Citrus Sinensis ID: 010229
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L844 | 709 | Pentatricopeptide repeat- | yes | no | 0.824 | 0.598 | 0.425 | 1e-102 | |
| Q9FFZ2 | 330 | Putative pentatricopeptid | no | no | 0.616 | 0.960 | 0.402 | 5e-75 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.813 | 0.559 | 0.277 | 3e-48 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.727 | 0.456 | 0.279 | 3e-45 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.747 | 0.620 | 0.267 | 9e-44 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.657 | 0.427 | 0.265 | 3e-43 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.803 | 0.672 | 0.260 | 3e-43 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.852 | 0.695 | 0.261 | 7e-43 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.795 | 0.650 | 0.265 | 2e-41 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.749 | 0.519 | 0.252 | 4e-41 |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/432 (42%), Positives = 269/432 (62%)
Query: 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N I K GD +A+ LL QA G + + S+I ALA GRTLEA+A+F+E+
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
G P+ R YN LL+G++K G L ++ ME G+ ++ TY +L+D +VNAGR +
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
+++ EM + Q NSFV+ +++ +RD G W+K +++E++ +G+ DRQ YN +ID
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
TFGK+ L A+ F++M E I PD VTWN+LI HCK G A E+F M+ +G P
Sbjct: 453 TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLP 512
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
+ +I+ G+ +WD +K+ MK +G + LVD+YG+ GRF D EC+
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
+K GL+PS +M+ L NAYAQ+GL EQ V ++M +G++P+L+ LN LINAFG
Sbjct: 573 EEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500
+ EA +V MK+ G+ PD+VTY+TLMKA IR KF KVP +Y++M SGC PDRKAR
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKAR 692
Query: 501 QILQSALVVLEQ 512
+L+SAL ++Q
Sbjct: 693 SMLRSALRYMKQ 704
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFZ2|PP402_ARATH Putative pentatricopeptide repeat-containing protein At5g36300 OS=Arabidopsis thaliana GN=At5g36300 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 169/420 (40%), Positives = 228/420 (54%), Gaps = 103/420 (24%)
Query: 71 SGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130
S S + YN I+Y C+ G+ +EAM+LLA++ +LG P +SY S IE LAS+ RTLE
Sbjct: 5 SHTRISLSMYNSWIRYFCRTGETNEAMSLLAEIHSLGSRPDPLSYVSFIETLASLRRTLE 64
Query: 131 ADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188
ADA+F E+V F + +R YN L+ +L+K
Sbjct: 65 ADALFHEVVRFMIYGSYSVRLYNALVSRYLRK---------------------------- 96
Query: 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248
+ +W ++NEM+ + F+LNSFVYGK+I +YRDNGMWKKA+GIVEEIRE+GL
Sbjct: 97 ----------EVSWRVVNEMKKRKFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIREIGL 146
Query: 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKAL 307
+D +IYNS+IDTFGKYGEL E L+V EK+Q+ S RP+I TWNSLIRWHC G V AL
Sbjct: 147 PMDVEIYNSVIDTFGKYGELDEELQVLEKLQRSSDSRPNIRTWNSLIRWHCHHGAVDMAL 206
Query: 308 ELFTQMQEQGFYPDPKIFITIISCLGEL-GKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366
ELFT + E +GEL GK +K +G ++ L +
Sbjct: 207 ELFTMIFED---------------IGELVGK----------LKSQGVAPSANLFCTLANA 241
Query: 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426
Y Q G + + + ++ EG++P+ M +L NA
Sbjct: 242 YAQQGLCKQTVKVLKMMENEGIEPNLIMLNVLINA------------------------- 276
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMKAFIRAKKFHKVPEIY 485
FG AGK+ EALS+YH +K+ + I PD+VTYSTLMKAF RAKK+ V Y
Sbjct: 277 ----------FGTAGKHMEALSIYHHIKETVWIHPDVVTYSTLMKAFTRAKKYEMVCSFY 326
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 211/421 (50%), Gaps = 3/421 (0%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE-ADAIFQEMVCFGFNPKL 147
+L ID+A++++ QA GF P +SY ++++A R + A+ +F+EM+ +P +
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
YNIL+RGF G + + L ME G N TY L+D + ++DD + ++
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 208 MRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266
M KG + N Y VI GL R+ G K+ ++ E+ G SLD YN++I + K G
Sbjct: 266 MALKGLEPNLISYNVVINGLCRE-GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324
Query: 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI 326
+AL + +M + + P ++T+ SLI CKAG++ +A+E QM+ +G P+ + +
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386
T++ + G + + M D G Y L++ + G+ D + +K +
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 387 GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
GL P + + + + + ++ ++V + M +GI+P+ + + LI F + KEA
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
+Y M +G+ PD TY+ L+ A+ K +++ +M G PD +L +
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 507 L 507
L
Sbjct: 565 L 565
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 192/408 (47%), Gaps = 34/408 (8%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148
K G + A + +Q GF SY SLI A A+ GR EA +F++M G P L
Sbjct: 185 KEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLI 244
Query: 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208
YN++L F K MG N+ T ++ +M
Sbjct: 245 TYNVILNVFGK----------------MGTPWNKITS------------------LVEKM 270
Query: 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268
+S G +++ Y +I + + ++A + EE++ G S D+ YN+++D +GK
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328
EA++V +M P IVT+NSLI + + G + +A+EL QM E+G PD + T+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388
+S GK + FE M++ G + + +YG G+F + + + + GL
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448
P + L + Q G+ + V + M+ G P N LI+A+ G +++A++
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
VY M D G++PDL TY+T++ A R + + ++ +ME C P+
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPN 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 197/419 (47%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C G + EA+AL+ +M + P ++ ++LI L GR EA + MV +GF P
Sbjct: 151 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y +L K G L L ME+ I + Y I++D G DD + NE
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M KG + + Y +IG ++G W ++ E+ + D ++++ID F K G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA E++ +M I PD +T+NSLI CK + +A ++F M +G PD +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + + D + F + +G Y LV + Q G+ +E + G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ PS + IL + G + +++ + M+ + + + N++I+ A K +A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
S++ + D G+ PD+VTY+ ++ + + ++++M+ GCTPD IL A
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 202/414 (48%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY I K GD D+A + +M G P ++Y S+I AL +A + M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198
V G P YN +L G+ G L M G+ + TY +L+DY GR
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ I + M +G + YG ++ Y G + G+++ + G+ D +++ +
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377
Query: 259 IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
I + K G++ +A+ VF KM+Q+ + P+ VT+ ++I CK+G V A+ F QM ++G
Sbjct: 378 ICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 437
Query: 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEE 378
P ++ ++I L KW+ ++ M DRG + ++D + + GR + E+
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 497
Query: 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438
+ G++P+ + L N Y G ++ +K+L M G++PN V + LIN +
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492
+ ++AL ++ M+ G+SPD++TY+ +++ + ++ E+Y ++ SG
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 201/419 (47%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I EA+AL+ QM +G+ P ++++ +L+ L + EA A+ + MV G P L
Sbjct: 146 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 205
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ++ G K+G L LL ME I + Y ++D +DD + E
Sbjct: 206 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + + F Y +I + G W A ++ ++ E ++ + +NS+ID F K G+
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA ++F++M Q SI P+IVT+NSLI C + +A ++FT M + PD + T
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + K + F +M RG Y L+ + Q + + + +G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ P+ + L + + G E+ + V + ++ +EP++ N++ AGK ++
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
++ + G+ PD++ Y+T++ F + + ++ +M+ G PD L A
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 214/452 (47%), Gaps = 14/452 (3%)
Query: 73 EEFSGNSYNKSIQYCCKLGDI--DEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130
+FSG Y+ +L D+ D+A+ L M PS + ++ L+ A+A + +
Sbjct: 40 RDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL 99
Query: 131 ADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190
++ ++M G + L Y+IL+ F ++ L L +L M +G + T LL+
Sbjct: 100 VISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLS 249
+ R+ D ++ +M G+Q +SF + +I GL+R N +AV +V+ + G
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHN-RASEAVALVDRMVVKGCQ 218
Query: 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309
D Y +++ K G++ AL + +KM+Q I P +V +N++I C +V AL L
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ 369
FT+M +G P+ + ++I CL G+W + +M +R ++ L+D + +
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429
G+ + E+ + + P + L N + ++ + +LM + PN+V
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489
N LI F A + E + ++ M G+ + VTY+TL+ F +A++ ++KQM
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 490 SSGCTPDRKARQIL----------QSALVVLE 511
S G PD IL ++ALVV E
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFE 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 209/444 (47%), Gaps = 35/444 (7%)
Query: 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I EA+AL+ QM + + P+++++ +LI L + EA A+ MV G P L
Sbjct: 161 CHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 220
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ++ G K+G + L LL ME I + Y ++D N ++D + E
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + N Y +I + G W A ++ ++ E ++ + ++++ID F K G+
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 268 LVEALEVFEKMQQESIRPDI-----------------------------------VTWNS 292
LVEA +++++M + SI PDI VT+N+
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352
LI+ CKA V + +ELF +M ++G + + T+I L + G D+ +K F+ M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412
Y+IL+D +YG+ L+ ++P + I+ + G E
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
+ + +G++PN+++ +I+ F G +EA +++ MK+ G P+ TY+TL++A
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 473 IRAKKFHKVPEIYKQMESSGCTPD 496
+R E+ K+M S G D
Sbjct: 581 LRDGDKAASAELIKEMRSCGFVGD 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 200/420 (47%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY+ + C+ G++D+ L+ M+ G P+S Y S+I L + + EA+ F EM
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198
+ G P Y L+ GF K+G + S+ M I + TY ++ G +
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ + +EM KG + +S + ++I Y G K A + + + G S + Y ++
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462
Query: 259 IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
ID K G+L A E+ +M + ++P+I T+NS++ CK+G++ +A++L + + G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522
Query: 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEE 378
D + T++ + G+ D ++ + M +G + +L++ + +G D E+
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582
Query: 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438
+ + +G+ P+ + F L Y + + + + M G+ P+ L+
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498
A KEA ++ MK G S + TYS L+K F++ KKF + E++ QM G D++
Sbjct: 643 KARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| 255557939 | 498 | pentatricopeptide repeat-containing prot | 0.879 | 0.907 | 0.730 | 0.0 | |
| 359490014 | 494 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.919 | 0.709 | 0.0 | |
| 356540373 | 881 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.515 | 0.673 | 0.0 | |
| 356495758 | 554 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.837 | 0.653 | 1e-179 | |
| 147778635 | 466 | hypothetical protein VITISV_005528 [Viti | 0.836 | 0.922 | 0.665 | 1e-175 | |
| 410129734 | 517 | bvCRP-1 [Beta vulgaris] | 0.976 | 0.970 | 0.583 | 1e-169 | |
| 297801170 | 448 | hypothetical protein ARALYDRAFT_330235 [ | 0.834 | 0.957 | 0.620 | 1e-160 | |
| 297725255 | 492 | Os06g0710800 [Oryza sativa Japonica Grou | 0.879 | 0.918 | 0.573 | 1e-155 | |
| 357123699 | 492 | PREDICTED: pentatricopeptide repeat-cont | 0.871 | 0.910 | 0.567 | 1e-153 | |
| 326527817 | 491 | predicted protein [Hordeum vulgare subsp | 0.852 | 0.892 | 0.564 | 1e-144 |
| >gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/452 (73%), Positives = 395/452 (87%)
Query: 62 SIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA 121
S+ P ++G+E SG SYN I CCK+GD+D+AM LLA MQ+LGFHPSS+SY LIE
Sbjct: 6 SVTMPTNESTGQELSGESYNSCICDCCKVGDVDKAMTLLADMQSLGFHPSSLSYTCLIET 65
Query: 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
L SVGRTLEA+A++QEM+CFG P+L+ YNI+LRGFLKKGLL + R+L +++D+G+ RN
Sbjct: 66 LLSVGRTLEAEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRN 125
Query: 182 QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241
QETYEILLDY+VNAGRL+DTW +INEM+ KGFQLNSFVY KVIGLYRDNGMWKKA+GI+E
Sbjct: 126 QETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIE 185
Query: 242 EIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG 301
EIREMG+ LD+ IYNSIIDTFGKYGEL EALEV MQQ+ I PDIVTWNSLIRWHCKAG
Sbjct: 186 EIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAG 245
Query: 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361
+++KALELF++MQ QG YPDPKI +TIIS L E GKW++I++NF+ MK G+ K GAIYA
Sbjct: 246 NLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYA 305
Query: 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421
ILVDIYGQYGRF+D EECI+ALK EG+ PS SMFC+LANAYAQQGLCEQTVKVLQLME E
Sbjct: 306 ILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAE 365
Query: 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481
GIEPNL+MLNVLINAFG+AG+++EALS+YH MK+ GISPD+VTYSTLMKA+IRA+KF +V
Sbjct: 366 GIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEV 425
Query: 482 PEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
PEIY +MESSGCTPD+KAR+ILQ+AL+VL +R
Sbjct: 426 PEIYSEMESSGCTPDKKAREILQAALMVLGRR 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/454 (70%), Positives = 384/454 (84%)
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+S++ S +GEE SG YN I+ C++GD+D+AM LLAQM+ALGF S SY ++I
Sbjct: 6 QVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVI 65
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
EAL SVGRTLEA+AIF+EMV G LR YN++LR L+KGLL L ++L M+ +GI
Sbjct: 66 EALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIG 125
Query: 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239
RN+ TYE L+DY+ AGRL+D W +I EM GF +SFVY KVIG+YRDNGMWKKA+ I
Sbjct: 126 RNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEI 185
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
V EIREMG+SLD++IYNSIIDTFGK GEL EALEVFEKMQ+E ++PDI+TWNSLI+WHCK
Sbjct: 186 VREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCK 245
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
AGDV KALELF++MQE+G YPDPKIFITIIS LGE GKWDVIK+NFENMK RGH + GAI
Sbjct: 246 AGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAI 305
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
YAILVDIYGQYGRF+ PEECI+ALK EG+QPS SMFC+LANAYAQQGLCEQTVKVLQLME
Sbjct: 306 YAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLME 365
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
EGIEPNL+MLN+LINAFG+AG++ EALSVYH +KD GISPD+VTYSTLMKA IRA+KF
Sbjct: 366 TEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFD 425
Query: 480 KVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
KVPEIY++MES+GCTPDRKAR++LQ+AL+VL+QR
Sbjct: 426 KVPEIYEEMESAGCTPDRKAREMLQTALLVLQQR 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/457 (67%), Positives = 377/457 (82%), Gaps = 3/457 (0%)
Query: 59 KNLSIKSPD-GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS 117
K +SPD G N EE S N ++ I CCK GD+D AM+LL+QM+A GFH SS SYA
Sbjct: 67 KTTLFRSPDIGEN--EELSSNLCSQLICECCKEGDLDRAMSLLSQMEAKGFHLSSTSYAC 124
Query: 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177
LIEAL +VGRT EAD +F+EMVC+G+ PKL Y+ LLRGFLKKGLLGL + +L M+D+G
Sbjct: 125 LIEALGNVGRTSEADMLFKEMVCYGYKPKLNLYHSLLRGFLKKGLLGLANGVLKEMDDLG 184
Query: 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237
I R++ETY+I LDY+V AGRL+DTW INEM+ KGF LNSF+Y KV+G+YRDNGMWKKA+
Sbjct: 185 IWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAI 244
Query: 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297
++EEIRE G+SLD I NSIIDTFGKYGEL EAL++F+KMQ+E +RP+IVTWNSLI+WH
Sbjct: 245 EVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWH 304
Query: 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357
CK GD KA LFT MQEQG YPDPKIF+TIISCLGE GKWD+IKK FE+MK RG+ + G
Sbjct: 305 CKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGEQGKWDIIKKYFESMKIRGNKEYG 364
Query: 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQL 417
A+YA+LVDIYGQYG+F++ EC+ ALK EG+ S S+FC+LANAYAQQGLCEQ + VLQ+
Sbjct: 365 AVYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQI 424
Query: 418 MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477
ME EGIEPN+VMLN+LINAFG AG+Y EA+SVYH +K+ G+SPD+VTY+TLMKAFIRAKK
Sbjct: 425 MEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKK 484
Query: 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRR 514
F +VP IYK+ME+ GCTPDRKARQ+LQ AL +++ R
Sbjct: 485 FDEVPIIYKEMENDGCTPDRKARQMLQVALTLIDHDR 521
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/468 (65%), Positives = 377/468 (80%), Gaps = 4/468 (0%)
Query: 48 VKE-GYAYSLGNKNLSIKSPD-GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQA 105
VKE G + +K + K PD G N EE S N ++ I CCK GD+D AM+LL+QM+A
Sbjct: 52 VKEVGSEFDSKSKTMLFKIPDIGEN--EELSSNLCSQFICECCKEGDLDRAMSLLSQMEA 109
Query: 106 LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165
GFH SS +YA LIEAL +VGRT EAD +F+EM+C G+ PKL FY LLRGFLKKGLLGL
Sbjct: 110 KGFHLSSTAYACLIEALGNVGRTSEADMLFKEMICDGYKPKLNFYTSLLRGFLKKGLLGL 169
Query: 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225
+ +L M+ GI R++ETY+I LDY+V AGRL+DTW IN M+ KGF LNSFVY KV+G
Sbjct: 170 ANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLNSFVYSKVVG 229
Query: 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285
+YRDNGMWKKA+ ++EEIRE G+SLD I NSIIDTFGKYGEL EAL++F+KMQ+E +RP
Sbjct: 230 IYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRP 289
Query: 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345
+IVTWNSLI+WHCK GD K+ LFT MQEQG YPDPKIF+TIISC+GE GKW +IKK F
Sbjct: 290 NIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYF 349
Query: 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405
E+MK RG+ + GA+YA+LVDIYGQYG+F++ EC+ ALK EG+ S S+FC+LANAYAQQ
Sbjct: 350 ESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQ 409
Query: 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465
GLCEQ + VLQ+ME EGIEPN+VMLN+LINAFG AG+Y EA+SVYH +K+ G+SPD+VTY
Sbjct: 410 GLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESGVSPDVVTY 469
Query: 466 STLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
+TLMKAFIRAKKF +VP IYK+ME+ CTPDRKARQ+LQ AL+ E++
Sbjct: 470 TTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKARQMLQVALMFEERK 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/454 (66%), Positives = 362/454 (79%), Gaps = 24/454 (5%)
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+S++ S +GEE SG YN I+ C++GD+D+AM LLAQM+ALGF S SY ++I
Sbjct: 25 QVSVEEVSISENGEELSGVVYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVI 84
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
EAL SVGRTLEA+AIF+EMV G LR YN++LR L+KGLL L ++L M+ +GI
Sbjct: 85 EALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIG 144
Query: 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239
RN+ TYE L+DY+ AGRL+D W +I EM GF +SFVY KVIG+YRDNGMWKKA+ I
Sbjct: 145 RNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEI 204
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
V EIREMG+SLD++IYNSIIDTFGK GEL EALEVFEKMQ+E ++PDI+TWNSLI+WHCK
Sbjct: 205 VREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCK 264
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
AGDV KALELF++MQE+G YPDPKIFITIIS LGE GKWDVIK+NFENMK RGH + GAI
Sbjct: 265 AGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAI 324
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
YAILVDIYGQYGRF+ PEECI+ALK EG+QPS SMFC+LANAYAQQGLCEQTVKVLQLME
Sbjct: 325 YAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLME 384
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
EGIEPNL+MLN+LINAFG+AG++ EALSVYH +KD
Sbjct: 385 TEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKD------------------------ 420
Query: 480 KVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
VPEIY++MES+GCTPDRKAR++LQ+AL+VL+QR
Sbjct: 421 TVPEIYEEMESAGCTPDRKAREMLQTALLVLQQR 454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|410129734|dbj|BAM64814.1| bvCRP-1 [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/507 (58%), Positives = 381/507 (75%), Gaps = 5/507 (0%)
Query: 6 TISLLPIHGTSPLSVFFSTHSSSREHAGHKLNSSCHSGMRRCVKEGYAYSLGN-KNLSIK 64
T S+ P + S L F H R + SC S + G SL N N K
Sbjct: 13 TPSIFPRYPISFLISSFYPHFPKRTNKPSIYTCSCFS----IFQIGTTKSLENLPNSYNK 68
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
S G+E S Y++ I + CK G +D+AM+ ++++QALG P+ Y LIE L +
Sbjct: 69 SFMEYPIGKELSLEMYSEKISHYCKKGYVDKAMSCISEIQALGLCPNLFCYLCLIEGLGN 128
Query: 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184
VGRTLE + +FQEM+ G P + +N++LRGFL+KGL L +R L VMED+G+C+NQET
Sbjct: 129 VGRTLEVEMVFQEMLYLGLRPNIVVFNVMLRGFLRKGLYKLANRALRVMEDLGMCKNQET 188
Query: 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244
EI LDY+V+ RL DTW II +M+ KG+QLNSF Y +VI LYRDNGMWKKA+ IV EI
Sbjct: 189 LEIFLDYYVSGRRLSDTWRIIGDMKRKGYQLNSFAYSRVIELYRDNGMWKKAMEIVGEIS 248
Query: 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304
EMG+ +DR+IYNSIIDTFGKYGEL EAL+V KM++E I PDI+TWNSLI+WHCKAGD
Sbjct: 249 EMGVPMDRRIYNSIIDTFGKYGELDEALKVLVKMRREEIVPDIMTWNSLIKWHCKAGDHM 308
Query: 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
KAL+LFT+MQ+QG YPDPKIFI +IS LG LGKWD++++NFE MK RGH K GA+YA+LV
Sbjct: 309 KALDLFTEMQDQGLYPDPKIFIILISQLGNLGKWDLLRENFEKMKYRGHKKSGAVYAVLV 368
Query: 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424
DIYGQYG+F+ E+CI+AL+ EG+Q S +++ ++ANAYAQQGLCE+TVKVLQ+ME EGIE
Sbjct: 369 DIYGQYGKFQGAEDCISALRAEGVQMSSNIYSVMANAYAQQGLCEETVKVLQVMEAEGIE 428
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484
PNL+MLN+LINAFG+AG++ EALS+Y + + GI+PD+VTY+TLMKA IRAKKF KVPE+
Sbjct: 429 PNLIMLNILINAFGIAGRHLEALSIYDHIIENGINPDIVTYTTLMKALIRAKKFTKVPEL 488
Query: 485 YKQMESSGCTPDRKARQILQSALVVLE 511
Y+ ME +GCTPDRKAR++LQ AL+ L+
Sbjct: 489 YQHMELAGCTPDRKAREMLQIALMHLQ 515
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp. lyrata] gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/432 (62%), Positives = 349/432 (80%), Gaps = 3/432 (0%)
Query: 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139
YN+ I+YCC+ G+I+EAM+L+A++ +LG HP +SY SLIE LAS+GRTLEADA+FQE+V
Sbjct: 2 YNRWIRYCCRTGEINEAMSLVAEIDSLGSHPDPLSYVSLIETLASLGRTLEADALFQEVV 61
Query: 140 CFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197
F N +R YN LL G+L+KG L L R+L M++ + +NQET EILL+Y+V+AGR
Sbjct: 62 RFRINGSYSVRLYNALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGR 121
Query: 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257
L+++W ++NEM+ + F+LNSFVYGK+I +YRDNGMWKKA+GIVEEI+E+GL +D +IYNS
Sbjct: 122 LEESWRVVNEMKKRMFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNS 181
Query: 258 IIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316
IIDTFGKYGEL EAL+V EKMQ S +P+I TWNSLIRWHC G + ALELFT MQ+Q
Sbjct: 182 IIDTFGKYGELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQ 241
Query: 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376
G YPDP++F+ +I+ LGE G W++I K+FE++K + H AIYA LV I GQ+G F+D
Sbjct: 242 GLYPDPRMFVNLITRLGENGNWNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGSFQDV 301
Query: 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436
EE + LK +G+ PS ++FC ANAYAQQGL +QTVKVL++ME EGIEPNL+MLNVLINA
Sbjct: 302 EELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINA 361
Query: 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
FG AGK+ EALS+YH +K+ G +PD+VTYSTLMKAF RAKK+ KVPEI+++ME+SGCT D
Sbjct: 362 FGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKKYEKVPEIFREMEASGCTAD 421
Query: 497 RKARQILQSALV 508
RKARQ+LQ+A +
Sbjct: 422 RKARQLLQNAFM 433
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297725255|ref|NP_001174991.1| Os06g0710800 [Oryza sativa Japonica Group] gi|53792631|dbj|BAD53645.1| putative crp1 protein [Oryza sativa Japonica Group] gi|215693375|dbj|BAG88757.1| unnamed protein product [Oryza sativa Japonica Group] gi|255677390|dbj|BAH93719.1| Os06g0710800 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/453 (57%), Positives = 334/453 (73%), Gaps = 1/453 (0%)
Query: 61 LSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE 120
++ ++ G +E SY++ IQ+ D+ ++ LLA MQA G PS +YA LI
Sbjct: 36 VACRATAGPVGSQERPWESYDRGIQHHAG-SDLASSLRLLADMQAAGLRPSGAAYARLIR 94
Query: 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR 180
ALA GRTLEA+A+ EM G P YN LL G L L L RLL+ M D G+ R
Sbjct: 95 ALARAGRTLEAEALLLEMRRLGLRPDAAHYNALLEGLLSTAHLRLADRLLLQMADDGVAR 154
Query: 181 NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240
N+ TY +LL+ + AGRL+D+W ++ EM+ +G +L++ Y ++ LYRDNGMWKKA ++
Sbjct: 155 NRRTYMLLLNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLI 214
Query: 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300
E++E+G+ LD +IYN +IDTFGKYG+L +A +VF+KM E ++PDI TWNSLIRWHC+
Sbjct: 215 MEMQELGVELDVKIYNGLIDTFGKYGQLADARKVFDKMCAEGVKPDITTWNSLIRWHCRV 274
Query: 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360
G+ +AL F MQE+G YPDPKIF+TIIS LGE GKWD IKK F M++RG + GA+Y
Sbjct: 275 GNTKRALRFFAAMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVY 334
Query: 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420
A+LVDIYGQYG FRD +C+AALK E LQ S S+FC+LANAYAQQGLCEQTV VLQLME
Sbjct: 335 AVLVDIYGQYGHFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEA 394
Query: 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480
EGIEPNLVMLN+LINAFG AG++ EAL+V +KD G+SPD+VTY+TLMKAF+RAKKF K
Sbjct: 395 EGIEPNLVMLNLLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEK 454
Query: 481 VPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513
V E+YK+ME +GCTPDRKAR++L A +VLEQR
Sbjct: 455 VSEVYKEMEGAGCTPDRKAREMLNDASIVLEQR 487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/449 (56%), Positives = 330/449 (73%), Gaps = 1/449 (0%)
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
S + +E SYN+ IQ D+ ++ +LA M+A G PS+ +YA LI ALA
Sbjct: 42 STAADHHRQERPWESYNRDIQPHAS-SDLAHSLHVLADMEAAGMRPSAAAYARLIRALAR 100
Query: 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184
GRTLEA+A+ EM G P YN LL G L + L L RLL+ M D G+ RN+ T
Sbjct: 101 AGRTLEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLCLADRLLLQMADDGVARNRRT 160
Query: 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244
Y +LLD + AGRL+D+W ++ EM+ +G QL++ Y ++ LYRDNGMWKKA ++ E++
Sbjct: 161 YMLLLDAYARAGRLEDSWWVLGEMKRRGIQLDTAGYSTLVRLYRDNGMWKKATDLIMEMQ 220
Query: 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304
E+G+ LD +IYN +IDTFGKYG+L +A +FEKM+ E I+PDI TWN+LIRWHC+ G++
Sbjct: 221 ELGVELDVKIYNGLIDTFGKYGQLADARRLFEKMRAEGIKPDIATWNALIRWHCRVGNMK 280
Query: 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
+AL F MQE+G YPDPKIF++IIS LGE GKWD +KK F+ M++RG + GA+YA+LV
Sbjct: 281 RALRFFAAMQEEGMYPDPKIFMSIISRLGEQGKWDELKKLFDKMRNRGLKESGAVYAVLV 340
Query: 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424
DIYGQYGRFRD EC+AALK E L S S+FC+LANAYAQQGLCEQTV VLQLME EGIE
Sbjct: 341 DIYGQYGRFRDAHECVAALKAEELHLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIE 400
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484
PNLVMLN+LINAF AG++ EA++V+ +KD G+SPD+VTY+TLMK F+R KKF KV E+
Sbjct: 401 PNLVMLNLLINAFSTAGRHLEAVAVFQHIKDSGMSPDVVTYTTLMKGFMRVKKFEKVSEV 460
Query: 485 YKQMESSGCTPDRKARQILQSALVVLEQR 513
Y +ME +GCTPDRKAR++L A V LEQR
Sbjct: 461 YNEMERAGCTPDRKAREMLHDASVTLEQR 489
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/439 (56%), Positives = 325/439 (74%), Gaps = 1/439 (0%)
Query: 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADA 133
E SY++ IQ D+ ++ LLA MQA G PS+ +YA LI ALA GR LEA+A
Sbjct: 50 ERPWESYDRDIQPHAG-SDLARSLQLLADMQAAGMRPSAAAYARLIRALARAGRALEAEA 108
Query: 134 IFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193
+ EM G P YN LL G L + L L RLL+ M D G+ RN+ TY +LLD +
Sbjct: 109 LLLEMRHLGLRPDAAHYNALLEGLLARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYA 168
Query: 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ 253
AGRL+D+W ++ EM+ G +L++ Y ++ LYRD+GMWKKA ++ E++E+G+ LD +
Sbjct: 169 RAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVK 228
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313
IYN +IDTFGKYG+L +A ++FEKM+ + I+PDI TWN+LIRWHC+ G++ +AL M
Sbjct: 229 IYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAM 288
Query: 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRF 373
QE+G YPDPKIFITII+ LGE GKWD +K+ F+ M++RG + GAIYA+LVDIYGQYG F
Sbjct: 289 QEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHF 348
Query: 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVL 433
RD +EC+AALK E LQ S S+FC+LANAYAQQGLCEQTV VLQLME EGIEPNLVMLN+L
Sbjct: 349 RDAQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLL 408
Query: 434 INAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493
INAF AG++ EA +V+ +KD G+SPD+VTY+TLMKAF+R K++ KV E+Y +ME +GC
Sbjct: 409 INAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGC 468
Query: 494 TPDRKARQILQSALVVLEQ 512
TPDRKAR++L A V +EQ
Sbjct: 469 TPDRKAREMLHDASVTMEQ 487
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.840 | 0.609 | 0.400 | 1e-84 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.813 | 0.559 | 0.256 | 4.6e-40 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.735 | 0.461 | 0.262 | 1.6e-37 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.747 | 0.615 | 0.259 | 1.6e-36 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.809 | 0.672 | 0.245 | 7.2e-36 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.772 | 0.630 | 0.248 | 6.3e-35 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.795 | 0.649 | 0.237 | 3.8e-33 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.809 | 0.570 | 0.244 | 1.1e-32 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.803 | 0.451 | 0.240 | 1.5e-32 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.809 | 0.677 | 0.233 | 1.5e-32 |
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 173/432 (40%), Positives = 252/432 (58%)
Query: 81 NKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N I K GD + G + + S+I ALA GRTLEA+A+F+E+
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 141 FGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
G P+ R YN ME G+ ++ TY +L+D +VNAGR +
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
+++ EM + Q NSFV+ +++ +RD G W+K +++E++ +G+ DRQ YN +ID
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVID 452
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
TFGK+ L A+ F++M E I PD VTWN+LI HCK G A E+F M+ +G P
Sbjct: 453 TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLP 512
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
+ +I+ G+ +WD +K+ MK +G + LVD+YG+ GRF D EC+
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
+K GL+PS +M+ L NAYAQ+GL EQ V ++M +G++P+L+ LN LINAFG
Sbjct: 573 EEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500
+ EA +V MK+ G+ PD+VTY+TLMKA IR KF KVP +Y++M SGC PDRKAR
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKAR 692
Query: 501 QILQSALVVLEQ 512
+L+SAL ++Q
Sbjct: 693 SMLRSALRYMKQ 704
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 4.6e-40, P = 4.6e-40
Identities = 108/421 (25%), Positives = 195/421 (46%)
Query: 89 KLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLE-ADAIFQEMVCFGFNPKL 147
+L ID+ GF P +SY ++++A R + A+ +F+EM+ +P +
Sbjct: 146 RLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNV 205
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
YNI ME G N TY L+D + ++DD + ++
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 208 MRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266
M KG + N Y VI GL R+ G K+ ++ E+ G SLD YN++I + K G
Sbjct: 266 MALKGLEPNLISYNVVINGLCRE-GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEG 324
Query: 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI 326
+AL + +M + + P ++T+ SLI CKAG++ +A+E QM+ +G P+ + +
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386
T++ + G + + M D G Y L++ + G+ D + +K +
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 387 GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
GL P + + + + + ++ ++V + M +GI+P+ + + LI F + KEA
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506
+Y M +G+ PD TY+ L+ A+ K +++ +M G PD +L +
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 507 L 507
L
Sbjct: 565 L 565
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 101/385 (26%), Positives = 180/385 (46%)
Query: 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMED 175
A +I L GR A +F + GF+ + Y ME+
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 176 MGICRNQETYEILLDYHVNAGRLDDTW----LIINEMRSKGFQLNSFVYGKVIGLYRDNG 231
G TY ++L+ G++ W ++ +M+S G +++ Y +I +
Sbjct: 237 DGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGS 293
Query: 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291
+ ++A + EE++ G S D+ YN+++D +GK EA++V +M P IVT+N
Sbjct: 294 LHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYN 353
Query: 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351
SLI + + G + +A+EL QM E+G PD + T++S GK + FE M++
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413
Query: 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411
G + + +YG G+F + + + + GL P + L + Q G+ +
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473
Query: 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471
V + M+ G P N LI+A+ G +++A++VY M D G++PDL TY+T++ A
Sbjct: 474 SGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Query: 472 FIRAKKFHKVPEIYKQMESSGCTPD 496
R + + ++ +ME C P+
Sbjct: 534 LARGGMWEQSEKVLAEMEDGRCKPN 558
|
|
| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 100/386 (25%), Positives = 182/386 (47%)
Query: 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVM 173
S ++E L G ++ + +E G P+ YN VM
Sbjct: 226 SLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVM 285
Query: 174 EDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233
+ G+ N+ TY +L++ V G++ D + +EMR +G + + VY +I G
Sbjct: 286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNM 345
Query: 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSL 293
K+A + +E+ E GLS Y ++ID K GE+ A + +MQ + + V +N+L
Sbjct: 346 KRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTL 405
Query: 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353
I +C+ G V +A ++ M+++GF D TI SC L ++D K+ M + G
Sbjct: 406 IDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGV 465
Query: 354 GKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412
K+ + Y L+D+Y + G + + + +G+QP+ + ++ AY +QG ++
Sbjct: 466 -KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524
Query: 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
K+ ME G++P+ LI+ +A EA+ ++ M G+ + VTY+ ++
Sbjct: 525 KLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGL 584
Query: 473 IRAKKFHKVPEIYKQMESSGCTPDRK 498
+A K + +Y +M+ G T D K
Sbjct: 585 SKAGKSDEAFGLYDEMKRKGYTIDNK 610
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 102/416 (24%), Positives = 182/416 (43%)
Query: 88 CKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C G + E P ++ ++LI L GR EA + MV +GF P
Sbjct: 151 CLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y ME+ I + Y I++D G DD + NE
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M KG + + Y +IG ++G W ++ E+ + D ++++ID F K G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
L+EA E++ +M I PD +T+NSLI CK + +A ++F M +G PD +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I+ + + D + F + +G Y LV + Q G+ +E + G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ PS + IL + G + +++ + M+ + + + N++I+ A K +A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503
S++ + D G+ PD+VTY+ ++ + + ++++M+ GCTPD IL
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 383 (139.9 bits), Expect = 6.3e-35, P = 6.3e-35
Identities = 99/399 (24%), Positives = 183/399 (45%)
Query: 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIXXXXXXXXXXXXXXXXX 169
PS + ++ L+ A+A + + ++ ++M G + L Y+I
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 170 XMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYR 228
M +G + T LL+ + R+ D ++ +M G+Q +SF + +I GL+R
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288
N +AV +V+ + G D Y +++ K G++ AL + +KM+Q I P +V
Sbjct: 199 HNRA-SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348
+N++I C +V AL LFT+M +G P+ + ++I CL G+W + +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408
+R ++ L+D + + G+ + E+ + + P + L N +
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTL 468
++ + +LM + PN+V N LI F A + E + ++ M G+ + VTY+TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 469 MKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507
+ F +A++ ++KQM S G PD IL L
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 3.8e-33, P = 3.8e-33
Identities = 97/409 (23%), Positives = 181/409 (44%)
Query: 88 CKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
C I E G+ P+++++ +LI L + EA A+ MV G P L
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221
Query: 148 RFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207
Y + ME + Y ++D +DD + E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 208 MRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267
M +KG + N Y +I + G W A ++ ++ E ++ D ++++ID F K G+
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
LVEA +++++M + SI P IVT++SLI C + +A ++F M + +PD + T
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
+I + + + + F M RG Y IL+ Q G +E + +G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
+ P+ + L + + G E+ + V + ++ +EP + N++I AGK ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
++ + G+ PD+V Y+T++ F R + ++K+M+ G P+
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 102/418 (24%), Positives = 185/418 (44%)
Query: 81 NKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N + CK G +++ G +P ++Y +LI A +S G EA + M
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298
Query: 141 FGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
GF+P + YN M G+ + TY LL G + +
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
T + ++MRS+ + + ++ L+ +G KA+ ++E GL D IY +I
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
+ + G + A+ + +M Q+ D+VT+N+++ CK + +A +LF +M E+ +P
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
D +I +LG + F+ MK++ Y L+D +G+ G +E
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
A + + + P+ + IL NA +G + +V M + I+P +++ N +I + +
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPD 496
G + S M G PD ++Y+TL+ F+R + K + K+ME G PD
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 101/420 (24%), Positives = 182/420 (43%)
Query: 80 YNKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139
Y I C+ D+D G + ++Y LI L R EA +F +M
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK 315
Query: 140 ---CFGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAG 196
CF P +R Y + ME+ GI N TY +L+D +
Sbjct: 316 DDECF---PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256
+ + ++ +M KG N Y +I Y GM + AV +VE + LS + + YN
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316
+I + K + +A+ V KM + + PD+VT+NSLI C++G+ A L + M ++
Sbjct: 433 ELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376
G PD + ++I L + + + F++++ +G +Y L+D Y + G+ +
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436
+ + + P+ F L + G ++ + + M G++P + +LI+
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611
Query: 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
G + A S + M G PD TY+T ++ + R + ++ +M +G +PD
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 97/416 (23%), Positives = 184/416 (44%)
Query: 81 NKSIQYCCKLGDIDEXXXXXXXXXXXGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140
N + C I E G+ P ++++ +L+ L + EA A+ + MV
Sbjct: 139 NSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVV 198
Query: 141 FGFNPKLRFYNIXXXXXXXXXXXXXXXXXXMVMEDMGICRNQETYEILLDYHVNAGRLDD 200
G P L Y ME I + Y ++D +DD
Sbjct: 199 KGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDD 258
Query: 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260
+ EM +KG + + F Y +I + G W A ++ ++ E ++ + +NS+ID
Sbjct: 259 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLID 318
Query: 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
F K G+L+EA ++F++M Q SI P+IVT+NSLI C + +A ++FT M + P
Sbjct: 319 AFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378
Query: 321 DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380
D + T+I+ + K + F +M RG Y L+ + Q + +
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438
Query: 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440
+ +G+ P+ + L + + G E+ + V + ++ +EP++ N++ A
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498
Query: 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
GK ++ ++ + G+ PD++ Y+T++ F + + ++ +M+ G PD
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 514 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 93/409 (22%), Positives = 186/409 (45%), Gaps = 7/409 (1%)
Query: 91 GDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF 149
G I + + LL M+ G I +A +A EA F +++ NP L
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLI---RNPTLST 439
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209
+N+L+ + R+L ++++ G+ + + Y L+ +G++D + + +EM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 210 SKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269
+ G + N +G +I G KA G +R + DR ++N++I G+ G +
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 270 EALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327
A +V +M+ E+ I PD +T +L++ AG V +A E++ + E P+++
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
++ + G WD +++MK +G ++ LVD+ G G E + + +G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447
++ + L A + ++ +++ + ++ + P + +N LI A + +AL
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
V MK +G+ P+ +TYS L+ A R ++ Q + G P+
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 66/259 (25%), Positives = 126/259 (48%), Gaps = 9/259 (3%)
Query: 80 YNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQE 137
+N I C + G +D A +LA+M+A P I+ +L++A A+ G+ A ++Q
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 138 MVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVN 194
+ + Y I + +KG L + +DM G+ ++ + L+D +
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFA---LSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254
AG LD + I+ + R +G +L + Y ++G + WKKA+ + E+I+ + L
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314
N++I + +L +ALEV +M++ + P+ +T++ L+ + D L+L +Q +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 315 EQGFYPDPKIFITIIS-CL 332
E G P+ + I CL
Sbjct: 782 EDGIKPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 10/283 (3%)
Query: 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295
A+ ++ ++E GL D ++Y ++I T K G++ EVF +M + ++ T+ +LI
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK------ 349
+AG VAKA + M+ + PD +F +IS G+ G D MK
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409
D H +GA+ + GQ R + E + ++ + ++ I N+ +Q+G +
Sbjct: 576 DPDHITVGALMKACANA-GQVDRAK---EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469
+ + M+ +G++P+ V + L++ G AG +A + + GI V+YS+LM
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512
A AK + K E+Y+ ++S P L +AL Q
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 5e-22
Identities = 102/465 (21%), Positives = 202/465 (43%), Gaps = 63/465 (13%)
Query: 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTL 129
+SG E N+ + K G + +A L +M + S+ ++I L G
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYR 206
Query: 130 EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189
EA A+F+EM G + + R + ++LR G G +L + G+ + L+
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS 249
D + G ++D + + M K + + ++ Y +G ++A+ + E+R+ G+S
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 250 LD--------------------RQIYNSII---------------DTFGKYGELVEALEV 274
+D +Q + +I D + K+G + +A V
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334
F++M R ++++WN+LI + G KA+E+F +M +G P+ F+ ++S
Sbjct: 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 335 LGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393
G + + F++M + K A+ YA ++++ G+ G +E A ++ +P+ +
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL---DEAYAMIRRAPFKPTVN 495
Query: 394 MFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450
M+ L A L + L M PE + +V+LN+ + +G+ EA V
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS----SGRQAEAAKVV 551
Query: 451 HLMKDIGIS-PDLVTYSTLMK---AFIRAKKFH-KVPEIYKQMES 490
+K G+S T+ + K +F + H + EIY++++
Sbjct: 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-20
Identities = 86/389 (22%), Positives = 165/389 (42%), Gaps = 26/389 (6%)
Query: 94 DEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152
EA+ L ++A F + +Y +L+EA ++ A++ + GF P N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212
+L +K G+L RL M + RN ++ ++ V+AG + + + EM G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 213 FQLNSFVYGKVIGLYRDNGMWKKAVG--IVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270
+ V+ L G+ G + + + G+ D + ++ID + K G++ +
Sbjct: 220 SDAEPRTF--VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330
A VF+ M +++ V WNS++ + G +AL L+ +M++ G D F +I
Sbjct: 278 ARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP 390
L + K+ + G LVD+Y ++GR D + + L
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL-- 391
Query: 391 SGSMFCILANA----YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
I NA Y G + V++ + M EG+ PN V +++A +G ++
Sbjct: 392 ------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 447 LSVYHLM-KDIGISPDLVTYSTLMKAFIR 474
++ M ++ I P + Y+ +++ R
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-18
Identities = 85/429 (19%), Positives = 182/429 (42%), Gaps = 28/429 (6%)
Query: 68 GSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR 127
+ S + N ++ C G +++A+ LL MQ L +Y +L L R
Sbjct: 42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKR 100
Query: 128 TLEA-----DAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ 182
+E G +R N +L F++ G L + M + R+
Sbjct: 101 AVEEGSRVCSRALSSHPSLG----VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDL 152
Query: 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM---WKKAVGI 239
++ +L+ + AG D+ + + M G + + + + V+ R G + +
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCGGIPDLARGREV 209
Query: 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
+ G LD + N++I + K G++V A VF++M R D ++WN++I + +
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFE 265
Query: 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359
G+ + LELF M+E PD ++IS LG + ++ + G ++
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419
L+ +Y G + + E+ + ++ + +M + Y + GL ++ ++ LME
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI----SGYEKNGLPDKALETYALME 381
Query: 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479
+ + P+ + + +++A G + ++ L + G+ +V + L++ + + K
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 480 KVPEIYKQM 488
K E++ +
Sbjct: 442 KALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 8e-13
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 47/245 (19%)
Query: 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306
G D+ + N ++ K G L++A +F++M + ++ +W ++I AG+ +A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREA 208
Query: 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366
LF +M E G +P+ F+ ++ R +G+ A
Sbjct: 209 FALFREMWEDGSDAEPRTFVVML---------------------RASAGLGSARA----- 242
Query: 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426
GQ + LK G+ + C L + Y++ G E V M E
Sbjct: 243 -GQ-------QLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486
V N ++ + + G +EAL +Y+ M+D G+S D T+S +++ F R E K
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL----EHAK 345
Query: 487 QMESS 491
Q +
Sbjct: 346 QAHAG 350
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 2e-12
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472
P++V N LI+ + GK +EAL +++ MK GI P++ TYS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 44/272 (16%)
Query: 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306
G+ D + N+++D + + G + A F S D+V+WN L+ + G + A
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN---FENMKDRGHGKIGAI---- 359
+ELF +M E G PD +T IS L + ++ + F +M+++ I
Sbjct: 574 VELFNRMVESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYS-----ITPNL 625
Query: 360 --YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA---YAQQGLCEQTVKV 414
YA +VD+ G+ G+ + I + + P +++ L NA + L E +
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 415 LQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD----LVTYSTLMK 470
+ ++P + + +L N + AGK+ E V M++ G++ D V +
Sbjct: 683 IFELDPNSVGYYI----LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738
Query: 471 AFIRAKKFH-KVPEI-------YKQMESSGCT 494
AF+ + H ++ EI Y++M++SG
Sbjct: 739 AFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCL 332
PD+VT+N+LI +CK G V +AL+LF +M+++G P+ + +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299
YN++ID + K G++ EAL++F +M++ I+P++ T++ LI CK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 75/315 (23%)
Query: 233 WKKAVGIVEEIREMGLS----LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288
WK+AV + LS L ++ N+++ F ++GELV A VF KM + D+
Sbjct: 98 WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLF 153
Query: 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKW--------DV 340
+WN L+ + KAG +AL L+ +M G PD F ++ G + V
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 341 IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILAN 400
++ FE D + L+ +Y + G + ++A + P CI N
Sbjct: 214 VRFGFELDVD--------VVNALITMYVKCG------DVVSARLVFDRMPR--RDCISWN 257
Query: 401 A----YAQQGLCEQTVKVLQLMEPEGIEPNLVML-------------------------- 430
A Y + G C + +++ M ++P+L+ +
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 431 ---------NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481
N LI + G + EA V+ M+ + D V+++ ++ + + K
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA 373
Query: 482 PEIYKQMESSGCTPD 496
E Y ME +PD
Sbjct: 374 LETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-08
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321
VT+N+LI CKAG V +ALELF +M+E+G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA 123
+YN I CK G ++EA+ L +M+ G P+ +Y+ LI+ L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314
++PD+VT+N+LI C+AG V +A+EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 88/439 (20%), Positives = 164/439 (37%), Gaps = 47/439 (10%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148
K GD+ A + +M IS+ ++I G LE +F M +P L
Sbjct: 234 KCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208
++ G LG + + G + L+ +++ G + + + M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268
+K ++ + +I Y NG+ KA+ + + +S D S++ G+L
Sbjct: 350 ETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----------GF 318
+++ E +++ + +V N+LI + K + KALE+F + E+ G
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 319 --------------------YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGA 358
P+ I +S +G K+ ++ G G G
Sbjct: 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418
+ L+D+Y + GR A + + + IL Y G V++ M
Sbjct: 526 LPNALLDLYVRCGRMN-----YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 419 EPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMKAFIRAKK 477
G+ P+ V L+ A +G + L +H M++ I+P+L Y+ ++ RA K
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 478 FHKVPEIYKQMESSGCTPD 496
E Y + TPD
Sbjct: 641 LT---EAYNFINKMPITPD 656
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-08
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
PD+VTY+TL+ + + K + +++ +M+ G P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 463 VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496
VTY+TL+ +A + + E++K+M+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159
P ++Y +LI+ G+ EA +F EM G P + Y+IL+ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318
VT+NSLI +CKAG + +ALELF +M+E+G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 48/208 (23%)
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209
+NILL G++ G + L M + G+ ++ T+ LL +G + + M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 210 SKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269
K I ++ Y ++D G+ G+L
Sbjct: 617 EK-------------------------YSITPNLKH---------YACVVDLLGRAGKLT 642
Query: 270 EALEVFEKMQQESIRPDIVTWNSL-----IRWHCKAGDVAKALELFTQMQEQGFYPDPKI 324
EA KM I PD W +L I H + G++A G+Y
Sbjct: 643 EAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY----- 694
Query: 325 FITIISCLGELGKWDVIKKNFENMKDRG 352
I + + + GKWD + + + M++ G
Sbjct: 695 -ILLCNLYADAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI 287
YN++ID K G + EALE+F++M++ I PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 462 LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP 495
L TY+ L+ A +A + ++M++SG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279
GL D YN++ID + G + EA+E+ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458
V N LI+ + AGK +EAL ++ MK+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY 220
TY L+D + G++++ + NEM+ +G + N + Y
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138
SY+ + C + +A+ L ++++ P+ + +LI AL + +A + EM
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
G P Y+ILL +K +G LL ++ GI N
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
V N LI+ AG+ +EAL ++ MK+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320
+ T+N+L+ KAGD AL + +M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRP 285
YN+++ K G+ AL V E+M+ ++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190
YN L+ G+ KKG + +L M+ GI N TY IL+D
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 254 IYNSIIDTFGKYGELVEALEVFEKMQQESI 283
YNS+I + K G+L EALE+F++M+++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 463 VTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493
VTY++L+ + +A K + E++K+M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS 112
+YN I CK G ++EA+ L +M+ G P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437
+ Y ++G E+ +K+ M+ GI+PN+ ++LI+
Sbjct: 11 DGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217
TY L+D AGR+++ + EM+ +G + +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 84 IQYCCKLGDIDEAMALLAQMQALGFHP 110
+ K GD D A+A+L +M+A G P
Sbjct: 8 LLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 21/170 (12%)
Query: 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM-VCFGFNPKLRF 149
G A+ L +M G +P +++ SL+ A + G + F M + P L+
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 150 YNILLRGFLKKGLLGLGSRL---LMVMEDMGICRNQETYEILLD-----YHVNAGRLDDT 201
Y ++ LLG +L + M I + + LL+ HV G L
Sbjct: 628 YACVV------DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681
Query: 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD 251
+ + S G+ Y + LY D G W + + + +RE GL++D
Sbjct: 682 HIFELDPNSVGY------YILLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.77 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.26 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.17 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.08 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.85 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.82 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.34 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.23 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.89 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.64 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.19 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.93 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.88 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.2 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.79 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.41 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.96 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.43 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.23 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.03 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.53 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 89.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.1 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.38 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.36 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.2 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.98 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.43 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.24 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.84 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.07 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.6 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.55 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.19 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.75 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.39 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.24 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.08 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=544.97 Aligned_cols=436 Identities=19% Similarity=0.293 Sum_probs=400.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------------------------------CCHhhHHHHHHH
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--------------------------------PSSISYASLIEA 121 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~~~li~~ 121 (514)
.++...|..++..|++.|++++|+++|++|.+.|+. ||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345556667777777777777777777777766642 788899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010229 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE--MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHH
Q 010229 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (514)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 010229 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (514)
|+.+|.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----C-------------------CCcchHHHHHHHHHhCCCCCC
Q 010229 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----A-------------------KKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~ 496 (514)
.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999876542 1 123679999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010229 497 RKARQILQSALVV 509 (514)
Q Consensus 497 ~~~~~~l~~a~~~ 509 (514)
..|+..++.+++.
