102 LALP---------------FGASALFGSIILIIIG-TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHSC---------------CSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---------------hhHHHHHHHHHHHHHH-HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 6541 1223333333333333 33345667788889999988 7788888999999999999999
Q ss_pred hHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 443 FLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
.+.+.+..+|...+...++..+.+.+..+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887666665555444444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=108.26 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=106.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-----hhhhHHHHHH-Hhhhhcccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-----VNIAMLIIGR-LMLGVGVGF 149 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r-~l~G~~~~~ 149 (516)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...- +..+++ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hH
Confidence 4566666777777888899999999999999999999999988888877766543 1122222222 222222 23
Q ss_pred cccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccc---cCCcchhHHHHHhHHHHHHHHHhh-ccCCCC
Q 010185 150 ANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKI---SGGWGWRVSLALAAVPAILMTVGS-FFLPDT 225 (516)
Q Consensus 150 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 225 (516)
..+....+.+|.+|.+.|++++++......+|..+++.+...+... ....++.+.|++.++++++..+.. +++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4466778999999999999999999999999988887764443221 011245667888888877766554 559999
Q ss_pred h
Q 010185 226 P 226 (516)
Q Consensus 226 p 226 (516)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 6
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 516 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.39 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-39 Score=315.58 Aligned_cols=401 Identities=14% Similarity=0.052 Sum_probs=276.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
..++++|.++..++++.+...++...++.+. | +.++ +|+|.++.|++.+++.+++.+++
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~--p-~~~~------------------~g~s~~~~g~~~s~~~~~~~~~~ 76 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAM--P-YLVE------------------QGFSRGDLGFALSGISIAYGFSK 76 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--H-HTTS------------------STTCSSCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHH------------------hCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888877765442 2 2233 38899999999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhch----hhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHH
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIINGAAV----NIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIG 173 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 173 (516)
+++|+++||+|||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+...+++.|++|+++|++++++
T Consensus 77 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 156 (447)
T d1pw4a_ 77 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 156 (447)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999998874 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCChHHHHhcCCHHHHHHHHHHHhCCCCcH
Q 010185 174 FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTPNSILERGHVDEAKKMLQKIRGTPNVD 252 (516)
Q Consensus 174 ~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (516)
.+.+..+|.++++.+++....... +||+.|++.+++.++..++.++ .+|+|+........++. ++
T Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-- 222 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND-- 222 (447)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC--
T ss_pred cccccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hh--
Confidence 999999999999988776554333 8999999988887766655444 67666332211111100 00
Q ss_pred HHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHH
Q 010185 253 EEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVN 331 (516)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 331 (516)
..++. .++.+++........+...+.+..+......+...........+.|.++++ .+++..+.+.......+..
T Consensus 223 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
T d1pw4a_ 223 -YPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298 (447)
T ss_dssp -----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred -cccch---hhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhh
Confidence 00000 000011111111112222233334444444444444555666677766655 6899999999999999999
Q ss_pred HHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccccee
Q 010185 332 VVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLV 411 (516)
Q Consensus 332 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (516)
+++.++.+++.||++|++.................... .....+.+......++ .+....+..+....+
T Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 367 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW----------MNPAGNPTVDMICMIV-IGFLIYGPVMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT----------SCCTTCHHHHHHHHHH-HHHHHTHHHHHHHHH
T ss_pred hhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH----------hcccccHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999987655544443333333322211 1111222222222222 223333345566677
Q ss_pred ecccCchhhhhhhHHHHHHHHHHH-HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHH
Q 010185 412 PSEVCALEIRSAGQAINVSTNMIF-TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVF 468 (516)
Q Consensus 412 ~~~~~p~~~~~~~~g~~~~~~~~g-~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 468 (516)
..|.+|++.|+++.|+.+...+++ ..++|.+.|.+.+..|+...+.+.+.+.+.+.+
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 789999999999999999988875 566788999999999876555444444343333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.9e-28 Score=236.98 Aligned_cols=355 Identities=10% Similarity=0.018 Sum_probs=230.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhH----HHHHHHhhhhcccccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAM----LIIGRLMLGVGVGFAN 151 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~~ 151 (516)
|+|+.+.|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+... .++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 889999999999999999999999999999999999999999999999998888766554 3455666666666555
Q ss_pred cchhhhhhccCCc--CccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHH-HHhhccCCCChHH
Q 010185 152 QVVPVYLSEMAPA--KVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILM-TVGSFFLPDTPNS 228 (516)
Q Consensus 152 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~ 228 (516)
........+..++ +++.+..+........+..+++.+++.+... +|+..+........+. .+..+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhcccccc
Confidence 5555554444433 2456677788888889999999998877654 5666666655554444 4445557766521
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhh---hccCCcchHHHHHHHHHHHHhhhhHHHHHh
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNI---LRGRYRPQLTMCTLIPFFQQFTGINVIMFY 305 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (516)
... .+ ++++++.+...... .+.+..+............ .......