T Consensus 847 ~~T~~~vL~cl~~ 859 (1060)
T PLN03218 847 MEVLSQVLGCLQL 859 (1060)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999966543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=542.27 Aligned_cols=436 Identities=18% Similarity=0.301 Sum_probs=422.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHccC
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS--KGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g 231 (514)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 678999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.+..|+..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----A-------------------GKYKEALS 448 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~ 448 (514)
..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999976432 1 22478999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010229 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++..
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 9999999999999999999998888899999999999999989999999999999999854
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=534.59 Aligned_cols=421 Identities=21% Similarity=0.292 Sum_probs=409.7
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++++.+.+.|+.++..+||.||++|+++|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 588999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.. ++.||..||..++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .||
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCC
Confidence 9986 6999999999999999999999999999999999999999999999999999999999999999986 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~ 470 (514)
..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010229 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+|.+.|++++|.+++++|. +.||..+|..|+.++..
T Consensus 634 ~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Confidence 9999999999999999994 89999999999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=527.83 Aligned_cols=428 Identities=21% Similarity=0.272 Sum_probs=395.8
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..+||.++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.||..+|+
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+||.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
+.+.|.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974 699999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888753 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------------------------------------------------
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGI------------------------------------------------ 423 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------------ 423 (514)
..+|+.+|.+|++.|+.++|.++|++|.. ++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 45666666666666666666666666543 22
Q ss_pred -----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHH
Q 010229 424 -----------------EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486 (514)
Q Consensus 424 -----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (514)
.||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 356667888888999999999999999999999999999999999999999999999999999
Q ss_pred HHH-hCCCCCCHHHHHHHHHHHHHhhh
Q 010229 487 QME-SSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 487 ~m~-~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+|. +.|+.|+..+|..++.++.+.|+
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 999 67999999999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=513.20 Aligned_cols=425 Identities=21% Similarity=0.311 Sum_probs=409.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.++.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
..+.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|.+ +|.++||.||.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974 599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.++..+++.|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~ 470 (514)
..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010229 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+|.+.|++++|.+++++| ++.||..+|+.|+.++...++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998876 589999999999999987653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=487.88 Aligned_cols=424 Identities=18% Similarity=0.266 Sum_probs=406.6
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
+..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999996 58999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++|++|. ++|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999996 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..++++++.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEP-EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999976 599999999999999999999999999998865 57899999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhhh
Q 010229 471 AFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLEQ 512 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~~ 512 (514)
+|...|+++.|..+++++.+ +.|+ ..+|..|++.+.+.|+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999999999975 6674 5789999999888765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-27 Score=250.97 Aligned_cols=423 Identities=13% Similarity=0.059 Sum_probs=328.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 45567777777777777777777777776653 3445566677777777777777777777777654 456667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+.+.|+.++|...++++.+.+. .+...+..++..+...|++++|..+++++.... +.+..+|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 77778888888888877766543 455667777888888888888888888877653 3466778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887664 4466777788888888888888888888887653 33567788888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010229 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.+ +.+...+..+...+...|++++|...++.+..... +..++..+..++.+.|++++|.+.++.+.+.. +.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 44667777788888888889999888888887653 33666778888888899999999888888764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...|...|+.++|.+.|+++.+.. +.+..+++.+...+...|+ .+|+..++++.+.... +..++..+...+.+.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 888888888999999999999988774 5677888889999999999 8899999988775433 566778888899999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010229 476 KKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 476 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
|++++|.++++++.+.+.. +..++..+..++...|+
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 9999999999999986543 78888888888887765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-27 Score=250.60 Aligned_cols=402 Identities=12% Similarity=0.071 Sum_probs=357.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...+..+...+.+.|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHH
Confidence 34567788899999999999999999998875 5578889999999999999999999999998865 566778889999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+.+.|++++|.++++.+.+... .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999987643 577899999999999999999999999998764 3367788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|...++++.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+..+...+.+.|++++|.+.|+++.+
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999864 5568899999999999999999999999998875 44677888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010229 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+... .+..++
T Consensus 732 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 807 (899)
T TIGR02917 732 RA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVL 807 (899)
T ss_pred hC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 64 555778889999999999999999999998875 56788999999999999999999999999998753 578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+...|+ .+|+..++++.+.. +-+..++..+...+...|++++|.+.|+++.+.+.. +..++..+..++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHc
Confidence 999999999999 88999999998763 446677888999999999999999999999997765 889999999999999
Q ss_pred CCcchHHHHHHHHHh
Q 010229 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|.+++++|++
T Consensus 885 g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 885 GRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=187.52 Aligned_cols=303 Identities=12% Similarity=0.114 Sum_probs=145.3
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCh
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~ 233 (514)
+...|++++|.+.|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455556666666666555432 2344555555555555555555555555554321111 12334444444445555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555444431 22344444444444444444444444444443321111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 010229 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 314 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++...+......
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 00122233334444555555555555544432 2233344445555555555555555555555432222223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
++..++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 4455555555556666666655555543 344444455555556666666666666555543 355555555555444
Q ss_pred c---CCCcchHHHHHHHHHhCCCCCCH
Q 010229 474 R---AKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 474 ~---~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
. .|+.+++..++++|.+.++.|++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33555566666666555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=185.04 Aligned_cols=303 Identities=16% Similarity=0.117 Sum_probs=211.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhc
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKK 160 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 160 (514)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567799999999999998874 44566888888899999999999999998887532111 24577788888888
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHH
Q 010229 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a 236 (514)
|+++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 888888888888877533 45677888888888888888888888888776533221 1344555666777777788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010229 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
.+.++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777653 33455666677777777777777777777765432222345666777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---cCCcchHHHHHHHHHHcCCCCCHH
Q 010229 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 317 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345555566667777777777777777776655 3455566666655553 346667777777776655555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-19 Score=194.95 Aligned_cols=399 Identities=14% Similarity=0.082 Sum_probs=267.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHH-----------
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP-KLRFYN----------- 151 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~----------- 151 (514)
...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455678899999999999998864 4478889999999999999999999999988754211 111121
Q ss_pred -HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH---
Q 010229 152 -ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY--- 227 (514)
Q Consensus 152 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--- 227 (514)
.....+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|++.|++..+.... +...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 224567789999999999999998654 45677888899999999999999999999876322 334444444333
Q ss_pred ---------------------------------------HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010229 228 ---------------------------------------RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 228 ---------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
...|++++|++.+++.++.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455555555555555442 22344444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHccCCHH
Q 010229 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK---------IFITIISCLGELGKWD 339 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~ 339 (514)
++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 55555555554431 1122223333333444555555555554433211111110 1122344556667777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|..+++. .+.+...+..+...+.+.|++++|.+.|+++.+..+ .+...+..++..+...|++++|.+.++...
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77766651 244556677888889999999999999999987653 367788888899999999999999999877
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--c---CHHHHHHHHHHHHcCCCcchHHHHHHHHHh-CCC
Q 010229 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--P---DLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGC 493 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 493 (514)
+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++... .|+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 652 335566777888888999999999999998764322 1 224566677888899999999999998864 344
Q ss_pred C
Q 010229 494 T 494 (514)
Q Consensus 494 ~ 494 (514)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 4
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-19 Score=178.72 Aligned_cols=398 Identities=12% Similarity=0.047 Sum_probs=296.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677889999999999999998876 6788889999999999999999999999999875 4567788999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-------------------------- 213 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------------------- 213 (514)
.|++++|...|......+...+.. ...++..+.. ..+........+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999998887765543211211 1111111111 011111111111000
Q ss_pred ---CCCh---hhHHHHHHH---HHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010229 214 ---QLNS---FVYGKVIGL---YRDNGMWKKAVGIVEEIREMG--LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 214 ---~~~~---~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
..+. ..+..+... ....+++++|.+.|+...+.+ .+.....++.+...+...|++++|+..|++..+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 0000 011111111 123468899999999998764 2334567888888999999999999999999875
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 010229 283 IRPD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (514)
Q Consensus 283 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (514)
.|+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.++.. +.+...+.
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 344 5688888899999999999999999998753 3357888889999999999999999999999875 45677788
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-----H-HHHHHHH
Q 010229 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-----V-MLNVLIN 435 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----~-~~~~li~ 435 (514)
.+...+.+.|++++|...|++..... +.+...|+.+...+...|++++|.+.|++..+.....+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999988753 335778889999999999999999999998875311111 1 1222223
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+...|++++|.+++++..+.... +...+..+...+.+.|++++|.+.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344579999999999998876432 4567889999999999999999999999874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=172.46 Aligned_cols=370 Identities=15% Similarity=0.164 Sum_probs=261.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHh-HHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET-YEILL 189 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li 189 (514)
-..+|..+.+.+-..|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|....+.+ |+... .+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 34567777777777788888888888777754 3456677777778888888888888777777643 44332 23344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010229 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
..+...|+.++|...|.+..+... -=...|+.|...+-..|+...|++.|++..+.. +.-...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcch
Confidence 444556777788777777766521 124567777777777888888888888877653 222556777777787788888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 010229 270 EALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
.|...|.+.... .| ..+.+..|...|...|..|-|+..|++..+. .|+ +..|+.+..++-..|+..+|.+.+..
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 888877776654 33 3456666777777888888888888887764 333 56777888888888888888888888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-
Q 010229 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN- 426 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~- 426 (514)
.+... +......+.|...|...|.+++|..+|....+-.. --....+.|...|-++|++++|+..+++..+. .|+
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~f 421 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTF 421 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchH
Confidence 77764 34566677778888888888888888877765421 12345677777888888888888888877763 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
...|+.+...|-..|+.+.|++.+.+.+.. .|. ...++.|...|..+|+..+|++-+++..+ ++||.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 357778888888888888888888877764 333 34677778888888888888888888776 66664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-18 Score=185.80 Aligned_cols=402 Identities=13% Similarity=0.025 Sum_probs=262.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C--------------CCHhhH---------
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGF------------------H--------------PSSISY--------- 115 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~--------- 115 (514)
...+..+...+.+.|++++|++.++++.+... . |+....
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 44677788888899999999999998765320 0 000000
Q ss_pred ------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc-Ch
Q 010229 116 ------------ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR-NQ 182 (514)
Q Consensus 116 ------------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 182 (514)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ..
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 011334567789999999999988764 4577888888999999999999999999888754322 11
Q ss_pred HhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 010229 183 ETYE------------ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (514)
Q Consensus 183 ~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (514)
..|. .....+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+.. +.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 1222 224456788999999999999888743 356677778888999999999999999988764 33
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR--------PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
+...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.|++..+... -+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 4444544444442 23444444444433211000 0011222333444455555555555555554321 133
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHH------------------------------------------
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY------------------------------------------ 360 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------------------------ 360 (514)
..+..+...+.+.|++++|...++++.+.. +.+...+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 344444555555555555555555554432 1122222
Q ss_pred --HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 010229 361 --AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (514)
Q Consensus 361 --~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (514)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+.
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1234445556666666666651 23455567778888999999999999999998864 456788999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
..|++++|.+.++.+.+... .+...+..+..++...|++++|.++++++...
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999998876432 25566778888999999999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-19 Score=181.80 Aligned_cols=415 Identities=10% Similarity=0.016 Sum_probs=316.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
..-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.+++++..+.. +.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456677788999999999999998632 5566679999999999999999999999998864 4557778889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++++|...++++.+..+ .+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..+.|++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999999988643 4555 888999999999999999999999987433 556666778888889999999998
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHh
Q 010229 240 VEEIREMGLSLDR------QIYNSIIDTFG-----KYGEL---VEALEVFEKMQQE-SIRPDIV-TW----NSLIRWHCK 299 (514)
Q Consensus 240 ~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~li~~~~~ 299 (514)
++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 886654 2221 11222232222 22234 7788899888854 1223221 11 111344567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCcch
Q 010229 300 AGDVAKALELFTQMQEQGFY-PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK---IGAIYAILVDIYGQYGRFRD 375 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 375 (514)
.|++++|+..|+++.+.+.. |+. ....+..++...|++++|...++.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987532 332 22335778999999999999999988654221 13456667778899999999
Q ss_pred HHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 010229 376 PEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG 441 (514)
Q Consensus 376 A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (514)
|.++++.+..... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999987532 123 2345567778899999999999999998763 556788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010229 442 KYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
++++|++.+++..+..+. +...+...+..+.+.|++++|.++++++++ ..|+......+-+.+
T Consensus 408 ~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999885422 466777788889999999999999999998 678777666665554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=167.45 Aligned_cols=379 Identities=16% Similarity=0.175 Sum_probs=317.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLR 155 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~ 155 (514)
..+|..+.+.+...|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3578889999999999999999999999874 335788999999999999999999999999875 4665443 44555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~ 234 (514)
..-..|++.+|...|.+..+... -=...|+.|...+-..|+...|+.-|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 55668999999999998887533 23568999999999999999999999999876 343 567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
.|...|.+..... +....++..+...|...|.+|-|+..|++..+. .|+ ...|+.|..++-..|++.+|...|.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999999988753 345778888888999999999999999999876 444 578999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-H
Q 010229 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-G 392 (514)
Q Consensus 314 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 392 (514)
.... .--....+.|...+...|.+++|..+|....+.. +.-...++.|...|-+.|++++|...+++..+- +|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8753 2245678889999999999999999999998764 334667899999999999999999999999864 554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL-VTYSTLMK 470 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 470 (514)
..|+.+...|-..|+.+.|.+.+.+.... .|. ....+.|...|-..|++.+|++-+++..+ ++||. ..|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 57888889999999999999999998875 443 46788999999999999999999999987 45663 34555554
Q ss_pred HH
Q 010229 471 AF 472 (514)
Q Consensus 471 ~~ 472 (514)
++
T Consensus 499 ~l 500 (966)
T KOG4626|consen 499 CL 500 (966)
T ss_pred HH
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-18 Score=173.81 Aligned_cols=331 Identities=10% Similarity=0.006 Sum_probs=202.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
..++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345556667777777777777766653 2334455555566666777777777777776654 34455666666777777
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 010229 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (514)
|++++|...+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 777777777777766432 34556666677777777777777777766554322 22222222 2356667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 010229 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK----ALELFTQMQEQ 316 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 316 (514)
+.+.+....++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 776655322333444445566667777777777777766543 2245556666666777777664 66667766654
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH-HHH
Q 010229 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG-SMF 395 (514)
Q Consensus 317 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 395 (514)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++...+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 2 2245566666666777777777777777766654 3345556666666777777777777777666543 222 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
..+..++...|+.++|.+.|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33445566667777777777766654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-18 Score=172.84 Aligned_cols=299 Identities=11% Similarity=0.023 Sum_probs=182.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+..++......|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL 156 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3334455556677777777777776653 3345566666667777777777777777776643 3445566666777777
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++++|...++.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777666554332 22223222 23566677777777777766553333344444445666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVE----ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+...+..+...+.+.|++++|+..+++..+
T Consensus 235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766653 3455666666777777777664 666777666542 22455666666777777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 010229 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 386 (514)
.. +.+...+..+..++.+.|++++|...++.+.+.+. .+...+..+..++...|+.++|...|++..+.
T Consensus 313 l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 313 TH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 42 22344555566666777777777777776665532 22233333455666677777777777776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-17 Score=163.70 Aligned_cols=377 Identities=11% Similarity=0.002 Sum_probs=274.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|+...|..+...|.+.|++++|++.+++..+.. +.+...|..+..++...|++++|+.-|..+...+-..+.. ...
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHH
Confidence 34667789999999999999999999999999874 4467789999999999999999999887765543111111 111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc---------------------------CCCcC-hHhHHHHHHH---HHhcCCHHHH
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDM---------------------------GICRN-QETYEILLDY---HVNAGRLDDT 201 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~-~~~~~~li~~---~~~~g~~~~A 201 (514)
++..+........+...++.-... ...+. ...+..+... ....+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 111111100011111111100000 00000 0001111111 1224689999
Q ss_pred HHHHHHHHHcC-CCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 202 WLIINEMRSKG-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 202 ~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.+.|++..+.+ ..| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|...|++..
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998765 223 45667888888999999999999999999864 3346788889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHH
Q 010229 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (514)
+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...
T Consensus 393 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~ 469 (615)
T TIGR00990 393 KLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV 469 (615)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence 763 3357888999999999999999999999998853 2356677788889999999999999999998764 556888
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 010229 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVL 433 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 433 (514)
++.+...+...|++++|.+.|++........+.. .++..+..+...|++++|.+++++..+.. +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 9999999999999999999999988764321111 12222233445699999999999988764 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 010229 434 INAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+.+.|++++|++.|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-16 Score=159.07 Aligned_cols=406 Identities=10% Similarity=0.050 Sum_probs=279.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010229 87 CCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 35778888888888888776 3443 233 77777777888888888888877211 122233333355777778888
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 010229 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
.|.++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888887654 34566667777888888888888888888766 4444444444444444566656888888887
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHH------------------------------------------------HHHHH
Q 010229 245 EMGLSLDRQIYNSIIDTFGKYGELVEA------------------------------------------------LEVFE 276 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~~~~~~A------------------------------------------------~~~~~ 276 (514)
+.. +.+...+..++.++.+.|-...| +.-++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 764 33444544444444444433333 33333
Q ss_pred HHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 277 KMQQE-SIRPDI-VTW----NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 277 ~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 33321 111221 111 234556778888999999999998887666677888899999999999999999998866
Q ss_pred cC-----CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 010229 351 RG-----HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 351 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a 411 (514)
.. .+++......|.-+|...+++++|..+++.+.+..+ .|+ ...+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 123444457788888899999999999999887322 122 22344566778888999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
++.++++.... +-|......+...+...|.+.+|.+.++........ +..+....+.++...|++++|..+.+...+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999997764 668888888999999999999999999777665322 566777788888888999999998888877
Q ss_pred CCCCCHHHHHHHH
Q 010229 492 GCTPDRKARQILQ 504 (514)
Q Consensus 492 g~~p~~~~~~~l~ 504 (514)
..|+......|-
T Consensus 513 -~~Pe~~~~~~l~ 524 (822)
T PRK14574 513 -RSPEDIPSQELD 524 (822)
T ss_pred -hCCCchhHHHHH
Confidence 566665444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-16 Score=160.45 Aligned_cols=389 Identities=11% Similarity=0.046 Sum_probs=290.2
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010229 97 MALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+..++. ...+ +.+..-..-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 3222 4455566667778889999999999999998633 456667999999999999999999999998886
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010229 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
.+ .+...+..+...+...|++++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 EP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 43 456778889999999999999999999998873 22455 8888889999999999999999999875 44666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCC
Q 010229 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDI------VTWNSLIRWHC-----KAGDV---AKALELFTQMQEQ-GFYPD 321 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~ 321 (514)
.+..++...+..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987664 2321 11122222221 12234 7788899988854 22333
Q ss_pred HH-HHH----HHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHH
Q 010229 322 PK-IFI----TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP---SGS 393 (514)
Q Consensus 322 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 393 (514)
.. .+. ..+.++...|++++|+..|+.+.+.+.+........+...|...|++++|...|+++....... ...
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 21 111 1134456779999999999999887632122222335778999999999999999987654221 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGI-----------EPN---LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
....+..++...|++++|.++++.+.+... .|+ ...+..+...+...|++++|+++++++....+.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 466677788999999999999999886521 123 234566778899999999999999999876433
Q ss_pred cCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 460 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
+...+..+...+...|++++|++.+++..+ +.||..
T Consensus 392 -n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~ 427 (765)
T PRK10049 392 -NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI 427 (765)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh
Confidence 678899999999999999999999999998 668753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-17 Score=142.63 Aligned_cols=411 Identities=14% Similarity=0.115 Sum_probs=245.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCChHH-HHHHHHHHHHcC-----------
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS--VGRTLE-ADAIFQEMVCFG----------- 142 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~~~~~g----------- 142 (514)
+++=|.|+.. ..+|.+.++.-+|+.|.+.|++.+...-..+++..+- +.++-- -++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3455666554 5679999999999999999988888877777665442 222211 122333333322
Q ss_pred --------CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010229 143 --------FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 143 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
.+.+..++..+|.+.|+.-..+.|.+++++-.+...+.+..+||.+|.+-.-.. ..++..+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 134456677777777777777777777777666656666777777766543222 25666777777777
Q ss_pred CChhhHHHHHHHHHccCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHC----CCC-
Q 010229 215 LNSFVYGKVIGLYRDNGMWKKA----VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQE----SIR- 284 (514)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~----~~~- 284 (514)
||..|+|.++.+..+.|+++.| .+++.+|.+.|++|+..+|..+|..+++.++..+ |..++.++... ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 7777777777777777766543 4556666677777777777777777766665433 34444444321 111
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 010229 285 ---PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (514)
Q Consensus 285 ---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (514)
.|..-|...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....+.....+.....|+.+.-+-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 23344555666666666666666665554421 02222 233455666666666677777777777666556
Q ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHH----
Q 010229 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LC--------E-----QTVKVLQ---- 416 (514)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~~~---- 416 (514)
|+..+...++++..-.++++-.-+++..++..|..-+.....-++..+++.. +. . -|..+++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666777777777777777777777776665444443333444444333 11 0 0111111
Q ss_pred ---HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHH---HHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 417 ---LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG-ISPDLV---TYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 417 ---~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
++... .......+.+.-.+.+.|+.++|.++|..+.+.+ -.|-.. ....+++.-.+.++...|..+++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12222 2334445666677788888888888888875433 223333 33455666677778888888888886
Q ss_pred hCCCC
Q 010229 490 SSGCT 494 (514)
Q Consensus 490 ~~g~~ 494 (514)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-15 Score=153.54 Aligned_cols=405 Identities=13% Similarity=0.066 Sum_probs=269.7
Q ss_pred ccCcchHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 74 EFSGNSYNKS-IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 74 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
.|+....... ...|.+.|++++|++++.++.+.+ +.+..-...+..+|.. .++ +++..+++. .+..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3344433334 889999999999999999999986 4455557777778887 466 777777553 2346788899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHH------------------------------HHHHHhcCCHHH
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEIL------------------------------LDYHVNAGRLDD 200 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l------------------------------i~~~~~~g~~~~ 200 (514)
.+...|.+.|+.++|.++++++...... |...+|.-+ +..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887643211 222222111 223333333333
Q ss_pred HHHHHH-----------------------------HHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc-----
Q 010229 201 TWLIIN-----------------------------EMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----- 246 (514)
Q Consensus 201 A~~~~~-----------------------------~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 246 (514)
+.++.. .|.... +-+......+.-...+.|+.++|.++++.....
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 332211 111110 001111111111222333344444333332220
Q ss_pred ----------------------------------------------------------C-CCC--CHHHHHHHHHHHhcc
Q 010229 247 ----------------------------------------------------------G-LSL--DRQIYNSIIDTFGKY 265 (514)
Q Consensus 247 ----------------------------------------------------------~-~~~--~~~~~~~li~~~~~~ 265 (514)
+ .++ +...|..+...+..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 0 122 45566666666665
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010229 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777788877776654 355444333444456889999999999887653 444455566677788889999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010229 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
+...+.. +.....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9888765 3333334444444455699999999999988764 567788888889999999999999999988874 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
+...++.+..++...|++++|++.+++..+..+. +...+..+..++...|++++|...+++..+ +.|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 6677888888999999999999999998876443 677888999999999999999999999987 55654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=147.50 Aligned_cols=427 Identities=12% Similarity=0.096 Sum_probs=276.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~ 150 (514)
-|++..+.|.+.|.-.|++..+..+...+...... .-..+|-.+.++|...|++++|...|.+..+.. ++ +..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 36778888999999999999999999988765311 123468889999999999999999999888754 44 3445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010229 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
-.+...|.+.|+++.+...|+.+.+..+ -+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 6688999999999999999999987543 45566677777777665 4466666666665543 3367777777777
Q ss_pred HHccCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHH
Q 010229 227 YRDNGMWKKAVGIVEEIR----EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDI------VTWNSL 293 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~~~~~l 293 (514)
+....-+.. +..|..+. ..+-.+.....|.+...+...|+++.|...|...... ...+|. .+-..+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 766555544 66666543 4455678888999999999999999999999887654 122222 222334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 010229 294 IRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGR 372 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 372 (514)
....-..++.+.|.+.|..+.+. -|.- ..|..++......+...+|...+......+ ..++.++..+...+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 55556667888888888888764 2332 233333323333456667777777766543 4455566666666666666
Q ss_pred cchHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 010229 373 FRDPEECIAALKLEG-LQPSGSMFCILANAYAQ------------QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (514)
+..|.+-|+.+...- ..+|..+.-+|...|.+ .+..++|+++|.+..+.. +-|...-|.+.-+++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 666666555554332 12344444444443332 134556666666665543 4455556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhh
Q 010229 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~a~~~~~ 511 (514)
.|++.+|..+|.+.++.... +..+|.-+.++|...|++..|+++|+...+. +-.-+......|.+++...+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 66666666666666654321 3445666666666666666666666665543 33345555566666655544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-14 Score=148.14 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHH
Q 010229 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 301 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
++.++|+..+.+.... .|+......+...+...|++++|...++.+... +++...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455566655555443 344443333444445778888888888776554 233344556666777788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010229 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
++..+.+. .+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|...+++..+..+.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 88776542 22233333334444568888888888888875 567778888888888999999999999988876433
Q ss_pred CHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010229 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
+...+..+..++...|++++|++.+++..+ ..|+ ...+..+..++...|
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 566778888888888999999999888887 4553 445555555555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-14 Score=127.85 Aligned_cols=360 Identities=15% Similarity=0.166 Sum_probs=187.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+..+|..||.++|+--..++|.+++++......+.+..+||.+|.+-.-.. ..++..+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 345566666666666666666666666655555566666666665443221 2555666666666666666666666
Q ss_pred HHHhcCChhh----HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----ChhhHHH
Q 010229 156 GFLKKGLLGL----GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD-TWLIINEMRS----KGFQL----NSFVYGK 222 (514)
Q Consensus 156 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~~----~~~~~~~ 222 (514)
+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.+... +.++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34455556666666666666666666666555432 2233333222 12222 2334455
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010229 223 VIGLYRDNGMWKKAVGIVEEIREMG----LSLD---RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (514)
.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|.-+-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5556666666666666555443211 1111 11233444555555555555566666555544455555555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCC
Q 010229 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGA---IYAILVDIYGQYGR 372 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 372 (514)
+..-.|.++-.-++|.++...|.......-.-++..+++ ....|+.. -+.....-++ ..-
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~----------------~k~hp~tp~r~Ql~~~~ak~a-ad~ 504 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR----------------DKLHPLTPEREQLQVAFAKCA-ADI 504 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------CCCCCCChHHHHHHHHHHHHH-HHH
Confidence 555555555555555555554432222222112211111 11111111 0111110000 000
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010229 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I---EPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~---~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
.+.....-.++... .......+..+-.+.+.|..++|.++|..+.+.+ - .|.......+++.-...+....|..
T Consensus 505 ~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 01111112223333 3345567777778889999999999999985543 2 2333334456666677788999999
Q ss_pred HHHHHHHCCC
Q 010229 449 VYHLMKDIGI 458 (514)
Q Consensus 449 ~~~~m~~~~~ 458 (514)
+++-|...+.
T Consensus 583 ~lQ~a~~~n~ 592 (625)
T KOG4422|consen 583 VLQLASAFNL 592 (625)
T ss_pred HHHHHHHcCc
Confidence 9998876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-14 Score=141.75 Aligned_cols=368 Identities=12% Similarity=0.029 Sum_probs=276.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.+.. +.+...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 78888888999999999999988321 2233334444668888899999999999999875 445677778888999999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 010229 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (514)
+.++|++.++++.... |+...+..++..+...++..+|++.++++.+.... +...+..++.++.+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998753 45555555555555566776799999999887422 56666666666666665544444433
Q ss_pred H------------------------------------------------HHHc-CCCCCH-HH----HHHHHHHHhccCC
Q 010229 242 E------------------------------------------------IREM-GLSLDR-QI----YNSIIDTFGKYGE 267 (514)
Q Consensus 242 ~------------------------------------------------~~~~-~~~~~~-~~----~~~li~~~~~~~~ 267 (514)
+ +... +-.|.. .. .--.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 2 2221 111221 11 1233456778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHH
Q 010229 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-----FYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
+.++++.|+.+...+.+....+-..+..+|...+++++|+.+|+++.... ..++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988765445577789999999999999999999997642 1223444577889999999999999
Q ss_pred HHHHHHHhcCC-----------CCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010229 343 KNFENMKDRGH-----------GKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 343 ~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+++.+.+... .|+ ......++..+...|++.+|++.++++.... +-|......+.+.+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 99999987321 122 2345567788889999999999999998764 45888899999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.+|.+.++...... +-+..+....+.++...|++++|..+.+.+.+.
T Consensus 467 ~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 467 RKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999998777652 445677788889999999999999999988774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-14 Score=139.94 Aligned_cols=402 Identities=13% Similarity=0.081 Sum_probs=300.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
+|-.+.+.|...|++++|...|.+..+.. ++. ..+-.+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 46678899999999999999999988763 443 445667899999999999999999998864 5566777888888
Q ss_pred HHhcC----ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHH
Q 010229 157 FLKKG----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM----RSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~ 228 (514)
|+..+ ..+.|..++.+..+.-+ .|...|..+...+-...-+.. +..|... ...+..+.+...|.+.....
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 87765 45777777777776542 577788888877766554444 6666544 45666688899999999999
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 010229 229 DNGMWKKAVGIVEEIREM---GLSLD------RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV-TWNSLIRWHC 298 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~---~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~ 298 (514)
..|++++|...|...... ...++ ..+-..+...+-..++.+.|.+.|..+... .|.-+ .|.-+.....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHH
Confidence 999999999999988765 11222 223344556666778999999999999876 34433 3433432333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHh--------
Q 010229 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQ-------- 369 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~-------- 369 (514)
..+...+|..++++.... ...++..++.+...+.+...+..|.+-|+.+.+.-. .+|..+.-.|.+.|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 457788999999988764 233555555566678888888888887776665322 2466666666665543
Q ss_pred ----cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010229 370 ----YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (514)
Q Consensus 370 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (514)
.+..++|+++|.++.+..+ .|...-+.+.-.++..|++..|..+|.+..+.. .-+..+|-.+.++|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 2346678889988887653 355666677778889999999999999998874 3355678899999999999999
Q ss_pred HHHHHHHHH-HCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 446 ALSVYHLMK-DIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 446 A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|+++|+... +.....+......|.+++.+.|.+.+|.+.+.....
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999865 445556788899999999999999999998888876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-15 Score=133.10 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=156.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHH
Q 010229 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 377 (514)
..+|++++|.+.|++.....-.-....|+ +.-.+-..|++++|++.|-++... +..+..+...+...|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34678899999998887653222222222 233466788999999888776543 1235667777888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
+++.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--.. ++-|..+...|..-|....-++.|+..|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 998877654 4557888999999999999999888876554443 567888888888889988899999999998754
Q ss_pred CCcCHHHHHHHHHHHH-cCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010229 458 ISPDLVTYSTLMKAFI-RAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 458 ~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
+.|+..-|..++..|. +.|++++|.++++...+. ++.|..++..|++.+-.+|
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 6789999998876654 689999999999988753 7778888998888776554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-12 Score=125.50 Aligned_cols=367 Identities=14% Similarity=0.116 Sum_probs=238.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
.+.+.-.|++++|.+++.+..+.. +.+...|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334444599999999999998875 6678899999999999999999998776665544 56778999999999999999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHccCChHHHHHH
Q 010229 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG----KVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~ 239 (514)
+.|.-.|.+..+..+ ++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .+++.+...++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998765 455555566778899999999999999998875433333333 345567777777889988
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH--------------------------H
Q 010229 240 VEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN--------------------------S 292 (514)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--------------------------~ 292 (514)
++..... +-..+...++.++..|.+...++.|......+......+|..-|. .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8887762 223456678888899999999999998888877633333332221 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010229 293 LIRWHCKAGDVAKALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
+.-++......+....+.....+.. +.-+...|.-+..++.+.|++..|..++..+.......+..+|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1122233333333333333333333 22234455666666666666666666666666655444556666666666666
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCCCHHHHHHHHHHHHHcCC
Q 010229 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP--------EGIEPNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~p~~~~~~~li~~~~~~g~ 442 (514)
|..++|.+.|+.+....+ -+...-..|...+.+.|+.++|.+.+..+.. .+..|+....-.....+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 666666666666665421 1233334455555666666666666666431 1233333334444455555566
Q ss_pred HHHHHHHHHHHH
Q 010229 443 YKEALSVYHLMK 454 (514)
Q Consensus 443 ~~~A~~~~~~m~ 454 (514)
.++=+.+-..|.
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-13 Score=120.72 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=169.6
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010229 262 FGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 341 (514)
....|++++|.+.|++.....-.-....|| +.-.+-..|+.++|++.|-++... +..+..+...+...|....+...|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 345789999999999998752221122232 223467789999999999988753 334677788888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 342 KKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
++++.+.... ++.++.+.+-|.+.|-+.|+-..|.+.+-+--+. ++.+..+...|...|....-+++++.+|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 9999887665 5778999999999999999999998877654433 345777888888889999999999999998765
Q ss_pred CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 422 GIEPNLVMLNVLINAF-GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+.|+..-|..|+..| .+.|+++.|+++++..... ++-|...+..|++.+...|- .++.++-++
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 589999999988655 5689999999999998764 55688899999998888774 344444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-12 Score=122.59 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=199.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
......+.+...|++++|.+++.++++.. +.+...|.+|...|-..|+.+++...+-......+ .|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 33344444445588888888888887765 55667788888888888888887776655554433 45577777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCCHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY----NSIIDTFGKYGELV 269 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~ 269 (514)
+.|.+++|.-+|.+.++.... +...+-.-...|-+.|+...|..-|.++.....+.|..-+ ...++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888887776322 3333334455677778888888888877776432232222 22345556666667
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010229 270 EALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 270 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-+..- .+. + ......
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~~-~-----~~~~~~ 367 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ERR-R-----EEPNAL 367 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hhc-c-----cccccc
Confidence 7777777665521 1224445667777777777777777777766653333333222000 000 0 000000
Q ss_pred H--hcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 010229 349 K--DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (514)
Q Consensus 349 ~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 424 (514)
. ..+..++..++ .++-++.+....+....+...+...++ .-+...|.-+..+|...|.+.+|+.+|..+.....-
T Consensus 368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0 00111222221 112222333333333334444444432 223445555666666666666666666666554323
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010229 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
-+...|-.+..+|...|.+++|.+.|+......+. +...-.+|...+.+.|+.++|.+.++.+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 34455666666666666666666666666553211 3334445555566666666666666664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=125.80 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHH
Q 010229 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNV 432 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ 432 (514)
+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+.. +-|. ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 455566666666666666666666666665432211111 1111112223456677777777766542 2233 45567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778888888888888888854443456777777788888888888888888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=124.43 Aligned_cols=290 Identities=12% Similarity=0.071 Sum_probs=140.0
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHccCChHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAV 237 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~ 237 (514)
.|+++.|++.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777666665543211 1222323333445666777777777666554 33332222 2244555666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010229 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 6666666554 334555556666666666666666666666554332111 1110000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHH
Q 010229 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCI 397 (514)
Q Consensus 318 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+....
T Consensus 230 -----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 230 -----QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 01111111111222233333333333221 1234444455555555555555555555555442 2232111
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC
Confidence 1222233455555665555555442 23344455555666666666666666666554 23555555556666666666
Q ss_pred cchHHHHHHHHH
Q 010229 478 FHKVPEIYKQME 489 (514)
Q Consensus 478 ~~~a~~~~~~m~ 489 (514)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-11 Score=109.87 Aligned_cols=398 Identities=11% Similarity=0.069 Sum_probs=237.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChHhHHHHHHH--
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV----CFGFNPKLRFYNILLRG-- 156 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~-- 156 (514)
|.-+|++..-|+.|..++++..+. ++.+...|.+....=-.+|+.+....+.++-. ..|+..+...|-.=...
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445666667777777777777654 46666777666666566666666666555432 24444444444433333
Q ss_pred -----------------------------------HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010229 157 -----------------------------------FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 157 -----------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
|.+.+.++-|..+|....+.-+ .+...|......--..|..++-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHH
Confidence 4444444555555554444321 2334455444444445555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
..+|++....-. -....|......+...|+...|..++....+.+ +.+...|-+-+........++.|..+|.+....
T Consensus 570 ~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 556665555422 134444445555666677777777777777664 336666777777777777777777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 010229 282 SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (514)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (514)
.|+...|..-+..---.++.++|++++++..+. ++--...|..+.+.+-+.++.+.|...|..-.+. ++..+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 455556655555555567777777777776663 2223455666666667777777777766655544 344556677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C---------------
Q 010229 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----G--------------- 422 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--------------- 422 (514)
.|...-.+.|.+-.|..++++..-+++ -+...|-..|+.-.+.|+.+.|..+..+..+. |
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 777777777777778888877776654 35667777777777788877777766555432 1
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 423 ----------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 423 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..-|....-.+...|....+++.|.+.|.+..+.+.. +-.+|.-+...+.++|.-+.-.+++++...
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 0122223344445555556666666666666654332 344566666666666666666666666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-11 Score=108.91 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=268.5
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC--hHhHH
Q 010229 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYE 186 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 186 (514)
..|.+.+-.....+-+.|....|+..|......- + ..|.+.+....-..+.+.+.. ... +...| ...--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHH
Confidence 4455555555556667788888888888776431 2 334443333322233333222 221 11111 11112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhc
Q 010229 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGK 264 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 264 (514)
.+..++......++++.-.......|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 34455666678888888888888888887776666677777888999999999999998732 1256677766533222
Q ss_pred cCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010229 265 YGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 265 ~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
+.++. -|..++ .+- .. -+.|...+.+-|+-.++.++|...|+...+.+.. ....++.+..-|....+...|..