T Consensus 195 ~~~---~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 242 (417)
T d1pv7a_ 195 ATV---AN-------------------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQ 242 (417)
T ss_dssp SCS---SH-------------------------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred hhh---hh-------------------------hhhhhcccccccccccccccccccchhhhhHHHHHH----HHhhhcc
Confidence 100 00 00111111111111 1111111122222221111 1122222
Q ss_pred HHHHHHh----cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 010185 306 APVLFKT----IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTL 381 (516)
Q Consensus 306 ~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (516)
.+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+.+++.+++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 309 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------- 309 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------------
Confidence 2222222 23345556777788888999999999999999999999998888877777666541
Q ss_pred ccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHhhcchhh-HHHHH
Q 010185 382 TKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINV-STNMIFTFVVGQVFLSMLCHFKFGL-FFFFA 459 (516)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~~~~~~g~~~-~~~~~ 459 (516)
++.+.......+.+.+.+ ...+....+..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|+.|+.. +++.+
T Consensus 310 --~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~ 386 (417)
T d1pv7a_ 310 --TSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp --CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred --cccchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 233333333333333333 334666777889999999999999864 5677999999999999999999654 44555
Q ss_pred HHHHHHHHHHhhcccCCCCCCHH
Q 010185 460 GFVAVMTVFVFYMVPETRNVPIE 482 (516)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~ 482 (516)
++..+..++..+.+++++..+.+
T Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 387 LVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhcCCCccchh
Confidence 55555556666666665555543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.3e-13 Score=133.41 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=116.9
Q ss_pred HHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 010185 301 VIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGT 380 (516)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (516)
.+....|.+ ++.|++..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++.+......
T Consensus 43 ~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 43 NFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp SHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 344455654 56899999999999999999999999999999999999999999988888887776532110
Q ss_pred cccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhh-HHHH
Q 010185 381 LTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGL-FFFF 458 (516)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~-~~~~ 458 (516)
.+.+..++...+.+.+ .....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |.. ++..
T Consensus 114 ---~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~ 189 (447)
T d1pw4a_ 114 ---SSIAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 189 (447)
T ss_dssp ---SSSSHHHHHHHHHHHH-HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred ---hhHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhh
Confidence 1222223333333333 233345666777899999999999999999999999999998888777653 444 3444
Q ss_pred HHHHHHHHHHHhhcccCC
Q 010185 459 AGFVAVMTVFVFYMVPET 476 (516)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (516)
+.+..+.+++.+.+.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 190 AFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHCCCS
T ss_pred hhhHHHHHHHHHHhcccc
Confidence 445555555555555544
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| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=8.2e-13 Score=125.82 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=129.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchh
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVP 155 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 155 (516)
+.+....+...+...++..++.++.+++.||+|||+++.++.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcCccchhHHHH-HHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCC
Q 010185 156 VYLSEMAPAKVRGALNIGF-QMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPD 224 (516)
Q Consensus 156 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 224 (516)
+++.|.+|+++|+++.++. .....+|..++|.+++.+.+.. ||+..|++.+++.++..++..+ +++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 5667899999999988877544 8999999988887776655544 443
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