T Consensus 312 ~skLs~LA~~v~-~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH-Hhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 122222 111 12 3456777888888899999999999999885322 34567777788999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 010229 344 NFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI 423 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 423 (514)
-++.+++.+ +.|-..|-.|.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999876 6788899999999999999999999999988753 3478899999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
..+...+..|...|-+.++.++|.+.|++-.+. |.. |. .....-|..-+.+.+++++|..+...... | .+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~ 540 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETEC 540 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchH
Confidence 446688999999999999999999999887642 322 21 12222355667789999999987777665 3 7777
Q ss_pred HHHHHHHHHHHHhh
Q 010229 498 KARQILQSALVVLE 511 (514)
Q Consensus 498 ~~~~~l~~a~~~~~ 511 (514)
.--+.|++.+.+..
T Consensus 541 eeak~LlReir~~~ 554 (559)
T KOG1155|consen 541 EEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888877643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-12 Score=123.46 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=137.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010229 124 SVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+++..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555555444432 22 12222333444445555555555555443321111122223344455555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCCHHHHHHHHHHHH
Q 010229 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF---GKYGELVEALEVFEKMQ 279 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~A~~~~~~m~ 279 (514)
..++.+.+..+. ++..+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..++..+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555554322 34444455555555555555555555555544321111101001111 11111121222222222
Q ss_pred HCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010229 280 QES---IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI--F-ITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 280 ~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 221 11255556666666666666666666666666532 22221 0 111111223355566666666655542
Q ss_pred CCcH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 354 GKIG--AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 354 ~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+.++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334 45556666667777777777777743333345666666667777777777777777776643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-12 Score=121.72 Aligned_cols=281 Identities=9% Similarity=0.084 Sum_probs=165.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhH--HHHHHHHHhcCCHHHH
Q 010229 125 VGRTLEADAIFQEMVCFGFNPKLRF-YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY--EILLDYHVNAGRLDDT 201 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A 201 (514)
.|+++.|.+......+.. ++... |........+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22233 3333455578999999999999998753 444322 2446788999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhccCCHHHHHHH
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ-------IYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~ 274 (514)
...++++.+.... ++.....+...|.+.|+|++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988633 67888889999999999999999999999886542221 222223323333344444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 010229 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (514)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (514)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .|++... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444332 1224444555555555555555555555555442 2333111 1112222344444444444444332 2
Q ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 010229 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (514)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 434 (514)
.+.. .+..+...|.+.+++++|.+.|+...+. .|+...+..+.
T Consensus 326 ~~~~-----------------------------------l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 326 DTPL-----------------------------------LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred CCHH-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 3333 3444555555555555555555555543 45555555555
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 010229 435 NAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m 453 (514)
.++.+.|+.++|.+++++.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-10 Score=103.89 Aligned_cols=410 Identities=11% Similarity=0.090 Sum_probs=261.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~ 156 (514)
..|-.-...=..++++..|..+|++.+.-. ..+...|...+..=.++.++..|..+++..+..- |-+ ..|---+.+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence 344444444455678888888888888765 4566677777777778888888888888877642 322 234444444
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
=-..|++..|.++|++..+ ..|+...|++.|+.-.+-+.++.|..+|++..-. .|+..+|....+.-.+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 4556788888888887766 4578888888888888888888888888877654 47777777777777777777777
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---------------------------------
Q 010229 237 VGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE--------------------------------- 281 (514)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------------------------- 281 (514)
..+|+..++.-- ..+...+++....=.++..++.|.-+|.-..+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 777776654310 011222333322222333334443333332221
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHHHH
Q 010229 282 ----------SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-------KIFITIISCL---GELGKWDVI 341 (514)
Q Consensus 282 ----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a 341 (514)
.-+-|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|..+=-+| ....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 01224556666666666667777777777777764 44421 1221111111 245677777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 342 KKNFENMKDRGHGKIGAIYAILVDIYG----QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQL 417 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 417 (514)
.+++...++. ++....++.-+--+|+ +..++..|.+++.... |..|-..+|...|..-.+.++++...+++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777763 3444555554444444 4567777777777766 5567777788777777788888888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010229 418 MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 418 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
..+.+ +-|..+|......=...|+.+.|..+|+.+.+... .-....|.+.|+--...|.+++|..+++++.+. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 88775 45777888777777788888888888888775421 112345666666667788888888888888873 344
Q ss_pred HHHHH
Q 010229 497 RKARQ 501 (514)
Q Consensus 497 ~~~~~ 501 (514)
...|-
T Consensus 540 ~kvWi 544 (677)
T KOG1915|consen 540 VKVWI 544 (677)
T ss_pred chHHH
Confidence 43443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=135.96 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=64.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010229 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 337 (514)
+.......++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .+++..+...+..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhH
Confidence 333333444444444444444433211 22233333333 3444444444444443332 1233334444444444445
Q ss_pred HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010229 338 WDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 338 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
++.+..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+..+ .|......++..+...|+.+++.+++.
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555444444443211 123344444455555555555555555555554421 134444555555555555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010229 417 LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
...+.. +.|...+..+..+|...|+.++|+..|++..+.... |+.....+..++...|+.++|.++.++.
T Consensus 205 ~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 205 RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------------
T ss_pred HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 444432 333344555555555555666666555555543221 4555555555555566655555555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=134.80 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+...+.+.|++++|++++++..... .+.|..-|..+.......++++.|++.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34667778888888888886544432 13344455555566667788888888888887765 3355566666666 677
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHH
Q 010229 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877665532 455667777788888888888888888876533 234666777777788888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 319 (514)
+++.++.. +.|....+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887764 3356777778888888888888777777766542 2344566777778888888888888888877642 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010229 320 PDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 320 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 367777777778888888888877766654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-11 Score=112.16 Aligned_cols=387 Identities=13% Similarity=0.069 Sum_probs=245.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (514)
.+.+..+.|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+|++..+--...++.. |+ +-.+.--.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 4566677889999999999999999987 677 7778889999999999999999888888753 44 3355555666
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHH--------HHHH-cC--CCCChhhHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIIN--------EMRS-KG--FQLNSFVYGKVIG 225 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~~~~~~~~~ll~ 225 (514)
+-..|++++|+.-..- ..+..++....-.--+.+++. +-.. .+ +-|+.....+...
T Consensus 193 ~E~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHhhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7777777777542222 112222211111111111111 1111 11 1222222222222
Q ss_pred HHHc----------------------------cCChHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHhcc
Q 010229 226 LYRD----------------------------NGMWKKAVGIVEEIREM---GLSLD---------RQIYNSIIDTFGKY 265 (514)
Q Consensus 226 ~~~~----------------------------~g~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~ 265 (514)
.+.. ...+..|.+.+.+-... ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 2210 00122222222211110 00111 11222222234456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010229 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
|+.-.|..-|+........++. .|--+...|.+..+.++....|.+....+. -++.+|..-.+...-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888776433222 266777788888888888888888877542 25666777777777778888888888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010229 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
++.+... +.+...|-.+.-+..+.+.+++++..|++.+++ ++..+..|+.....+..+++++.|.+.|+...+. .|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 8888775 445666666666667788889999999988876 3345677888888888889999999999887764 33
Q ss_pred C-------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 426 N-------LVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 426 ~-------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+ ...+ -.++..- -.+++..|.+++++..+.+.+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 1111 1222222 238888899999888876544 455788888888889999999999887764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-10 Score=101.82 Aligned_cols=386 Identities=10% Similarity=0.085 Sum_probs=272.5
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..+...|-.-+..=.++..+..|..++++.... -|-+ ..|-..+..=-..|+...|.++|+.-.+. .|+...|.+
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 345667777777778888888888888887764 2332 23444444445668888888888887765 688888888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHcc
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK-GF-QLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~~ 230 (514)
.|+.=.+.+.++.|..++++..- +.|++.+|.-....-.++|....|..+|....+. |- ..+...+.+....-...
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q 257 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ 257 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888775 3478888888888888888888888888776543 10 00112222222222233
Q ss_pred CChHHHHHHHHHHHHc-------------------------------------------CCCCCHHHHHHHHHHHhccCC
Q 010229 231 GMWKKAVGIVEEIREM-------------------------------------------GLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~li~~~~~~~~ 267 (514)
..++.|.-+|+-.++. .-+.|-.+|--.++.-...|+
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence 3444444444433221 113455667777777788899
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-H---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 010229 268 LVEALEVFEKMQQESIRPDI--VTWNSLI----R-W---HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLG---- 333 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~--~~~~~li----~-~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 333 (514)
.+...++|++.... ++|-. ..|.--| + + =....+++.+.++|+...+. ++-...||..+--.|+
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999999875 44422 1222222 1 1 13467899999999999883 4555677776655554
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010229 334 ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVK 413 (514)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 413 (514)
+..++..|.+++...+. ..|...++...|..-.+.+.++.+..++++..+-++ -+..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHH
Confidence 56789999999988764 467888999999999999999999999999998763 466788888877788999999999
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010229 414 VLQLMEPEG-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 414 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
+|....... +......|.+.|+.=...|.++.|..+++++.+.. +...+|.++..--
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe 550 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFE 550 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHh
Confidence 999988752 22234567777777788999999999999998753 3444676665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-10 Score=104.45 Aligned_cols=363 Identities=12% Similarity=0.064 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
+|+.-...|.+.+.++-|..+|....+-- +.+...|......=-..|..++...+|+++...- +-....|-.....+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 34444444444444444444444444321 2233344444433334444444444554444431 223333444444444
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
..|++..|..++....+... .+...|...+..-..+..++.|..+|.+.... .|+...|..-+..-.-.+..++|++
T Consensus 596 ~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 44555555555555444332 23444555555555555555555555544432 3344444444444444445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010229 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
++++.++. ++.-...|-.+...+-+.++++.|.+.|..=.+. ++-.+..|..+...=-+.|.+-+|..+++...-.+.
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 55554443 1222233444444444444444444444332221 112233344444444444455555555555444322
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010229 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
-+...|...|..-.+.|..+.|..++.+.++. ++.+...|..-|.+..+.++-..+.+.+++- .-|+.....+
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllai 823 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAI 823 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHH
Confidence 24444555555555555555555555444443 2334444444444444444433333333221 2344555666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+-....++.|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.+++......
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 677777888999999999998874 445678988999999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-10 Score=102.93 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=163.6
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++..|++...+-.+.+..| ...|..-..+.-+.|+.+.+-.++.+..+..-.++.....+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554322 3344455555556666666666666665543333444445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI-------VTWNSLIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 312 (514)
.+++.+.+ +.+..+......+|.+.|++.+...+..++.+.+.--+. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666554 345555666666666666666666666666665543332 3455555555555555554455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 010229 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (514)
Q Consensus 313 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 392 (514)
.... .+-++..-.+++.-+.++|+.++|.++..+..+.+..+... ..-...+-++.+.-++..+.-.... +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 4432 34455556666666777777777777777776665544411 1112234445444444444433321 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55666666677777777777777765554 5667777777777777777777777666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-11 Score=102.51 Aligned_cols=289 Identities=12% Similarity=0.083 Sum_probs=198.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHH
Q 010229 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A 271 (514)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46677888888888775211 334445677788888888888888888776421111 22344566678888888889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 010229 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
.++|..+.+.+. .-......|+..|-+..+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998888877532 23456677888888888999999888888776544432 2355555666667788888888888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 010229 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 427 (514)
..+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 88765 334455556777888889999999999998888765556677788888999999999998888887763 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---CCcchHHHHHHHHHh
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA---KKFHKVPEIYKQMES 490 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 490 (514)
..-..+...-....-.+.|...+.+-.. -+|+...+..++..-... |...+-..+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444455544445555666655554443 257888888888776543 334555566666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-11 Score=104.52 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=193.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH
Q 010229 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
.|++..|..+..+-.+.+- -....|..-.++.-..|+.+.+-+.+.+..+....++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4677777777776666552 223444455555566677777777777776653345555666666667777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 010229 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR-------QIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 205 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
.+++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666433 5566666677777777777777777777777654443 3566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH
Q 010229 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (514)
...+ .+.++..-..++.-+.+.|+.++|.++..+..+.+..|. ....-.+.+.++...-.+..+.-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 233455556677778888888888888888877766555 122234556667776666666665542 4455
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+.++|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77888888888888888888888876654 678888888888888888888888888776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-11 Score=101.54 Aligned_cols=277 Identities=15% Similarity=0.106 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HhHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL------RFYNIL 153 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~l 153 (514)
|-.=++.+. +.+.++|+++|-+|.+.. +-+..+..++.+.|-+.|..+.|+.+++.+.++ ||. ...-.|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 333344333 478899999999998753 334556677888888999999999999888763 442 233445
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHc
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRD 229 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~ 229 (514)
..-|...|-+|.|+++|..+.+.+. --......|+..|-+..+|++|+++-+++.+.+..+... .|..+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 6667777888888888877776432 234456677777777777877777777777664433221 22333333444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010229 230 NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
..+.+.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556666666666666543 2223333344455566666666666666666553222233445555666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010229 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 310 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
+..+.+....++ ....+-.......-.+.|...+.+-++. .|+...+..+++.-
T Consensus 272 L~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 272 LRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 666555322222 2222222222333344444444333333 34455555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-10 Score=100.34 Aligned_cols=361 Identities=12% Similarity=0.089 Sum_probs=243.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH--HHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY--NIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~l 153 (514)
|+..+-.....+.+.|..+.|+..|......- +-.=..|..|...+ .+.+ ....... |.+.|.... --+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e----~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE----ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----HHHHHHh-cCcccchHHHHHHH
Confidence 44333333444556777888888887776531 22222333333322 2222 2222222 212221111 123
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHccC
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g 231 (514)
..++-.....+++.+-.+...+.|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 4555666688888888888888888555544455555666788999999999999887321 155667666533 322
Q ss_pred ChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010229 232 MWKKAVGIVEE-IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (514)
Q Consensus 232 ~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (514)
+-..+ .+.+ ..+.+ +--+.|+..+.+-|+-.++.++|...|++..+.+. .....|+.|.+-|....+...|++-+
T Consensus 312 ~skLs--~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSKLS--YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHHHH--HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22211 1111 11111 23455777788888889999999999999987643 24567999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC
Q 010229 311 TQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP 390 (514)
Q Consensus 311 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 390 (514)
+...+-. +.|-..|-.+.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|+..|.....-+- .
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 9998853 3477888999999999999999999999998875 67899999999999999999999999999887653 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPE----GIEPN-L-VMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+...+..|...|-+.++.++|...|++..+. |...+ . ..---|..-+.+.+++++|-.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6678999999999999999999988876652 32222 1 122234555667788888776555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-12 Score=117.21 Aligned_cols=281 Identities=13% Similarity=0.065 Sum_probs=180.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CcChHhHHHHHHHHHhcCCHHHHHHH
Q 010229 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
+.++|...|..+...- .....+...+..+|...+++++|.++|+.+.+... ..+...|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3567777777754432 23335566677777777777777777777766431 135566776666543321 1222
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010229 205 I-NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 205 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
+ +++.+. -+-.+.+|-.+.++|.-+++.+.|++.|++.++.+ +....+|+.+.+-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 122222 12356777777777777888888888887777653 226677777777777777788888888777643
Q ss_pred CCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHH
Q 010229 284 RPDIVT---WNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (514)
Q Consensus 284 ~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (514)
|... |.-+...|.+.++++.|+-.|++..+.+. -+.+....+...+.+.|+.|+|+++++++...+.. ++..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 3333 44455667788888888888877776432 24555666667777778888888888887766533 33333
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
-..+..+...+++++|...++++++. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33445556677888888888887764 2224456667777788888888888777777665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-12 Score=118.20 Aligned_cols=282 Identities=12% Similarity=0.093 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 010229 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+..+|+.+|...... +.-.......+.++|...+++++|.++|+.+.+... .-+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777775444 222346666677788888888888888887776421 12455666655443221 12222
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010229 275 FE-KMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 275 ~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
+- .+.+. -+-.+.+|..+.++|.-.++.+.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 21 12221 1225678888888888888888888888887763 44 56777777777777778888888888776653
Q ss_pred CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 010229 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 432 (514)
+.+-.+|-.+.-.|.+.++++.|+-.|++..+-++ .+.+....+...+.+.|+.++|+.+++++.... +-|+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 23344455567778888888888888888876543 245556666677778888888888888877654 334444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 433 LINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+..+...+++++|++.++++++. .| +...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677778888888888888774 33 4556777778888888888888777777663
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=118.22 Aligned_cols=243 Identities=14% Similarity=0.156 Sum_probs=156.9
Q ss_pred CCCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010229 71 SGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
.|..|+.++|.++|..||..|+.+.|- +|..|.-+..+.+...++.++.+....++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 478899999999999999999999998 9999988887888889999999999988888776 5788899
Q ss_pred HHHHHHHHhcCChhh---HHHHHHHHH----HcCCCcChHhH---------------HHHHHHHHhcCCHHHHHHHHHHH
Q 010229 151 NILLRGFLKKGLLGL---GSRLLMVME----DMGICRNQETY---------------EILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 151 ~~li~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m 208 (514)
..|..+|...||+.. ..+.++.+. ..|+. ....| ...+....-.|-++.+++++..+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999755 222222221 11221 11111 11122222333444444444333
Q ss_pred HHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010229 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288 (514)
Q Consensus 209 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 288 (514)
...... . ++...++-+.... ....++........-.++..+|..+++.-.-.|+++.|..++.+|.++|.+-+..
T Consensus 166 Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 166 PVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred Cccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 211100 0 1111233333222 2222333322222114778888888888888888888888888888888777776
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66666655 67777777888888888888888887766665555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-10 Score=101.98 Aligned_cols=289 Identities=12% Similarity=0.049 Sum_probs=226.6
Q ss_pred CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010229 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+. .+....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34566666777778888999999999999988763 335555555566888889888887777788776 3567888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010229 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 337 (514)
+.--|...|+..+|.+.|.+...-... =...|-....+|+-.|..|+|+..+...-+. ++-...-+.-+.--|.+.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 998898899999999999987654211 2357888999999999999999999887653 11122223334455788899
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCHHHH
Q 010229 338 WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE----G--LQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
...|.+.|.+..... +.|+.+.+.+.-...+.+.+.+|..+|+..... + ..-+..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999998775 677888888888888889999999999987621 1 112566788999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010229 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
+..+++..... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+-..++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999988763 66889999999999999999999999998875 67888777777765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-09 Score=95.84 Aligned_cols=389 Identities=12% Similarity=0.087 Sum_probs=217.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010229 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
.+...|++++|+..+..+.+.. .++...+..+...+.-.|.+.+|..+-.... .+.-.-..+.....+.|+-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 3445566666666666655543 3455555555555555566666665544431 222223334444455555555
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHH
Q 010229 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~ 244 (514)
-..+.+.+.+ ....-.+|.......-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5554444443 2223334445445556678899999888765 33444444433 45677888888888888777
Q ss_pred HcCCCCCHHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHHHHCCCCCCHHH
Q 010229 245 EMGLSLDRQIYNSIIDTFGKY--GEL---------------------------------VEALEVFEKMQQESIRPDIVT 289 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~--~~~---------------------------------~~A~~~~~~m~~~~~~p~~~~ 289 (514)
+. ++.+....|.......+. |+. +.|++++-.+.+. -| ..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EA 287 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EA 287 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hh
Confidence 65 344445555443332221 111 1112221111110 11 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 010229 290 WNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC-----LGELGKWDVIKKNFENMKDRGHGKIGA-IYAIL 363 (514)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 363 (514)
--.++-.|.+.+++.+|..+.+++.- ..|-......+..+ .........|.+.|...-+.+..-|.. --.++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 23345567788899999888877642 23333333322222 112223455666666554444333322 12344
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHHcCC
Q 010229 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGK 442 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~ 442 (514)
...+.-..++++.+..++.+...-...|...+ .+..+++..|++.+|.++|-......++ |..+| ..|.++|.+++.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 44555566788888888888776554444444 4678888899999999999887765444 44555 445578889999
Q ss_pred HHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010229 443 YKEALSVYHLMKDIGISPDL-VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
++-|++++-++.. +-+. .....+...|.+.+.+=-|.+.|+.+.. ..|++..|.
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 9999877655432 2222 2344555677788887777777777765 566655554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=112.25 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=82.1
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010229 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.++-.+...|+.||.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34567888999999999999999999999999998 9999988888888999999999999999988876
Q ss_pred CCcChHhHHHHHHHHHhcCCHHH
Q 010229 178 ICRNQETYEILLDYHVNAGRLDD 200 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~ 200 (514)
.|...+|..|..+|...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 3889999999999999999765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-10 Score=114.05 Aligned_cols=268 Identities=9% Similarity=-0.030 Sum_probs=185.6
Q ss_pred CCCHhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 010229 109 HPSSISYASLIEALA-----SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---------KGLLGLGSRLLMVME 174 (514)
Q Consensus 109 ~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 174 (514)
..+...|...+++.. ..+++++|.+.|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455666666655532 2356899999999998864 3345566666655542 244789999999998
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010229 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
+.++ .+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8754 46778888888889999999999999999887532 5667888888999999999999999999987532 3333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI-FITIISCLG 333 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~ 333 (514)
+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+... ...+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556678899999999999876532224555777788888999999999999887653 344333 344445566
Q ss_pred ccCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010229 334 ELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
..| +.+...++.+.+... .+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 477776776655311 1111111 34445566777777666 7776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-10 Score=101.00 Aligned_cols=199 Identities=13% Similarity=0.061 Sum_probs=124.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
....+..+...+.+.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778888888899999999998887653 4456677778888888888888888888887764 345566677777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 234 (514)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777788888888887777653211 12334555555566666666666666665554211 3344445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010229 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 278 (514)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555544 1233344444444455555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-08 Score=95.12 Aligned_cols=389 Identities=17% Similarity=0.174 Sum_probs=262.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010229 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
+...|+-++|....+...... ..+.+.|..+.-.+-...++++|+..|..+...+ +.|...|.-+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 345689999999888877644 4577889988888888899999999999999876 66778888777777788888887
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHccCChHHHHHH
Q 010229 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVI------GLYRDNGMWKKAVGI 239 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll------~~~~~~g~~~~a~~~ 239 (514)
...-....+..+ .....|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|.+.
T Consensus 129 ~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 777766666433 456789999999999999999999999987764 245655554332 345577888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHHCC
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC-KAGDVAKAL-ELFTQMQEQG 317 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~g 317 (514)
+..-... +......-..-.+.+.+.+++++|..++..+..+ .||...|...+..+. +-.+.-+++ .+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 7765543 1112223344566788999999999999999987 477777666555444 344444444 666666543
Q ss_pred CCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH--------c--
Q 010229 318 FYPDPKIFIT-IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKL--------E-- 386 (514)
Q Consensus 318 ~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-- 386 (514)
.|-...... =+.......-.+....++....+.|+++ ++..+...|-.-...+ +++++.. .
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccC
Confidence 111111111 1111112222344455666666777654 3333443333222111 2222211 1
Q ss_pred --------CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 387 --------GLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 387 --------~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.-+|....|+ .++..+-+.|+++.|...++...+. .|+. ..|-.=.+.+...|.+++|..++++.++
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 0145555554 4677888999999999999999876 5654 4566666888999999999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010229 456 IGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
.+. +|...-..-..-..++++.++|.++.....+.|.
T Consensus 434 lD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 654 3555444666777789999999999988888765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-10 Score=99.70 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=125.9
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4556667777778888888888888777653 34456677777777778888888888877776543 345566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542211 23344555556666666666666666666543 2234455566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22344445555555556666666666655554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-08 Score=93.48 Aligned_cols=360 Identities=9% Similarity=0.048 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+....+-|.++|.+++|++.|.+.++. .|| ...|.....+|...|+|++..+.-.+..+.++ .-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHH
Confidence 334556788999999999999999986 577 88899999999999999999988888877432 22446666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH--------HHHHHHHHHH-cC--CCCCHHHHHHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK--------AVGIVEEIRE-MG--LSLDRQIYNSIIDTF 262 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~--------a~~~~~~~~~-~~--~~~~~~~~~~li~~~ 262 (514)
..|++++|+.-.. ..+++..+....-.-. |..-.++-.+ .+ +-|+....++....+
T Consensus 195 ~lg~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 8888888764222 2222222222211111 2222222222 11 123333322222221
Q ss_pred ---------------------------hc-cCCHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHhcCC
Q 010229 263 ---------------------------GK-YGELVEALEVFEKMQQE-SIRP--D---------IVTWNSLIRWHCKAGD 302 (514)
Q Consensus 263 ---------------------------~~-~~~~~~A~~~~~~m~~~-~~~p--~---------~~~~~~li~~~~~~g~ 302 (514)
.. ...+..|...+.+-... ...+ + ..+...-..-+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 00 01233333333221110 0011 1 1111111122345688
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010229 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.-.|..-|+..++....++ ..|..+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988644333 237777778999999999999999999886 55677888888888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 010229 383 LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--- 459 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--- 459 (514)
....+. -+...|-.+.-+..+.+.+++++..|++..+. ++.-+..|+.....+..+++++.|.+.|+..++....
T Consensus 420 ai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 987642 24455655666667888999999999999876 5667889999999999999999999999998864322
Q ss_pred ----cCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 460 ----PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 460 ----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
+.+.+..+++..-.+ +++..|.+++++.++ +.|..
T Consensus 498 ~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkc 536 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPKC 536 (606)
T ss_pred ccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCchH
Confidence 112222333333333 889999999999987 56644
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-13 Score=84.43 Aligned_cols=50 Identities=34% Similarity=0.562 Sum_probs=42.0
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 124 (514)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-08 Score=94.87 Aligned_cols=275 Identities=13% Similarity=0.061 Sum_probs=177.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+-|...+++.+..++.+...+.. ++....+..-|..+.+.|+..+-..+=.++.+. .+....+|-++.--|...|+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 33444555666666666555542 344444444455556666555555555555544 2234566666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
+|.+.|.+....... =...|..+...++-.+..|+|...+..+.+.-.. ...-+-.+.--|.+.++++-|.+.|.+..
T Consensus 330 eARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777777766542111 1234556666666677777777666665543111 11112223334666777777888887776
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010229 385 LEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE--GIEP----NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (514)
Q Consensus 385 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (514)
... +.|+..++-+.-.....+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+++++|+..+++......
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 542 235666666666666678899999999877621 1111 234678999999999999999999999988754
Q ss_pred CcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010229 459 SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
+ |..++.++.-.|...|+++.|.+.|.+..- +.||..+...++...
T Consensus 487 k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 487 K-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred C-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 4 899999999999999999999999999886 899886555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=109.03 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=182.7
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHV---------NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+++++|.+.|++..+..+ .+...|..+..++. ..+++++|...+++..+.... +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 346789999999988643 24556666655443 234589999999999987533 6778888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 456778888999999999999999999999886432 22233344555777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC-CCC
Q 010229 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQP 390 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 390 (514)
++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. ..+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 98765322245556777788889999999999998876553 334556667777777777 47888777765531 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 010229 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG 422 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 422 (514)
....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22223 33445566777766666 7777653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-07 Score=89.95 Aligned_cols=407 Identities=14% Similarity=0.213 Sum_probs=256.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL-GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
..|-.-+..+.++|++......|+..+.. .+.-....|...+...-..+-++-+..+|++-++. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 46777788888999999999999987654 22233557888888888899999999999998863 33446677888
Q ss_pred HHhcCChhhHHHHHHHHHHcC------CCcChHhHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCC--hhhHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMG------ICRNQETYEILLDYHVNAGRLDDT---WLIINEMRSKGFQLN--SFVYGKVIG 225 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~~~--~~~~~~ll~ 225 (514)
+++.+++++|.+.+....... .+.+-..|..+-+..+++.+.-.. ..+++.+... -+| ...|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 889999999999988876431 234556777777777666544332 2334444332 233 356888999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------C------CHHHHHHHHHHHHHCC-
Q 010229 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----------------G------ELVEALEVFEKMQQES- 282 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~------~~~~A~~~~~~m~~~~- 282 (514)
-|.+.|.+++|..+|++.+..- ..+.-|..+.++|+.- + +++-.+.-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999988752 3344444444444321 1 2333444455544331
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 283 ----------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD------PKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 283 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
-+.++..|..-+.. ..|+..+-...|.+.... +.|. ...+..+...|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 01234444443332 346677777888887763 3332 3567788888999999999999999
Q ss_pred HHHhcCCCCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhcC
Q 010229 347 NMKDRGHGKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------------SGSMFCILANAYAQQG 406 (514)
Q Consensus 347 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g 406 (514)
+..+...+.- ..+|..-.++-.+..+++.|.++.+......-.| +...|...++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654332 4456666666777888888888888765322111 2345555666666667
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHc---CCCcchHH
Q 010229 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL-VTYSTLMKAFIR---AKKFHKVP 482 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~ 482 (514)
-++....+++.+.+..+. +....-.....+-.+.-++++.+++++-+..=.-|++ ..|+..+..+.+ .-..+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 777777888877765432 2222222222334445566666666654443223333 255555554432 22456677
Q ss_pred HHHHHHHhCCCCCCH
Q 010229 483 EIYKQMESSGCTPDR 497 (514)
Q Consensus 483 ~~~~~m~~~g~~p~~ 497 (514)
.+|++..+ |++|+.
T Consensus 571 dLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHHHh-cCCHHH
Confidence 77777776 555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=98.39 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF-ITII 329 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll 329 (514)
|..--+.+...|.+.|.+.+|.+.|+.-... .|-+.||..|-..|.+..++..|+.++.+-.+. .|-.+|| .-..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3444467889999999999999999988776 466778889999999999999999999998874 4545554 4566
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010229 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
..+...++.+++.++++...+.. +.++....++...|.-.++.+-|...++++...|+. ++..|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888999999999999999875 567777888888899999999999999999999974 7788998888999999999
Q ss_pred HHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 410 QTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
-++.-|++....--.|+ ...|..+.......|++.-|.+.|+.....+.. +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999988876543444 357888888889999999999999998876543 677899998888999999999999998
Q ss_pred HHhCCCCCCH
Q 010229 488 MESSGCTPDR 497 (514)
Q Consensus 488 m~~~g~~p~~ 497 (514)
..+ +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 876 55654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.5e-08 Score=83.76 Aligned_cols=370 Identities=10% Similarity=0.031 Sum_probs=226.0
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
...++...|-.|...+.-.|.+.+|..+-.+..+ ++-.-..+...-.+.++-++-..+.+.+.. ...---
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqL 155 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQL 155 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHH
Confidence 3456667777777777778999999887766442 334444556666678887777777666643 223334
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL-DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD- 229 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~- 229 (514)
+|.+.....-.+.+|++++++....+ |+-...|..+ -+|.+..-++-+.++++-..+. ++-++...|.......+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhh
Confidence 45555555567899999999998754 4444555444 4567788888888888887765 22234444444332222
Q ss_pred -cCChHHHH--H----------HHHHHHHcCC------------CCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 230 -NGMWKKAV--G----------IVEEIREMGL------------SLD-----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 230 -~g~~~~a~--~----------~~~~~~~~~~------------~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.|+..+.. + ..+.+.+.++ -|. +..--.|+--|.+.+++.+|..+..++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 12221111 1 1112222211 011 1122234455789999999999987764
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 280 QESIRPDIVTWNSLIRWHCKAGD-------VAKALELFTQMQEQGFYPDPK-IFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
-. .| .-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. --.++.+++.-..++++....+..+...
T Consensus 313 Pt--tP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 313 PT--TP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred CC--Ch--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22 222222222333333 455666665544444333321 1234455555666788888888887765
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-
Q 010229 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC-ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM- 429 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~- 429 (514)
-...|...+ .+.++++..|.+.+|+++|-.+....++ |..+|. .|.++|.+++.++.|+.++-++... .+..+
T Consensus 389 F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsL 463 (557)
T KOG3785|consen 389 FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSL 463 (557)
T ss_pred hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHH
Confidence 444444444 5788999999999999999988766554 444554 5667889999999999888776532 23333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 010229 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 465 (514)
...+..-|.+++.+--|.+.|+.+...+ |++..|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 3445568889999999999999888754 555545
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-07 Score=85.45 Aligned_cols=411 Identities=14% Similarity=0.151 Sum_probs=196.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChHhHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG------FNPKLRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~ 151 (514)
..|...+...-..|-++-++.++++..+. ++..-+--|..+++.+++++|.+.+...+... -+.+...|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 35777777777778888888888888753 45556777888888888888888777665321 123344455
Q ss_pred HHHHHHHhcCChhhH---HHHHHHHHHcCCCcC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010229 152 ILLRGFLKKGLLGLG---SRLLMVMEDMGICRN--QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 152 ~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
-+-+..++.-+.-.. ..+++.+... -+| -..|++|.+.|.+.|.+++|.++|++....-. ...-|..+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHH
Confidence 444444443332221 1222222211 122 23566666666666666666666666544311 12222222222
Q ss_pred HH------------------------------------------------------------------ccCChHHHHHHH
Q 010229 227 YR------------------------------------------------------------------DNGMWKKAVGIV 240 (514)
Q Consensus 227 ~~------------------------------------------------------------------~~g~~~~a~~~~ 240 (514)
|. ..|+..+-...+
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 21 112233333333
Q ss_pred HHHHHcCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 241 EEIREMGLSL------DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD---IVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 241 ~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
.++.+. +.| -...|..+.+.|-..|+++.|..+|++..+-..+-- ..+|......=.+..+++.|+++++
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333322 111 122455556666666666666666666554321100 1233333333344555666666655
Q ss_pred HHHHCCC----------CC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcc
Q 010229 312 QMQEQGF----------YP-------DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 312 ~m~~~g~----------~p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
......- .| +...+...++.--..|-++....+++.+++..+.....+.| ....+....-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 5432100 00 12233333444444556666666666666554332222222 111223344455
Q ss_pred hHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc---CCHHHHHHHHHHhhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHH
Q 010229 375 DPEECIAALKLEGLQPSG-SMFCILANAYAQQ---GLCEQTVKVLQLMEPEGIEPNLVMLNVLI--NAFGVAGKYKEALS 448 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~ 448 (514)
++.+++++-...-..|+. ..|+..+.-+.+. ..++.|..+|++..+ |.+|...-+--|+ ..=-+.|....|..
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566655554333222332 2444444433321 256777777777766 4444332211111 11223466666777
Q ss_pred HHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 010229 449 VYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (514)
Q Consensus 449 ~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 502 (514)
+++++... +++. ...|+..|.-....=-+.....+|++.++ .-||......
T Consensus 608 iyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~m 660 (835)
T KOG2047|consen 608 IYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREM 660 (835)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHH
Confidence 77665432 3322 23455555444333334455566666665 3555544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=80.72 Aligned_cols=49 Identities=41% Similarity=0.728 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-10 Score=97.60 Aligned_cols=229 Identities=11% Similarity=0.029 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc
Q 010229 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (514)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (514)
+.+.+.|.+.|.+.+|.+-++..++. .|-+.||-.|-..|.+..+...|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34445555555555555555554443 344445555555555555555555555544432 112222223344444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010229 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 275 (514)
++.++|.++|+...+.. +.++....++...|.-.++++.|+..|+++++.|+ .+...|+.+.-.|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555554432 11334444444444455555555555555555553 24444444444444455555555555
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 276 EKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 276 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
++....-..|+ ...|..+-......|++..|.+.|+-....+ .-....++.+.-.-.+.|+.+.|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 55443322222 1234444444445555555555555544432 11334444444444555555555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-07 Score=87.53 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH--HHHHHH-
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI--LLRGFL- 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~- 158 (514)
+=++.+...|++++|++..+++...+ +.+...+..=+-++.+.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 45677788999999999999999876 56677788888889999999999965544221 112222 234444
Q ss_pred -hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010229 159 -KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 159 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 68999999998883332 234466667778889999999999999986653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-08 Score=96.31 Aligned_cols=290 Identities=14% Similarity=0.127 Sum_probs=137.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHc---
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYRD--- 229 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~--- 229 (514)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34456677777777777664432 22233444556666777777777777777777663 33333 3333333311
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010229 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 230 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (514)
..+.+...++++++...- |.......+.-.+..-..+. .+...+..+..+|+++ +++.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 124555566666665542 22222222222222211222 2334445555555532 344444444433333333
Q ss_pred HHHHHHHHHC----CC----------CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010229 307 LELFTQMQEQ----GF----------YPDP--KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 307 ~~~~~~m~~~----g~----------~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
.+++...... +. .|.. .++..+...|...|++++|..+++..++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 3444443321 10 1122 122333444555555555555555555543 22244555555555555
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--------HHHHHHHHHHHcCC
Q 010229 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--------MLNVLINAFGVAGK 442 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--------~~~~li~~~~~~g~ 442 (514)
|++.+|.+.++.....+. -|..+-+..+..+.+.|+.++|.+++....+.+..|-.. .......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555442 244444444455555555555555555554443222111 11233344555555
Q ss_pred HHHHHHHHHHH
Q 010229 443 YKEALSVYHLM 453 (514)
Q Consensus 443 ~~~A~~~~~~m 453 (514)
+..|++.|...
T Consensus 321 ~~~ALk~~~~v 331 (517)
T PF12569_consen 321 YGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-09 Score=99.88 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CC
Q 010229 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREM-----GL-SLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IR 284 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~ 284 (514)
.+...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455666777777777777777665543 10 1222 22333555666666666666666665532 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHH
Q 010229 285 PD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQ-----GFY-PDP-KIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 285 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
|. ..+++.|...|.+.|++++|..+++...+- |.. |.. ..++.+...|...+++++|..++...
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 234555556666677766666666554421 111 111 12333444455555555555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-08 Score=97.21 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=147.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCChhh-HHHHHHHHHccCChHHHHHHHHHHHHc-----C--
Q 010229 182 QETYEILLDYHVNAGRLDDTWLIINEMRSK-----GF-QLNSFV-YGKVIGLYRDNGMWKKAVGIVEEIREM-----G-- 247 (514)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 247 (514)
..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666899999999999999999987654 21 223322 334667888999999999999988753 2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---C
Q 010229 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-----SI-RPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQ---G 317 (514)
Q Consensus 248 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g 317 (514)
.+.-..+++.|..+|.+.|++++|...+++..+- +. .|.+. .++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223567888888999999999999888876532 21 22332 3556677788899999999998866532 1
Q ss_pred CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 010229 318 FYPD----PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 318 ~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
+.++ ..++..+...|...|++++|.++++.++...... ......-...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~----------------------------~~~~~~~~~~ 410 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL----------------------------LGKKDYGVGK 410 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------------------------ccCcChhhhH
Confidence 1111 2345555556666666666666655554321000 0000001122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEP----EGI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
.++.+...|.+.+.+++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444444444444444444443221 111 122 3466677777777777777777766553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-08 Score=93.64 Aligned_cols=296 Identities=15% Similarity=0.131 Sum_probs=212.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++ .|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 3344456778999999999999876543 334456677888999999999999999999999875 44445555555552
Q ss_pred hc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010229 194 NA-----GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW-KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 194 ~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
.. .+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 35677888999887763 4444443333223222223 3455566677777754 356777777776666
Q ss_pred HHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 010229 268 LVEALEVFEKMQQE----S----------IRPDIVTW--NSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIIS 330 (514)
Q Consensus 268 ~~~A~~~~~~m~~~----~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 330 (514)
.+-..+++...... + -+|....| .-+.+.|...|++++|++++++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 13444334 55677788999999999999999986 454 677888888
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH------HH--HHHHHHH
Q 010229 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MF--CILANAY 402 (514)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~ 402 (514)
.+-+.|++.+|.+.++.....+ ..|...-+-.+..+.++|++++|.+++..+.+.+..|... .| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 4577777888889999999999999999998776544321 22 3345678
Q ss_pred HhcCCHHHHHHHHHHhh
Q 010229 403 AQQGLCEQTVKVLQLME 419 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~ 419 (514)
.+.|++..|++.|....
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 88999999999888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-07 Score=86.65 Aligned_cols=399 Identities=14% Similarity=0.125 Sum_probs=262.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..++..| ..+++...+++.+.+.+. .+-...|.....-.+...|+-++|..........+ ..+.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 455566665 568999999999998874 33445555555556678899999999988887754 466788999888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
...++++|++.|......+. -|...|.-+.-.-.+.|+++.......++.+.. +.....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988654 566777777777778888888888777777652 2245678888888889999999999
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 239 IVEEIREMG-LSLDRQIYNSIID------TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~li~------~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++..+.. -.|+...+..... ...+.|..++|++.+...... +.-....-.+-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999988764 2466665554333 345778888888887766543 11122223345566889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 010229 312 QMQEQGFYPDPKIFITIIS-CLGELGKWDVIK-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ 389 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 389 (514)
.+... .||..-|...+. ++.+..+.-++. .+|....+.- +.....-..=+.......-.+....++....+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99985 567666655554 443333333333 5555554431 111111111111111122233344566667777765
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCC----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 390 PSGSMFCILANAYAQQGLCEQTVKV----LQLMEPEG----------IEPNLV--MLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
+ ++..+.+.|-.....+-..++ ...+...| -+|... ++..++..|-+.|+++.|...++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 455555544332222211111 11111111 144443 4456777888999999999999998
Q ss_pred HHCCCCcCHH-HHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 454 KDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 454 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+. .|+.+ .|..=.+.+.+.|+.++|...+++..+.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 874 45543 4556668899999999999999999874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-06 Score=78.86 Aligned_cols=307 Identities=12% Similarity=0.064 Sum_probs=202.4
Q ss_pred cChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010229 180 RNQETYEILLDYHVN--AGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 180 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
|+..+...-+.+++. .++...|...+-.+.... ++-|......+...+...|+.++|+..|++....+ +.+.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 333333333444433 445455555554444333 34466677788888889999999999998877653 11222222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010229 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
...-.+.+.|+.+....+...+.... .-....|-.-.......++++.|+.+-++.++... -+...|..-...+...+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 23334567788888777777766531 11333454445555667788888888888776421 13344444445677888
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHH
Q 010229 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA-NAYAQQ-GLCEQTVKV 414 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~-g~~~~a~~~ 414 (514)
+.++|.-.|+...... +.+...|..|+..|...|.+.+|...-+...+. +..+..+.+.+. ..|... .--++|.++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 8999988888887764 456788999999999999999888777765543 223444444442 223222 234678888
Q ss_pred HHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010229 415 LQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 415 ~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
++..... .|+- ...+.+...+...|+.++++.+++.... ..||....+.|.+.+...+.+++|.+.|....+ +
T Consensus 427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 8877664 5553 3556777788888999999999988765 457888889999999999999999998888876 5
Q ss_pred CCCH
Q 010229 494 TPDR 497 (514)
Q Consensus 494 ~p~~ 497 (514)
.|..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 6654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9e-08 Score=87.57 Aligned_cols=219 Identities=14% Similarity=0.044 Sum_probs=152.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010229 90 LGDIDEAMALLAQMQALG-FHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356777888888877643 1222 3457788888899999999999999998875 55678999999999999999999
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 010229 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
.+.|++..+..+ .+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...+++....
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999988543 346778888888899999999999999988763 33322222233345677899999999776543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010229 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SI--R-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
. .++...+ .+...+ .|+...+ +.+..+.+. .+ . .....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVEFY--LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHHHHH--ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 233322 3444333 234443321 11 1 123568888888899999999999999888753
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-07 Score=81.45 Aligned_cols=327 Identities=14% Similarity=0.093 Sum_probs=216.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH-HHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-LLRGFL 158 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 158 (514)
+.+.+..+.+..++.+|++++..-.++. +.+....+.+...|-...++..|-+.|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4567778889999999999999888874 337778888888999999999999999998764 355444432 235566
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILL--DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+.+.+..|+++...|... ++...-..-+ ......+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999999888753 2221111111 22345788888888888776433 444555555556789999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-------------CCHH---------------
Q 010229 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-------------PDIV--------------- 288 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------p~~~--------------- 288 (514)
.+-|+...+-+--.....||..+. ..+.++++.|++...++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999999887654445667776554 44678999999999999887653 1221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.- ..+++....+-+.-++..+ +....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 122223345678889999888888752 22445777765543322 2334555555556666654 35577888888999
Q ss_pred HhcCCcchHHHHHHHHHHcCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 010229 368 GQYGRFRDPEECIAALKLEGL-QPSGSMFCILANAYA-QQGLCEQTVKVLQLME 419 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~ 419 (514)
|+..-++-|-+++.+-..... -.+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999988888866322111 11223333 334433 3346677766665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-06 Score=84.63 Aligned_cols=380 Identities=12% Similarity=0.079 Sum_probs=239.7
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH-h
Q 010229 106 LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-T 184 (514)
Q Consensus 106 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 184 (514)
..+.-|...|..+.-++...|+++.+.+.|++....- --....|..+...|...|.-..|..+++.-......|+.. .
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455577888888888888899998888888876532 3445678888888888888888888887766544334333 3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCC
Q 010229 185 YEILLDYHV-NAGRLDDTWLIINEMRSK--GF--QLNSFVYGKVIGLYRDN-----------GMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 185 ~~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~ 248 (514)
+-..-..|. +-+..+++++.-.+.... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 345666666666555541 11 11233344333333321 224567777777776653
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-------
Q 010229 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ-GFYP------- 320 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p------- 320 (514)
. |..+...+.--|+..++++.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |..-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2 333333334457777889999999888887755568888988888888889999999888876542 2100
Q ss_pred -------C----HHHHHHHHHHHHc---------c--------------CCHHHHHHHHHHH----H----hcC----CC
Q 010229 321 -------D----PKIFITIISCLGE---------L--------------GKWDVIKKNFENM----K----DRG----HG 354 (514)
Q Consensus 321 -------~----~~~~~~ll~~~~~---------~--------------~~~~~a~~~~~~~----~----~~~----~~ 354 (514)
| ..|...++...-. . ++..++......+ . ..+ .+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0 1122222221110 0 0111111111110 0 001 00
Q ss_pred -------Cc------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 355 -------KI------GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 355 -------~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
++ ...|....+.+.+.+..++|...+.+..... .-....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 11 2245556667777788888877777766543 234555666666677788889999988888765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 422 GIEPNLVMLNVLINAFGVAGKYKEALS--VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+ +-++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|....+
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 3 3345678889999999998877777 88888887655 788899999999999999999999988876
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-06 Score=81.43 Aligned_cols=220 Identities=14% Similarity=0.074 Sum_probs=112.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 010229 223 VIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS-------LIR 295 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~ 295 (514)
+.++..+..+++.+++.+....+.. .+..-++....+|...|++.++...-+...+.|.. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 4444445555555555555555543 34444555555566666655555555544443321 1111222 222
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcch
Q 010229 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRD 375 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 375 (514)
+|.+.++++.++..|.+.......|+.. .+....+++.+..+...-.+... ..-...-...+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHH
Confidence 3444455566666665544432222211 11122222222222222111111 1111122445667778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
|...|.+++..+ +-|...|+...-+|.+.|.+..|++-.+...+.. ++....|.-=..++....+++.|.+.|++..+
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877765 3466777777777778888777777766666552 22333444444455556677777777777776
Q ss_pred CC
Q 010229 456 IG 457 (514)
Q Consensus 456 ~~ 457 (514)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 43
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-07 Score=80.22 Aligned_cols=269 Identities=10% Similarity=0.000 Sum_probs=119.8
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010229 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
+.|+.....+...+...|+.++|...|++....++ -+........-.+.+.|++++...+...+.... .-....|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 34455555555555555666666555555544221 011111111222334555555555544444321 0011112222
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (514)
........+++.|+.+-++.++.+ +.+...+-.=...+...++.++|.-.|+...... +-+..+|.-|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 223334445555555555555442 2233333333344445555555555555544321 12445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHH
Q 010229 304 AKALELFTQMQEQGFYPDPKIFITII-SCLG-ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (514)
.+|.-.-+..... +..+..+.+.+. ..|. ....-++|.++++..++.. +.-....+.+...+...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 5555444443321 222333333221 1111 1222345555555554443 2223344445555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 382 ALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
..... .||....+.|.+.+...+.+++|++.|.....
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 54432 34555555555555555555555555555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-07 Score=77.36 Aligned_cols=191 Identities=13% Similarity=-0.015 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
...|.-+|.+.|++..|..-+++.++.. +-+..+|..+...|-+.|..+.|.+-|++..+.. +.+-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455666666666666666666553 2334455555566666666666666666665543 3344455555555555
Q ss_pred cCChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
.|++++|...|++.....--+ -..+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 555555555555555432111 1234445555555555555555555555444211 23333444444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010229 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
.++.....+. ++..+.-..|..--..|+.+.+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444444332 3444433344444444444444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-07 Score=86.40 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010229 126 GRTLEADAIFQEMVCFG-FNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
+..+.++.-+.+++... ..|+ ...|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777776766432 1121 34566677777788888888888888777654 45677888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010229 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
..|++..+.... +..++..+..++...|++++|.+.++...+.+ |+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888887765322 45666667777777788888888888777653 222111122222344567777877776544321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010229 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG---F--YP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
.|+. |.. .......|+...+ +.+..+.+.- . .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 221 1222334554443 2444443210 0 00 12345556666666666666666666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-07 Score=77.02 Aligned_cols=208 Identities=14% Similarity=0.041 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+...+.-.|...|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|++..+..+ .+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34566778999999999999999999976 55677899999999999999999999999998654 56788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 272 (514)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998764322 46788888889999999999999999999875 334566777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010229 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
..++.....+. ++..+.-..|..--..|+.+.+-++=.++... .|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988765 78888888888888999999998887777763 455554443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-06 Score=80.69 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEPEGIE--------PNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
...++...|+.+.|..+++.+...... ..+...-....++...|+.++|.+.+.+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666665442111 011111222233445666666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-06 Score=80.60 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCC---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 362 ILVDIYGQYGRFRDPEECIAALKLEGLQ---P-----SGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
....++...|+.++|..+++.+...... - .........-++...|+.++|.+.+.....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666777777777666542211 0 011112222345577888888888877664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-05 Score=76.19 Aligned_cols=417 Identities=12% Similarity=0.089 Sum_probs=269.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH----------------------HHhcCChHHHHHH----HHHHHHcC
Q 010229 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEA----------------------LASVGRTLEADAI----FQEMVCFG 142 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~----------------------~~~~g~~~~A~~~----~~~~~~~g 142 (514)
+.+...+++.-+.....++.+.+..++..+-.. ++-..+.+++.-. +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 345666777766666665554444444333222 2222333444322 22233334
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHH
Q 010229 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYG 221 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~ 221 (514)
+..|...|..+.-+...+|++..+.+.|++....-+ .....|+.+...|...|....|..+++.-......|+ ...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 567889999999999999999999999998875433 4567899999999999999999999988766543343 34444
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCC-CC
Q 010229 222 KVIGLYR-DNGMWKKAVGIVEEIREM--GL--SLDRQIYNSIIDTFGKY-----------GELVEALEVFEKMQQES-IR 284 (514)
Q Consensus 222 ~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~-~~ 284 (514)
..-..|. +.+..++++.+-.++++. +. ......|-.+.-+|... ....++++.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 457788888877777652 11 12233444444444321 12456778888887764 33
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCC---------
Q 010229 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR-GHG--------- 354 (514)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 354 (514)
|++..| +.--|+-.++.+.|++..++..+.+-.-+...+..+.-.+...+++.+|+.+.+...+. +..
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 444444 33346778899999999999998766668888888888888999999999998877643 210
Q ss_pred ---------CcHHHHHHHHHHHHh-----------------------cCCcchHHHHHHHHH--------HcC-------
Q 010229 355 ---------KIGAIYAILVDIYGQ-----------------------YGRFRDPEECIAALK--------LEG------- 387 (514)
Q Consensus 355 ---------~~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~~~--------~~~------- 387 (514)
....++..++..+-. .++..+|......+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001222222222220 011112222211110 001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 388 --L--QPS------GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 388 --~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
+ .|+ ...|......+.+.+..++|...+.+..... +-....|......+...|...+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 111 2345556667778888888888777776542 4456677777788889999999999999888754
Q ss_pred CCcCHHHHHHHHHHHHcCCCcchHHH--HHHHHHhCCCCC-CHHHHHHHHHHHHHhhh
Q 010229 458 ISPDLVTYSTLMKAFIRAKKFHKVPE--IYKQMESSGCTP-DRKARQILQSALVVLEQ 512 (514)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p-~~~~~~~l~~a~~~~~~ 512 (514)
+. ++.+..++..++.+.|+..-|.. ++..+.+ +.| +...|..|...+...|+
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccc
Confidence 33 56788999999999998887777 8888888 555 56788888877776664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-06 Score=89.67 Aligned_cols=335 Identities=11% Similarity=-0.003 Sum_probs=209.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCh--hhHHHHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF------QLNS--FVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~ll~~~~ 228 (514)
....|+++.+...++.+.......+..........+...|++++|...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344567776666666553211112222233445556678999999998887754311 1111 11222334566
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHh
Q 010229 229 DNGMWKKAVGIVEEIREMGLSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RPDIVTWNSLIRWHCK 299 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~ 299 (514)
..|++++|...+++........+ ....+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999998876321222 134456666778899999999999887642 11 1112344556667888
Q ss_pred cCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHH
Q 010229 300 AGDVAKALELFTQMQEQ----GFY--P-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVDIYG 368 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~ 368 (514)
.|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886542 221 1 1233444555677789999999988877543 21112344555667788
Q ss_pred hcCCcchHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGLQP-SGSMF-----CILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGV 439 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 439 (514)
..|+.++|.+.+.......... ....+ ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421111 11111 11224445678999999998776543211111 124566778889
Q ss_pred cCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 440 AGKYKEALSVYHLMKDI----GISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987542 33322 235667778888999999999999998864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-06 Score=90.84 Aligned_cols=337 Identities=11% Similarity=0.008 Sum_probs=211.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC------CcC--hHhHHHHHHHH
Q 010229 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI------CRN--QETYEILLDYH 192 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~ 192 (514)
.+...|+++.+..+++.+.......+..........+...|++++|...++...+.-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777666552211112222334445556678999999999887754311 011 11222333456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHh
Q 010229 193 VNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREMGL---S--LDRQIYNSIIDTFG 263 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~ 263 (514)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.....- . ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999988764211121 2345556677889999999999998764311 1 11234566677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010229 264 KYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD--PKIFITIISCL 332 (514)
Q Consensus 264 ~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 332 (514)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 2233445566677789999999999887642 11122 23344455677
Q ss_pred HccCCHHHHHHHHHHHHhcC--CCCcHH--H--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 010229 333 GELGKWDVIKKNFENMKDRG--HGKIGA--I--YAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYA 403 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~ 403 (514)
...|+.+.|...++...... ...... . ....+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78999999999988875421 111111 0 11122445567899999998877543221111 111345667788
Q ss_pred hcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 404 QQGLCEQTVKVLQLMEPE----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
..|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999887653 32222 2456677788999999999999999987643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-06 Score=75.53 Aligned_cols=290 Identities=13% Similarity=0.113 Sum_probs=203.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHH-HHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI-LLDYH 192 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~ 192 (514)
-+++.+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-+.++++...- |....|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 46677778888999999999999888764 4477888999999999999999999999998743 45444433 24566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010229 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI----GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
.+.+.+.+|+++...|... ....+..+ ......+++..+..+.++....| +..+.+...-...+.|++
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 7789999999999888653 22222222 22345788888888888776433 455556666667899999
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH--------HHH
Q 010229 269 VEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-------------DPK--------IFI 326 (514)
Q Consensus 269 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~--------~~~ 326 (514)
++|.+-|+...+- |.. ....|+..+ +..+.|+++.|+++..++.++|++. |.. .-+
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999998775 454 455777555 4567899999999999999877532 211 122
Q ss_pred HHHHH-------HHccCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010229 327 TIISC-------LGELGKWDVIKKNFENMKDR-GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 327 ~ll~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.++.+ +.+.++++.|.+.+..|.-+ ....|+++...+.-. -..+++.+..+-+.-+...++- ...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 33333 44778888888888887643 334556655444322 1245566666666666655543 45688888
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 010229 399 ANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~ 418 (514)
+-.||+..-++-|-.++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88999999888888887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-05 Score=71.97 Aligned_cols=410 Identities=10% Similarity=0.125 Sum_probs=244.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
-|..+|+.||+-+..+ .++++.+.++++... ++-....|..-|..-...++++....+|.+.+.. ..+...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 3678999999987665 999999999999864 3456778999999999999999999999998875 35566777766
Q ss_pred HHHHh-cCChhh----HHHHHHHHH-HcCCCc-ChHhHHHHHHHH---------HhcCCHHHHHHHHHHHHHcCCCCChh
Q 010229 155 RGFLK-KGLLGL----GSRLLMVME-DMGICR-NQETYEILLDYH---------VNAGRLDDTWLIINEMRSKGFQLNSF 218 (514)
Q Consensus 155 ~~~~~-~g~~~~----A~~~~~~~~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~~ 218 (514)
+---+ .|+... ..+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54433 333332 233444433 334333 233466665543 33445666777777776532211011
Q ss_pred h------HHHHHHH-------HHccCChHHHHHHHHHHHH--cCCCCC---------------HHHHHHHHHHHhccCC-
Q 010229 219 V------YGKVIGL-------YRDNGMWKKAVGIVEEIRE--MGLSLD---------------RQIYNSIIDTFGKYGE- 267 (514)
Q Consensus 219 ~------~~~ll~~-------~~~~g~~~~a~~~~~~~~~--~~~~~~---------------~~~~~~li~~~~~~~~- 267 (514)
. |..=|+. --+...+..|.++++++.. .|+... ...|-.+|..=-..+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1 1111111 1123456677777777653 232211 1224444443221111
Q ss_pred -----H--HHHHHHHHH-HHHCCCCCCHHH-HHHH----HHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010229 268 -----L--VEALEVFEK-MQQESIRPDIVT-WNSL----IRWHCKAGD-------VAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 268 -----~--~~A~~~~~~-m~~~~~~p~~~~-~~~l----i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
. ....-++++ +.--+..|++-- +... -+.+...|+ -+++..+++...+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011111222 111223333211 0111 112333343 3455555655544322223333433
Q ss_pred HHHHHH---ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 010229 328 IISCLG---ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYA 403 (514)
Q Consensus 328 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 403 (514)
+.+.-- +-.+.+.....+++++......-..+|..+++..-+..-+..|..+|.+..+.+..+ +..+.++++.-|+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 332211 111355556666666654433345567788888888888999999999998887777 6677777777665
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchH
Q 010229 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKV 481 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 481 (514)
.++.+-|.++|+.-.+. +.-+..--...+.-+...++-..|..+|++....++.|| ...|..++.-=..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46888999999876654 233444446777788888999999999999988766665 46899999988999999999
Q ss_pred HHHHHHHHh
Q 010229 482 PEIYKQMES 490 (514)
Q Consensus 482 ~~~~~~m~~ 490 (514)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 888888765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=85.05 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=95.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654444 222211112233334445555566554322 2222222 34444443333333322333444
Q ss_pred HHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 272 LEVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
+.-+++.......++..++. .....+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43333332222111111221 1122334455555555554321 2344444455555555555555555555554
Q ss_pred cCCCCcHHHHHHHHHHHH----hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010229 351 RGHGKIGAIYAILVDIYG----QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 351 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
.+ .| .+...+..++. -.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-+
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 32 11 11222222221 122344555555554332 23344444444444445555555555544444332 223
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 010229 427 LVMLNVLINAFGVAGKY-KEALSVYHLMK 454 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 454 (514)
..+...++.+....|+. +.+.+.+.++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 33444444444444444 33444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-06 Score=76.40 Aligned_cols=393 Identities=13% Similarity=0.088 Sum_probs=216.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCC
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGL 162 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 162 (514)
-++.+..|+++.|+.+|-+..... ++|.+.|..-..+|++.|++++|++=-.+-++. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999988876 668899999999999999999998877777665 344 4578888888888999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCChhhHHHHHHHHHcc------
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSK---GFQLNSFVYGKVIGLYRDN------ 230 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~~~~~~~~~ll~~~~~~------ 230 (514)
+++|+..|.+-.+... .|...++-+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999998887543 45667777777762111000000 011111000 0000111222222221110
Q ss_pred -CChHHHHHHHHHHHHc--------C-------CCC----------------------CHHHHHHHHHHHhccCCHHHHH
Q 010229 231 -GMWKKAVGIVEEIREM--------G-------LSL----------------------DRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 231 -g~~~~a~~~~~~~~~~--------~-------~~~----------------------~~~~~~~li~~~~~~~~~~~A~ 272 (514)
.......+....+... + ..| -..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0001111111111000 0 000 0011233444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHccCCHHHHHHHH
Q 010229 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI-------TIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~ 345 (514)
+.+....+.. -+..-++....+|...|.+.+....-....+.|.. ...-|+ .+..++.+.++++.+...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 5555555432 13333334444455555555554444444433321 111111 1222334444555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 010229 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 424 (514)
.+.+.....|+. ..+....+++....+...-. .|... -...-...+.+.|++..|++.+.++++.. +
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 554432212111 11112222222222222111 11110 01111445678899999999999999885 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
-|...|....-+|.+.|.+..|+.-.+...+.... ....|.-=..++....++++|.+.|++..+ ..|+..
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~ 460 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNA 460 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhH
Confidence 67889999999999999999999988888775221 233454445566667789999999998887 456554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.3e-05 Score=71.09 Aligned_cols=372 Identities=13% Similarity=0.098 Sum_probs=199.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH----HHHH
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL----LDYH 192 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~ 192 (514)
+=++-+...|++++|.+...++...+ +.+...+..-+-+..+.+++++|+.+.+.-.. ..+++.. ..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34556678899999999999999876 66677778878888999999999965544321 1122222 3344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 010229 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 271 (514)
.+.+..++|+..++-.... |..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+- .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AA 158 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hh
Confidence 5789999999998833221 34466666778999999999999999998765321 111111111110 01
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHc
Q 010229 272 LEVFEKMQQESIRPDIVTWNSL---IRWHCKAGDVAKALELFTQMQEQ-------GFYPDP-------KIFITIISCLGE 334 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~ll~~~~~ 334 (514)
... ..+......| ..+|..+ ...+...|++.+|+++++...+. +-.-+. ..-..+.-.+..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0111111112 1233222 22344566666666666665211 100000 011122333445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhc-----------------------------------------
Q 010229 335 LGKWDVIKKNFENMKDRGHGKI---GAIYAILVDIYGQY----------------------------------------- 370 (514)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~----------------------------------------- 370 (514)
.|+-.+|..++...++...... ...-|.|+.+-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665542211 11112222111000
Q ss_pred ----CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010229 371 ----GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ--GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYK 444 (514)
Q Consensus 371 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (514)
+..+.+.++...+. +..|. ..+..++..+.+. ..+..+.+++...-+....-...+.-.++......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 11222 2344444433222 246667777776665422222345556667778899999
Q ss_pred HHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhhhc
Q 010229 445 EALSVYH--------LMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 445 ~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
.|++++. .+.+.+..|- +..++...+.+.++.+.|..++.+.... .-.+.......+..-.+.++.|
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 5555444443 4556666777777777787777777642 2334445555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-07 Score=84.64 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=150.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
..-+.+.|++.+|.-.|+...+.. +-+...|..|....+.+++-..|+..+++..+.. +.+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345578888888888888887764 4567788888888888888888888888888865 45667777888888888888
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHccC
Q 010229 164 GLGSRLLMVMEDMGICRNQETYEILL-----------DYHVNAGRLDDTWLIINEMR-SKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g 231 (514)
..|.+.++......++ |..+. ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888887654321 00000 11111222334445555543 3343466777777777777778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELF 310 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 310 (514)
++++|+..|+.++... +-|...||.|...++...+.++|+..|++.++. .|+ +..+..|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 8888888888777654 446777888888887777788888888777764 444 234445666677778888777776
Q ss_pred HHHH
Q 010229 311 TQMQ 314 (514)
Q Consensus 311 ~~m~ 314 (514)
-..+
T Consensus 522 L~AL 525 (579)
T KOG1125|consen 522 LEAL 525 (579)
T ss_pred HHHH
Confidence 6544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-07 Score=82.19 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=127.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 010229 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK 305 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 305 (514)
-+.-.|.+..++.-.+ ......+.+......+.+++.-.|+.+.++ .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222211222334444556666666655433 3333322 4555555444433333234444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010229 306 ALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 306 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
++.-+++.......+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433322222 2222222233455667777776665432 245555666777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010229 385 LEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 385 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+..
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 53 223 233334443322 22567777777776554 4566677777777777777777777777776654433
Q ss_pred CHHHHHHHHHHHHcCCCc-chHHHHHHHHHh
Q 010229 461 DLVTYSTLMKAFIRAKKF-HKVPEIYKQMES 490 (514)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 490 (514)
|+.++..++.+....|+. +.+.+++.++.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555666666666666666 445666666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.6e-06 Score=79.51 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=131.3
Q ss_pred CcchHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CC
Q 010229 76 SGNSYNKSIQ--YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-G--------FN 144 (514)
Q Consensus 76 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g--------~~ 144 (514)
|..+-..+++ .|.-.|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445455554 4556688888877777665 4457888888888887777776666555321 1 01
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
++ .+-.-..-.....|.+++|..+|.+.+. |..|=+.|...|.+++|+++-+.-.+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 2222222333456777777777777665 33344556667777777776554322221 23444444
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
.-+...++.+.|++.|++.-.. -..++..|. .+......+.+++. |...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 4455566677776666653211 001111110 01111111122221 3333444444444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
.|+.+|..... |-+++...|-.|+.++|-++-++- .|....-.|.+.|...|++.+|...|-+.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66665555432 333444445555555555443321 13444445556666666666666555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-06 Score=80.31 Aligned_cols=167 Identities=18% Similarity=0.295 Sum_probs=84.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010229 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+......+.+|+.+++.+.++.. ...-|..+...|+..|+++.|.++|-+.- .+.-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334455566666666666665422 22235555666677777777776665431 1334556667777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
.|.++-++.. +.......|-+-..-+-+.|++.+|++++-.+. .|+. .|..|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7666554442 223334445444455555666666666554432 2222 2445555555555555544432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
... -..|-..+..-+-..|+...|...|-
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 111 11223333444444455555444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-06 Score=81.40 Aligned_cols=189 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
....+.+|+.+++.+.... .-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|++++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3344445555554444331 122334444455555555555555554321 23344555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010229 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
+-++.. |.......|..-..-+-+.|++.+|.++|-... .|+ ..|.+|-+.|..+..+++.++-...
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh--
Confidence 544332 122233344444444455555555555543322 122 1344555555555555444432211
Q ss_pred CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010229 354 GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
.-..+...+..-|...|++..|++-|-+.. -|.+.+..|...+.+++|.++-+
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 112233344445555666666655554432 14445555655666666655543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-06 Score=74.89 Aligned_cols=215 Identities=8% Similarity=0.002 Sum_probs=148.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+++.+-..+...++.++|+.+.+++.+.. +-+..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45556666777889999999999998874 334556777767777777 5789999999988765 45666777666666
Q ss_pred HhcCCh--hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CC
Q 010229 158 LKKGLL--GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GM 232 (514)
Q Consensus 158 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~ 232 (514)
.+.|+. +++...++++.+... .|..+|+.....+...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 667888888887655 67788888888888889999999999999887654 566666655554443 22
Q ss_pred ----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010229 233 ----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 233 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
.+..++...+++... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 245666666666554 45667777777777662 33455777776655532 2245556666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-05 Score=73.76 Aligned_cols=361 Identities=16% Similarity=0.173 Sum_probs=205.2
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-------C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-G-------F-HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFN 144 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 144 (514)
-.+-..|..|.+.|.+..+++-|.-.+..|... | . .++ .+-..+...-...|.+++|..+|.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 346678999999999999999887776665431 1 0 121 2222233344578999999999999876
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH----------HcCC-
Q 010229 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR----------SKGF- 213 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g~- 213 (514)
|..|-..|-..|.+++|.++-+.=... .=..||......+-..++.+.|++.|++.. ...+
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 445556677789999999887654332 224577777777888889999998887532 1110
Q ss_pred --------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 010229 214 --------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285 (514)
Q Consensus 214 --------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 285 (514)
..|...|.-....+...|+.+.|+.+|....+ |-+++...|-.|+.++|-++-++-.
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------ 965 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------ 965 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------
Confidence 11223333333334445555555555554443 4455666666777777776655432
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------------CCHHHHHHHHHHHHh
Q 010229 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL---------------GKWDVIKKNFENMKD 350 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------------~~~~~a~~~~~~~~~ 350 (514)
|......+...|-..|++.+|...|.+.+. |...|+.|-.. .+.-.|-++|++.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-- 1034 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-- 1034 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--
Confidence 555566677778788888888877776543 22222222111 1222223333322
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH--------HHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 351 RGHGKIGAIYAILVDIYGQYGRFRDPEECIAA--------LKLE--GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 351 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
|. -....+..|-+.|.+.+|+++--+ ++.. +...|+...+--.+-++...++++|..++-..++
T Consensus 1035 -g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1035 -GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred -ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 10 112233455666666666554321 1111 2233455555555556666666666666665543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCH----HHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDL----VTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
|..-+.. |+..+..-..++-+.|. ..+-.|+. .....+...|.+.|.+..|-+-|.+.-
T Consensus 1109 ---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1109 ---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred ---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 2222222 23333333333334442 12122333 356777888999999999887776653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=58.38 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-05 Score=66.80 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHH
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASL---IEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLRGF 157 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~ 157 (514)
-+.+.+...|++.+|+.-|....+. |+..|.++ ...|...|+-..|+.-+.+.++. +||-..- ..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4667788889999999999998865 34444444 45788889999999989888875 5764322 2234567
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcCh--Hh------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQ--ET------------YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
.+.|.++.|..-|+...+.....+. .. ....+..+...|+...|+.....+++..+ -|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHH
Confidence 8999999999999999876432111 11 12234445567788888888887776532 266666666
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH----HHH------
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTW----NSL------ 293 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~l------ 293 (514)
..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++..+. .||.... ..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 777888888888877777666543 335555666667777778888887777776654 3443221 111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010229 294 ---IRWHCKAGDVAKALELFTQMQEQGFYPDP---KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 294 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
+......++|-++++..+...+....... ..+..+-.++...+++.+|++.-.++++.. +.|+.++.--..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHH
Confidence 01122334444444444444432211111 112223334444455555555555554432 23344454455555
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 010229 368 GQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~ 386 (514)
.-...++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 5555555555555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-09 Score=58.85 Aligned_cols=32 Identities=41% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010229 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQM 103 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (514)
|..||.++||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677777777777777777777777777776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00011 Score=64.74 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=63.5
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010229 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 221 (514)
.++.-.--+...+...|++..|+.-|....+ -|+..|.++ ...|...|+...|+.-+.+.++. +||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3445555667777777888888888877776 344445444 34677778877887777777765 55533221
Q ss_pred -HHHHHHHccCChHHHHHHHHHHHHcC
Q 010229 222 -KVIGLYRDNGMWKKAVGIVEEIREMG 247 (514)
Q Consensus 222 -~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (514)
.-...+.+.|.++.|..-|+..++..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 12245667788888888888877764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-05 Score=82.70 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREM-GLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS 292 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 292 (514)
...|...+......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.- -....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 444555555555666666666666655532 110 112345555555555555556666666665531 11234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcC
Q 010229 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG-KIGAIYAILVDIYGQYG 371 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 371 (514)
|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++.+.|..++.++++.-.. .......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 566666666666666666666553 2334555666666666666666666666655543211 12334444445555555
Q ss_pred CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010229 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
+.+.+..+|+......+ -....|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1615 DaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555554322 123345555555555555555555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-06 Score=78.64 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010229 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
+|-...-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+..+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 4444455667788899999999999998875 577889999999999999999998887 47899999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010229 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+. .-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 98887777788888887765432 111222223346899999999988766542 3456788888888899999
Q ss_pred HHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 409 EQTVKVLQLMEPEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+.|.+.|...... .| +...||.+-.+|.+.|+-.+|...+++..+.+.. +...|...+......|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999988765 45 4678999999999999999999999999987743 666777778888899999999999999
Q ss_pred HHh
Q 010229 488 MES 490 (514)
Q Consensus 488 m~~ 490 (514)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00012 Score=73.57 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 331 (514)
..+|..+..+-.+.|.+.+|.+-|-+.. |+..|..++....+.|.+++-.+++...++..-.|... +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 3456666666666666666666553332 55566666666666677766666666555544444332 345666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010229 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
|++.++..+.++++ ..|+......+.+-+...+.++.|.-+|..+ ..|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66666655544432 1233444444444444555555444444332 1244444444444444444
Q ss_pred HH
Q 010229 412 VK 413 (514)
Q Consensus 412 ~~ 413 (514)
..
T Consensus 1240 VD 1241 (1666)
T KOG0985|consen 1240 VD 1241 (1666)
T ss_pred HH
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-06 Score=78.17 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010229 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
|......|.-.|.-.|++++|+..|+..+... +-|..+|+.|...++...+.++|+..|.++++..... +.+...|.-
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgI 506 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGI 506 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhh
Confidence 33344444444444555555555555544421 1133444555555555555555555555554443221 222222333
Q ss_pred HHHhcCCcchHHHHHHH
Q 010229 366 IYGQYGRFRDPEECIAA 382 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~ 382 (514)
.|...|.+++|...|-.
T Consensus 507 S~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhHHHHHHHHHH
Confidence 34445555555544443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-05 Score=81.89 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=114.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCF-GFN---PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE 186 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (514)
+...|...|......++.++|+++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3455666666666666677777766666542 111 112345555555555566666666666666531 1233556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 010229 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKY 265 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 265 (514)
.|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.+.++.-... -.......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 6666666666666666666666554 22345556666666666666666666666665541110 122233334444556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010229 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 320 (514)
|+.+.+..+|+...... +.-...|+..|..-.++|+.+.+..+|++....++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666655432 2234456666666666666666666666666655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-05 Score=70.02 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhhHHH
Q 010229 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~ 168 (514)
.+++.+|...|+.+.. ..++.++|+.+..++++.. +.+..+|+....++.+.| ++++++.
T Consensus 33 ~~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 33 TPEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred CHHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHH
Confidence 3567777777776654 3467789999999988764 445567777767777777 5799999
Q ss_pred HHHHHHHcCCCcChHhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 010229 169 LLMVMEDMGICRNQETYEILLDYHVNAGRL--DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
.++++.+... .+..+|+.....+.+.|+. ++++.+++++.+...+ +..+|+....++...|+++++++.++++++.
T Consensus 94 ~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 94 FAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999888655 4556787776666666653 6778888888877543 6777887778888888899999999998887
Q ss_pred CCCCCHHHHHHHHHHHhcc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010229 247 GLSLDRQIYNSIIDTFGKY---GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDVAKALELFTQMQE 315 (514)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~---~~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 315 (514)
+ +.+...|+.....+.+. |. .+++++...++.... +-|...|+-+...+... +...+|.+.+.+...
T Consensus 172 d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 6 34666777666555443 22 245666665655542 23566777777666652 334557777766655
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 010229 316 QGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~ 334 (514)
.+ ..+......+++.|+.
T Consensus 250 ~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cc-CCcHHHHHHHHHHHHh
Confidence 33 2245566666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-06 Score=70.77 Aligned_cols=118 Identities=7% Similarity=0.072 Sum_probs=71.2
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 010229 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGK--YKEA 446 (514)
Q Consensus 370 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A 446 (514)
.++.+++...++.....+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555555443 2455666666666666667777766666666653 33555566666543 45555 3667
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776665443 555666666666677777777777777665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00024 Score=71.44 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRW 296 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 296 (514)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+.-..++...|.+. +.+|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555554443221 244455556666666666666665555554444444433 245555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010229 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
|++.++..+..+++ .-|+......+.+-|...+.++.|.-+|..+ .-|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66655554443332 1345555555555555555555555444332 1234444444455555554
Q ss_pred HHHHH
Q 010229 377 EECIA 381 (514)
Q Consensus 377 ~~~~~ 381 (514)
.+.-+
T Consensus 1240 VD~aR 1244 (1666)
T KOG0985|consen 1240 VDAAR 1244 (1666)
T ss_pred HHHhh
Confidence 44433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.9e-05 Score=74.33 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 010229 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
+...|+..|-+..+.. +.=...|..|...|+...+...|.+.|+...+.+ ..|...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 1113456667777776667777777777776654 4456666777777777777777776633
Q ss_pred HHHHcCC-CcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 010229 172 VMEDMGI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (514)
Q Consensus 172 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (514)
...+... ..-...|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+....+ +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 3322211 011223444444566667777777777766655333 56666777777777777777777777666543 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+...-.-..-+.+..|.+.+|+..+....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222222233455667777776666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00014 Score=72.90 Aligned_cols=395 Identities=12% Similarity=0.013 Sum_probs=228.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLR 155 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~ 155 (514)
..|..|...|+...+...|.+.|++.-+.+ ..+...+..+...|++..+++.|..+.-..-+.. +. -..-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 468889999998889999999999998875 4577889999999999999999999843332221 11 1122333455
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHccCCh
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMW 233 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~ 233 (514)
.|.+.++...|..-|+......+ .|...|..+..+|...|++..|+++|.+.... .|+. +|.. ..-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 67788899999999999988665 67889999999999999999999999988765 3332 2222 22345678999
Q ss_pred HHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHH-------HHHCCCCCCHHHHHHHHHHHHhc
Q 010229 234 KKAVGIVEEIREMG------LSLDRQIYNSIIDTFGKYGELVEALEVFEK-------MQQESIRPDIVTWNSLIRWHCKA 300 (514)
Q Consensus 234 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~-------m~~~~~~p~~~~~~~li~~~~~~ 300 (514)
.++...++..+... ...-..++-.+...+.-.|-...|..++++ .......-+...|..+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99999988876531 001112222222222222322233333332 22221122333333333222110
Q ss_pred CChH--H----HHH-HHHHHHHCCCCC--------------------CHHHHHHHHHHHHc----c---C-CHHHHHHHH
Q 010229 301 GDVA--K----ALE-LFTQMQEQGFYP--------------------DPKIFITIISCLGE----L---G-KWDVIKKNF 345 (514)
Q Consensus 301 g~~~--~----A~~-~~~~m~~~g~~p--------------------~~~~~~~ll~~~~~----~---~-~~~~a~~~~ 345 (514)
-..+ . ... ++.+....+.-| +..++..+...|.+ . + +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 0 000 111111111111 12222222222221 1 1 122445555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010229 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
...++.. ..+...|+.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..+++.|...|...+... +.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 5554432 2345556655544 55566666666665544332 2345567777777777888888888888877653 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCcCHHHHHHHHHHHHcCCCcchHH
Q 010229 426 NLVMLNVLINAFGVAGKYKEALSVYHLMK----DIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (514)
|...|-.....-...|+.-++..+|..-- ..|--|+...|..........|+.++-+
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 66677666666667788888888877621 2344456655655555556666655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00055 Score=64.33 Aligned_cols=389 Identities=12% Similarity=0.175 Sum_probs=231.5
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010229 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+-|..+|..||+-+... ..+++++.++++... ++-....|..-|..-.+..+++..+.+|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 67899999999988766 899999999999864 35567889999999999999999999999987653 467778877
Q ss_pred HHHHHhc-CCHHH----HHHHHHHH-HHcCCCCC-hhhHHHHHHH---------HHccCChHHHHHHHHHHHHcCCCCCH
Q 010229 189 LDYHVNA-GRLDD----TWLIINEM-RSKGFQLN-SFVYGKVIGL---------YRDNGMWKKAVGIVEEIREMGLSLDR 252 (514)
Q Consensus 189 i~~~~~~-g~~~~----A~~~~~~m-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 252 (514)
+..--+. ++... ..+.|+-. .+.|+.+- ...|+..+.. +....+++...++|++++...+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7754432 22222 22333333 33444332 2334444432 23344566677778877754322111
Q ss_pred HHHHH------HHHHH-------hccCCHHHHHHHHHHHHH--CCCCCCH---------------HHHHHHHHHHHhcCC
Q 010229 253 QIYNS------IIDTF-------GKYGELVEALEVFEKMQQ--ESIRPDI---------------VTWNSLIRWHCKAGD 302 (514)
Q Consensus 253 ~~~~~------li~~~-------~~~~~~~~A~~~~~~m~~--~~~~p~~---------------~~~~~li~~~~~~g~ 302 (514)
..|+- =|+.. -+...+..|.++++++.. +|...+. ..|-.+|.- -+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 22221 11111 123356677777777653 2321111 114333332 11111
Q ss_pred h---------HHHHHHHHHHH-HCCCCCCHHH-HHHHH----HHHHccCC-------HHHHHHHHHHHHhcCCCCcHHHH
Q 010229 303 V---------AKALELFTQMQ-EQGFYPDPKI-FITII----SCLGELGK-------WDVIKKNFENMKDRGHGKIGAIY 360 (514)
Q Consensus 303 ~---------~~A~~~~~~m~-~~g~~p~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 360 (514)
. ....-.+++.. -.+..|+... +...+ +.+...|+ -+++..+++.....-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222221 2233333211 11111 12333343 34555666665544333344444
Q ss_pred HHHHHHHHhcC---CcchHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHH
Q 010229 361 AILVDIYGQYG---RFRDPEECIAALKLEG-LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-NLVMLNVLIN 435 (514)
Q Consensus 361 ~~li~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~ 435 (514)
..+.+.--..- ..+.....++++.... ..|+ .+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44443322222 2455666666665543 2333 467788888888888999999999999987777 7778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 010229 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR--KARQILQS 505 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~ 505 (514)
-|| .++..-|.++|+.=.+. ...++..-...++-+.+.++-..+..+|++....++.||. .+|...++
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 777 47889999999975443 2334555667888889999999999999999998777765 45665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-05 Score=67.02 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=129.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
|... ...-..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+.....+ +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 3444 55667777788888877777665432 245666777788899999999999999999987655 78889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+|.+.|++++|..-|.+..+.-.. ++..++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.-.....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999988876333 66777888888888999999999998888764 3477777788888888999999
Q ss_pred HHHHHHHHH
Q 010229 271 ALEVFEKMQ 279 (514)
Q Consensus 271 A~~~~~~m~ 279 (514)
|.++...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988876544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=70.64 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=128.3
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--- 147 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--- 147 (514)
+.....+-.+...+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+... .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 3455567778888999999999999999998763 2222 4677888999999999999999999987542 122
Q ss_pred HhHHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010229 148 RFYNILLRGFLKK--------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 148 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.++..+..++.+. |+.+.|.+.|+.+....+ .+...+..+..... ... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 2455555555554 678889999988877533 12222222211100 000 00 011
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887632 223568888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=70.30 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=127.6
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcCh--HhH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ETY 185 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 185 (514)
....+..+...+...|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45667778888899999999999999988753 2222 46677888899999999999999999875432111 145
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010229 186 EILLDYHVNA--------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 186 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
..+...+... |++++|.+.|+.+...... +...+..+..... .. ... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHHHH
Confidence 5555555544 6788888888888776222 2222222211100 00 000 011224
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010229 258 IIDTFGKYGELVEALEVFEKMQQESI--RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
+...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999887621 223578889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.9e-05 Score=63.16 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=139.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
|+-+.-.|++..++..-...... +.+...-..+-++|...|++..... ++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 34444458888877766654433 2345555566677777777654433 222211 23333333333333333333
Q ss_pred hhH-HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010229 164 GLG-SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 164 ~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
++- .++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2344444443332333333334456777888888887776522 223333334455666777788888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010229 243 IREMGLSLDRQIYNSIIDTFG----KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
|.+.. +..+.+-|..++. ..+.+.+|.-+|++|.++ ..|+..+.+.+..++...|++++|..++++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 77653 4445554444443 344677788888888764 456777777777777788888888888887776543
Q ss_pred CCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Q 010229 319 YPDPKIFITIISCLGELGKWD-VIKKNFENMKD 350 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~ 350 (514)
. ++.+...++-+-...|... ...+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 5666665655555555443 33344444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-05 Score=76.98 Aligned_cols=238 Identities=14% Similarity=0.089 Sum_probs=122.6
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+.-.+.+.++..++..+ . +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 34556777777777777777777777765554 344332 22222344555554444333 1 2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
+.......++.....+...|...+ -+...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222222233322233333333321 233455566666666666666666666666654 22556666666666666 66
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
++|.+++.+.... +...+++.++.++|.++.... |+ +++.-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 6666666655543 444456666666666665541 11 111222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010229 314 QEQ-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 314 ~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
... |..--..++..+-..|...++++++..+++.+++.. +.+.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 221 222223444455556666677777777777777665 334444555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-05 Score=74.45 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=168.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010229 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF 262 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 262 (514)
..-..+...+...|-..+|..+|++.. .|..++.+|...|+..+|..+..+..++ +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556777888899999999998764 3556778899999999999998888874 78899999999988
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010229 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
....-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.+++..+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8888899999998876543 11222223344789999999998876642 224567777777788899999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 343 KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
+.|....... +.+...||.+-.+|.+.++..+|...+.+..+-+. -+..+|...+....+.|.+++|.+.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9998887764 55678899999999999999999999999988774 3445576667777889999999999887765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00017 Score=73.99 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
.+..+..+|-+.|+.++|...|+++.+.. +-|+...+.+...|+.. ++++|.+++.++... |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44455555555566666666666555543 22445555555555555 555555555544432 33
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
...++..+.++|.++....+ + +.+.-..+.+.+... |..--+.++-.+...|...++++++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~--~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNS--D---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hhhcchHHHHHHHHHHhcCc--c---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 34455555555555554322 1 111111222222221 22223344455555555666666666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 448 SVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+++.+.+...+ |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 666666654333 4444555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-05 Score=75.77 Aligned_cols=182 Identities=10% Similarity=0.053 Sum_probs=117.1
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010229 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+.+...+..|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|...+++.....+ -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 4456677777777777888888888888777753 34455666777777778888888888877777554 455666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010229 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 777777888888888888877632 2246777777777777888888888888777653 334444444432 23
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhc
Q 010229 269 VEALEVFEKMQQE----SIRPDIVTWNSLIRWHCKA 300 (514)
Q Consensus 269 ~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 300 (514)
..-...++++.-. |..-.+.+...+|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3334444444332 2223344555555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0002 Score=61.07 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=133.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCH
Q 010229 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198 (514)
Q Consensus 119 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 198 (514)
++-+.-.|.+..++..-...... +.++..-..+-++|...|.+..... .++... .|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 44455567777666554443322 2344444555667777776544332 222211 23333333333333334444
Q ss_pred HHHHH-HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010229 199 DDTWL-IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 199 ~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
++-+. +.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33444443333232333333456777788888877766522 222222223445566677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010229 278 MQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
|.+. -+..|.+.|..++.+ .+.+..|.-+|++|-++ ..|++.+.+....++...+++++|..+++..+....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 7764 255566666666544 34577777777777653 567777777777777777777777777777776653
Q ss_pred CCcHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Q 010229 354 GKIGAIYAILVDIYGQYGRFRD-PEECIAALKL 385 (514)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 385 (514)
. ++.+...++-.-...|...+ ..+.+.+++.
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 34444444443334443333 3344444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=67.85 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
..-..+.-.|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 34455666677777777777654432 4456667778999999999999999999998765 789999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 010229 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (514)
+++.|..-|.+..+..+ -+....+.+.-.+.-.|+.+.|..++......+.. |+..-..+.......|+++.|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999888644 45677888888899999999999999999877533 77777888889999999999998876
Q ss_pred HHHH
Q 010229 242 EIRE 245 (514)
Q Consensus 242 ~~~~ 245 (514)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-05 Score=68.50 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=73.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH-HhcCC--HHHH
Q 010229 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH-VNAGR--LDDT 201 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 201 (514)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655544 45666666666666667777777776666666543 3455555555543 45555 3667
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (514)
.+++++..+.... +..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777766665433 55566666666666777777777777766653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00013 Score=73.87 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEAL-EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITII 329 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 329 (514)
+......+=.+.+.-|..++|- ++..+..+ ++..........+++.-...... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444455555566666666653 33333321 22222222233333322222222 2344577788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010229 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++...... -+......+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchH
Confidence 88888888888888888888765 45566777788888888888888888888887643 34556667777888888888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+. ..|...-|+.++ ++...-..+++++.
T Consensus 172 ~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 8888888888743 334678888888888888888888888888764 223444444443 23334455666665
Q ss_pred hCC
Q 010229 490 SSG 492 (514)
Q Consensus 490 ~~g 492 (514)
-.+
T Consensus 244 ~~~ 246 (694)
T PRK15179 244 VEG 246 (694)
T ss_pred ccc
Confidence 433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-06 Score=65.45 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
+.++++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555443 233 24455667777888888888888877664 446677778888888888888888888888775
Q ss_pred CCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 457 GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
... +...+..+..++.+.|++++|...|++..+ +.|+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 433 667777788888888888888888888876 45543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=64.31 Aligned_cols=93 Identities=12% Similarity=-0.046 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.....+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34555566666666666666666553 3455566666666666666666666666666543 445556666666666666
Q ss_pred ChhhHHHHHHHHHHc
Q 010229 162 LLGLGSRLLMVMEDM 176 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~ 176 (514)
+.++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-05 Score=62.41 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...+++..+.+. .+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34445556666677777777777766543 34556666677777777777777777777665532 24556666666777
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010229 474 RAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
..|++++|...+++..+ +.|+.....
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHH
Confidence 77777777777777766 445554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS 111 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 111 (514)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-05 Score=60.71 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+. .+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444555555666666666666555543 33455555555555566666666666665554432 3444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010229 193 VNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~ 211 (514)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00062 Score=63.35 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=54.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC-hHhHHHHHHHHHhcCCHHHHH
Q 010229 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 202 (514)
..|++++|+..++.+...- +.|+..+......+.+.++.++|.+.++++.... |+ ...+..+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 4455555555555554432 3334444444555555555555555555555432 22 344444555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 010229 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 237 (514)
.++++..... +-|+..|..|.++|...|+..++.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 5555554432 224555555555555555544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0015 Score=55.49 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=126.5
Q ss_pred ccCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010229 264 KYGELVEALEVFEKMQQE---S-IRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKW 338 (514)
Q Consensus 264 ~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 338 (514)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++... ++-+...-..-.--+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345678888888877643 3 444443 3445556666778888888888888764 322322222222234456788
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 010229 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 418 (514)
++|.++++.+++.+ +.|..++-.-+...-..|..-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888776 556666666666666677777787777777765 3567888888888888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCC
Q 010229 419 EPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIG 457 (514)
Q Consensus 419 ~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 457 (514)
.-.. +.+...+..+...+.-.| +..-|.+.|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7652 334455556666555444 4566778888777753
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0013 Score=61.39 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=100.9
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 010229 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQ 410 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 410 (514)
+...|+++.|+..+..+++.. +.|+..+....+.+.+.++.++|.+.++++.... |+ ...+-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 445677888888888876653 5667777777888888888888888888887663 43 4556667778888888888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 411 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|..+++...... +-|...|..|..+|...|+..+|.....+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 888888777653 56778888888888888887777655443 34556777777777777766
Q ss_pred C
Q 010229 491 S 491 (514)
Q Consensus 491 ~ 491 (514)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0017 Score=55.25 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010229 90 LGDIDEAMALLAQMQAL---G-FHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +.+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777776543 2 3344433 4455556667778888888888776642 333332222222234467777
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 010229 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
+|.++++.+.+.++ -|.+++---+...-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 88888887777653 45566665566666667766777777666654 45577777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHC
Q 010229 245 EMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQE 281 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 281 (514)
-.. |.+...+..+.+.+.-.| +++.|.+.|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543 334444455555443333 455566666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=48.70 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP 110 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (514)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.4e-05 Score=69.22 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344444555566666666666666552 33 23345555555666666666666666442 33455555555566666
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010229 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
++.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666665432 234466666666666666666666665553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.3e-06 Score=48.22 Aligned_cols=33 Identities=39% Similarity=0.652 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (514)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-06 Score=46.54 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF 108 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 108 (514)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00019 Score=67.15 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=65.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010229 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 188 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
|+..+...++++.|..+|+++.+.. +.....+.+.+...++..+|.+++.+.++.. +.+..........+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555555555555555542 2233334555555555555666655555432 3345555555555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 268 LVEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
++.|+++.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666554 23 33466666666666666666666665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.3e-06 Score=46.79 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00039 Score=56.16 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
|...+...|++++|+..++...... .....+.....++.+.|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444444444444444322211 1222333444444444444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00039 Score=56.15 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNIL 153 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~l 153 (514)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. ...-.+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 3677777777777766652 222 122333445666677777777777777665422221 223335
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
...+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666666666666665533221 2333455556666666666666666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.022 Score=57.30 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEA--LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
...+++..|+....++.++ .||.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 4557777888877777665 45543 3333443 3477788888877777665543 377777777778888888888
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----------ChHH
Q 010229 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG----------MWKK 235 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~ 235 (514)
|..+|++..... |+......+..+|++.+++.+-.+.--+|.+. .+-+...+=+++......- -..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 888888777643 55666666677777777665444333333322 1223333333333332210 1223
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 236 AVGIVEEIREMG-LSLDRQIYNSIIDTFGKYGELVEALEVF-EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 236 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
|.+.++.+.+.+ -.-+..-.-.-...+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444555555433 1111211222233345566777777777 33333322233344445556666677777777777777
Q ss_pred HHCC
Q 010229 314 QEQG 317 (514)
Q Consensus 314 ~~~g 317 (514)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=66.63 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=103.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHh
Q 010229 107 GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (514)
Q Consensus 107 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 184 (514)
+.+.+......+++.+....+.+.+..++-+.... ....-..|..++++.|.+.|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667777888888888888889999988888764 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 010229 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 230 (514)
+|.||+.+.+.|++..|.++..+|...+.-.++.|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877777778887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=52.09 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
|..+...+.+.|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4456666777788888888888776653 3344566667777777777777877777776654 3344566666677777
Q ss_pred cCChhhHHHHHHHHHH
Q 010229 160 KGLLGLGSRLLMVMED 175 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~ 175 (514)
.|+.+.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.024 Score=55.35 Aligned_cols=352 Identities=13% Similarity=0.116 Sum_probs=181.9
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCC--------ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 010229 109 HPSSISYASLIEALASVGRTLEADAIFQEMVC-FGFNP--------KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (514)
.|.+..|..+...-...-.++-|...|-+... .|++. +...-.+=+. +--|++++|+++|-.+..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 57788888888777766677777776655433 12110 0011111122 22478888888887766532
Q ss_pred cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 010229 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY 255 (514)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 255 (514)
..|..+.+.|++-...++++. .|-.. -...++.+...++....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245566667777666555543 11111 1356777777777777777777777654321
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010229 256 NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL 335 (514)
Q Consensus 256 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 335 (514)
...+.++.+..++++-..+-+.+.+ +....-.|...+.+.|.-++|.+.|-+-- . | ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHH
Confidence 2234555555555555555444433 34445556667777777777776654321 1 1 2344556666
Q ss_pred CCHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CCCCCH----HHHHH
Q 010229 336 GKWDVIKKNFENMKDRGHGKI----------GAIYAILVDIYGQYGRFRDPEECIAALKLE----GLQPSG----SMFCI 397 (514)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~----~~~~~ 397 (514)
++|.+|.++-+...-..+..- ..-...-|..+.+.|+.-.|-+++.+|.++ +.++-. ....+
T Consensus 892 nQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 666666554333211000000 000112344555667666666666666432 222211 11111
Q ss_pred HH-HHH----------HhcCCHHHHHHHHHHhhhC---CC----CCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHC-
Q 010229 398 LA-NAY----------AQQGLCEQTVKVLQLMEPE---GI----EPNLVMLNVLI--NAFGVAGKYKEALSVYHLMKDI- 456 (514)
Q Consensus 398 li-~~~----------~~~g~~~~a~~~~~~~~~~---~~----~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~- 456 (514)
++ .-+ -+.|..++|..+++.-.-. .+ -.....|..+| .-....|.++.|++.--.+.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 11 111 1235555665544432211 00 11122333333 4445668888888765444432
Q ss_pred CCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 457 GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
.+-|....|..+.-+.+....+...-+.|-++....--|+.
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 35566677777776666666676666666666654434443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00033 Score=65.93 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010229 183 ETYEILLDYHVNAGRLDDTWLIINEMRSK--GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 260 (514)
.....+++.+....+.+.+..++.+.+.. ....-+.|..++++.|.+.|..+.++.++..=...|+=||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33334444444444444444444444332 1222233334555555555555555555555555555555555555555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010229 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 261 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555554444433344444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=52.33 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGF-HPSSISYASLIEALASVG--------RTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666677888888888888888888 788888888888777543 23345666677776667777777777
Q ss_pred HHHHHHh
Q 010229 153 LLRGFLK 159 (514)
Q Consensus 153 li~~~~~ 159 (514)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00034 Score=51.45 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334445555666666666666655442 223345555566666666666666666665554322 334555566666666
Q ss_pred CCcchHHHHHHHHHh
Q 010229 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=51.80 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=42.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCC--------CcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 010229 434 INAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAK--------KFHKVPEIYKQMESSGCTPDRKARQILQ 504 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 504 (514)
|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 555555555555544322 1224456667777767777777777777
Q ss_pred HHHHH
Q 010229 505 SALVV 509 (514)
Q Consensus 505 ~a~~~ 509 (514)
.++.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.6e-05 Score=43.74 Aligned_cols=29 Identities=52% Similarity=0.862 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00092 Score=62.88 Aligned_cols=92 Identities=9% Similarity=-0.126 Sum_probs=68.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010229 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKY 443 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 443 (514)
...+...|++++|++.|+++...+. .+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4455667888888888888877643 356677777778888888888888888887753 33566777777888888888
Q ss_pred HHHHHHHHHHHHCC
Q 010229 444 KEALSVYHLMKDIG 457 (514)
Q Consensus 444 ~~A~~~~~~m~~~~ 457 (514)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.027 Score=49.70 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhH---HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISY---ASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
....+.+.|++++|++.|+++... .|+. ... -.++.++.+.+++++|...+++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445556789999999999998876 3332 222 345677788888999999888888753
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=50.58 Aligned_cols=96 Identities=17% Similarity=0.019 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNIL 153 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l 153 (514)
+-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4456666677777777777777776542 22 234555667777777777777777776654211 113445566
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 666666777777777777666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.068 Score=54.01 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=135.3
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 80 YNKSIQYC--CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 80 ~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
|..++.++ .|.|+.++|..+++.....+. .|..|...+-..|.+.++.++|..+|+..... .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44555655 688999999999998877653 38889999999999999999999999999875 47788888888999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-C---------HHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-R---------LDDTWLIINEMRSKG-FQLNSFVYGKVIGL 226 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~ 226 (514)
.+.+++.+-.++--++-+. .+.+...+=+++..+.+.- . ..-|.+.++.+.+.+ .--+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9988776544433333332 2223434334444443321 1 223555666666554 21122223333445
Q ss_pred HHccCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010229 227 YRDNGMWKKAVGIVE-EIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
+...|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++-.++..+|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 667888999999984 44444445566666777888889999999999888888875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00072 Score=61.24 Aligned_cols=131 Identities=10% Similarity=0.118 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA-LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777777777777776543 2223333333333 22245566677777777664 35566677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 2111 236777777777777777777777666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=52.99 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010229 90 LGDIDEAMALLAQMQALGFH-PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
+|+++.|+.+|+++.+.... ++...+..+..++.+.|++++|.++++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777665311 1334445567777777777777777766 2221 1222333344666677777777777
Q ss_pred HHHH
Q 010229 169 LLMV 172 (514)
Q Consensus 169 ~~~~ 172 (514)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.6e-05 Score=53.45 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHH
Q 010229 405 QGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554211 1233444456666666666666666655 221111 22333344556666666666666
Q ss_pred HHHH
Q 010229 484 IYKQ 487 (514)
Q Consensus 484 ~~~~ 487 (514)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=61.32 Aligned_cols=92 Identities=16% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...+...|++++|++.|+++.+.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567788888888888888764 4466777888888888888888888888888764 44666777788888888888
Q ss_pred hhHHHHHHHHHHcC
Q 010229 164 GLGSRLLMVMEDMG 177 (514)
Q Consensus 164 ~~A~~~~~~~~~~~ 177 (514)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887754
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00087 Score=60.70 Aligned_cols=145 Identities=6% Similarity=0.036 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ-YGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 401 (514)
.+|..++...-+.+..+.|..+|.++.+.+ ..+..+|-....+-.+ .++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 456777777777778888888888887543 2334444444444333 45555588888887765 34566777777787
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010229 402 YAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+. -|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88888888888888887765 22222 47777777777788888888888777763 23333344444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=52.26 Aligned_cols=93 Identities=10% Similarity=-0.072 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.+...+...|++++|..+|+.+.... +-+..-|..|...+-..|++++|+..|....... +.|...+-.+..++.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34455667788888888888877664 3456667777777778888888888888887766 466777777788888888
Q ss_pred ChhhHHHHHHHHHHc
Q 010229 162 LLGLGSRLLMVMEDM 176 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~ 176 (514)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888776653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=53.27 Aligned_cols=131 Identities=14% Similarity=0.027 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
....|..+...+.+.|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788888889999999999999886532222 4578888889999999999999999988754 3456667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
...+...|+...+..-++.... .+++|.+++++.... ++..+..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 7777777776554443333221 245666666666654 33335555555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0021 Score=49.76 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH
Q 010229 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPN----LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PDLVTYSTL 468 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 468 (514)
+..+...+...|++++|.+.|..+.... |+ ...+..+..++.+.|++++|.+.|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444555555555555555554431 11 233444555555556666666666655543211 113345555
Q ss_pred HHHHHcCCCcchHHHHHHHHHh
Q 010229 469 MKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..++.+.|+.++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555556666666666665555
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.079 Score=52.50 Aligned_cols=339 Identities=14% Similarity=0.100 Sum_probs=186.3
Q ss_pred HCCCCCCHhhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hhHHHHHHHHHHc
Q 010229 105 ALGFHPSSISYA-----SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDM 176 (514)
Q Consensus 105 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 176 (514)
.-|++.+..-|. .+|+-+...+.+..|+++-..+...-... ..+|.....-+.+..+. +-+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555555443 45666777788888888877765321111 56677777777665432 2222222233221
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 010229 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ----LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR 252 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 252 (514)
. ..-.+|..+..-....|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.+. .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 34457778888888889988888877643222110 12222334444555566666666655555442 111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHHH----HCCCCCCHHHHH
Q 010229 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF--TQMQ----EQGFYPDPKIFI 326 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~--~~m~----~~g~~p~~~~~~ 326 (514)
..+... ..+...|..+|.+..+.. |..+ +-..| +.++-.+++..| +... ..|..|+. .
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 111111 123445666666654421 1111 11222 222222222211 1110 12333333 2
Q ss_pred HHHHHHHccCCHH---HH-------HHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010229 327 TIISCLGELGKWD---VI-------KKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 327 ~ll~~~~~~~~~~---~a-------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.....+.+..... ++ .++.+.+. +.+......+.+--+.-+...|+..+|.++-.+.+ -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 11 11222222 12323344455566666778899999988887765 5788889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
-.-+.+++..+++++-+++-+... ...-|...+.+|.+.|+.++|.+++-+.... .-...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence 888999999999998887766654 2345777889999999999999998765321 1456777888
Q ss_pred CCcchHHHH
Q 010229 476 KKFHKVPEI 484 (514)
Q Consensus 476 g~~~~a~~~ 484 (514)
|++.+|.++
T Consensus 784 ~~~~eAad~ 792 (829)
T KOG2280|consen 784 GDVKEAADL 792 (829)
T ss_pred ccHHHHHHH
Confidence 888777654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.036 Score=50.49 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010229 292 SLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
.+...+.+.|++++|.++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445555555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0038 Score=49.70 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
+..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|.......+. |+..+..+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 3444567777888888777776653 335556667777777778888888888877766543 66777777777778888
Q ss_pred cchHHHHHHHHHhC
Q 010229 478 FHKVPEIYKQMESS 491 (514)
Q Consensus 478 ~~~a~~~~~~m~~~ 491 (514)
.+.|.+.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.075 Score=52.14 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=65.2
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH----------HHHHhcCChHHHHHHHHHHHHcC
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI----------EALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|.+..|..+...-.+.-.++-|...|-+.... +......-+- ..-+--|++++|.++|-++-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3466778887777767777777777777655432 2221111111 11223488999999987776543
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc----ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR----NQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
..|..+.+.|++-...++++. -|-.. -...|+.+...+.....+++|.+.|..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666666555444432 11111 123555555555555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00083 Score=58.64 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=65.2
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010229 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (514)
-..+.+++++|+..|.+.+.... -|.+.|..-..+|.+.|.++.|++-.+...... +--..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 34566777777777777776542 355666666777777777777777776666542 2223567777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHH
Q 010229 446 ALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
|++.|++..+ +.|+-.+|..=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 7777777666 4555555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.022 Score=51.84 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=62.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|+...+.|-..|++++|.+.|.+..+.....+ ...|......|.+ .++++|.+.+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH--------------
Confidence 4577777777777888888877776543210000 1122222222222 2444444444433
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHH
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGL 226 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~ 226 (514)
+..|...|++..|-+++..+- ..|-.. |++++|++.|.+..+. +... -...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344556666655555444433 234444 5666666666655332 1000 01223334444
Q ss_pred HHccCChHHHHHHHHHHHH
Q 010229 227 YRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~ 245 (514)
+.+.|++++|.++|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0047 Score=51.54 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010229 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344445555555555555555555544322221 2345555555666666666666666655532 2234444455555
Q ss_pred HHHcCC
Q 010229 437 FGVAGK 442 (514)
Q Consensus 437 ~~~~g~ 442 (514)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=57.49 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHH
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (514)
.+.++|++|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 44445555555555554442 3344444444455555555555555444444432 122334444555555555555555
Q ss_pred HHHHHHHH
Q 010229 168 RLLMVMED 175 (514)
Q Consensus 168 ~~~~~~~~ 175 (514)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55444444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.002 Score=53.76 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH
Q 010229 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE 183 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 183 (514)
..+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3466677777777764 36677777788888888988899999988887754 2221 001111110
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 113 ------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 ------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 011223445566666666666666666666666555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=53.45 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
..|..+...+...|++++|...|+........+ ...++..+...+...|++++|.+.+++...... ....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 344555555556666666666666665432111 123555566666666666666666666655321 22334444444
Q ss_pred HHH-------hcCCHHHHHHHH
Q 010229 191 YHV-------NAGRLDDTWLII 205 (514)
Q Consensus 191 ~~~-------~~g~~~~A~~~~ 205 (514)
.+. ..|+++.|+..+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 444 445555444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0028 Score=52.94 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHHH
Q 010229 391 SGSMFCILANAYAQ-----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----------------AGKYKEALSV 449 (514)
Q Consensus 391 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 449 (514)
+..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 33444444444432 24555555555555555655666666665555432 1234667888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010229 450 YHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
+++|...|+.||..++..++..+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888888876555
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.004 Score=51.75 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=72.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++..... +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45667888888889999999999999997663222 23578889999999999999999999998753 3445566666
Q ss_pred HHHHH-------hcCChhhHHHHHHH
Q 010229 154 LRGFL-------KKGLLGLGSRLLMV 172 (514)
Q Consensus 154 i~~~~-------~~g~~~~A~~~~~~ 172 (514)
...+. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 66776655554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.068 Score=47.21 Aligned_cols=73 Identities=10% Similarity=-0.066 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH---HHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFY---NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
....+...|++++|.+.|+.+...- +-+.... -.++.++.+.+++++|...+++..+..+......|...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3444455677777777777776643 1112221 23455666777777777777777665433333333333333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=58.13 Aligned_cols=265 Identities=14% Similarity=0.079 Sum_probs=163.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHH--HH--cCCC-CChHhHHHHHH
Q 010229 85 QYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEM--VC--FGFN-PKLRFYNILLR 155 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~--~~--~g~~-~~~~~~~~li~ 155 (514)
.-+|+.|+....+.+|+...+-|. -|. .+|..+.++|.-.+++++|++....= +. .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357999999999999999999873 343 45777788888999999999876421 11 1100 11112223344
Q ss_pred HHHhcCChhhHHHHHHH----HHHcCC-CcChHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 010229 156 GFLKKGLLGLGSRLLMV----MEDMGI-CRNQETYEILLDYHVNAGR--------------------LDDTWLIINEMRS 210 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 210 (514)
.+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.+.|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666543222 122110 0122344445666654432 2334444443221
Q ss_pred ----cCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010229 211 ----KGF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE----MGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 211 ----~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
.|- -.--..|..|.+.|.-.|+++.|+..++.-+. .|-. .....+..+.+++.-.|+++.|.+.|.....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01224566677777788999999988875432 2211 2245677788888899999999999876432
Q ss_pred ----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 281 ----ES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE----Q-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 281 ----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
.| ......+..+|.+.|.-..++++|+.++.+-.. . ...-....+.++..++...|..++|..+.+..++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 122445667788888888899999988876432 1 1223456788899999999999999887766554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00056 Score=46.32 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 435 NAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..+.+.|++++|.+.|+++.+.... +...+..+..++.+.|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555544322 344455555555555555555555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=44.27 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHH
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRG 156 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~ 156 (514)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44556667888888888888877765433 3345566677777888888888887776642 32 1222223335
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
+...|+.++|.+.+-.... ++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5566777777776655444 3333444444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0095 Score=58.75 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444555555555555555533 3444555555555555555555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00073 Score=46.23 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
.+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 45677777777777776663 3466667777777777777777777777777653 4433333
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0006 Score=46.68 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555554432 22444444555555555555555555555544
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=57.86 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--------CcchHHHHHHHHH
Q 010229 318 FYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG--------RFRDPEECIAALK 384 (514)
Q Consensus 318 ~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~ 384 (514)
.+.+...|...+.+.... ++.+.|..+|+++.+.. +.....+..+..+|.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344555566555553322 12456666666666654 223334443333332211 1223333333332
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 010229 385 LE-GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 385 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 463 (514)
.. ....+...|.++.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 22 12334567777766677789999999999999886 4788889999999999999999999999988754 4444
Q ss_pred HH
Q 010229 464 TY 465 (514)
Q Consensus 464 ~~ 465 (514)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=46.31 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-CcchHHHHHHHHHh
Q 010229 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMES 490 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 490 (514)
..+|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445566666666666666666666666654322 4455666666666666 46666666665554
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.066 Score=43.56 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---CCCHHHH
Q 010229 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPSGSMF 395 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~ 395 (514)
.|+...-..+..+..+.|+..+|...|.+...--+..|......+.++....+++.+|...++++.+.+. .||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 4555555566666667777777777776666555555666666666666667777777777776665432 3333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
-.+.+.+...|.+.+|...|+..... -|+...-......+.++|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34566777777777777777777765 444444334455566777776665544444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.075 Score=45.63 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
....+.+.|++++|++.|+.+...- -+--....-.++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445567788888888888887752 1112345566777888888888888888887764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.023 Score=50.17 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCcCHHHHH
Q 010229 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA---GKYKEALSVYHLMKDIGISPDLVTYS 466 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 466 (514)
-|...|-.|...|...|++..|..-|.+..+.. .+|...+..+..++..+ ....++.++|+++...... |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 355667777777777777777777776666542 44555555555555433 2345666677777665433 555666
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHh
Q 010229 467 TLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 666667777777777777777766
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.16 Score=46.88 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=135.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
....-..+.+..++.+|+..+....+.. +.+..-|..-...+...|++++|.--.+.-++.. +-....+.-.-+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3445556777888999999999988875 3445556666667777778887776665554421 1112233333344444
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHH-HHHHccCChHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI-GLYRDNGMWKKAV 237 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll-~~~~~~g~~~~a~ 237 (514)
.++..+|.+.++.-. .+ ....++..++....... +|.-.++..+- .++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443110 00 01111111111111111 11122222221 2334455555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCC
Q 010229 238 GIVEEIREMGLSLDRQIYNSIID--TFGKYGELVEALEVFEKMQQESIRPDIVT-------------WNSLIRWHCKAGD 302 (514)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------------~~~li~~~~~~g~ 302 (514)
+.--..++.+ ..+ .+...++ .+.-.++.+.|...|++....+ |+... |..=.+-..+.|+
T Consensus 190 ~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 190 SEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 5544444432 111 1111121 1223344555555555544331 22111 1111223456777
Q ss_pred hHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010229 303 VAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 303 ~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
+..|.+.|.+.+.. ...|+...|........+.|+.++|+.--+...+.+ +.-...+..-..++...+.+++|.+-
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777643 234445556556666667777777776666665543 11122333333444556677777777
Q ss_pred HHHHHHc
Q 010229 380 IAALKLE 386 (514)
Q Consensus 380 ~~~~~~~ 386 (514)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 7766544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=47.04 Aligned_cols=417 Identities=11% Similarity=0.103 Sum_probs=230.2
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
-|..+|-.||..|..+|.+++..+++++|..- ++--...|..-+.+=...++++....+|.+.+... .+...|..-+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 46788999999999999999999999999853 23335578888887778889999999999988764 4566777777
Q ss_pred HHHHhcCChh------hHHHHHHHHHH-cCCCcC-hHhHHHHHHHHH---hcCC------HHHHHHHHHHHHHcCCCCCh
Q 010229 155 RGFLKKGLLG------LGSRLLMVMED-MGICRN-QETYEILLDYHV---NAGR------LDDTWLIINEMRSKGFQLNS 217 (514)
Q Consensus 155 ~~~~~~g~~~------~A~~~~~~~~~-~~~~~~-~~~~~~li~~~~---~~g~------~~~A~~~~~~m~~~g~~~~~ 217 (514)
.-.-+.+..- ...+.|+-... .++.|- ...|+..+..+- ..|. .+...+.+.+|+.-.+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 6555543221 12334444333 234333 345666555432 2333 44555566666543221101
Q ss_pred hhHHH------HHH-HHH------ccCChHHHHHHHHHHHH--cCCC----CCHHH-----------HHHHHHHHhccC-
Q 010229 218 FVYGK------VIG-LYR------DNGMWKKAVGIVEEIRE--MGLS----LDRQI-----------YNSIIDTFGKYG- 266 (514)
Q Consensus 218 ~~~~~------ll~-~~~------~~g~~~~a~~~~~~~~~--~~~~----~~~~~-----------~~~li~~~~~~~- 266 (514)
..|+. =++ +-+ ..--+-.|.+.++++.. .|+. .+..+ |-.+|+.-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 11111 111 000 11224455666665542 2221 11122 222333221111
Q ss_pred ----C-HH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010229 267 ----E-LV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDV 340 (514)
Q Consensus 267 ----~-~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 340 (514)
+ .. ..--++++...- +.-....|----.-+...++-+.|+.....-.. ..|+... .+-..|.-.++-+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~~--~lse~yel~nd~e~ 351 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLTM--FLSEYYELVNDEEA 351 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchhe--eHHHHHhhcccHHH
Confidence 1 11 111222332221 111233333333334455666666665544332 1222100 01111111111111
Q ss_pred HHHHHHHH-----------------------------HhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC-CCC
Q 010229 341 IKKNFENM-----------------------------KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQP 390 (514)
Q Consensus 341 a~~~~~~~-----------------------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 390 (514)
....|+.. .-.....-..+|...++...+..-++.|..+|-+..+.+ +.+
T Consensus 352 v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h 431 (660)
T COG5107 352 VYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH 431 (660)
T ss_pred HhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 11111110 000001124566777777778888899999999998888 567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHH
Q 010229 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYST 467 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ 467 (514)
+..++++++..++ .|+...|.++|+.-... -||...| +-.+.-+...++-+.|..+|+...+. +..+ ...|..
T Consensus 432 ~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~k 507 (660)
T COG5107 432 HVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDK 507 (660)
T ss_pred ceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHH
Confidence 7888888887664 57888899998875554 3444433 55666777889999999999966543 2223 467889
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010229 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
++..-..-|+...+..+-++|.+ +-|...+......
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~S 543 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHH
Confidence 99888889999888888888887 5666655444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.084 Score=42.99 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHH
Q 010229 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEIL 188 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 188 (514)
|++.--..+..++.+.|+..+|...|++...--+..|....-.+.++....+++..|...++.+-+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444455555555555555555555544323334444444455555555555555555554443210 112223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010229 189 LDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~ 210 (514)
.+.+...|.+.+|...|+...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.033 Score=42.69 Aligned_cols=93 Identities=20% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc--ChHhHHHHHHHHH
Q 010229 118 LIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEILLDYHV 193 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 193 (514)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|+......+.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887775543 3345566677777788888888887776542210 1122222334556
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRS 210 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~ 210 (514)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66777777776655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=43.29 Aligned_cols=58 Identities=24% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777664 335566667777777777777777777777654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=44.02 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVC 140 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 140 (514)
+..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666777777777777777766653 334556666666666666 56777776666654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.007 Score=55.20 Aligned_cols=131 Identities=17% Similarity=0.022 Sum_probs=74.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh----cCC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CC-CCCHH
Q 010229 324 IFITIISCLGELGKWDVIKKNFENMKD----RGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLE----GL-QPSGS 393 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 393 (514)
.|..+...|.-.|+++.|+..++.-+. .|- ......+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 444555555566777777766554332 121 112345666777777778888877777654321 11 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPE----G-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+.-+|...|.-..++++|+.++.+-... + ..-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445666666666777777766543221 0 11234567778888888888888777666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.12 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=9.1
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 010229 224 IGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~ 245 (514)
+.++.+.|+++.|...+++.++
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.1 Score=48.09 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=33.2
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHhcC
Q 010229 285 PDIVTWNSLI-RWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS--CLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 285 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
|.-.+|..+- .++.-.|++++|...--...+.. ....+..+++ ++.-.++.+.+...|.+.++.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 3334444332 33455677777776665555432 1122223333 2334556777777777776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=49.14 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH-----hCCCCCCHHHHHHH
Q 010229 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQIL 503 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l 503 (514)
...++..+...|++++|.++.+.+....+- |...|..++.+|...|+..+|.+.|+++. +.|+.|+..+....
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 344555555666666666666666654322 55566666666666666666666666654 23666666555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.065 Score=47.41 Aligned_cols=101 Identities=9% Similarity=-0.023 Sum_probs=57.1
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCChhhH
Q 010229 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA---GRLDDTWLIINEMRSKGFQLNSFVY 220 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~ 220 (514)
+-|...|-.|...|...|+++.|...|....+... +|...+..+..++... ....++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 45566666666666666666666666666655432 3444454444444332 2344566666666655322 44444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc
Q 010229 221 GKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555666666666666666666665
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=43.38 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHH-----
Q 010229 325 FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA----- 399 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----- 399 (514)
...++..+...+.+......+.++++...+.++.....|...-.+.|+.+.|...|++..+..-+.+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555566666777777777777776666677777777777778888888888887766544344444444333
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
..|.-.+++..|...+.+..... +.|....|.-.-+..-.|+..+|++.++.|.+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 23445567888888887777653 3355555555555556788999999999988753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0043 Score=43.07 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555554322 444455555555555555555555555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.02 Score=51.03 Aligned_cols=96 Identities=15% Similarity=0.012 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNI 152 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ 152 (514)
.|+..+..+.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.- -+.....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555556667777777777777765 3432 456666777777777777777777776532 0112333344
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+...+...|+.+.|.++|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566667777777777666653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.027 Score=50.18 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH
Q 010229 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PDLVTYSTL 468 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 468 (514)
|...+....+.|++++|...|+.+.+. -|+. ..+..+..+|...|++++|...|+.+.+.-.. .....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 433333334556777777777766654 2332 34556667777777777777777777643111 123344455
Q ss_pred HHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 469 MKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
...+...|+.++|.+++++..+ ..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 5666677777777777777766 345443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.6 Score=46.63 Aligned_cols=332 Identities=14% Similarity=0.075 Sum_probs=190.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT--LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
-..+|+-+...+.|..|+++...+...-..- ...|.....-+.+..+. +++.+..++=...-. -....|..+.+-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 3557888888899999999988876432222 56677777777665332 223333332222212 3345677777777
Q ss_pred HhcCChhhHHHHHHHHHHcCCC----cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010229 158 LKKGLLGLGSRLLMVMEDMGIC----RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
..+|+.+.|..+++.=...+-. .+..-+...+.-..+.|+.+-...++..+...- +...+.. ...+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhc
Confidence 7899999999887653322110 122234455666677777777777776665431 1111111 12234
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH--HHHH----HCCCCCCHHHHHHHHHHHHhcCCh---H
Q 010229 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF--EKMQ----QESIRPDIVTWNSLIRWHCKAGDV---A 304 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--~~m~----~~~~~p~~~~~~~li~~~~~~g~~---~ 304 (514)
..|..+|.+..+.. +..+ +-+.|- .++-..+...| +... ..+..|+ .....+.+++.... +
T Consensus 589 p~a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred hhhhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 55666666665532 1111 112222 22222222222 1110 1122233 23344445544431 1
Q ss_pred HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010229 305 KA-------LELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 305 ~A-------~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
+| +.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11 222222221 2333344445555666777888888887765543 46677888888999999999887
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
+++-+..+. +.-|.-.+.+|.+.|+.++|.+++.+.... .....+|.+.|++.+|.++--
T Consensus 735 ekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 735 EKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 777665432 345778899999999999999998876432 157788999999999987643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.26 Score=42.19 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=104.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|.....+|....++++|...+.+..+.- ..|. ++-.. ...++.|..+.+++.+. +--+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 456677778888888888888777766321 1122 11111 22345666666666553 23344566677788
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHccCC
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK---G--FQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~ll~~~~~~g~ 232 (514)
..+|..+.|-..+++.-+. ..+.++++|+++|.+.... + ...-...+...-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888888777776542 2344555666666554321 0 00011223333344555555
Q ss_pred hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChH
Q 010229 233 WKKAVGIVEEIREM----GLSLD-RQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+++|-..+.+-... .-.++ -..|-..|-.|.-..++..|.+.++.-.+. .-+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554443332111 00111 122334444455555666666666663322 1122445555566554 345555
Q ss_pred HHHHH
Q 010229 305 KALEL 309 (514)
Q Consensus 305 ~A~~~ 309 (514)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 54433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.47 Score=44.23 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010229 292 SLIRWHCKAGDVAKALELFTQMQEQG---FYPDPKIFITIISCLGE---LGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
.++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45556888888888888888887641 11122222233344555 7788888888877665555677777777766
Q ss_pred HHH
Q 010229 366 IYG 368 (514)
Q Consensus 366 ~~~ 368 (514)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.48 Score=43.67 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=66.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010229 325 FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQ 404 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (514)
.+..+.-+...|+...|.++-.+. . -|+...|...+.+++..+++++-..+... +-++.-|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344455555666666666554433 2 35666777777777777777766665432 1123557777777777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 405 QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
.|+..+|..+...+. +..-+..|.++|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 888777777776622 2345667777888877776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.013 Score=47.42 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCcChHh
Q 010229 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME-----DMGICRNQET 184 (514)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 184 (514)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.++|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555555555555555555543 3455555555555555555555555555543 2355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=40.07 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010229 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|.+.+++++|+++++.+...+ +.+...|......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777777664 4455666666777777777777777777776653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.6 Score=43.85 Aligned_cols=409 Identities=12% Similarity=0.128 Sum_probs=216.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCChHHHHHHHHHHHHc--CCCC--------
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA--SVGRTLEADAIFQEMVCF--GFNP-------- 145 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~--g~~~-------- 145 (514)
+.-+.+|++|.. .+.+.....+....+. .| ...|..+..++. +.+.+.+|.+.+..-... +..+
T Consensus 47 vl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 47 VLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 345667777765 4455555555555443 22 334555554433 667788888777655443 2221
Q ss_pred ----ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CcChHhHHHHHHHHHhc--------CC-------HHHHH
Q 010229 146 ----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI----CRNQETYEILLDYHVNA--------GR-------LDDTW 202 (514)
Q Consensus 146 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~--------g~-------~~~A~ 202 (514)
|...-+..++++...|++.+++.+++++...=. .-+..+|+.++-.+.+. .. ++-+.
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 222335566777788888888888888765433 25777777755444332 11 12222
Q ss_pred HHHHHHHHc------CCCCChhhHHHHHHHHHcc--CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 010229 203 LIINEMRSK------GFQLNSFVYGKVIGLYRDN--GMWKKAVGIVEEIREMGLSLDR-QIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 203 ~~~~~m~~~------g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~ 273 (514)
-..++|... .+-|....+..++....-. .+..--.++++.....-+.|+- -+...++..+.+ +.+++..
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 222233221 1233333333333322211 1222233344444443344443 233445555544 5556665
Q ss_pred HHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH-cc---CCH
Q 010229 274 VFEKMQQESIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLG-EL---GKW 338 (514)
Q Consensus 274 ~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------ll~~~~-~~---~~~ 338 (514)
+-+.+....+. .=+.++..++....+.++..+|.+.+.-+... .|+...-.. +-+..+ .- -+.
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 55554433111 12456788888888999999998888877643 333221111 111112 11 112
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHH---HHHHhcCC-cchHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhc---CC
Q 010229 339 DVIKKNFENMKDRGHGKIGAIYAILV---DIYGQYGR-FRDPEECIAALKLEGLQPSGSMFCILA----NAYAQQ---GL 407 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~ 407 (514)
..-..+++.+...++... .....|+ .-+-+.|. -++|..+++.+..-. .-|...-|.+. .+|.+. ..
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 233344555544433211 1112222 22344455 778899998887642 22333322222 233222 23
Q ss_pred HHHHHHHHHHhhhCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchH
Q 010229 408 CEQTVKVLQLMEPEGIEPNL----VMLNVLINA--FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (514)
Q Consensus 408 ~~~a~~~~~~~~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (514)
+..-.++-+-+.+.|++|-. ..-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 44444555555667877643 344555443 4567999888765444444 778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 010229 482 PEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 482 ~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+++.. ++|+..+++.=
T Consensus 515 ~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 515 WEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHh-----CCCchhhHHHH
Confidence 999986 46676666643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.29 Score=47.79 Aligned_cols=252 Identities=13% Similarity=0.154 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccCCH--HHHHHHHHHHHHCCCCC
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGI---------VEEIREMGLSLDRQIYNSIIDTFGKYGEL--VEALEVFEKMQQESIRP 285 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p 285 (514)
+..+.+=+..|...|.+++|.++ ++.+... ..+...++..=++|.+..+. -+...-+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33344445566677777776653 2222111 12333445555667666543 34445566777888777
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHhc--CCCCcH
Q 010229 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFI-----TIISCLGELGKWDVIKKNFENMKDR--GHGKIG 357 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 357 (514)
+... +...++-.|++.+|-++|.+- |...-. ..|+ -..+-+...|..++-..+.++-.+. +....
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 7653 334455667777777776542 222100 0010 1122233344433333332222110 11111
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHH------HHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAA------LKLEGL---QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 428 (514)
.+...++...|+.++|..+.-+ +.+-+- ..+..+...+...+.+...+.-|-++|..|-+.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1233444556666666654321 111111 122334444444455556667777777777542
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH-----------HHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-----------TYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
..++......+++++|..+-++..+ +.||+. -|...-.+|.++|+..+|.++++++...
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3567777888888888888777654 233332 2344456788888888888888888654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.41 Score=41.45 Aligned_cols=146 Identities=8% Similarity=-0.031 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-----HH
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-----NV 432 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~ 432 (514)
.+.+.++..+.-.+.+.-..++++++++.+...++.....|.+.-.+.|+.+.|...|+...+..-..|..+. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777778888889999999999887778889999999999999999999999977654323333333 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010229 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a 506 (514)
....|.-++++.+|...+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.. ..|...+-+.++--
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHH
Confidence 344566678899999999988776543 555555544455567889999999999997 56766665544433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.067 Score=42.99 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=37.9
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
+.|++++|..+|+-+...+. -+..-|..|..++-..+++++|...|......+ .-|...+-....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 34555555555555444332 223334444444444455555555554433322 1122223334445555555555555
Q ss_pred HHHHHHH
Q 010229 449 VYHLMKD 455 (514)
Q Consensus 449 ~~~~m~~ 455 (514)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.43 Score=46.75 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010229 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (514)
Q Consensus 201 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 275 (514)
.+.-+++++++|-.|+.... ...|+-.|++.+|-++|.+--.. |..+.+|.....+|.|.+++
T Consensus 619 li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHh
Confidence 33445666777766766433 34556677788887777653221 22344454445555555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.15 Score=41.11 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=70.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...+-..|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|......+ ..|...+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334457799999999999887765 3456667778888888899999999998877655 34555566667888899999
Q ss_pred hhHHHHHHHHHHc
Q 010229 164 GLGSRLLMVMEDM 176 (514)
Q Consensus 164 ~~A~~~~~~~~~~ 176 (514)
+.|...|+...+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888773
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0077 Score=42.43 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+|+.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666667777776666665421 211 11 3456666666777777777777766654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.84 Score=42.03 Aligned_cols=290 Identities=15% Similarity=0.084 Sum_probs=159.5
Q ss_pred HHHHHHHHHh--cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010229 150 YNILLRGFLK--KGLLGLGSRLLMVMEDMGICRNQETYEILLDYH--VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225 (514)
Q Consensus 150 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 225 (514)
|..|-.++.. .|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. |+.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 4444444333 46666666665544321 224555555555433 346888888888888875 3333322222
Q ss_pred ----HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH
Q 010229 226 ----LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVT--WNSLIRWHC 298 (514)
Q Consensus 226 ----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~ 298 (514)
...+.|..+.|.++-+..-..- +.-...+.+.+...+..|+++.|+++.+.-.+.. +.+++.- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2335677777777777766542 2335567777888888888888888887765432 3344322 122222211
Q ss_pred h---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcc
Q 010229 299 K---AGDVAKALELFTQMQEQGFYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 299 ~---~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
. .-+...|...-.+..+ +.||-.- -..-..++.+.|+..++-.+++.+-+....|+ ++ ..|.+..--+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gd 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGD 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCC
Confidence 1 1234444444444333 3444321 22234567778888888888887777654333 22 2233333333
Q ss_pred hHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Q 010229 375 DPEECIAALKLE-GLQPS-GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV-AGKYKEALSVYH 451 (514)
Q Consensus 375 ~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~ 451 (514)
.+..-+++.... ..+|+ ......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+-
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 444444443321 22333 344455566666777777777666665543 6777777766665443 378888887777
Q ss_pred HHHHC
Q 010229 452 LMKDI 456 (514)
Q Consensus 452 ~m~~~ 456 (514)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 77654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.4 Score=44.69 Aligned_cols=179 Identities=15% Similarity=0.208 Sum_probs=117.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH----HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE----ALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.....-|+.+++...+.-|+.+.+.-. .+..+...+.. -+.+.|++++|...|-+.... +.| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 344567777788888888887765422 24444444444 445789999998887665532 122 235
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
|.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..|.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5666677777777788888888888 566777889999999999888766665543 2221 12245566777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
++|..+-..... .......++ -..+++++|++.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 777666544432 333444443 35678999999988774
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.98 Score=41.65 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++..++-.. .-++.-|..+++.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888877766552 46888888888899999998887765432 123466888888888
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+.-.+..
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888888887762 1 2445677888888888877655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.16 Score=39.42 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHcC
Q 010229 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~ 475 (514)
.+.|+..+..+++.+|+..|++..|.++.+... ..+++.+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999875 457777788899888766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=40.21 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPE----GI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+++.+...|...|++++|++.|++..+. |- .|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34666666777777777777777665532 10 122 45677888888888888888888887653
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.16 Score=49.13 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010229 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 297 (514)
.-.+.++..+.+.|..+.|+++-..-.. -.+...+.|+++.|.++.++. ++...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 3355555666666666666555433221 123344556666666554332 2455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHH
Q 010229 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 377 (514)
.+.|+++-|.+.|.+... +..++-.|.-.|+.+...++.+.....|- ++....++...|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444455555666555555555554441 333333444445555555
Q ss_pred HHHHH
Q 010229 378 ECIAA 382 (514)
Q Consensus 378 ~~~~~ 382 (514)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.056 Score=47.04 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred CCCccCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010229 71 SGEEFSGNSYNKSIQYCCKL-----GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
.+.+.|-.+|-+.+..+... +.++=....++.|.+.|+..|..+|+.|++.+-+..-.. ..+|+..
T Consensus 61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~------- 131 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKV------- 131 (406)
T ss_pred CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHH-------
Confidence 34455566666666655432 344444455556666666666666666666553322110 0001000
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 010229 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL-DDTWLIINEM 208 (514)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 208 (514)
.+ -| -.+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..++.-.|
T Consensus 132 -------F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 -------FL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -------Hh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 00 00 012245677777777777777777777777777766643 3344444444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.5 Score=36.25 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010229 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
....+......|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334445555555555555555554322 44555555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.088 Score=49.69 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 010229 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 465 (514)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.++++.+.+ . ..|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhH
Confidence 35778999999999999999999999998886 5663 358999999999999999999999998852 1 123
Q ss_pred HHHHH--HHHcCCCcchHHHHHHHHHhCCC
Q 010229 466 STLMK--AFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 466 ~~l~~--~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
..+.. .+....+..+..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22111 11122334577778888887765
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.5 Score=41.08 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-+.+++.++.-.|++++|.+..++|.+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444444445555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.15 Score=39.53 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH
Q 010229 455 DIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGCTPDRKARQILQSALVV 509 (514)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~a~~~ 509 (514)
.....|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++=...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999886 5888889999988875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.6 Score=41.16 Aligned_cols=374 Identities=14% Similarity=0.083 Sum_probs=206.2
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 010229 80 YNKSIQYC--CKLGDIDEAMALLAQMQAL--GFHP------------SSISYASLIEALASVGRTLEADAIFQEMVCFG- 142 (514)
Q Consensus 80 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g- 142 (514)
|-.+..++ -+.+++++|++.+..-.+. +..+ |...=+..+..+...|++.+++.+++++...=
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444443 4779999999988766554 2222 12223556778889999999999999887643
Q ss_pred ---CCCChHhHHHHHHHHHhcC--------Ch-------hhHHHHHHHHHHc------CCCcChHhHHHHHHHHHhcC--
Q 010229 143 ---FNPKLRFYNILLRGFLKKG--------LL-------GLGSRLLMVMEDM------GICRNQETYEILLDYHVNAG-- 196 (514)
Q Consensus 143 ---~~~~~~~~~~li~~~~~~g--------~~-------~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g-- 196 (514)
...+..+|+.++-.+.+.= .. +.+.-..++|... .+.|.......++....-..
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 3488999998666665421 11 1122222222211 11233333333333322211
Q ss_pred CHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhccCCHHHH
Q 010229 197 RLDDTWLIINEMRSKGFQLNSF-VYGKVIGLYRDNGMWKKAVGIVEEIREMGLS----LDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A 271 (514)
+..--.+++......-+.|+-. ....+...+.+ +.+++..+-+.+....+. .-..++..++....+.++...|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1122223333333333445432 23334444443 556666665555443211 1245677888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH-HHHHH---HHHHHccC
Q 010229 272 LEVFEKMQQESIRPDIVTWN-------SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPK-IFITI---ISCLGELG 336 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l---l~~~~~~~ 336 (514)
.+.+.-+..- .|+...-. .+-+..+. .-+...-+.+|+.....++ |.. ....+ ..-+.+.|
T Consensus 318 ~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 318 KQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcC
Confidence 9888777653 33332111 12222221 1123344566666655433 221 11122 23355666
Q ss_pred C-HHHHHHHHHHHHhcCCCCcHHHHHHH----HHHHHhc---CCcchHHHHHHHHHHcCCCCC----HHHHHHHHHH--H
Q 010229 337 K-WDVIKKNFENMKDRGHGKIGAIYAIL----VDIYGQY---GRFRDPEECIAALKLEGLQPS----GSMFCILANA--Y 402 (514)
Q Consensus 337 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~---g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~--~ 402 (514)
. -+.|..+++.+.+-. +-|...-|.+ =..|.+. ..+.+-..+-+-+.+.|+.|- ...-|.|.++ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 6 788899988887642 2333333322 2333332 223333444444556677653 2334444443 4
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 010229 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYST 467 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 467 (514)
..+|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|+.++..+ +|+..++++
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 567899888776665555 5899999999999999999999999999874 456666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.28 Score=46.46 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
+...|+.+...|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999998887 4553 35899999999999999999999999875
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.92 Score=40.27 Aligned_cols=142 Identities=9% Similarity=0.039 Sum_probs=57.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010229 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..++..--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555555555555554432 2223344445555555555555555555544321111111111122333333333322
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSIIDTFGKYG 266 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 266 (514)
..+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.+++. .-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2232222221 11333334444455555555555555544443311 123333444444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.73 Score=36.71 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
...+|..+.+.+.+......++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3467888887888888888888888776 466777888888887654 3333344332 1233444556677777
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
.+.++++..++.++.. |...+..+... ++++.|.+.+.+- .++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777666665532 22223333333 5566666655541 14445555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.78 E-value=3.1 Score=44.28 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK--IFITIISCL 332 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~ 332 (514)
|.+..+.+.....+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -|.. +-..+..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 34444444555666666655554432 123455666677777777776665431 1211 124455556
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010229 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
...+++-+|-++..+.... ....+..|++...+++|.++...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6666666666665554432 12233344455555555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.21 Score=46.18 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCCC---------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010229 85 QYCCKLGDIDEAMALLAQMQAL-----GFHP---------SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
+.|.+.|++..|...|++.... +..+ -..+++.+...+.+.+++..|++..+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3677888888888888876542 1111 01233344444444555555555555544443 3334333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH
Q 010229 151 NILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
---..+++..|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3334444444455555555544444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.8 Score=40.75 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILAN 400 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~ 400 (514)
..|...+....+...++.|..+|.++.+.+ ..+++.++++++..++. |+..-|..+|+.-... -||... -...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777778888999999999999988 67788899999987764 7888999999876654 234333 345566
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 401 AYAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-+...++-+.|..+|+...+. +..+ ...|..+|.--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677889999999999966543 2223 46799999988889999888888777766
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.85 Score=36.34 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
.++..+...+........++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444555544444443 2334444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.64 E-value=1 Score=44.21 Aligned_cols=162 Identities=11% Similarity=0.135 Sum_probs=97.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHHH
Q 010229 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIG------AIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
..++....=.|+-+.+.+.+....+.+--..+ -.|...+..+.. ....+.|.+++..+..+ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34444445555666666555554442211111 122233322222 34567788888888876 4666666
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHhhhCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010229 396 CIL-ANAYAQQGLCEQTVKVLQLMEPEG--I-EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (514)
Q Consensus 396 ~~l-i~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (514)
... .+.+...|+.++|++.|+...... . +.....+--+...+...+++++|.+.|.++.+..- -...+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 543 345667889999999999765421 1 12334566777888889999999999999986422 234445444433
Q ss_pred -HHcCCCc-------chHHHHHHHHHh
Q 010229 472 -FIRAKKF-------HKVPEIYKQMES 490 (514)
Q Consensus 472 -~~~~g~~-------~~a~~~~~~m~~ 490 (514)
+...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3467777 788888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.8 Score=39.97 Aligned_cols=299 Identities=12% Similarity=0.047 Sum_probs=188.3
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHH--HHHH
Q 010229 184 TYEILLDYHV--NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG--LYRDNGMWKKAVGIVEEIREMGLSLDRQ--IYNS 257 (514)
Q Consensus 184 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 257 (514)
-|..|-.++. -.|+-..|.++-.+-.+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3445544444 357777777776654422 2335555555554 344579999999999999863 2222 2333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 010229 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYPDPK--IFITIISCLG- 333 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~- 333 (514)
|.-.--+.|..+.|..+-++.-..-.. -.-.+...+...+..|+++.|+++++.-.+.. +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 444445788999999888887665221 23567788999999999999999999876543 334432 1122222211
Q ss_pred --ccCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010229 334 --ELGKWDVIKKNFENMKDRGHGKIG-AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ 410 (514)
Q Consensus 334 --~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (514)
-..+...|...-.+..+.. |+. ..-..-...+.+.|+..++-.+++.+-+....|+ ++.. ..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--c
Confidence 1224555555555555442 222 1223445678899999999999999988755554 3332 22344454 3
Q ss_pred HHHHHHHhhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-CCCcchHHHHHHH
Q 010229 411 TVKVLQLMEPE-GIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR-AKKFHKVPEIYKQ 487 (514)
Q Consensus 411 a~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 487 (514)
+..-++...+. .++| +....-.+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333322211 1233 556677778888899999988877666654 46788888888877654 5999999999999
Q ss_pred HHhCCCCCCH
Q 010229 488 MESSGCTPDR 497 (514)
Q Consensus 488 m~~~g~~p~~ 497 (514)
..+..-.|+-
T Consensus 389 av~APrdPaW 398 (531)
T COG3898 389 AVKAPRDPAW 398 (531)
T ss_pred HhcCCCCCcc
Confidence 9877666653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.13 Score=44.77 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 010229 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA----------------GKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (514)
+..+-....++.|.+.|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444555555566666666666666666554332 22344778888888888888888888888
Q ss_pred HHHHcCCC
Q 010229 470 KAFIRAKK 477 (514)
Q Consensus 470 ~~~~~~g~ 477 (514)
.++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 88877664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.29 Score=47.31 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=106.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 85 QYCCKLGDIDEAMALLAQMQ-ALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
....-.|+++++.+..+.-. -..+ +..-.+.++.-+-+.|..+.|+++-..-. .-.....++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34456799999888776211 1111 24557888899999999999998754322 234566789999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 010229 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (514)
+.|.++.+.. .+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 9998876543 4677999999999999999999999987643 566777888899999888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010229 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 278 (514)
...|- +|....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87763 344445555668888888887664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.22 Score=44.24 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 010229 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQILQ 504 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 504 (514)
+..++..+...|+.+.+...++++...... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 344555555555555555555555544322 445555555555555555555555555443 35555555555544
Q ss_pred HH
Q 010229 505 SA 506 (514)
Q Consensus 505 ~a 506 (514)
++
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.83 Score=35.00 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=70.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCC
Q 010229 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGL 162 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~ 162 (514)
+++..|+++.|++.|.+....- +-....||.-.+++.-.|+.++|++-+++..+..-+... ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999999987653 456788999999999999999999999888874322222 233344456667888
Q ss_pred hhhHHHHHHHHHHcCC
Q 010229 163 LGLGSRLLMVMEDMGI 178 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~ 178 (514)
.+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8999988888877653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.3 Score=38.78 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCCh
Q 010229 93 IDEAMALLAQMQALGFHPSSISYASLIEALAS--VG----RTLEADAIFQEMVCFGF---NPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 163 (514)
+++.+.+++.|.+.|++.+..+|.+..-.... .. ...+|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556778888888888877766654333332 22 24568888888887531 2444555555544 33332
Q ss_pred ----hhHHHHHHHHHHcCCCcCh-HhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 164 ----GLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGR---LDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 164 ----~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
+.++.+|+.+.+.|...+. ..+.+-+-++..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4556667777666654432 222222222222211 335666677777777766666655544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.24 E-value=1 Score=34.61 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010229 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
....+......|.-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455555565565555555554322 455555555666666666666666666665555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.72 Score=41.52 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=104.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCcc
Q 010229 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR---GHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
...|+..+|-..++++.+. .+-|...+...-.+|.-.|+.+.-...++++... +.+....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567888888888888774 4556677777778888888888888888887754 22222333344455566788999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 375 DPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888887665 346666667777777888888888887665432 100111223344445666788899999888
Q ss_pred HHH
Q 010229 452 LMK 454 (514)
Q Consensus 452 ~m~ 454 (514)
.=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.96 Score=40.75 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=107.7
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCH
Q 010229 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI----TIISCLGELGKW 338 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~ 338 (514)
--.|+..+|-..++++.+. .+.|..++.--=.+|.-.|+.+.-...++++... ..+|...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 4568888888888999999999999999988753 233433332 333345688999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010229 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYAQQGLCEQTVKVL 415 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 415 (514)
++|++.-++..+.+ +.|...-.++...+...|++.++.+...+-...=-..+ ...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888876 55677777888888889999999988776432100000 011112222345568999999999
Q ss_pred HHhh
Q 010229 416 QLME 419 (514)
Q Consensus 416 ~~~~ 419 (514)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.59 Score=43.29 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=82.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010229 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (514)
-...+.+.|++..|...|+++...=. |...-+.++... ...+ -..++..+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~-~~~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKK-AEAL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHH-HHHH-------HHHHhhHHHHHHHhhhh
Confidence 34678888888888888887664210 000001111111 1111 11345666667778888
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc-chHHHHHH
Q 010229 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYK 486 (514)
Q Consensus 408 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 486 (514)
+..|++.-...+..+ ++|+-..---..+|...|+++.|+..|+++++..+. |...-+.|+..-.+.... +...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777764 556666666677788888888888888888774322 333344444443333333 34466777
Q ss_pred HHHh
Q 010229 487 QMES 490 (514)
Q Consensus 487 ~m~~ 490 (514)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.4 Score=38.80 Aligned_cols=111 Identities=8% Similarity=0.041 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
..+|.+..++..+.+ .-|......+..+....++++.|...|++.... .|| ..+|......+.-+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666665 346777777777777778888899999888875 454 4566666667777899999999888
Q ss_pred HHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 452 LMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 452 ~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+..+..+.. -.......++.|+..+ .++|++++-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 866543221 2233444455666665 4677776644
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.15 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 430 LNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
|..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.56 E-value=2.8 Score=36.21 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 010229 254 IYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
.|+.-..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 344444555555555555444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.99 Score=34.59 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=64.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH---hHHHHHHHHHhcCC
Q 010229 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE---TYEILLDYHVNAGR 197 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 197 (514)
+++..|+++.|++.|.+.+..- +.....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999999888753 5567888888888888899988888888877653222222 23333345556677
Q ss_pred HHHHHHHHHHHHHcC
Q 010229 198 LDDTWLIINEMRSKG 212 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g 212 (514)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.4 Score=36.86 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=63.1
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010229 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (514)
...|+..++...|....... +.+....-.+..+|...|+.+.|..++..+....-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555555555555433 12233444555555566666666666655433211111111111122222222222222
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHcCCCcc
Q 010229 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD--IGISPDLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~g~~~ 479 (514)
.+-...-.. +-|...-..+...+...|+.++|.+.+-.+.+ .|.. |...-..++..+.-.|..+
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 222222221 22455555566666666777777666555543 2332 3344445555555545333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=4.6 Score=38.67 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010229 129 LEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 129 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 208 (514)
.+|.++-+...+.+ +.|......+..+..-.++++.|...|++....++ -...+|........-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555554 44555555555555555556666666666655432 12334444444444556666666665554
Q ss_pred HHc
Q 010229 209 RSK 211 (514)
Q Consensus 209 ~~~ 211 (514)
.+.
T Consensus 399 lrL 401 (458)
T PRK11906 399 LQL 401 (458)
T ss_pred hcc
Confidence 443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.9 Score=37.10 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHh------hHHHHHHHHHhcC-ChHHHHHHHHHHHHc----C----CCCC----
Q 010229 88 CKLGDIDEAMALLAQMQALG--FHPSSI------SYASLIEALASVG-RTLEADAIFQEMVCF----G----FNPK---- 146 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~------~~~~li~~~~~~g-~~~~A~~~~~~~~~~----g----~~~~---- 146 (514)
.++|+++.|..++.+..... ..|+.. .|+.- ......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998876542 123321 23332 3333445 787777777665432 1 1122
Q ss_pred -hHhHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 147 -LRFYNILLRGFLKKGLLG---LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 147 -~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..++..++.+|...+..+ .|.++++.+..... -....+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234455566666655543 34444444433221 22344445555555566666666666666654
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.5 Score=37.80 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 010229 431 NVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m 453 (514)
..+.+.|...|+.+.|+.-|+..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 44555555666666665555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.19 Score=30.49 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (514)
.|..+...|.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.24 E-value=6.1 Score=38.88 Aligned_cols=388 Identities=12% Similarity=0.099 Sum_probs=185.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
+...|..+|..--...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++.+. |++.++..|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445656665555555555666666666644 34433 233344444456666677777766654 3455555555444
Q ss_pred HHHH-hcCChhhHHHHHHHHHHc-CCC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---
Q 010229 155 RGFL-KKGLLGLGSRLLMVMEDM-GIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR--- 228 (514)
Q Consensus 155 ~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--- 228 (514)
.-+. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....+|++.++. ....++....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 3333 345566666666665543 211 23445666666666666666666666666553 1112222111111
Q ss_pred -c-----cCChHHHHHHHHHHHH--------------------cCCCCCH--HHHHHH-------HHHHhccCCHHHHHH
Q 010229 229 -D-----NGMWKKAVGIVEEIRE--------------------MGLSLDR--QIYNSI-------IDTFGKYGELVEALE 273 (514)
Q Consensus 229 -~-----~g~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l-------i~~~~~~~~~~~A~~ 273 (514)
. ....+++.++-..... .+-+.+. ...+.+ -.++-......+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 0 1112222222111110 0000000 000011 111222222333333
Q ss_pred HHHHHHHC---CCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 274 VFEKMQQE---SIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 274 ~~~~m~~~---~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
.|+.-..+ .+. ++..+|..-+.--...|+++.+.-+|+...-.- ..=...|-..+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33333322 112 245667777777778888888888887765311 1111222223333334477777777766
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHhhhCC
Q 010229 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILANAYAQQGLCEQTV---KVLQLMEPEG 422 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~---~~~~~~~~~~ 422 (514)
...+.-.+..+.+--.-....-..|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++....+.
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554333333222222222334578888888888887653 43221 111223345566666666 333333322
Q ss_pred CCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010229 423 IEPNLVMLNVLINA-----FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 423 ~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
.-+..+...+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1122222222222 23357788888888888765 4456666777776665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=3.5 Score=36.00 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=54.3
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
|-...|+.-+.. .+.|++++|.+.|+.+..+. +-+ ..+...++-++-+.++++.|+...++....-..-....|.
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 334566666555 46799999999999998763 223 3445556677778999999999998887753222233444
Q ss_pred HHHHHHH
Q 010229 152 ILLRGFL 158 (514)
Q Consensus 152 ~li~~~~ 158 (514)
.-|.+.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4455544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.1 Score=39.29 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCc-CHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEG----IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI-GISP-DLVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~ 467 (514)
.|+.-+.. .+.|++..|...|....+.. ..|| .+-.|..++...|++++|..+|..+.+. +-.| -+..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655544 35677888888888877652 2233 3445888888999999999988888653 2222 2456777
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
|..+..+.|+.++|...|++..+. -|+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 888888889999999999988873 45443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.6 Score=35.97 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGF--QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
+.|++++|.+.|+.+....+ +-...+...++.++.+.+++++|+...++.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444444444444443311 01122233333344444444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.7 Score=34.35 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhhHHHHHHHHH
Q 010229 97 MALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVME 174 (514)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 174 (514)
++..+.+.+.+++|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.... -...|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345556667778888888888888888888766554443 3333444443333332221111 1223334444333
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010229 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
. .+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 4556667777778888887777664322 223334455555555555554555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.08 E-value=9.9 Score=40.73 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHH
Q 010229 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--MLNVLINA 436 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~ 436 (514)
.|.+..+.+.....+++|--.|+..-+ ..-.+.+|..+|++.+|+.+..++... -+.. +-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 344444444555666666666654321 223355666777777777777666432 1221 22566666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010229 437 FGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~ 455 (514)
+...+++-+|-++..+...
T Consensus 1009 L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHcccchhHHHHHHHHhc
Confidence 7777777777777666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.3 Score=33.54 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 87 CCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
..+.|++++|++.|+.+..+- -+-.......++.++.+.+++++|...+++.++....--..-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 345577777777777766551 011233455566666677777777777766666542212233444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.7 Score=38.33 Aligned_cols=127 Identities=12% Similarity=0.265 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHc--c----CChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCC---
Q 010229 200 DTWLIINEMRSKGFQLNSFVYGKVIGLYRD--N----GMWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGE--- 267 (514)
Q Consensus 200 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~--- 267 (514)
+...+++.|.+.|+.-+..+|.+..-.... . .....|..+|+.|.+... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666665555443222222 1 123455666666665421 1233344444332 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010229 268 -LVEALEVFEKMQQESIRPDI--VTWNSLIRWHCKAGD--VAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 268 -~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
.+.+..+|+.+.+.|...+. .....++.......+ ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455666666665544332 222222222211111 34666777777777777666555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.88 E-value=7.2 Score=38.41 Aligned_cols=382 Identities=14% Similarity=0.113 Sum_probs=221.6
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010229 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
.+...|+.+|.---...+.+.+..+++.++.. -|-. -.|.....-=.+.|..+.+.++|++-.. +++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777776655666667788888888754 3444 3566666666788999999999999886 455677788877
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--
Q 010229 189 LDYHV-NAGRLDDTWLIINEMRSK-GFQ-LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG-- 263 (514)
Q Consensus 189 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-- 263 (514)
+..+. ..|+.+...+.|+..... |.. .....|...|..-...+++.....+++++++.. ...++..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 76655 457888888888887664 221 145667888888888899999999999988742 222222222111
Q ss_pred --c-----cCCHHHHHHHHHHHHHC----CCCCCHHHHHH-----------------HH--------HHHHhcCChHHHH
Q 010229 264 --K-----YGELVEALEVFEKMQQE----SIRPDIVTWNS-----------------LI--------RWHCKAGDVAKAL 307 (514)
Q Consensus 264 --~-----~~~~~~A~~~~~~m~~~----~~~p~~~~~~~-----------------li--------~~~~~~g~~~~A~ 307 (514)
. ....+++.++-.....+ ...+....+.. +. ..+-......+..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 1 12233333332222210 00001111111 11 1111122222223
Q ss_pred HHHHHHHHC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHH
Q 010229 308 ELFTQMQEQ---GFYP----DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 308 ~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
..|+.-... .++| +..+|...+.--...|+.+.+.-.++...-.- ..-...|--.+......|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 333332221 1222 34567777777788999999988888876431 223445555566666669988888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHH
Q 010229 381 AALKLEGLQPSGSMFCILANA-YAQQGLCEQTVKVLQLMEPEGIEPNLV-MLNVLINAFGVAGKYKEAL---SVYHLMKD 455 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~ 455 (514)
....+--.+..+ ....+-.. .-..|++..|..+++...+.- |+.. .-..-+....+.|..+.+. +++....+
T Consensus 355 ~~~~~i~~k~~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 355 ARACKIHVKKTP-IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HhhhhhcCCCCc-HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 776654433222 22333333 345679999999999998763 5543 2233344556778888888 44444332
Q ss_pred CCCCcCHHHHHHHHHH-----HHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010229 456 IGISPDLVTYSTLMKA-----FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
... +..+...+.-- +.-.++.+.|..++.++.+. +.++..-+..+++
T Consensus 432 ~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 432 GKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIR 483 (577)
T ss_pred ccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHH
Confidence 211 22222222222 23367788999999999873 3444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.7 Score=37.82 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 361 AILVDIYGQYGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
..+..+.-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455555666666666666666544321 1233455666666666667666666666544
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=38.91 Aligned_cols=95 Identities=23% Similarity=0.371 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHH
Q 010229 254 IYNSIIDTFGKYGELVEALEVFEKMQQES----IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYP-DPKIFIT 327 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ 327 (514)
.|+.-++ +.+.|++.+|...|....+.. ..|| .+-.|..++...|+++.|...|..+.+.- -.| -+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555554 345566777777777776652 2222 33446777777777777777777766531 111 2345555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc
Q 010229 328 IISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
+..+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666677777777777776665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.63 E-value=2.9 Score=33.01 Aligned_cols=80 Identities=9% Similarity=-0.123 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
.-.....+.|++++|.+.|+.+...-. +-.....-.++.+|.+.+++++|...+++..+..+......|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334455678999999999999987521 223456677899999999999999999999997765445667666666554
Q ss_pred cC
Q 010229 195 AG 196 (514)
Q Consensus 195 ~g 196 (514)
-.
T Consensus 95 ~~ 96 (142)
T PF13512_consen 95 YE 96 (142)
T ss_pred HH
Confidence 33
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.4 Score=38.83 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCH-----
Q 010229 362 ILVDIYGQYGRFRDPEECIAALKLEGL-----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----GIEPNL----- 427 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~----- 427 (514)
.+..++.-.+.++++.+.|+...+... .....++..|.+.|.+..|+++|.-+..+..+. ++..=.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344445555556666666665543211 112235666667777777777776655544331 211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKD----IGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.....|..++...|+..+|.+.-++..+ .|-.+- ......+.+.|...|+.+.|..-|++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1223455667788888888888777643 343221 2345567788889999999888777654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.2 Score=37.05 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
..+..+...|++.|+.++|++.|.++.+....+. ...+..+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888877654433 33566777777778888877777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=4.5 Score=34.92 Aligned_cols=200 Identities=19% Similarity=0.160 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010229 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS- 330 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 330 (514)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555554431 112233344444444555555555555555555432222 111111111
Q ss_pred HHHccCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010229 331 CLGELGKWDVIKKNFENMKDRGH--GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533211 0122222233333444555556665555555432211234455555555555666
Q ss_pred HHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 409 EQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+.+...+...... .|+ ...+..+...+...+..+++...+++...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666665553 222 33333344444445556666666665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.2 Score=39.78 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcCHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLVTYSTL 468 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~~l 468 (514)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566667777777777777777776653 4466677777777777777777777777664 35777777776666
Q ss_pred HHH
Q 010229 469 MKA 471 (514)
Q Consensus 469 ~~~ 471 (514)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.33 E-value=4 Score=39.25 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=100.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010229 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
.-+..+...-+++-++..+ +.||-.+.-.++ +--......++++++++..+.+-. .+. +....+..
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s~~~~~~ 243 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLG-------KSQFLQHH 243 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhc-------hhhhhhcc
Confidence 3355566666666666665 345443322222 222344578888888887765411 111 00000010
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-..++....++..+-..+-..+..++.+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111122222222333333345666777889999999999999865311 1344677899999999999999999988654
Q ss_pred CCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 456 IGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 456 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
...+.. ...|+..+-.+...++.-. -+...++|+.|...
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs----~e~a~rRGls~ae~ 363 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFS----PEAASRRGLSPAEM 363 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccC----chhhhhcCCChhHH
Confidence 322212 3355554444443443211 12234567777654
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.1 Score=34.59 Aligned_cols=223 Identities=18% Similarity=0.132 Sum_probs=157.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 010229 265 YGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ-GFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 265 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666665554221 13567777888889999999999988887752 23445566777777788888899999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 343 KNFENMKDRGHGKIGAIYAILVD-IYGQYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
..+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754333 222222333 78899999999999999865321 1233344444445677889999999999988
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 420 PEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 420 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
... .. ....+..+...+...++++.|...+......... ....+..+...+...+..+++...+++..+
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 33 4677888889999999999999999998874322 244555555555577778899888888876
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.20 E-value=11 Score=38.25 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=7.2
Q ss_pred cchHHHHHHHHHHc
Q 010229 373 FRDPEECIAALKLE 386 (514)
Q Consensus 373 ~~~A~~~~~~~~~~ 386 (514)
+..|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 34555555555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.18 E-value=6.5 Score=35.71 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=30.5
Q ss_pred hHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 219 VYGKVIGLYRDNGMWK---KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 219 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
++..++.++...+..+ +|..+++.+... .+-...++-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555555443 333344444332 1222334444455555566666666666666654
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.26 Score=28.32 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQM 103 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m 103 (514)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.7 Score=36.15 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010229 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--SFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556666677777777777777777666543332 23455566666667777766666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.47 E-value=4.9 Score=32.46 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 010229 403 AQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~ 420 (514)
...|++.+|..+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.41 E-value=12 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHH
Q 010229 493 CTPDRKARQILQSALV 508 (514)
Q Consensus 493 ~~p~~~~~~~l~~a~~ 508 (514)
..+|......|+++.+
T Consensus 449 ~~~De~~l~~lL~g~~ 464 (468)
T PF10300_consen 449 EDPDERALRHLLKGAC 464 (468)
T ss_pred CCccHHHHHHHHHHHH
Confidence 4566666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=5.2 Score=32.58 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=52.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHH--HHHHHccCCh
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-VYGKV--IGLYRDNGMW 233 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l--l~~~~~~g~~ 233 (514)
++.+..++|+..|..+.+.|...-++ ..-.......+.|+...|...|++.-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455666666666666554321111 11112223445566666666666655443332221 11111 1123344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010229 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
++.....+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55444444443333222233333444444455555555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=5.6 Score=32.43 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCCH
Q 010229 333 GELGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCIL--ANAYAQQGLC 408 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 408 (514)
.+.++.++|+.-|..+.+.|...-+.. .........+.|+...|...|.++-.....|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555666666666665543322221 1122333455666777777777665543333221 00111 1234567778
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010229 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+......+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7777777776655534444455667777778888888888888876543333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.46 Score=27.28 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 430 LNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.19 E-value=7.3 Score=31.88 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 010229 293 LIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~ 312 (514)
++..+...|++-+|+++.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33344444444444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.7 Score=31.35 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.43 E-value=4 Score=29.82 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010229 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.. +.+....|..+++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 3334444444555566666666666666666666666666655532 222222455555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.5 Score=26.51 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.03 E-value=25 Score=36.15 Aligned_cols=221 Identities=14% Similarity=0.119 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChH-
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-------TLEADAIFQEMVCFGFNPKLR- 148 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~- 148 (514)
...| .+|-.|.|+|++++|.++.++.... .......+...+..+....+ -++...-|++..+.....|+.
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3456 5888889999999999999555433 24455677788888876533 234555566555443222332
Q ss_pred --hHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCcChHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCC
Q 010229 149 --FYNILLRGFLKKGLLGLGS-RLLMVMEDMGICRNQETYEILLDYHVNAG---------RLDDTWLIINEMRSKGFQLN 216 (514)
Q Consensus 149 --~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~g~~~~ 216 (514)
+|..+ .++.-.+.-. .+...+ +...|-.|.-.-.... .+++-.+.+.+.-+..+.+
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~ti-------ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTI-------EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SH-------HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHH----hcCCccccchHHHhCcH-------HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 22222 2221101000 111111 1112222211111110 1122222222222222333
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIR 295 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~ 295 (514)
....-.....+.-.|+++.|++.+-. ......+.+.+...+.-|.-.+-.+... ..+.... -.|....+..||.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 11122234556678999999998877 2223445666655555443322222111 2222110 0111256778888
Q ss_pred HHHhc---CChHHHHHHHHHHHHC
Q 010229 296 WHCKA---GDVAKALELFTQMQEQ 316 (514)
Q Consensus 296 ~~~~~---g~~~~A~~~~~~m~~~ 316 (514)
.|.+. .+..+|+++|--+...
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHc
Confidence 88764 4677888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.013 Score=47.12 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010229 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
+..+.+.+.......+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444445555555555444333344445555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.95 E-value=4.5 Score=39.76 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010229 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... +..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666665554432 455566666666666666666666655443 334444555555555444
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010229 343 KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.+-....+.|. .|...-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44444433331 12222334445555555555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.89 E-value=5.2 Score=35.99 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.++++.++..=.+-|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555444444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.1 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+|..+..+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.49 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=11.6
Q ss_pred CCHhhHHHHHHHHHhcCChHHHH
Q 010229 110 PSSISYASLIEALASVGRTLEAD 132 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~ 132 (514)
-|...|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445555555555555555543
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=89.47 E-value=22 Score=36.23 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQ 102 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~ 102 (514)
+.-|+ .|..+.-.|.++.|.++++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45566 56666666778877777744
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.39 Score=27.16 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 010229 426 NLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~ 447 (514)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.14 E-value=30 Score=35.84 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
..+.+.+.|++++|...|-+-... +.| ..+|.-+....+...-...++.+.+.|+ .+...-+.|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc
Confidence 344556889999999988775532 122 2456666777777777788888888885 556667789999999999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
.+.-.+..+... .|.. ..-....+..+.+.+-.++|..+-..... .......+ +-..+++++|++.+..
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 887777666554 2221 11234455666666666666554443322 22333322 2345666777666655
Q ss_pred H
Q 010229 243 I 243 (514)
Q Consensus 243 ~ 243 (514)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.68 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666655544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.03 E-value=11 Score=33.69 Aligned_cols=138 Identities=9% Similarity=0.103 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHHHh-cC-ChhhHHHHHHHHHHc-CCCcChHhHHHHHHHHHhcCCHHH
Q 010229 125 VGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFLK-KG-LLGLGSRLLMVMEDM-GICRNQETYEILLDYHVNAGRLDD 200 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 200 (514)
+....+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+....+..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345666666663221 1233455666666665554 21 223333444444322 344667777778888888888888
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHHHHccCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 010229 201 TWLIINEMRSK-GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE-----IREMGLSLDRQIYNSIIDTF 262 (514)
Q Consensus 201 A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 262 (514)
-+++++..... +..-|...|..+|+...+.|+..-..++.++ +.+.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88877776655 5556777888888888888887766666654 23445666655555554444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.90 E-value=11 Score=30.48 Aligned_cols=69 Identities=25% Similarity=0.190 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYA-SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+.++.+++..+++.+... .|...... .-...+...|++.+|..+|+++...+ |.......|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4567777777777777665 44433322 22345567777888888887776542 4444445555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.31 E-value=23 Score=33.37 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP---SGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
...++..+...+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777788888888888888888877643211 223334445566677888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.81 E-value=12 Score=29.72 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 010229 403 AQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~ 420 (514)
...|++.+|..+|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344455555555554444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.63 E-value=17 Score=31.05 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
||--|.+-+...|+.++|..+|+-.+.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444444455555555555555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.54 E-value=11 Score=37.18 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=111.8
Q ss_pred ccCcchHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 010229 74 EFSGNSYNKSIQYC-----CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148 (514)
Q Consensus 74 ~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 148 (514)
+.++.+|..++..+ .-.|+++.|-.++..+.+ ...+.++..+-+.|-.++|+++- ..||..
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r 643 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS-------TDPDQR 643 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC-------CChhhh
Confidence 44566655544433 345888888776655542 23456677777788777776653 123221
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010229 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
.....+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+.
T Consensus 644 -----Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t 703 (794)
T KOG0276|consen 644 -----FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYT 703 (794)
T ss_pred -----hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhh
Confidence 23455789999998877654 3667899999999999999999999987654 456677777
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
..|+-+....+-....+.|. .|... -+|...|+++++.+++.+-.
T Consensus 704 ~~g~~~~l~~la~~~~~~g~-~N~AF-----~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGK-NNLAF-----LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hcCChhHHHHHHHHHHhhcc-cchHH-----HHHHHcCCHHHHHHHHHhcC
Confidence 78887766666666666653 33322 24566799999998886653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.52 E-value=12 Score=33.77 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
+.++++.++..=...|+-||..+++.+++.+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555554444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.8 Score=24.08 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555566666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.8 Score=25.48 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777777777777777764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.20 E-value=13 Score=31.18 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=85.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH--
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISY--ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-- 152 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-- 152 (514)
+..|..++...- .+.. +.....+++...+-...-..+ ..+...+...+++++|..-++..... |....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345777777754 4444 666666777665311112222 33456788899999999999887753 33333333
Q ss_pred ---HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010229 153 ---LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 153 ---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
|.+.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|......+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44566778999999999988776322 22223445678889999999999999988875
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.98 E-value=6.3 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++.+..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666777777777777777777777777777776663
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.98 E-value=22 Score=31.82 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=38.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+...+.|...|.+.+|.++.+.....+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456667777777777777776654 4566666677777777777666666666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.43 E-value=43 Score=34.51 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHP---SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
--|+.+.+.+.+++|++..+..... .| -...+...|..+...|++++|-...-.|. ..+..-|...+..+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhc
Confidence 3577888999999999988765533 33 23467788889999999999999888887 355666777777776
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
..+..... +.-++......+...|..++..+..
T Consensus 435 e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 66654433 2333332222456678888877776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.7 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQA 105 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (514)
.+++.+...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777778888888888888777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.08 E-value=12 Score=31.32 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=61.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc
Q 010229 120 EALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (514)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (514)
+-+.++|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.-..+..+.++ ........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 456678888888888888876531111 23455555677788888888888877777553 1122223334577788
Q ss_pred CCHHHHHHHHHHHHHc
Q 010229 196 GRLDDTWLIINEMRSK 211 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~ 211 (514)
..+++|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888876
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.24 E-value=6.2 Score=35.92 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
.+-|.++|++++|++.|....... +-|.+++..-..+|.+..++..|..-....+..+ ..-+..|+--+.+--..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788899999999998876652 3388888888888888888887777666665432 11122333333333334555
Q ss_pred hhHHHHHHHHHH
Q 010229 164 GLGSRLLMVMED 175 (514)
Q Consensus 164 ~~A~~~~~~~~~ 175 (514)
.+|.+-++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=8.1 Score=32.87 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRG 156 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~ 156 (514)
.+..++.+.+.+.+++|+...++-.+.. +.|..+-..+++.+|-.|++++|..-++..-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556778888899999999888766653 5566677888899999999999987777665532 23445667766664
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.84 E-value=8 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666667777777777777887777777777777777643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.68 E-value=28 Score=30.79 Aligned_cols=50 Identities=6% Similarity=0.059 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCChHHHHHHHHHHH
Q 010229 195 AGRLDDTWLIINEMRSKGFQLNSF---VYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
..++++|+.-|.+..+....-... +.-.++....+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 346667777776666543222222 22334555566666666666555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.67 E-value=11 Score=31.86 Aligned_cols=74 Identities=14% Similarity=-0.008 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCcChHhHHHHHHHHHhcCCHHHHH
Q 010229 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
-+.|++.|-.+...+.--++...-.|...|. ..+.+++.+++-+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3678888888877665556666666666555 56778888888777654 22567888888999998888888875
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.07 E-value=13 Score=31.36 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=17.4
Q ss_pred cCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHH
Q 010229 300 AGDVAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDV 340 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~ 340 (514)
..+.++++.++....+. +-.+|+..+.+|...+.+.++++.
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444444444444321 123344444444444444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.60 E-value=58 Score=33.62 Aligned_cols=416 Identities=11% Similarity=0.043 Sum_probs=207.4
Q ss_pred CccCcchHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHHcC----
Q 010229 73 EEFSGNSYNKSIQYCC-KLGDIDEAMALLAQMQALGFHPSSI-----SYASLIEALASVGRTLEADAIFQEMVCFG---- 142 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~g---- 142 (514)
++....++-.+...+. ...++++|...+++.....-+++.. ....++..+.+.+... |...+++..+.-
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 3445566677777776 6789999999999875543233322 2234456666666555 888888876531
Q ss_pred CCCChHhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCcChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC---
Q 010229 143 FNPKLRFYNIL-LRGFLKKGLLGLGSRLLMVMEDMG---ICRNQETYEILLDYHV--NAGRLDDTWLIINEMRSKGF--- 213 (514)
Q Consensus 143 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~--- 213 (514)
..+-...+..+ +..+...++...|.+.++.+.... ..|....+-.++.+.. +.+..+++.+..+++.....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 11222333333 333334479999999998887642 2244445555555443 45667778777777743221
Q ss_pred ------CCChhhHHHHHHHHH--ccCChHHHHHHHHHHHH-------cC----------CC-------------CCH---
Q 010229 214 ------QLNSFVYGKVIGLYR--DNGMWKKAVGIVEEIRE-------MG----------LS-------------LDR--- 252 (514)
Q Consensus 214 ------~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~-------~~----------~~-------------~~~--- 252 (514)
.|-..+|..+++.++ ..|+++.+.+.++++.+ .. ++ +..
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~w 293 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSW 293 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEee
Confidence 234556777776554 56776677666555432 10 00 000
Q ss_pred ------HHHHHHHHH--HhccCCHHHHHHHH-------HHHH-HCCCCCC--------HHHHHHHHH---------HHHh
Q 010229 253 ------QIYNSIIDT--FGKYGELVEALEVF-------EKMQ-QESIRPD--------IVTWNSLIR---------WHCK 299 (514)
Q Consensus 253 ------~~~~~li~~--~~~~~~~~~A~~~~-------~~m~-~~~~~p~--------~~~~~~li~---------~~~~ 299 (514)
....-++.+ .+..+..+.|.+++ ++.. .....+. ...|...+. ..+-
T Consensus 294 l~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 294 LPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFI 373 (608)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 011111221 23334443454444 4444 1111111 122322222 2245
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-----HHHHHHHHH--HHHccCCHHHHHHHHH--------HHHhcCCCCcHHHHHHH
Q 010229 300 AGDVAKALELFTQMQEQGF-YPD-----PKIFITIIS--CLGELGKWDVIKKNFE--------NMKDRGHGKIGAIYAIL 363 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~-~p~-----~~~~~~ll~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 363 (514)
.+++..|...+++|.+..- .|+ ...+...+. .+...|+.+.|...|. .....+...+..++..+
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 6889999999998875321 111 122222232 3446789999999997 44444444444433321
Q ss_pred --HHHHHhcC--Ccch--HHHHHHHHHHc---CCCCCHHHHHHHH-HHHHhcC--CHHHHHHHHHHhh-----hCCC-CC
Q 010229 364 --VDIYGQYG--RFRD--PEECIAALKLE---GLQPSGSMFCILA-NAYAQQG--LCEQTVKVLQLME-----PEGI-EP 425 (514)
Q Consensus 364 --i~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~li-~~~~~~g--~~~~a~~~~~~~~-----~~~~-~p 425 (514)
+-.+...+ ..++ +.++++.+... ....+..++..++ .++.... ...++...+.+.. ..+. .-
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 11222222 2223 66677665432 1112233344333 3332221 1223333332221 1110 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-c--CHHHHHH-----HHHHHHcCCCcchHHHHHHHHHh
Q 010229 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-P--DLVTYST-----LMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p--~~~~~~~-----l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
-..+++.|...+. .|+..+..+..........+ | ....|.. +...+...|+.++|.+...+...
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1122333333333 67777766555543221111 2 3345533 33446778999999888777653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.55 E-value=1.5 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=13.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010229 433 LINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.19 E-value=56 Score=33.18 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHH--HHH-HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHccC-
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEIL--LDY-HVNAGRLDDTWLIINEMRS-------KGFQLNSFVYGKVIGLYRDNG- 231 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 231 (514)
...|.+.++...+.|- ......... ..+ +....+.+.|+..|....+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888888777653 111111111 222 4466788999999888876 44 3345556666666643
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 010229 232 ----MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC----KAGD 302 (514)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~ 302 (514)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|......|.. ..+-.+..+|. -..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 5677888888888776 3444443333333333 34677888888888877742 22222222221 2236
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010229 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+...+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 788888888888877 3332222333333444 66666666665555544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.75 E-value=26 Score=33.82 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHhcCCcchHHHHHHHHHH---cCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCCCH---
Q 010229 366 IYGQYGRFRDPEECIAALKL---EGLQPS-----GSMFCILANAYAQQGLCEQTVKVLQLMEP-------EGIEPNL--- 427 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~--- 427 (514)
.+.-.|++.+|.+++...-- .|...+ -..||.+.-...+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456777777777654321 121111 11234444334455556555555555442 3444422
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010229 428 --------VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 428 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 344677889999999999988754 44588889999998874
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.39 E-value=8.6 Score=32.73 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--ISPDLVTYSTLMKA 471 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~ 471 (514)
|.+.-++.+.+.+...+++...++-.+.. +-|..+-..++..++-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888899999999988777763 4466677788899999999999998888775532 23345577777654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.10 E-value=29 Score=29.13 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-----NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
...+...+++++|...++..... |....+ --|.+.....|.+|+|+..++...+.+.. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 34567788888888888877653 222222 23456677889999999888876654322 222344457788
Q ss_pred cCCCcchHHHHHHHHHhCC
Q 010229 474 RAKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g 492 (514)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988865
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.74 E-value=20 Score=30.13 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 010229 297 HCKAGDVAKALELFTQMQEQGFYPD-----PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (514)
+.++|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.--.+.++.+. ........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 45667777777777666653 1221 12233334455566666666666655555542 12222223344566666
Q ss_pred CcchHHHHHHHHHHc
Q 010229 372 RFRDPEECIAALKLE 386 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~ 386 (514)
.+++|++-|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.73 E-value=1.8 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666665544
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=41 Score=30.57 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHccCC
Q 010229 321 DPKIFITIISCLGELGK 337 (514)
Q Consensus 321 ~~~~~~~ll~~~~~~~~ 337 (514)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444455555544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=7.4 Score=37.18 Aligned_cols=124 Identities=8% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010229 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
.--...|+.-.|.+-+...+++. +.++.........+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 33345566666555444444332 222222233333455667777777776655432 2234456666777777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|..+-+.|....++ +......-....-..|-++++.-.|++....
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 777777777665443 3333333233334456677777777776554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.09 E-value=5.5 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.08 E-value=6.1 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355566666667777777777666655
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 1e-14
Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 4/197 (2%)
Query: 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI 258
+ + R +++ + + LS +Q +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 259 IDTFGKYGELVEA---LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315
+L A L V +Q+ + +N+++ + G + + + +++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 316 QGFYPDPKIFITIISCLGELGK-WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374
G PD + + C+G + I++ E M G A+L+ + +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 375 DPEECIAALKLEGLQPS 391
+ L P
Sbjct: 254 AVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 5e-12
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 4/153 (2%)
Query: 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407
+ A L+ + L
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 408 CEQTVKVLQL---MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVT 464
+L + + L M N ++ + G +KE + V ++KD G++PDL++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 465 YSTLMKAFIRAKKFHKVPEIY-KQMESSGCTPD 496
Y+ ++ R + E +QM G
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 35/351 (9%), Positives = 95/351 (27%), Gaps = 21/351 (5%)
Query: 65 SPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124
+ E + +Q +D A Q + +
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139
Query: 125 VGRTLEADAIFQ---EMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN 181
+ A + L YN ++ G+ ++G +L +++D G+ +
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199
Query: 182 QETYEILLDYHVNAGRLDDT-WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240
+Y L + T + +M +G +L + ++ + K +
Sbjct: 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
Query: 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300
+ ++ V ++ ++ + + +
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL-----FEKQLHMELAS 314
Query: 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360
++E T ++ + + L + +++ ++ + ++Y
Sbjct: 315 RVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA--LRETKNRLEREVYEGRFSLY 372
Query: 361 AILVDIYGQYGRFRDPEEC--IAALKLEGLQPSGSMFCILANAYAQQGLCE 409
L + D E + L+ L G F LA + +
Sbjct: 373 PFLCLL--------DEREVVRMLLQVLQALPAQGESFTTLARELSARTFSR 415
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 3e-10
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 3/112 (2%)
Query: 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448
P L + + + L + + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 449 V---YHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497
+ +H + L Y+ +M + R F ++ + ++ +G TPD
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 3e-10
Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 4/231 (1%)
Query: 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330
A + + +Q P L++ + Q + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 331 CLGELGKWD---VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387
C + + + + +Y ++ + + G F++ + +K G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 388 LQPSGSMFCILANAYAQQGLCEQTV-KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446
L P + +Q T+ + L+ M EG++ + VL++ A K
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497
V P V S L++ P+++ +++ C ++
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 6e-10
Identities = 60/411 (14%), Positives = 132/411 (32%), Gaps = 91/411 (22%)
Query: 134 IFQEMVCFGFNPKLRFYNI--LLRGFLKKG----LLGLGS------RLLMVMEDMGICRN 181
+F++ F ++ + + L K ++ RL + +
Sbjct: 24 VFED----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQ 75
Query: 182 QETYEILLDYHVNAGRLDDTWL---IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK-AV 237
+E + ++ R++ +L I E R ++ + LY DN ++ K V
Sbjct: 76 EEMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNV 131
Query: 238 GIVEEIREM--GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295
++ ++ L R N +ID G+ AL+V + + + W +L
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK 355
+ + +L Q+ + + I + + + +K + +
Sbjct: 192 CNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAE---LRRL--LKSKPYEN 245
Query: 356 IGAIYAILV--DIYGQYGRFRDPEECIAALKLEGLQPSGSMFC-ILA---NAYAQQGLCE 409
+LV ++ + + A L C IL L
Sbjct: 246 -----CLLVLLNVQ-------NA-KAWNAFNLS---------CKILLTTRFKQVTDFLSA 283
Query: 410 QTVKVLQLME-PEGIEPNLVMLNVLINAFGVAGKY--KEALSVYHLMKDIGISPDLVTYS 466
T + L + P+ V ++L+ + +E L+ +P +
Sbjct: 284 ATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLT---------TNPRRL--- 330
Query: 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL---EQRR 514
+++ IR + +K + K I++S+L VL E R+
Sbjct: 331 SIIAESIR--DGLATWDNWKHVNCD------KLTTIIESSLNVLEPAEYRK 373
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 81/564 (14%), Positives = 163/564 (28%), Gaps = 176/564 (31%)
Query: 11 PIHGTSPLSVFFSTHSSSREHAGHKLNSSCHS----------GMRRCVKEGYAYS-LGNK 59
++ + + F+ ++ SR KL + G+ K A +
Sbjct: 118 RLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 60 NLSIKSPDGSNSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119
+ K I + L + + +L +Q L + ++ S
Sbjct: 175 KVQCKMDFK---------------I-FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179
+ N KLR ++I + L RLL
Sbjct: 218 D--------------------HSSNIKLRIHSI------QAEL----RRLLK-------- 239
Query: 180 RNQETYEI-LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238
+ YE LL L + N F L+ K++ R +
Sbjct: 240 --SKPYENCLLV-------LLNVQ---NAKAWNAFNLSC----KILLTTRFKQVTDFLSA 283
Query: 239 -----IVEEIREMGLSLD--RQIYNSIIDTFGKYGEL-VEALEVFE---KMQQESIRPDI 287
I + M L+ D + + +D + +L E L + ESIR +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 VTWNSLIRW-HCKAGDVAKALELFTQMQE----QGFYPDPKIF-----ITII-------- 329
TW+ W H + +E + E + + +F I I
Sbjct: 342 ATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 330 -------SCLGELGKWDVIKKNFENMKDRGHG----------KIGAIYAILVDIYGQYGR 372
+ +L K+ +++K + A++ +VD Y +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPK 457
Query: 373 FRDPEECIAALKLEGLQPSGSMFCILANAY----AQQGLCEQTVKVLQLMEPEGIEPNLV 428
D ++ I + + + + +++ L +
Sbjct: 458 TFDSDDLIP------PYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFL--------DFR 501
Query: 429 MLNVLINAFGVAGKYKEALSVYHLMKDIG-----ISPDLVTYSTLMKAFIRAKKFHKVPE 483
L I A + + S+ + ++ + I + Y L+ A + F +P+
Sbjct: 502 FLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DF--LPK 554
Query: 484 IYKQMESSGCTPDRKARQILQSAL 507
I + + S T +L+ AL
Sbjct: 555 IEENLICSKYT------DLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 8e-06
Identities = 41/344 (11%), Positives = 99/344 (28%), Gaps = 91/344 (26%)
Query: 94 DEAMALLAQM----------QALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCFG 142
DE +LL + + L +P +S +I G T + ++ + C
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDN---WKHVNCDK 354
Query: 143 FNPKLR-FYNIL----LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVN 194
+ N+L R + L + I ++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDR--------LSVFPPSAHI--PTILLSLIWFDVIK--- 401
Query: 195 AGRLDDTWLIINEMRSKGF---QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD 251
D +++N++ Q + +Y + + ++ +
Sbjct: 402 ----SDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLE---------LKVKLEN-----E 442
Query: 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVT--WNSLIRWHCKAGDVAKALEL 309
++ SI+D Y + + + + P + + S I H K + + + L
Sbjct: 443 YALHRSIVD---HY-------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 310 FTQMQEQGFYPD-----PKIFITIISCLGELGKWDVIK--KNFENMKDRGHGKIGAIYAI 362
F + + D KI + + ++ K ++ K +
Sbjct: 493 FRMV-----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 363 LVDIYGQYGR--FRDPEECIAALKLEGLQPSGSMFCILANAYAQ 404
++D + + + L + + I A+ Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIAL--MAEDEA---IFEEAHKQ 586
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 27/215 (12%), Positives = 78/215 (36%), Gaps = 17/215 (7%)
Query: 255 YNSIIDTFGKYGELVEALEVFEKM--QQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312
+ ++ G+ + + K+ Q I+ + + + + +A E + +
Sbjct: 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225
Query: 313 -MQEQGFYPDPKIFITIISCLGELGKWD-VIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370
+ + + L +WD V+K N+ + ++Y + ++
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285
Query: 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ----TVKVLQLMEPEGIEPN 426
R E+ ++++ GL+ S + A+ + T K+L++ +P N
Sbjct: 286 DELRRAEDYLSSI--NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-DPY----N 338
Query: 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
L + + + + +G+ + + + + P+
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISN--DLVDRHPE 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 65/404 (16%), Positives = 118/404 (29%), Gaps = 75/404 (18%)
Query: 89 KLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKL 147
L + + QA G P + + AS ++ + +
Sbjct: 340 ALETVQRLLP--VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ---------- 387
Query: 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL--DDTWLII 205
GL ++ + G + ET + LL A L D I
Sbjct: 388 --------------AHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 433
Query: 206 NEMRSKGFQ-LNSF-----VYGKVIGL-------YRDNGMWKKAVGIVEE-----IREMG 247
+ G Q L + V + GL + K+A+ V++ + G
Sbjct: 434 S--HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491
Query: 248 LSLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAK 305
L+ D+ S I + L V Q + PD +V S V +
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQR 549
Query: 306 ALELFTQMQEQGFYPDPKIFITII-SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILV 364
L + Q G PD + I L + ++ AI + +
Sbjct: 550 LLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI- 606
Query: 365 DIYGQYGRFRDPEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ-----LM 418
G + + L + GL P+ A A +Q ++ +Q L
Sbjct: 607 ---GGKQALETVQRLLPVLCQAHGLTPA------QVVAIASHDGGKQALETVQRLLPVLC 657
Query: 419 EPEGIEPNLVM-LNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461
+ G+ P+ V+ + + L V + G++ +
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTQE 699
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.52 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.68 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.41 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.09 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.44 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.88 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.55 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.32 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.09 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.89 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.29 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.3 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.78 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.69 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.12 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.72 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.07 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.75 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.76 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.82 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.18 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=325.72 Aligned_cols=427 Identities=10% Similarity=0.003 Sum_probs=309.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
+.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 4467889999999999999999999999999865 578899999999999999999999999988653 688999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHH-Hc--------------CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010229 153 LLRGFLKKGLLGLGSRLLMVME-DM--------------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 217 (514)
++.+|.+.|++++|.++|+++. .. +..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 9999999999999999999532 21 22346889999999999999999999999999876432 22
Q ss_pred hhHHHH--------------------------------------HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010229 218 FVYGKV--------------------------------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (514)
Q Consensus 218 ~~~~~l--------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (514)
..+..+ +..|.+.|++++|.++|+++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 222222 33445567777777777777654 46777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010229 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+|.+.|++++|.++|+++.+.+. .+..+|+.++.++.+.|++++|..+++++.+. .+.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHH
Confidence 777777777777777777765432 25556677777777777777777777777653 2335666667777777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766643 34566677777777777777777777777665532 355667777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010229 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 543 345666777777777777777777777776554 44555 5667777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 010229 494 TPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 494 ~p~~~~~~~l~~a~~~~~~ 512 (514)
+.+..++..+..++...|+
T Consensus 547 p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCC
Confidence 2356666666666665543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=314.11 Aligned_cols=421 Identities=12% Similarity=0.026 Sum_probs=366.4
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-c----------
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC-F---------- 141 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~---------- 141 (514)
..|+..+|..++..|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. .
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3567789999999999999999999999998654 67899999999999999999999999995322 1
Q ss_pred ----CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHH------------------------------
Q 010229 142 ----GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI------------------------------ 187 (514)
Q Consensus 142 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------------------------ 187 (514)
|.+++..+|+.++.+|.+.|++++|.++|+++.+.++ .+...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2234688999999999999999999999999988653 23333333
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010229 188 --------LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (514)
Q Consensus 188 --------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (514)
++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 355666889999999999999876 5799999999999999999999999999999876 44788899999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010229 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
..|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 4578899999999999999999999999998753 336889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010229 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 45788999999999999999999999999998753 478899999999999999999999999998
Q ss_pred hC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010229 420 PE----GIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 420 ~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+. .+..+|..+..+|.+.|++++|.+.++++.+ +
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLA--I 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c
Confidence 75 56777 78999999999999999999999999988653 3889999999999999999999999999998 5
Q ss_pred CCC-HHHHHHHHHH
Q 010229 494 TPD-RKARQILQSA 506 (514)
Q Consensus 494 ~p~-~~~~~~l~~a 506 (514)
.|+ ...+..+.+.
T Consensus 580 ~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 580 SPNEIMASDLLKRA 593 (597)
T ss_dssp CTTCHHHHHHHHHT
T ss_pred CCCChHHHHHHHHH
Confidence 664 4455555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-28 Score=234.19 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=286.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4556778899999999999887764 4456677777788888999999999998888764 5677889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
+++|.+.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999887543 34567888889999999999999999888876322 445666777788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010229 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
+.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 88764 4467788888888888888888888888887653 2356677778888888888888888888877642 2246
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (514)
.++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 677777778888888888888888877764 3456667777777777777777777777777653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010229 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.... +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 77777777777777776642 345666777777777777777777777777664322 4555666655555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=260.62 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=121.2
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010229 96 AMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 96 A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
+..+.+++.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444555555444333 235556666666666666666666666666666666666666666554432110
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010229 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01122455666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
||.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=260.67 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=159.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCChH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---------TLEADAIFQEMVCFGFNPKLR 148 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~g~~~~~~ 148 (514)
..++.+|++|++.|++++|+++|++|.+.|++||..+|+++|.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45889999999999999999999999999999999999999999997765 567888888888888888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010229 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010229 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
+.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888877777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-27 Score=229.61 Aligned_cols=382 Identities=14% Similarity=0.058 Sum_probs=330.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010229 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 3566778999999999999998864 45667788888899999999999999999887654 678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010229 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 2256679999999999999999999999999875 34567788889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH
Q 010229 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (514)
+.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 98763 2357899999999999999999999999999864 3357788889999999999999999999998875 4568
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (514)
.++..+...|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8899999999999999999999999998653 357789999999999999999999999998874 66889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010229 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+ ...+..+...+...+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999998753 33678999999999999999999999999997 5664 556666666555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-25 Score=217.11 Aligned_cols=410 Identities=10% Similarity=-0.007 Sum_probs=323.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999874 799999999999999999999999999999875 5667899999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------------
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------------------------- 211 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 211 (514)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998764 34444444444444333323222222111100
Q ss_pred ----------CC---------CCChhhHHHHHHHHHc---cCChHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 010229 212 ----------GF---------QLNSFVYGKVIGLYRD---NGMWKKAVGIVEEIRE-----MGL--------SLDRQIYN 256 (514)
Q Consensus 212 ----------g~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 256 (514)
.. +.+...+......+.. .|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 0113334444444444 8999999999999887 311 22456788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010229 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
.+...+...|++++|...|+++.+.. |+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999988764 347888889999999999999999999998753 336678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010229 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998875 44677888999999999999999999999987643 356778889999999999999999999
Q ss_pred HhhhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010229 417 LMEPEGI-EPN----LVMLNVLINAFGV---AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 417 ~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
++.+... .++ ...|..+..++.. .|++++|.+.++++.+... .+..++..+..++.+.|++++|.+.+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8876421 111 3488899999999 9999999999999987643 36778899999999999999999999999
Q ss_pred HhCCCCCCHH
Q 010229 489 ESSGCTPDRK 498 (514)
Q Consensus 489 ~~~g~~p~~~ 498 (514)
.+ +.|+..
T Consensus 476 ~~--~~~~~~ 483 (514)
T 2gw1_A 476 AD--LARTME 483 (514)
T ss_dssp HH--HCSSHH
T ss_pred HH--hccccH
Confidence 98 566654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-23 Score=199.48 Aligned_cols=314 Identities=11% Similarity=0.050 Sum_probs=184.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45677788888888888888888888887653 4567778888888888888888888888887765 455677788888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ---ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
+|.+.|++++|.+.|+++.+... .+. ..+..++..+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 88888888888888888877543 233 5555554441111 11122233445555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010229 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (514)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666665555442 3345555556666666666666666666555431 22455566666666666666666666666
Q ss_pred HHHCCCCCC-HHHHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCcchH
Q 010229 313 MQEQGFYPD-PKIFITI------------ISCLGELGKWDVIKKNFENMKDRGHGKI---GAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 313 m~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 376 (514)
+.+. .|+ ...+..+ ...+.+.|++++|...++.+.+...... ...+..+..++.+.|++++|
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5543 222 2222222 4445555555555555555554321100 22445555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
...++++.... +.+...|..+..+|...|++++|...++++.+
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555554432 12445555555555555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-22 Score=196.73 Aligned_cols=361 Identities=13% Similarity=0.052 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010229 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
.+...+.+..... +.+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 3455666677777777777777777777766643 4456666677777777777777777777766
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 010229 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD 251 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 251 (514)
+.++ .+...|..+...|.+.|++++|.+.|+++.+.... +. ..+..+...+..
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------
Confidence 6543 34556666666666677777777776666654211 12 333333332111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 331 (514)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112334556888999999999999998753 3478889999999999999999999999998753 3468899999999
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHH------------HHHHHhcCCcchHHHHHHHHHHcCCCCC----HHHH
Q 010229 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAIL------------VDIYGQYGRFRDPEECIAALKLEGLQPS----GSMF 395 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 395 (514)
+...|++++|...++.+.+.. +.+...+..+ ...+.+.|++++|...|+++...... + ...|
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 999999999999999998765 3345555544 88899999999999999999886432 2 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-----
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK----- 470 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~----- 470 (514)
..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.|+++.+.... +...+..+..
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHh
Confidence 888999999999999999999988763 447899999999999999999999999999885433 5666666663
Q ss_pred -------HHHcCC-----CcchHHHHHHHH
Q 010229 471 -------AFIRAK-----KFHKVPEIYKQM 488 (514)
Q Consensus 471 -------~~~~~g-----~~~~a~~~~~~m 488 (514)
.|...| +.+++.+.++++
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 344445 556778888863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-22 Score=202.89 Aligned_cols=402 Identities=11% Similarity=0.055 Sum_probs=309.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34677889999999999999999999999875 5678899999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCChhh----------
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQLNSFV---------- 219 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~---------- 219 (514)
++...|++++|.+.|+.+.. . |+ .....+..+...+....|...++++... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974422 1 22 2222344555556667788888777442 11122111
Q ss_pred --------------------HHHHHHHHHc--------cCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhc
Q 010229 220 --------------------YGKVIGLYRD--------NGMWKKAVGIVEEIREMGLSLD-------RQIYNSIIDTFGK 264 (514)
Q Consensus 220 --------------------~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 264 (514)
...+...+.. .|++++|..+++++.+.. +.+ ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 1112222111 247889999999988764 223 2356677778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010229 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (514)
Q Consensus 265 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 344 (514)
.|++++|.+.|++..+. .|+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999875 4567888889999999999999999999998753 33678888999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--
Q 010229 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-- 422 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 422 (514)
++++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998875 44567888899999999999999999999988753 356688889999999999999999999886542
Q ss_pred ---CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 423 ---IEPNLVMLNVLINAFGVA----------GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 423 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.......+..+..++... |++++|...|+++.+.... +...+..+..+|.+.|++++|.+.+++..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111223345556777777 9999999999999876433 67889999999999999999999999998
Q ss_pred hC
Q 010229 490 SS 491 (514)
Q Consensus 490 ~~ 491 (514)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 84
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-22 Score=198.02 Aligned_cols=375 Identities=9% Similarity=-0.037 Sum_probs=299.2
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
|+...|..+...|.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 578899999999999999999999999999875 5567899999999999999999999999999876 34545555555
Q ss_pred HHHHhcCChhhHHHHHHHHHH-----------------------------------cCC---------CcChHhHHHHHH
Q 010229 155 RGFLKKGLLGLGSRLLMVMED-----------------------------------MGI---------CRNQETYEILLD 190 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~-----------------------------------~~~---------~~~~~~~~~li~ 190 (514)
..+.+......+.+.+..+.. ... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 544443322222222211110 000 111444444555
Q ss_pred HHHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010229 191 YHVN---AGRLDDTWLIINEMRS-----KGF--------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 191 ~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
.+.. .|++++|...|+++.. ... +.+..++..+...+...|++++|...++++.+... +...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHH
Confidence 4554 8999999999999988 311 22356777888999999999999999999998753 3888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..++++.+... .+...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 33677889999999999999999999999998643 356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHh---cC
Q 010229 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQ---QG 406 (514)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 406 (514)
.|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++++...... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998864 446778899999999999999999999998765322 11 3478889999999 99
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
++++|.+.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998764 4567889999999999999999999999998854
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-20 Score=184.51 Aligned_cols=385 Identities=11% Similarity=0.106 Sum_probs=296.3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.++ .+...|..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999875 56788999999999999999999999999998764 567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCHH------------
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG------LSLDRQ------------ 253 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------ 253 (514)
+...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 32 2221 1222334445555677888888775431 112211
Q ss_pred ------------------HHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHh
Q 010229 254 ------------------IYNSIIDTFGKY--------GELVEALEVFEKMQQESIRPD--------IVTWNSLIRWHCK 299 (514)
Q Consensus 254 ------------------~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~--------~~~~~~li~~~~~ 299 (514)
....+...+... |++++|..+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 222333333222 47899999999998753 33 2356677788899
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010229 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
.|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999985 4668888889999999999999999999999875 45688899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010229 380 IAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
++++..... .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+....
T Consensus 333 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 999988753 356788899999999999999999999998864 456778999999999999999999999998754211
Q ss_pred -----cCHHHHHHHHHHHHcC----------CCcchHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhhh
Q 010229 460 -----PDLVTYSTLMKAFIRA----------KKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQ 512 (514)
Q Consensus 460 -----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~~~ 512 (514)
.....+.....++.+. |++++|...++++.+. .| +...+..+...+...|+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 1122344556677777 9999999999999984 44 45677777777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-19 Score=166.00 Aligned_cols=333 Identities=11% Similarity=0.047 Sum_probs=204.4
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010229 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
+..+..+...+.+.|++++|...|+++.+..+ .+...|..+...+...|++++|...++++.+... -+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 45566666777777777777777777766543 3456666777777777777777777777666532 245566666666
Q ss_pred HHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010229 227 YRDNGMWKKAVGIVEEIREMGLS--LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 77777777777777776654210 12333333311000 001112234555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
+|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655432 2244555555556666666666666666665543 3345556666666666666666666666665
Q ss_pred HcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 010229 385 LEGLQPSGSMFC------------ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 385 ~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 448 (514)
+... .+...+. .+...+.+.|++++|.+.++++.+.. +.+. ..+..+..++...|++++|.+
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5432 1222222 23556778888888888888887753 2223 234557788888899999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010229 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
.++++.+... .+..+|..+..++...|++++|.+.++++.+ +.|+ ...+..+.++....+
T Consensus 294 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHH
Confidence 9988877532 2677888888888889999999999998887 4565 455566666555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-19 Score=166.95 Aligned_cols=332 Identities=13% Similarity=0.056 Sum_probs=224.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
|...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+... .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 46678889999999999999999999999875 56788999999999999999999999999988653 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKV------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999876320 133444433 344555555556655555555543 33455555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010229 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
.+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ------ 230 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH------
Confidence 55555555555555555555555432 2244555555555555555555555555555421 111111111100
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 010229 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTV 412 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 412 (514)
+. .......+...+.+.|++++|...++++...... +. ..+..+...+...|++++|.
T Consensus 231 -----------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 231 -----------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp -----------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 00 0111223356677888888888888888776432 22 23445677888889999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
+.+++..+.. +.+..+|..+..++...|++++|.+.|+++.+.... +...+..+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 9998888763 447788888899999999999999999998875432 4555666555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-17 Score=163.72 Aligned_cols=354 Identities=12% Similarity=0.044 Sum_probs=297.1
Q ss_pred CcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCh
Q 010229 76 SGNSYNKSIQYCCK----LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKL 147 (514)
Q Consensus 76 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~ 147 (514)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45566667777777 899999999999998865 67788888889988 899999999999998865 56
Q ss_pred HhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhh
Q 010229 148 RFYNILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 148 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777788888888 789999999999998864 56678888888887 789999999999998875 6778
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010229 220 YGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWN 291 (514)
Q Consensus 220 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (514)
+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 899999999999998875 66778888888876 789999999999988764 566777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 010229 292 SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAI 362 (514)
Q Consensus 292 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (514)
.+...|.. .+++++|+.+|++..+.| +...+..+...+... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78778877 899999999999998764 556677777777776 89999999999998876 4567777
Q ss_pred HHHHHHhcC---CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 010229 363 LVDIYGQYG---RFRDPEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (514)
Q Consensus 363 li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 435 (514)
+...|...| +.++|.++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7889999999998764 56778888888888 789999999999998865 5778888999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCC
Q 010229 436 AFGV----AGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~m~~~~~~ 459 (514)
.|.. .+++++|...|++..+.+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988 89999999999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-17 Score=159.99 Aligned_cols=365 Identities=12% Similarity=0.012 Sum_probs=310.1
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhhHH
Q 010229 96 AMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLGS 167 (514)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 167 (514)
+++.+++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566665543 77788888888887 899999999999998864 56788889999998 89999999
Q ss_pred HHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHHHHH
Q 010229 168 RLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGI 239 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 239 (514)
+.|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 56777888888888 889999999999998876 56778888888887 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFT 311 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 311 (514)
|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 77888889998987 899999999999998874 67788888888886 889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----CCcchHHHHHHH
Q 010229 312 QMQEQGFYPDPKIFITIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY-----GRFRDPEECIAA 382 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 382 (514)
+..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|... ++.++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 55667777777777 899999999999998775 466777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010229 383 LKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKD 455 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 455 (514)
..+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98865 4467777888887766 8899999999998864 67888999999998 8999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHc----CCCcchHHHHHHHHHhCCC
Q 010229 456 IGISPDLVTYSTLMKAFIR----AKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 493 (514)
.| +...+..|...|.. .++.++|.+.|++..+.|.
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 75 56788889999988 8999999999999998663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-17 Score=165.67 Aligned_cols=408 Identities=9% Similarity=0.054 Sum_probs=300.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|..+|++++... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5568988998 478999999999999999863 5577889999999999999999999999999864 68888877775
Q ss_pred HH-HhcCChhhHHH----HHHHHHHc-CCCc-ChHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCChhh
Q 010229 156 GF-LKKGLLGLGSR----LLMVMEDM-GICR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 156 ~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.. ...|+.+.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++............
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688887765 77766543 4433 46788888877655 6889999999999987311111233
Q ss_pred HHHHHHHH-------------HccCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhcc----
Q 010229 220 YGKVIGLY-------------RDNGMWKKAVGIVEEIR------EMG---LSLD--------RQIYNSIIDTFGKY---- 265 (514)
Q Consensus 220 ~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 265 (514)
|....... ...+++..|..++++.. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33322211 12355677777776632 221 2333 24566655443322
Q ss_pred CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 010229 266 GEL----VEALEVFEKMQQESIRPDIVTWNSLIRWHCK-------AGDVA-------KALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 266 ~~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
++. +.+..+|++..... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 47778898887652 3467888888888775 79987 89999999986322335788888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcC
Q 010229 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQG 406 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g 406 (514)
++..+.+.|++++|..+|+++++.........|..++..+.+.|++++|.++|++..+.... +...|...+.. +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcC
Confidence 99999999999999999999998642211358889999999999999999999999876322 22333322222 34689
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcC--HHHHHHHHHHHHcCCCcchHHH
Q 010229 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPD--LVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
+.++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 34678999999999999999999999999988643 232 4578888888889999999999
Q ss_pred HHHHHHh
Q 010229 484 IYKQMES 490 (514)
Q Consensus 484 ~~~~m~~ 490 (514)
+.+++.+
T Consensus 485 ~~~r~~~ 491 (530)
T 2ooe_A 485 VEKRRFT 491 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-18 Score=160.94 Aligned_cols=292 Identities=11% Similarity=-0.068 Sum_probs=220.4
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667778888889999999999999988774 4556677778888899999999999999998864 4567788888
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010229 154 LRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 154 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 89999999 89999999999887653 45677888888889999999999999888876433 45666677888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChH
Q 010229 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES--------IRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.+...|..+...+.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888764 4567778888888888888888888888776531 1233567777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhcCC
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY-GQYGR 372 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 372 (514)
+|+..+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 8888888777643 2245666677777777777777777777776654 34555666666655 33443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-18 Score=161.65 Aligned_cols=291 Identities=8% Similarity=0.006 Sum_probs=169.9
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010229 181 NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260 (514)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 260 (514)
+...+..+...+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 334444555555555555555555555554421 133344444455555555555555555555442 234445555555
Q ss_pred HHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010229 261 TFGKYG-ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 261 ~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|+..++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 555555 5666666665555432 12344555556666666666666666666555321 12344444555566666666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 010229 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG--------LQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
+|...++.+.+.. +.+..++..+...+...|++++|...+++..... ...+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 3345566666666666666666666666665431 122345677777778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HcCCCc
Q 010229 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF-IRAKKF 478 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~ 478 (514)
.+.+++..+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 88888777653 345677778888888888888888888887764322 566677777766 345543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=164.26 Aligned_cols=289 Identities=11% Similarity=-0.038 Sum_probs=195.2
Q ss_pred CCHHHHHH-HHHHHHHcCC---CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010229 196 GRLDDTWL-IINEMRSKGF---QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 196 g~~~~A~~-~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
|++++|.+ .|++...... ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 4444332211 1123445555566666666666666666666543 33555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---------------HHHHHHHccC
Q 010229 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI---------------TIISCLGELG 336 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---------------~ll~~~~~~~ 336 (514)
.+.|+++.+.. +.+..++..+...+...|++++|+..++++.+.... +...+. ..+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666665542 224556666666666666666666666666653211 111111 0233334788
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010229 337 KWDVIKKNFENMKDRGHGK-IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVL 415 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 415 (514)
++++|...++.+.+..... +..++..+...|.+.|++++|...++++.... +.+...|..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999999988765332 57888899999999999999999999988764 345778999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc----------CHHHHHHHHHHHHcCCCcchHHHHH
Q 010229 416 QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP----------DLVTYSTLMKAFIRAKKFHKVPEIY 485 (514)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (514)
+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9988763 4567889999999999999999999999987642221 1678999999999999999999887
Q ss_pred HHHH
Q 010229 486 KQME 489 (514)
Q Consensus 486 ~~m~ 489 (514)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 7443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-16 Score=156.97 Aligned_cols=399 Identities=10% Similarity=0.068 Sum_probs=287.0
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 010229 100 LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (514)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (514)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|+++.|.++|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444443 557889999998 478999999999999999864 5677889999999999999999999999998854
Q ss_pred cChHhHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHc---------cCChHHHHHHHHHH
Q 010229 180 RNQETYEILLDYH-VNAGRLDDTWL----IINEMRSK-GFQL-NSFVYGKVIGLYRD---------NGMWKKAVGIVEEI 243 (514)
Q Consensus 180 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~ 243 (514)
|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888887644 35677776665 77766543 5444 45677777766554 68899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHH
Q 010229 244 REMGLSLDRQIYNSIIDTF-------------GKYGELVEALEVFEKMQ------QES---IRPD--------IVTWNSL 293 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~--------~~~~~~l 293 (514)
++.........|....... .+.++++.|..++..+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123444332211 13456777887776632 221 2444 2456655
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhc
Q 010229 294 IRWHCKA----GDV----AKALELFTQMQEQGFYPDPKIFITIISCLGE-------LGKWD-------VIKKNFENMKDR 351 (514)
Q Consensus 294 i~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 351 (514)
+...... ++. +++..+|++.... .+-++..|..+...+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 4778899998875 23467778877777765 78887 899999999873
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 010229 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML 430 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 430 (514)
-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 3456788999999999999999999999999998532 13 3578888888889999999999999998762 2233333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCC-CCCC--HHHHHHHHHH
Q 010229 431 NVLINA-FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPD--RKARQILQSA 506 (514)
Q Consensus 431 ~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~a 506 (514)
...+.. +...|++++|..+|++..+... .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 333322 3468999999999999987532 267889999999999999999999999999863 3343 3355444443
Q ss_pred H
Q 010229 507 L 507 (514)
Q Consensus 507 ~ 507 (514)
.
T Consensus 473 e 473 (530)
T 2ooe_A 473 E 473 (530)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=161.52 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=169.8
Q ss_pred HhcCCHHHHHH-HHHHHHHCCC-CC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 88 CKLGDIDEAMA-LLAQMQALGF-HP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 88 ~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...|++++|++ .|++.....- .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 7776544321 11 24567778888888888888888888888765 45677888888888888888
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHH
Q 010229 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK---------------VIGLYR 228 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------ll~~~~ 228 (514)
++|.+.|+++.+... .+..++..+...+...|++++|.+.++++...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888877653 46778888888888888888888888888776432 2222211 122222
Q ss_pred ccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010229 229 DNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL 307 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 307 (514)
..|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|++++|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666665543111 35556666666666666666666666655432 223455566666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC----------cHHHHHHHHHHHHhcCCcchHH
Q 010229 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK----------IGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 308 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~ 377 (514)
..++++.+.. +.+...+..+...+.+.|++++|...++.+.+..... ...+|..+..+|...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 6666655432 2234555555555566666666666555554432111 1344555555555555555555
Q ss_pred HHHH
Q 010229 378 ECIA 381 (514)
Q Consensus 378 ~~~~ 381 (514)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 4443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-18 Score=160.58 Aligned_cols=267 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355678889999999999999999999998875 5578899999999999999999999999998875 45688899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcChH----------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHH
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQE----------TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKV 223 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 223 (514)
.+|.+.|++++|.+.|+++.+... .+.. .+..+...+...|++++|.+.|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999887532 1122 2233466777788888888888887776432 156677777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (514)
...+...|++++|.+.++++.+.. +.+..+|+.+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 777777788888888887777653 4456777777777777777777777777776642 22466777777777777777
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 304 AKALELFTQMQEQGFY-----------PDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++|...|+++.+.... .+...+..+..++...|+.+.+.....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777776643100 013445555555566666655554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-17 Score=152.73 Aligned_cols=266 Identities=9% Similarity=0.014 Sum_probs=172.5
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355667788899999999999999999998874 4577889999999999999999999999998875 55778889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL--------------LD-YHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
..+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+.... +...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 999999999999999999987643 223333333 11 245556666666666666554322 4555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010229 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...|..+...+.+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5556666666666666666666665543 3345555556666666666666666666555432 1244555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 300 AGDVAKALELFTQMQEQGFYP-----------DPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
.|++++|.+.++++.+..... +...+..+..++.+.|+.++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666665554421110 23444445555555555555554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=160.25 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010229 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3355666666666552 1235556666666666666666666432 344455566666666666666666
Q ss_pred HHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 010229 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (514)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55444432 2344555556666666666666555553 244456666666666666666666666544
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010229 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
..|..++..+.+.|++++|.+.++++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 145556666666666666666666551 555666666666666666666433322 12233334445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 010229 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ 369 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 369 (514)
+..|.+.|.++++..+++...... +.....|+.+.-+|++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 555666666666666666655544 4445555555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-18 Score=159.36 Aligned_cols=232 Identities=9% Similarity=-0.048 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 010229 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (514)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 229 (514)
+..+...+.+.|++++|.+.|+++.+..+ .+..+|..+...+...|++++|+..|+++.+... .+..++..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 44444455555555555555555544332 2344455555555555555555555555544321 134444445555555
Q ss_pred cCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 010229 230 NGMWKKAVGIVEEIREMGLS---------LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCK 299 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~ 299 (514)
.|++++|...++++.+.... .....+..+...+.+.|++++|.+.|+++.+.... ++..+|..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554443100 01122333445555556666666666655544211 135555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010229 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666555432 2234455555555555555555555555555443 22344555555555555555555555
Q ss_pred HHHHHH
Q 010229 380 IAALKL 385 (514)
Q Consensus 380 ~~~~~~ 385 (514)
|+++.+
T Consensus 304 ~~~al~ 309 (365)
T 4eqf_A 304 FLTALS 309 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-19 Score=178.49 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=127.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQA---LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
-..+||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||+.|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 010229 153 LLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------SFVYGKVIG 225 (514)
Q Consensus 153 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~ 225 (514)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765544 344444444 3344444 455556667
Q ss_pred HHHccC
Q 010229 226 LYRDNG 231 (514)
Q Consensus 226 ~~~~~g 231 (514)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-16 Score=147.33 Aligned_cols=280 Identities=10% Similarity=-0.032 Sum_probs=165.5
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 34456777888888999999999999988765 45677888888889999999999999998887643 46778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCH
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGEL 268 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~ 268 (514)
.+...|++++|.+.++++...... +...+..+...+ ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888899999999988888876322 222222221000 00000111101 14444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010229 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544432 1234455555555555555555555555554432 223445555555555555555555555555
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------SGSMFCILANAYAQQGLCEQTVKVLQL 417 (514)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 417 (514)
.+.. +.+..++..+...|.+.|++++|.+.++++....... +...|..+...+...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5443 2344555555666666666666666666555443221 345666666677777777777666654
Q ss_pred h
Q 010229 418 M 418 (514)
Q Consensus 418 ~ 418 (514)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=153.51 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=135.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458999999999999999999999763 47779999999999999999999988877764 466788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 9999999999998885 277789999999999999999999999976 489999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|+.+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999988 278999999999999999999976665433 2444455799999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCC------cHHHHHHHHHHHHhcCCcchHHHHH
Q 010229 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD-RGHGK------IGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
.. +-....|+-+..+|++- +++...+.++.... .++++ +...|..++..|.+.++++.|....
T Consensus 236 le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 44567777777777665 34443333332222 22222 3557889999999999999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-16 Score=151.88 Aligned_cols=391 Identities=10% Similarity=-0.036 Sum_probs=242.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL--------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-----G 142 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g 142 (514)
....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987542 12334678999999999999999999999887652 1
Q ss_pred -C-CCChHhHHHHHHHHHhc--CChhhHHHHHHHHHHcCCCcChHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCC
Q 010229 143 -F-NPKLRFYNILLRGFLKK--GLLGLGSRLLMVMEDMGICRNQETYEILLDY---HVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 143 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
. .....++..+..++.+. +++++|.+.|++..+..+ .+...+..+... +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 0 12245566665566554 468899999999887643 344455555444 34567778888888888776322
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010229 216 NSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291 (514)
Q Consensus 216 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (514)
+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45555555544443 467788888888887764 4567788888888999999999999998887653 22455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 010229 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (514)
.+...|...+.... ... ... ........+..+.|...++...+.. +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555532211110 000 000 0000111223567788888877764 344566778888899999
Q ss_pred CcchHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010229 372 RFRDPEECIAALKLEGLQPSGS--MFCILAN-AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
++++|.+.|++..+....+... .+..+.. .....|++++|+..|++..+. .|+...... ..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHH
Confidence 9999999999888765433221 1222222 234678999999999988875 455433222 2234455
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCC-CCCCHHH
Q 010229 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPDRKA 499 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~ 499 (514)
++++..+... .+..+|..+..+|...|++++|.+.|++..+.| ..|+..+
T Consensus 418 ~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 418 IAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 6666655433 367789999999999999999999999998753 3455543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=149.43 Aligned_cols=370 Identities=11% Similarity=-0.051 Sum_probs=242.5
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC----
Q 010229 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF--------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG---- 177 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---- 177 (514)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999987652 112345688999999999999999999998876531
Q ss_pred -C-C-cChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHccCChHHHHHHHHHHHHcCCC
Q 010229 178 -I-C-RNQETYEILLDYHVN--AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL---YRDNGMWKKAVGIVEEIREMGLS 249 (514)
Q Consensus 178 -~-~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 249 (514)
. . ....++..+..++.. .+++++|++.|++..+.... ++..+..+..+ +...++.++|++.+++.++.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1 124556666555554 45789999999999876422 44455544444 445678888999999888764 4
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010229 250 LDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (514)
Q Consensus 250 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 325 (514)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|+..+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 466666666655544 456788999998877653 3467788889999999999999999999988753 2245556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010229 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405 (514)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (514)
..+..+|...+... .... ...........+..++|...+++..+.+. .+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 55555543221110 0000 00001111122345778888988877653 3445688889999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHH
Q 010229 406 GLCEQTVKVLQLMEPEGIEPNL--VMLNVLIN-AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (514)
|++++|.+.|++..+....+.. ..+..+.. .....|++++|+..|++..+. .|+.......+ ..+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 9999999999999876433222 12333333 345679999999999999885 34433332222 2344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010229 483 EIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 483 ~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+++++..+. -+.+..++..+...+...|+
T Consensus 417 ~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 417 KIAKMRLSK-NGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp HHHHHHHHH-CC-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 555555542 13355677778777776665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=142.80 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=119.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQLNS--FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666655544322 2221 2333445566666666665554433 12344555555555556666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010229 270 EALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
+|++.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666655544323 333444444555566666666665554 234455555555555555555555555555
Q ss_pred HhcCCCCcHH--HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010229 349 KDRGHGKIGA--IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 349 ~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
.+.... +.. .....+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|.+.+++..+.. +-+
T Consensus 157 ~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 157 QDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 544311 110 01112222333345555555555554442 2344445555555555555555555555544432 224
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 010229 427 LVMLNVLINAFGVAGKYKE-ALSVYHLMKD 455 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 455 (514)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4445555555555555443 3344444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=174.76 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=133.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVC---FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
..||+++|.+|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 010229 189 LDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD------RQIYNSIIDT 261 (514)
Q Consensus 189 i~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~ 261 (514)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999998765543 333333333 2334443 4556667777
Q ss_pred HhccC---------CHHHHHHHHHH
Q 010229 262 FGKYG---------ELVEALEVFEK 277 (514)
Q Consensus 262 ~~~~~---------~~~~A~~~~~~ 277 (514)
|.+.+ ..++-.+.|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 87665 25666666655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=142.32 Aligned_cols=251 Identities=10% Similarity=-0.018 Sum_probs=134.9
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
....|++..|+..++......+.........+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666555543322111123344455666666666666654433 1233445555555666666666666
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 237 VGIVEEIREMGL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666655442 22444555555666666666666666655 23555566666666666666666666666655
Q ss_pred CCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 010229 316 QGFYPDPKIF---ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (514)
Q Consensus 316 ~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 392 (514)
.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++..... -+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence 32 332111 112223333456666666666666552 44555666666666666666666666666655432 245
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 010229 393 SMFCILANAYAQQGLCEQ-TVKVLQLMEPE 421 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 421 (514)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 555566666666665543 44555555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-14 Score=144.75 Aligned_cols=319 Identities=11% Similarity=0.118 Sum_probs=193.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
--...+++|...|.+.+|+++++++...+ +..+....+.++.+..+. +.....+...+.... + ..-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 33456677777777888888887777432 112334555566655555 444444444444321 1 2335566
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
+...|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 6677777777777777420 112222222 2556677777776654 2456677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.+.|.+. .|...|..++.++.+.|++++|++.+...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7777553 266667777777777777777777777666543 33333334666777777666533332 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 010229 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLN 431 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 431 (514)
.++...+..+.+.|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 223445556777777777777777777764 257777777777777777777776652 446666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 432 VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666666666655443 22245556666666677777777777666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-13 Score=141.85 Aligned_cols=336 Identities=12% Similarity=0.114 Sum_probs=248.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGF--HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
...++.|...|.+.+|++++++..-.+- .-+....+.++....+. +..+..+...+.... ...-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4588899999999999999999984421 12345566677666666 456666655554421 1344777888
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
..|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999988631 2222333332 6788899988888652 57888899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010229 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 98653 377788889999999999999999998877653 33333335888899988888544332 2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010229 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.++...+..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345666777888999999999999999885 36888999999999999999999876 345788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-|...|++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 88888888888888766542 3466677788889999999999999998776543 2244566666666655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=142.96 Aligned_cols=379 Identities=17% Similarity=0.108 Sum_probs=249.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999998876 444555666677778888 8999999998853 5566777777565
Q ss_pred hcC-----ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 010229 159 KKG-----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD---DTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 159 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 230 (514)
..+ +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 77899999999998764 337777777777765543 4455555555444 456677777888887
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCh
Q 010229 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDV 303 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~ 303 (514)
+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.|. ++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 755555544333332212223337888888999999 99999999999998874 4555556677777554 689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----Ccch
Q 010229 304 AKALELFTQMQEQGFYPDPKIFITIISC-L--GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-----RFRD 375 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 375 (514)
++|+.+|++.. .| ++..+..+... + ...++.++|...|++..+.+ +...+..+..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 44555556555 3 56889999999999999877 5677777888887 45 8999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 010229 376 PEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEAL 447 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 447 (514)
|.++|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999877 3 355677777777766 349999999999998876 33445566666664 46899999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.+|+...+.|.. +.......+......++.++|.++.++..+
T Consensus 379 ~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999887753 322222222222334455667777666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-15 Score=127.50 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45567777888888888888888888887764 4567778888888888888888888888888765 455677777777
Q ss_pred HHHhc-----------CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 156 GFLKK-----------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 156 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
++.+. |++++|...|++..+..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 777777777777766543 345566666667777777777777777766665 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.++...|++++|+..+++..+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66667777777777777666653 3355666666666666666666666665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=129.77 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI--RPD----IVTW 290 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~ 290 (514)
...+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666655 4556666666666666666666666666554311 111 3555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010229 291 NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
..+...+...|++++|+..|++..+. .|+. ..+.+.|++++|...++.+.+.. +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~------ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEG------ 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHH------
Confidence 56666666666666666666666552 2332 22333444555555555554432 22333444444
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010229 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (514)
..+...|++++|.+.++++.+.. +.+...|..+..++...|++++|.+.|
T Consensus 147 -----------------------------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 147 -----------------------------KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -----------------------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444555555555555444432 223444555555555555555555555
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+++.+.... +...|..+..++...|++++|.+.+++..+
T Consensus 197 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555443211 344455555555555555555555555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=128.12 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=154.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHhHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (514)
..|..+...+.+.|++++|+..|+++.+.. .+...+..+...+...|++++|.+.++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456777888888888888888888888776 6777888888888888888888888888776431 111 46777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.+...+.+.|++++|.+.|++..+.. |+. ..+...|++++|...++++..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 77788888888888888888777643 332 334555667777777777766521 13455666666777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...|..+...+.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777776653 3356666667777777777777777777666542 2245666666666777777777777766
Q ss_pred HHHH
Q 010229 312 QMQE 315 (514)
Q Consensus 312 ~m~~ 315 (514)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=125.36 Aligned_cols=199 Identities=16% Similarity=0.085 Sum_probs=122.3
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010229 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+ .+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4566677777888888888888888888887764 45667777788888888888888888888777553 356677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010229 189 LDYHVNA-----------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 189 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+... |++++|+..|++..+.... +...+..+..++...|++++|+..|++.++.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 6666666666666655322 44555566666666666666666666666654 45566666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666655542 124455555666666666666666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-13 Score=120.17 Aligned_cols=222 Identities=11% Similarity=-0.017 Sum_probs=146.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
+.++..+...+.+.|++++|++.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445666777777777888888888777763 355667777777777 777777777777777754 5666777
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 153 LLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 153 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7777777 777777777777777653 55666666677766 677777777777766654 445555566
Q ss_pred HHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 225 GLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRW 296 (514)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 296 (514)
..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66665 666666666666666543 44555566666666 666666666666666543 24455555556
Q ss_pred HHh----cCChHHHHHHHHHHHHC
Q 010229 297 HCK----AGDVAKALELFTQMQEQ 316 (514)
Q Consensus 297 ~~~----~g~~~~A~~~~~~m~~~ 316 (514)
|.+ .+++++|.+.|++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 665 66666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-12 Score=117.67 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFI 326 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 326 (514)
+...+..+...|...|++++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344455555555555556666555555552 234455555555555 566666666666655543 445555
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010229 327 TIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 327 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 666666666666665543 45556666666666 666677777776666654 34555666
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010229 399 ANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 399 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777777653 45666777777777 788888888888777654 2556667777
Q ss_pred HHHc----CCCcchHHHHHHHHHhCC
Q 010229 471 AFIR----AKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 471 ~~~~----~g~~~~a~~~~~~m~~~g 492 (514)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 778888888888877743
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-14 Score=136.72 Aligned_cols=344 Identities=10% Similarity=0.021 Sum_probs=236.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 334455566677778888 8999999998863 5566777777555
Q ss_pred hcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010229 194 NAG-----RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW---KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 194 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
..+ ++++|+..|++..+.|. ...+..|...|...+.. .++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78999999999998764 34677777777765543 34555666655554 345566777777777
Q ss_pred CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 010229 266 GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG---DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL--- 335 (514)
Q Consensus 266 ~~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 335 (514)
+. .+++..+++..... +...+..+...|.+.| +.++|+++|++..+.|. ++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 74 44555555554433 3337888888999999 99999999999998874 4555556666777654
Q ss_pred -CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-H--HhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 010229 336 -GKWDVIKKNFENMKDRGHGKIGAIYAILVDI-Y--GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG----- 406 (514)
Q Consensus 336 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 406 (514)
++.++|...|+... . .+...+..+... | ...+++++|.++|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 78999999999988 3 356667777776 4 56899999999999999876 5667777777776 55
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCCc
Q 010229 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----AKKF 478 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 478 (514)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 44 66777888887776 3499999999999988764 3445666666664 4578
Q ss_pred chHHHHHHHHHhCCC
Q 010229 479 HKVPEIYKQMESSGC 493 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~ 493 (514)
++|..++++..+.|.
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 899999999888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=128.80 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=192.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
...|+.+...+.+.|++++|++.|+++.+.. +-+...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999999875 4567889999999999997 999999999999876 567889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~ 234 (514)
++.+.|++++|+..|+++.+... .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998765 57889999999999999999999999999987544 67888888888888 56657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 010229 235 KA-----VGIVEEIREMGLSLDRQIYNSIIDTFGKYG--ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG------ 301 (514)
Q Consensus 235 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 301 (514)
+| ++.+++.++.. +.+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47888888764 446778888888888877 588888888887 32 3346677788888887764
Q ss_pred ---ChHHHHHHHHHH-HH
Q 010229 302 ---DVAKALELFTQM-QE 315 (514)
Q Consensus 302 ---~~~~A~~~~~~m-~~ 315 (514)
..++|+++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 257888888888 54
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-13 Score=121.41 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=134.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667778888888889999998888887764 4467778888888888888888888888887764 3456677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777778888877777776622223 345666666667777777777777766665432 234555555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655542 234455555555555556666666655555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-13 Score=117.78 Aligned_cols=200 Identities=8% Similarity=-0.108 Sum_probs=111.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456666667777777777777777766653 3345666666667777777777777777666543 3345566666666
Q ss_pred HHhc-CChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 010229 157 FLKK-GLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 157 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 234 (514)
+... |++++|.+.++++.+.+..| +...|..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666665521112 234555555555566666666666655554421 13444444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555443211234444444444444555555555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=124.53 Aligned_cols=234 Identities=13% Similarity=0.029 Sum_probs=154.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~ 156 (514)
.+......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++++.+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677788888888888888887764 34455778888888888888888888888877331121 2237777788
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+...|++++|.+.|++..+... .+...|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777543 355677777777788888888888777776652 22455555555234444577777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHH
Q 010229 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---LVEALEVFEKMQQES-IRPD------IVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A 306 (514)
.+.++++.+.. +.+...+..+...+...++ +++|...+++..+.. ..|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777653 3345566666666666665 556666666654321 0122 13555566666667777777
Q ss_pred HHHHHHHHHC
Q 010229 307 LELFTQMQEQ 316 (514)
Q Consensus 307 ~~~~~~m~~~ 316 (514)
.+.+++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777766653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-14 Score=124.03 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=131.8
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
.......|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHH
Confidence 44556678888889999999999999999998764 4567888888999999999999999999988764 456778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCC
Confidence 88888888888888888888877643 4566777777777788888888888777766532 245566666666666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
+++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766666543 334555666666666666666666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-13 Score=118.88 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=158.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567777888889999999999999988764 45678888888999999999999999998887653 467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988887733333 45667777788888888888888888887764 3457777788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010229 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888877653 245666777777788888888888888887764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-13 Score=115.84 Aligned_cols=202 Identities=10% Similarity=-0.076 Sum_probs=144.8
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45667777888888888888888888887754 44567778888888888888888888888776543 45667777778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010229 191 YHVNA-GRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 191 ~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888776322232 4566667777777788888887777777653 33566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++|.+.+++..+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766543213556666666667777777777777777664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-14 Score=128.43 Aligned_cols=247 Identities=13% Similarity=-0.027 Sum_probs=183.2
Q ss_pred hcCCHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010229 89 KLGDIDEAMALLAQMQALGF---HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34889999999999988632 1246678889999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010229 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
|.+.|++..+... .+...|..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988654 46788999999999999999999999999876 34444444455556777899999999987776
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010229 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR---PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
.. +++...+. ++..+...++.++|.+.+++....... .+...|..+...|.+.|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 53 33433443 666777788888888888887654211 01466777888888888888888888888764 3422
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122234555666666665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-11 Score=122.26 Aligned_cols=423 Identities=10% Similarity=0.061 Sum_probs=294.0
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCChHhH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---TLEADAIFQEMVCFG-FNPKLRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~~~~ 150 (514)
.|...|..++..+.+.++++.+..+|+++... ++.....|...+..-.+.++ ++.+.++|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778999999999999999999999999887 36677889999998888898 999999999998754 13888899
Q ss_pred HHHHHHHHhcCCh--------hhHHHHHHHHHH-cCC-CcC-hHhHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 010229 151 NILLRGFLKKGLL--------GLGSRLLMVMED-MGI-CRN-QETYEILLDYHVN---------AGRLDDTWLIINEMRS 210 (514)
Q Consensus 151 ~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 210 (514)
..-+.-..+.++. +...++|+.... .|. .++ ...|...+..... .++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665554 334578887654 355 443 5688888876543 3457788899999885
Q ss_pred cCCCCChhhHHHHHHHHHc-------------cCChHHHHHHHHHHHHc--CC----C-----------C-----C---H
Q 010229 211 KGFQLNSFVYGKVIGLYRD-------------NGMWKKAVGIVEEIREM--GL----S-----------L-----D---R 252 (514)
Q Consensus 211 ~g~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~~----~-----------~-----~---~ 252 (514)
.....-..+|......-.. ..+++.|...+.++... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3211112333222211111 11233444555443221 11 1 1 1 2
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHH
Q 010229 253 QIYNSIIDTFGKYG-------ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL-ELFTQMQEQGFYPDPKI 324 (514)
Q Consensus 253 ~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~ 324 (514)
..|...+..--..+ ..+.+..+|++.... .+-+...|...+.-+.+.|+.++|. ++|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45555555433322 123456678887664 3347788888888888899999997 999999874 3446666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC----------CCC-----------cHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010229 325 FITIISCLGELGKWDVIKKNFENMKDRG----------HGK-----------IGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
+...+....+.|+++.|..+|+.+++.. .+. ...+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999988641 111 2346888888888889999999999999
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-
Q 010229 384 KLE-GLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP- 460 (514)
Q Consensus 384 ~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 460 (514)
.+. +. .....|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 22 2223443333333344 4589999999999886 45567778888888889999999999999998764422
Q ss_pred -CHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 010229 461 -DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (514)
Q Consensus 461 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 504 (514)
....|...+..-.+.|+.+.+.++.+++.+. .|+......+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 3457888888888999999999999999984 45544444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=126.20 Aligned_cols=248 Identities=9% Similarity=0.067 Sum_probs=192.3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
...|..+...+...|++++|++.++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++.+... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567788888899999999999999999875 5567889999999999996 9999999999998765 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELV 269 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~ 269 (514)
.+...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.+ +.+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999887543 67888888889999999999999999998875 4578888888888888 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------
Q 010229 270 EA-----LEVFEKMQQESIRPDIVTWNSLIRWHCKAG--DVAKALELFTQMQEQGFYPDPKIFITIISCLGELG------ 336 (514)
Q Consensus 270 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 336 (514)
+| ++.|++..... +-+...|+.+...+.+.| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777776643 225677888888888777 578888888877 32 3345677777777777763
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHH
Q 010229 337 ---KWDVIKKNFENM-KDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 337 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 367 (514)
..++|.++++++ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5543 33445555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-13 Score=118.69 Aligned_cols=192 Identities=10% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccC
Q 010229 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKYG 266 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 266 (514)
...+...|++++|+..|++..+.... +...+..+...+...|++++|++.++++.+....+ ....|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444433211 22233444444444444444444444444321001 1222444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++++|.+.|++..+... .+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443211 123344444444445555555555554444331 1123333333312222234445555444
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCC---cchHHHHHHHHH
Q 010229 347 NMKDRGHGKIGAIYAILVDIYGQYGR---FRDPEECIAALK 384 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 384 (514)
.+.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 444432 2223334444444444444 444554444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=120.05 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444445555555555555554421 2234444444555555555555555555554443 234455555555556
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
..|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555432 244556666666666666666666666665542 3355666666677777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|+++.+... .+..++..+..++...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 7776665432 2455666677777777777777777777766
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=124.08 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010229 196 GRLDDTWLIINEMRSKGFQ---LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 272 (514)
|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443210 123334444444555555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
+.|++..+.. +.+...|..+...|.+.|++++|...++++.+
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555544431 11334444555555555555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=130.58 Aligned_cols=276 Identities=17% Similarity=0.071 Sum_probs=182.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFNP 145 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~ 145 (514)
+.....+......+.+.|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455567778888899999999999999998874 233 356888889999999999999999887542 2111
Q ss_pred -ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-c----ChHhHHHHHHHHHhcCC--------------------HH
Q 010229 146 -KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGR--------------------LD 199 (514)
Q Consensus 146 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~ 199 (514)
...++..+...+...|++++|...+++..+.... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778888889999999999988887653110 1 13477778888888888 88
Q ss_pred HHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHH
Q 010229 200 DTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 200 ~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 269 (514)
+|.+.+.+.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888887776442 1111 134566667777777888888877777654310 011 235666777777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHH
Q 010229 270 EALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWD 339 (514)
Q Consensus 270 ~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~ 339 (514)
+|...+++..+... .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 77777776553210 011 34566666677777777777777776653210 011 334555566666666777
Q ss_pred HHHHHHHHHHh
Q 010229 340 VIKKNFENMKD 350 (514)
Q Consensus 340 ~a~~~~~~~~~ 350 (514)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=128.81 Aligned_cols=302 Identities=14% Similarity=0.041 Sum_probs=171.1
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010229 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
...+......+.+.|++++|...|++..+.+.... ...|..+...+...|++++|...+++.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 34444455555555666666666655555422110 2344455555555555555555555543210
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWH 297 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~ 297 (514)
...+.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 000000 1123444445555555555555555554432100 001 23455556666
Q ss_pred HhcCC--------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010229 298 CKAGD--------------------VAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 298 ~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666 66666666654421 1111 12345556666777777777777777665421
Q ss_pred C-----CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 010229 353 H-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQQGLCEQTVKVLQLMEPE- 421 (514)
Q Consensus 353 ~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 421 (514)
. .....++..+...|...|++++|...+++....... ++ ..++..+...|...|++++|.+.+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111236777777888888888888888776543111 11 456777888888999999999988877653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCCcc
Q 010229 422 ---GIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISP-DLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 422 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 479 (514)
+-.+ ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 1457788889999999999999999987532 2222 2446777888888877763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=127.93 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=145.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCC
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF----G-FNPK 146 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~ 146 (514)
....+..+...+.+.|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667778899999999999999998874 2233 46888888999999999999999987653 1 1223
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCcChHhHHHHHHHHHhcCC-----------------HHHHHHH
Q 010229 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-----ICRNQETYEILLDYHVNAGR-----------------LDDTWLI 204 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 204 (514)
..++..+...|...|++++|.+.+++..+.. ......++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4667788888888999999988888776531 11224467777777777888 7777777
Q ss_pred HHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 010229 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 205 ~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6665432 1111 1234555555666666666666666655432100 01 12444555555555555555555
Q ss_pred HHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 275 FEKMQQESI--R---PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 275 ~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
+++..+... . ....++..+...|...|++++|...+++..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554432100 0 012334444445555555555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-11 Score=111.61 Aligned_cols=235 Identities=14% Similarity=0.084 Sum_probs=169.6
Q ss_pred chHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCh-------HHHHHHH
Q 010229 78 NSYNKSIQYCCKL----GDI----DEAMALLAQMQALGFHPSSISYASLIEALAS-------VGRT-------LEADAIF 135 (514)
Q Consensus 78 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~ 135 (514)
..|...+..-.+. ++. ++|+.+|+++.... +.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3566666654443 233 68889999988763 5577788888877763 4775 8899999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010229 136 QEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 136 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
++..+.-.+.+...|..++..+.+.|++++|.++|++..+..+ .+.. .|..++..+.+.|++++|..+|++..+...
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 9988731144566888888888899999999999999887432 1233 788888888888999999999988887642
Q ss_pred CChhhHHHHHHHHH-ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 010229 215 LNSFVYGKVIGLYR-DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTW 290 (514)
Q Consensus 215 ~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~ 290 (514)
.+...|........ ..|++++|.++|+..++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 23444443333322 3688888888888887653 3467778888888888888888888888887752 343 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 010229 291 NSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
..++....+.|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777888888888888887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-13 Score=126.41 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCcChH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQE 183 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 183 (514)
..+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|.+.|++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556778889999999999999999874 2233 47888889999999999999999887653 1 112456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCChhhHHHHHHHHHccCC-----------------hHHHHHHHH
Q 010229 184 TYEILLDYHVNAGRLDDTWLIINEMRSKG----F-QLNSFVYGKVIGLYRDNGM-----------------WKKAVGIVE 241 (514)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 241 (514)
.+..+...|...|++++|...+++..... - .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888889999999998888875531 1 1123456666677777777 666666666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 242 EIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 242 ~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
+..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 10 11123455555566666666666666655543200 001 1244455555555555555555555
Q ss_pred HHH
Q 010229 312 QMQ 314 (514)
Q Consensus 312 ~m~ 314 (514)
+..
T Consensus 288 ~al 290 (411)
T 4a1s_A 288 RTL 290 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-10 Score=113.74 Aligned_cols=412 Identities=10% Similarity=0.092 Sum_probs=279.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhhHHH
Q 010229 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL---LGLGSR 168 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 168 (514)
...+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555666666554 678999999999999999999999999999986 46778889988888888888 999999
Q ss_pred HHHHHHHcC-CCcChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHc-------
Q 010229 169 LLMVMEDMG-ICRNQETYEILLDYHVNAGRL--------DDTWLIINEMRS-KGF-QLN-SFVYGKVIGLYRD------- 229 (514)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~~-~~~~~~ll~~~~~------- 229 (514)
+|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998764 237888999988877665543 334477777654 465 554 4677777765432
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHh----------ccCCHHHHHHHHHHHHHC--CCC--------
Q 010229 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIID---TFG----------KYGELVEALEVFEKMQQE--SIR-------- 284 (514)
Q Consensus 230 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~----------~~~~~~~A~~~~~~m~~~--~~~-------- 284 (514)
.++++.+..+|+.++......-..+|..... .+. ...+++.|...+.++... ++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 3456788899999886422212233322211 110 012344455555543211 110
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010229 285 -------P-----D---IVTWNSLIRWHCKAG-------DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 285 -------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
| + ...|...+.---..+ ..+.+..+|++.... ++-.+..|...+.-+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 234555554332222 123456778888764 3447778888888888889998996
Q ss_pred -HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC---------CCCC------------HHHHHHHHH
Q 010229 343 -KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG---------LQPS------------GSMFCILAN 400 (514)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~ 400 (514)
.+++...... +.+...|-..+....+.|++++|.++|+.+.... -.|+ ..+|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 5667778888999999999999999999987641 0132 346888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010229 401 AYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVA-GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
...+.|..+.|..+|..+.+. + ......|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 888889999999999999875 2 22333443333333344 4589999999999875 334667788888888889999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010229 479 HKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
+.|..+|++..... |+......+...+..++
T Consensus 521 ~~AR~lferal~~~--~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 521 SQVKSLFESSIDKI--SDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHHHHTTTS--SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHH
Confidence 99999999998753 32222334444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=121.65 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=119.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHh
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRF 149 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 149 (514)
.+......+.+.|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556677788899999999999988763 223 356778888888999999999988876542 111 22456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-cC----hHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 010229 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RN----QETYEILLDYHVNAGR--------------------LDDTWLI 204 (514)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 204 (514)
+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777778888888888888888776543110 11 3366667777777777 6777666
Q ss_pred HHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCCHHHHHHH
Q 010229 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-----SLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 205 ~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6655332 1011 122444455555555666666655555443210 00112344444444555555555555
Q ss_pred HHHH
Q 010229 275 FEKM 278 (514)
Q Consensus 275 ~~~m 278 (514)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=120.83 Aligned_cols=276 Identities=14% Similarity=0.071 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-cChHh
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQET 184 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~ 184 (514)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44555677788899999999999988764 223 356778888888899999998888876542 111 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCC--------------------hHHHHHH
Q 010229 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNGM--------------------WKKAVGI 239 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 239 (514)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777777888888888888888776543111 11 2355666666667777 6666666
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 010229 240 VEEIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 240 ~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
+++..+. +. .....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654431 10 11123445555555556666666655555432100 001 12344444555555555555555
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 010229 310 FTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (514)
Q Consensus 310 ~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 388 (514)
+++..+... ..+. .....++..+...|...|++++|...+++......
T Consensus 246 ~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 554432100 0010 00123444455555555555555555555433210
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010229 389 -----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 389 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
.....++..+...|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001234555666666777777777777666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=118.11 Aligned_cols=226 Identities=11% Similarity=-0.041 Sum_probs=117.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCH--hhHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCChHh
Q 010229 87 CCKLGDIDEAMALLAQMQAL--GFHPSS--ISYASLIEA--LASVGRTLEAD-----------AIFQEMVCFGFNPKLRF 149 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~--~~~~~~--~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~~~~ 149 (514)
+.+.+++++|..+++++.+. .+..|. ..|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 35789999999999998664 222333 333333322 11223333444 5555554321 11111
Q ss_pred ------HHHHHHHHHhcCChhhHHHHHHHHHHc----CCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 010229 150 ------YNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-L-- 215 (514)
Q Consensus 150 ------~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-- 215 (514)
+-.....+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.-.. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112445566677777777777777653 1111 2346666677777777777777777666542110 0
Q ss_pred ---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CC
Q 010229 216 ---NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEVFEKMQQ-----ES 282 (514)
Q Consensus 216 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~ 282 (514)
...+++.+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1234555556666666666666666655432100 01 12455555555556666666655555543 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.+....++..+...|.+.|++++|...+++..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11123445555555555555555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-12 Score=104.90 Aligned_cols=167 Identities=14% Similarity=0.047 Sum_probs=105.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
++..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34456677777777777777777777776654 3456667777777777777777777777766653 344555666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+...++++.|.+.+++..+... .+...+..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 66666777777776666665433 34555666666666666666666666666554322 45555556666666666666
Q ss_pred HHHHHHHHHHc
Q 010229 236 AVGIVEEIREM 246 (514)
Q Consensus 236 a~~~~~~~~~~ 246 (514)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666665553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.2e-12 Score=118.44 Aligned_cols=228 Identities=7% Similarity=0.007 Sum_probs=107.6
Q ss_pred HHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--CC----CCHHHHHHH
Q 010229 225 GLYRDNGMWKKAVGIVEEIREM----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQES--IR----PDIVTWNSL 293 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~----p~~~~~~~l 293 (514)
..+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.. .. ....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1001 12345555555555666666655555544310 00 012345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCcHHHHHHH
Q 010229 294 IRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAIL 363 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 363 (514)
...|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 5666666666666666665543200 011 124445555555666666666665555441 11 2234455555
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010229 364 VDIYGQYGRFRDPEECIAALKLEG----LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...|.+.|++++|...+++..... -......+..+...+...|+ +++|..++++... .+.....+..+...
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHH
Confidence 555555666666655555543321 00011123334444555555 4444444444411 01122344455555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 010229 437 FGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~ 454 (514)
|...|++++|.+.+++..
T Consensus 349 y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666665555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-11 Score=103.13 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=102.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45566667777777777777777777766654 34556666666667777777777776666665433 34455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
.+...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666554222 44555555666666666666666666665543 3345555666666666666666
Q ss_pred HHHHHHHHHHC
Q 010229 271 ALEVFEKMQQE 281 (514)
Q Consensus 271 A~~~~~~m~~~ 281 (514)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666655543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=120.60 Aligned_cols=214 Identities=12% Similarity=0.006 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010229 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL-VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445555444332 33556666666666666666 66666666665542 1245566666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc--------CCcc
Q 010229 312 QMQEQGFYPDPKIFITIISCLGEL---------GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY--------GRFR 374 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 374 (514)
+..+. .|+...+..+...+... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66653 35556666666666666 67777777777766654 34556666666666666 7777
Q ss_pred hHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010229 375 DPEECIAALKLEGLQ--PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHL 452 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (514)
+|.+.|++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777665321 356677777777777777777777777776653 33556677777777777777777765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-12 Score=123.41 Aligned_cols=215 Identities=11% Similarity=0.002 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010229 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIIN 206 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 206 (514)
++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 33556666666666666666 666666666665433 345566666666666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCHH
Q 010229 207 EMRSKGFQLNSFVYGKVIGLYRDN---------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--------GELV 269 (514)
Q Consensus 207 ~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~ 269 (514)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666553 4455666666666666 66677777776666653 33566666666666666 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010229 270 EALEVFEKMQQESIR--PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
+|++.|++..+.... .+...|..+...|...|++++|++.|++..+.. +-+...+..+...+...|++++|...+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777666654210 256666666677777777777777777666542 22445566666666666666666655444
Q ss_pred H
Q 010229 348 M 348 (514)
Q Consensus 348 ~ 348 (514)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-11 Score=107.53 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHcc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCCH-------HHHHHH
Q 010229 217 SFVYGKVIGLYRDN----GMW----KKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-------YGEL-------VEALEV 274 (514)
Q Consensus 217 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~ 274 (514)
...|...+....+. ++. ++|..+|++++... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555566554443 232 56777777777653 4566777777766653 4664 777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010229 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PK-IFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .+..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776211224556777777777777777777777777763 332 22 66667777777777777777777777654
Q ss_pred CCCcHHHHHHHHHHHH-hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHH
Q 010229 353 HGKIGAIYAILVDIYG-QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-IEP--NLV 428 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~ 428 (514)
. .+...|........ ..|+.++|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ++| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2 33344433333322 25777777777777665532 255666677777777777777777777776642 333 355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|..++....+.|+.++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-10 Score=110.72 Aligned_cols=241 Identities=13% Similarity=-0.026 Sum_probs=116.1
Q ss_pred ccCcchHHHHHHHH--HhcCCHHHHHHHHHHHHHCC--CCCC--HhhHHHHHHH--HHhcCChHHHH---------HHHH
Q 010229 74 EFSGNSYNKSIQYC--CKLGDIDEAMALLAQMQALG--FHPS--SISYASLIEA--LASVGRTLEAD---------AIFQ 136 (514)
Q Consensus 74 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~ 136 (514)
.|+...-+.+-..| .+.+++++|.++++++.+.. +..| ...|-.++.. ..-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444455555566 78899999999999876531 2223 2233333332 11112222222 4444
Q ss_pred HHHHcCCCCCh----HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-c----ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010229 137 EMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 137 ~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
.+.....+.+. ..+-.....+...|++++|...|++..+.... + ...++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44321100010 11222334445667777777777666543100 1 234555666666666666666666666
Q ss_pred HHHcCC-----CC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010229 208 MRSKGF-----QL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDTFGKYGELVEALEVFE 276 (514)
Q Consensus 208 m~~~g~-----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~ 276 (514)
..+... .+ ...+++.+...|...|++++|.+.+++..+. +.+ ....+++.+...|...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 543210 10 1234445555566666666666666555432 100 112344455555555555555555555
Q ss_pred HHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 277 KMQQ-----ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 277 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
+..+ ... ....++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5443 211 1234444555555555555555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=112.92 Aligned_cols=239 Identities=11% Similarity=0.006 Sum_probs=172.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------G 142 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g 142 (514)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999999998873 22334567888999999999999999999998764 2
Q ss_pred C-CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------CC-CcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 010229 143 F-NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--- 211 (514)
Q Consensus 143 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 211 (514)
- +....++..+...|...|++++|.+.|++..+. +. ......+..+...+...|++++|.+.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888999999999999999999998764 21 234567888999999999999999999998764
Q ss_pred ---CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC-------CCCC-------HHHHHHHHHHHhccCCHHHHHH
Q 010229 212 ---GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG-------LSLD-------RQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 212 ---g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~A~~ 273 (514)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 34567888899999999999999999988631 1111 1122223333444455555666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
.+....... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666655431 22456788899999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=112.04 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=173.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------C
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------G 177 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 177 (514)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998873 22345677888999999999999999999998764 1
Q ss_pred -CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHc---
Q 010229 178 -ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM--- 246 (514)
Q Consensus 178 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 246 (514)
......++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234668889999999999999999999998764 22 223566788889999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 010229 247 ---G-LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-------SIRPD-------IVTWNSLIRWHCKAGDVAKALE 308 (514)
Q Consensus 247 ---~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~-------~~~~~~li~~~~~~g~~~~A~~ 308 (514)
+ .+....++..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 1223567888999999999999999999998752 11111 1122223333445556666677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 309 LFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 309 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.+...... ...+..++..+..+|.+.|++++|...+++..+.
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77766543 1234567888999999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-10 Score=105.78 Aligned_cols=299 Identities=12% Similarity=0.045 Sum_probs=187.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHH
Q 010229 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIY 255 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 255 (514)
+......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999998887764322222 455566777788999999888888765311 112 2335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 010229 256 NSIIDTFGKYGELVEALEVFEKMQQE----SIR--PD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY--P--DPKI 324 (514)
Q Consensus 256 ~~li~~~~~~~~~~~A~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~ 324 (514)
..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777788888888888888876542 211 22 345566777788888888888888887653211 1 2345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CcHHHHH----HHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHHHH
Q 010229 325 FITIISCLGELGKWDVIKKNFENMKDRGHG--KIGAIYA----ILVDIYGQYGRFRDPEECIAALKLEGLQP---SGSMF 395 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 395 (514)
+..+...+...|++++|...+++....... ....... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 666777778888888888888877653111 1111111 23344667888888888887766433211 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPE----GIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++...... . ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 56677777888888888888776542 212222 2556667777788888888888887765310 0 11223
Q ss_pred HHHcCCCcchHHHHHHHHHhC
Q 010229 471 AFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 344444 5666677777663
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=109.48 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=139.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC---CC-CHHHHHH
Q 010229 259 IDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GF---YP-DPKIFIT 327 (514)
Q Consensus 259 i~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~~~~~ 327 (514)
...+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+. .. .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566777777777776654310 112 345566666777777777777777766532 00 10 1345556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----cCCCCCHHHHHH
Q 010229 328 IISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKL-----EGLQPSGSMFCI 397 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 397 (514)
+...|...|++++|...+.+..+. +. .....++..+...|...|++++|.+.+++... ... ....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHH
Confidence 666777777777777777666542 11 11234566677777777888888777777765 322 22556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHH
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEPEG----IEPNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPD-LVTYSTLM 469 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 469 (514)
+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 7777888888888888887765531 11123345555566666677 66666666652 22222 33556777
Q ss_pred HHHHcCCCcchHHHHHHHHHh
Q 010229 470 KAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-10 Score=104.10 Aligned_cols=268 Identities=12% Similarity=-0.001 Sum_probs=153.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHH
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSI----SYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----LRFYNI 152 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~ 152 (514)
.....+...|++++|+..+++.....-..+.. +++.+...+...|++++|.+.+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999987754222222 456667778888999999998888765210 111 123556
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc----CCC--c-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHH
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDM----GIC--R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYG 221 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~ 221 (514)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 677777888888888888776543 111 1 23455666777777888888888887776543211 123455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 010229 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSL-D-RQIYN----SIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNS 292 (514)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ 292 (514)
.+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 56666777777777777777665431111 1 11111 22233556677777777766655432111 1223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010229 293 LIRWHCKAGDVAKALELFTQMQEQ----GFYPDP-KIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555666666666666666655431 111111 133333444445555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-10 Score=97.47 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=106.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445666777777788888888887776543 3456667777777777777777777777777653 34566666677777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 237 (514)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777666533 345566666666666666666666666665543 223455555555566666666666
Q ss_pred HHHHHHHH
Q 010229 238 GIVEEIRE 245 (514)
Q Consensus 238 ~~~~~~~~ 245 (514)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=118.89 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=147.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5679999999999999999999999998874 4467899999999999999999999999999875 4568899999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999988654 46789999999999999999999999999987433 678899999999999999999
Q ss_pred HHHHHHHHH
Q 010229 237 VGIVEEIRE 245 (514)
Q Consensus 237 ~~~~~~~~~ 245 (514)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-10 Score=94.99 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44555556666666666666666655432 33455555566666666666666666666555422 23445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
..|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 1133444444444444555555555554444432 2233444444444444444444444
Q ss_pred HHHHH
Q 010229 274 VFEKM 278 (514)
Q Consensus 274 ~~~~m 278 (514)
.+++.
T Consensus 166 ~~~~~ 170 (186)
T 3as5_A 166 HFKKA 170 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=116.55 Aligned_cols=167 Identities=9% Similarity=-0.008 Sum_probs=147.5
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHH
Q 010229 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 189 (514)
-+..+|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 346789999999999999999999999999875 45678999999999999999999999999988654 4578999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010229 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
..+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|++.|++.++.. +-+...+..+...|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999887433 67889999999999999999999999999875 456889999999999999999
Q ss_pred HHHHHHHHHHH
Q 010229 270 EALEVFEKMQQ 280 (514)
Q Consensus 270 ~A~~~~~~m~~ 280 (514)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-09 Score=94.41 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010229 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 366 (514)
...+......+...|++++|+..|++..+....++...+..+..++...|++++|...++...+.. +.+..++..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444455555555555555555443222344444444455555555555555555555443 2234455555555
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHH
Q 010229 367 YGQYGRFRDPEECIAALKLEGLQPSG-------SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN---LVMLNVLINA 436 (514)
Q Consensus 367 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~ 436 (514)
|...|++++|...+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 5555555555555555554422 122 23555556666777777777777777664 343 4456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
|...| ...++++...+.. +...|.... ....+.+++|...+++..+ +.|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 65433 3334444433222 333333332 2234556777777777776 455443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-09 Score=93.85 Aligned_cols=194 Identities=10% Similarity=-0.041 Sum_probs=151.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
|+..|......+.+.|++++|++.|++..+..-+++...+..+..++...|++++|++.|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4567888889999999999999999999887633788888889999999999999999999999875 446778999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcCh-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ-------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIG 225 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~ 225 (514)
++...|++++|.+.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 99999999999999999988653 234 45888888899999999999999999876 343 456666666
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
++... +...++++...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66544 344455555543 23444444443 23446689999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=103.98 Aligned_cols=227 Identities=12% Similarity=0.015 Sum_probs=153.1
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChHhHHHHH
Q 010229 89 KLGDIDEAMALLAQMQA-------LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------GF-NPKLRFYNILL 154 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li 154 (514)
..|++++|+..|++..+ ...+....++..+...+...|++++|...++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 222234667888999999999999999999988764 21 23456788899
Q ss_pred HHHHhcCChhhHHHHHHHHHHc------C-CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhH
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQL-NSFVY 220 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 220 (514)
..|...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 1 1234667888999999999999999999998765 1122 35677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCC
Q 010229 221 GKVIGLYRDNGMWKKAVGIVEEIREM-------GL-SLDRQIYNSIIDTFGKYGE------LVEALEVFEKMQQESIRPD 286 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~ 286 (514)
..+...+...|++++|...+++..+. .. ......+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88889999999999999999988763 11 1122233333333332222 33333333332211 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010229 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888899999999999999999988753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=102.70 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=159.5
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------C-CCcChHhHHHH
Q 010229 123 ASVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEIL 188 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 188 (514)
...|++++|+..|++..+. ..+....++..+...|...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766552 22334677889999999999999999999998764 1 12345688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc------C-CCCCHHH
Q 010229 189 LDYHVNAGRLDDTWLIINEMRSK------G-FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------G-LSLDRQI 254 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 254 (514)
...+...|++++|.+.+.+.... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888889999999999999999998865 1 1224567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCChHHHH------HHHHHHHHCCCCC
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQE-------SIRP-DIVTWNSLIRWHCKAGDVAKAL------ELFTQMQEQGFYP 320 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p 320 (514)
+..+...|.+.|++++|.+.+++..+. ...+ ....|..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 1112 2223333333333333322222 22221111 1112
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 321 DPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 321 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
...++..+...+...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778889999999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-08 Score=96.76 Aligned_cols=369 Identities=8% Similarity=-0.006 Sum_probs=201.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCC-CChHhHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCF-GFN-PKLRFYNILLR 155 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li~ 155 (514)
.|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 45566666544 7788888888877764 4677777777776666553 34566677766652 422 35566666665
Q ss_pred HHH----hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 156 GFL----KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 156 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.+. ..++.+.+.++|++........-...|......-. ......+.+++.+. .+
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~---------------------~~ 151 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDT---------------------LP 151 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHH---------------------HH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHH---------------------hH
Confidence 443 23556677777777776321111112222221111 11111122111111 01
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG--E-----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
.+..|..+++.+...--..+...|...++.-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 23333444443332100013345555444422211 0 234566777776542 335667777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC------------CCCcHHHHHHHHHHHHhcCC
Q 010229 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG------------HGKIGAIYAILVDIYGQYGR 372 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~ 372 (514)
+|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+....+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 888888888775 33322211 12221111111 22221110 01112456666666667778
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010229 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQ-QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.. +-+...|...+....+.|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88899999888 32 22344444432222222 236889999998887752 2345556667777788899999999998
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 452 LMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 452 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
++. .....|...+.--...|+.+.+.++++++.+
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 873 2567788887777778988888888888774
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-09 Score=83.53 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..+...+.+.|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677778888888888888888887664 4456777777788888888888888888877654 445666777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78888888888777776543 34566667777777777777777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-08 Score=88.39 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010229 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333334444455555555555555555443322 1123344444444555555555555555544
Q ss_pred h
Q 010229 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-09 Score=97.07 Aligned_cols=89 Identities=10% Similarity=-0.143 Sum_probs=38.6
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---c--ChHhHHHHHH
Q 010229 121 ALASVGRTLEADAIFQEMVCF----GFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC---R--NQETYEILLD 190 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~li~ 190 (514)
.|...|++++|.+.|.+..+. |-+++ ..+|+.+..+|.+.|++++|...|++..+.... + -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555554431 11111 234455555555555555555555544331100 0 0223444444
Q ss_pred HHHhc-CCHHHHHHHHHHHH
Q 010229 191 YHVNA-GRLDDTWLIINEMR 209 (514)
Q Consensus 191 ~~~~~-g~~~~A~~~~~~m~ 209 (514)
.|... |++++|+..|++..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 44443 55555554444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-09 Score=95.01 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=138.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--Ch
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL----GFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGF---NP--KL 147 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~---~~--~~ 147 (514)
..|+.....|...|++++|++.|++..+. |-+++ ..+|+.+..+|...|++++|+..|++..+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 32222 46899999999999999999999998876321 11 14
Q ss_pred HhHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCc-C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---
Q 010229 148 RFYNILLRGFLKK-GLLGLGSRLLMVMEDMGICR-N----QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF--- 218 (514)
Q Consensus 148 ~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 218 (514)
.+++.+...|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++...........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999987642111 1 3467788888888888888888888888764332221
Q ss_pred ---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 010229 219 ---VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR------QIYNSIIDTFG--KYGELVEALEVFEKMQ 279 (514)
Q Consensus 219 ---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~~~~~~A~~~~~~m~ 279 (514)
.+..+..++...|++++|...+++..+.. |+. ..+..++.++. ..+++++|++.|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 45566667777788888888777766532 221 12333444443 3345666666665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-08 Score=87.72 Aligned_cols=179 Identities=10% Similarity=-0.018 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 201 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444332 22333344444555555555555555555544432 1234455555566666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 280 QESIRP-----DIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 280 ~~~~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
+. .| +..+...+..++.. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 33 13334444444221 22666666666666543 23322333333456666666666666665443
Q ss_pred cC---------CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 010229 351 RG---------HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 351 ~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 386 (514)
.. -+.++.++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 13344555444444444454 666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=8.8e-07 Score=86.34 Aligned_cols=340 Identities=11% Similarity=-0.002 Sum_probs=202.4
Q ss_pred CccCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHC-CC-CCCHhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCC
Q 010229 73 EEFSGNSYNKSIQYCCKLGD-IDEAMALLAQMQAL-GF-HPSSISYASLIEALA----SVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
..|++..|...+....+.++ .+....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+.. ++
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~ 120 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PM 120 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CC
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hh
Confidence 35788999999998888774 46677888887764 42 346778888877654 346788999999999973 22
Q ss_pred ChHhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010229 146 KLRFYNILLRGFLK---KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (514)
Q Consensus 146 ~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 222 (514)
. .+..+-..|.. ......+.++..+.. +.+..|..+++++...-...+...|..
T Consensus 121 ~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 121 G--SLSELWKDFENFELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp T--THHHHHHHHHHHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred h--hHHHHHHHHHHHHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 1 11222222221 111122222222111 123333434433322100012234444
Q ss_pred HHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010229 223 VIGLYRDNG--M-----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (514)
Q Consensus 223 ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (514)
.+..-...+ - .+.+..+|++++... +.+...|-..+..+.+.|+.+.|..++++.... +.+...|.
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~---- 250 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL---- 250 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----
Confidence 444322211 1 244667888877653 456777887788888888888888888888776 33332232
Q ss_pred HHHhcCChHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 010229 296 WHCKAGDVAKALELFTQMQEQ---------GFYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAIL 363 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~---------g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (514)
.|....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+.+ +.. ..+..+|...
T Consensus 251 ~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~ 325 (493)
T 2uy1_A 251 YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC 325 (493)
T ss_dssp HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH
T ss_pred HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH
Confidence 22222122222 2222211 0011 1244566666666778899999999998 322 2344455433
Q ss_pred HHHHHhcC-CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 010229 364 VDIYGQYG-RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 364 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (514)
...-...+ +.+.|..+|+...+... -+...|...++.....|+.+.|..+|+.+.+ ....|...+..-...|+
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence 33333333 69999999999987642 2455667777777888999999999999842 56788888888788899
Q ss_pred HHHHHHHHHHHHH
Q 010229 443 YKEALSVYHLMKD 455 (514)
Q Consensus 443 ~~~A~~~~~~m~~ 455 (514)
.+.+..+++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-08 Score=79.18 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34455555666666666666666665543 23445555555555556666666666655554432 23444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
..|++++|.+.++++..... .+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555544321 1333444444444444444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.7e-09 Score=88.13 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS----------------LIEALASVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
.....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|+..|++..+.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 34456678889999999988887753 223344444 4455555555555555555555443 23
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+...+..+..++...|++++|.+.|++..+..+ .+...|..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 444555555555555555555555555554332 23444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-07 Score=82.47 Aligned_cols=223 Identities=6% Similarity=-0.005 Sum_probs=154.4
Q ss_pred HhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH----Hhc
Q 010229 88 CKLGDI-DEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFGFNPKLRFYNILLRGF----LKK 160 (514)
Q Consensus 88 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~ 160 (514)
.+.|.+ ++|+++++++...+ +-+...|+.--..+...| +++++++.++.+.... +.+..+|+.-...+ .+.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 444554 68999999998875 445667888888888888 9999999999998865 45666777655555 445
Q ss_pred ---CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---
Q 010229 161 ---GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (514)
Q Consensus 161 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--- 232 (514)
+++++++++++++.+... .+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 678888888888887655 57778888777777778777 888888888876543 56666665555666555
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 010229 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A 306 (514)
++++++.+++++... +.|...|+-+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 677777777777664 4567777776666666665333 444555443321 123556666666777777777777
Q ss_pred HHHHHHHHH
Q 010229 307 LELFTQMQE 315 (514)
Q Consensus 307 ~~~~~~m~~ 315 (514)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=90.03 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-CChHhH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGF-N-PKLRFY 150 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~-~~~~~~ 150 (514)
+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|+..|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34556667778889999999999999998763 223 56788888999999999999999999988631 1 224566
Q ss_pred HHHHHHHHh--------cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010229 151 NILLRGFLK--------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (514)
Q Consensus 151 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 222 (514)
..+..++.+ .|++++|...|+++.+..+ .+...+..+.. +...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 777788888 8999999999998887543 12222221110 0000000 0111334
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 010229 223 VIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKY----------GELVEALEVFEKMQQE 281 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~ 281 (514)
+...+.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666665542111 233455555555544 6666666666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=86.23 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010229 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
...+......+.+.|++++|+..|++..+. .|+. ..+.. ..... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHH
Confidence 334444555677888888888888888764 3332 22222 00000 00111222334667
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--H
Q 010229 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--Y 443 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~ 443 (514)
.|.+.|++++|...|++..+..+ -+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 77777888888888877776643 356677777777778888888888888777653 3456677777777665543 3
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010229 444 KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 344445544432 222223344445556667788888888888776 6777655554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-09 Score=107.19 Aligned_cols=172 Identities=7% Similarity=-0.085 Sum_probs=115.8
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010229 123 ASVGRTLEADAIFQEMV--------CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56677777777777776 332 34556677777777777777777777777766543 355677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010229 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777766322 45666777777777777777 77777777664 34666777777778888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 010229 275 FEKMQQESIRPD-IVTWNSLIRWHCKAG 301 (514)
Q Consensus 275 ~~~m~~~~~~p~-~~~~~~li~~~~~~g 301 (514)
|++..+. .|+ ...|..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 8777654 343 445656666654433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=89.26 Aligned_cols=186 Identities=10% Similarity=0.029 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCcHHH
Q 010229 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGH--GKIGAI 359 (514)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 359 (514)
.+...+..+...+.+.|++++|+..|+++.+... .+ ...+..+..++.+.|++++|...++.+.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566777778888899999999999999887532 12 56777788888899999999999998887642 223456
Q ss_pred HHHHHHHHHh--------cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 010229 360 YAILVDIYGQ--------YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLN 431 (514)
Q Consensus 360 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 431 (514)
+..+..++.. .|++++|...|+++....+. +......+ ..+...... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 7777777877 88888888888888776432 11122111 000000000 011134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcC----------CCcchHHHHHHHHHh
Q 010229 432 VLINAFGVAGKYKEALSVYHLMKDIGISP--DLVTYSTLMKAFIRA----------KKFHKVPEIYKQMES 490 (514)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~ 490 (514)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 45566666666666666666665532211 233455555555544 566666666666665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-06 Score=78.75 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCcChHhHHHHHHHH----Hhc---CC
Q 010229 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYH----VNA---GR 197 (514)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 197 (514)
..++|+++++.++... +.+..+|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 455667888888888888 89999999999988665 4566777665555 444 67
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------HH
Q 010229 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------LV 269 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 269 (514)
+++++++++.+.+...+ +..+|+.-...+.+.|.++ ++++.++++++.+ +.|...|+.....+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 88888888888876433 5666666666666777777 7888888887765 4467777766666666555 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010229 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK-ALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++++.++++....+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..++..+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 77777777665532 366667766666666665333 334444444321 12345555566666666666666666666
Q ss_pred HHHh
Q 010229 347 NMKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=84.92 Aligned_cols=163 Identities=8% Similarity=-0.023 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-H
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-F 157 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~ 157 (514)
.+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35567778888999999999999876653 4467788888999999999999999998887653 344433332222 1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHH
Q 010229 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a 236 (514)
...+....|...|++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333456777777776543 356777888888888888888888888887764432 345677777788888888888
Q ss_pred HHHHHHHHH
Q 010229 237 VGIVEEIRE 245 (514)
Q Consensus 237 ~~~~~~~~~ 245 (514)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-08 Score=103.22 Aligned_cols=173 Identities=10% Similarity=-0.088 Sum_probs=140.0
Q ss_pred HhcCChhhHHHHHHHHH--------HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 010229 158 LKKGLLGLGSRLLMVME--------DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 229 (514)
...|++++|.+.+++.. +... .+...|..+...+...|++++|++.|++..+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 4332 46678889999999999999999999999886432 67788888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010229 230 NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
.|++++|++.|++.++.. +.+...+..+...|.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875 4467888899999999999999 99999988753 23677889999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCC
Q 010229 310 FTQMQEQGFYPD-PKIFITIISCLGELGK 337 (514)
Q Consensus 310 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 337 (514)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 455 4566666666665554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=81.01 Aligned_cols=29 Identities=17% Similarity=-0.024 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 287 IVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
...+..+...|...+++++|+.+|++..+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-07 Score=78.73 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=55.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010229 182 QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG----MWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+..+...|...+++++|++.|++..+.| ++..+..+...|.. + ++++|.++|++..+.+ +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3334444444444444444444444444432 23333333333333 3 4444554444444432 3344444
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010229 258 IIDTFGK----YGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCK----AGDVAKALELFTQMQE 315 (514)
Q Consensus 258 li~~~~~----~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 315 (514)
|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|++..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4444443 44555555555554443210 013444444444444 4455555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-09 Score=84.16 Aligned_cols=143 Identities=8% Similarity=-0.076 Sum_probs=90.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010229 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445677777777777765431 1234456667777777788888888887777764 456677777777777777777
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+|...|++..+..+ -+...|..+...|.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 77777777776543 3456677777777777776655544 3555554221 4455555545544444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-08 Score=98.65 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=102.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 010229 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (514)
.|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367788888888776653 3456777788888888888888888888887764 44567777888888888888888888
Q ss_pred HHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHHc
Q 010229 170 LMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GMWKKAVGIVEEIREM 246 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 246 (514)
|++..+... .+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888777543 4566777888888888888888888888777632 2566777777777777 8888888888887766
Q ss_pred C
Q 010229 247 G 247 (514)
Q Consensus 247 ~ 247 (514)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=83.70 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=84.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH
Q 010229 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQGLC 408 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 408 (514)
..+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++..... +...+..+... +...+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhccc
Confidence 33444455555555555444332 22344445555555555555555555555443321 22222211111 1111122
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010229 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
..|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 23566666666542 3346677777777777788888887777777654432 345677777777777887777777776
Q ss_pred HH
Q 010229 488 ME 489 (514)
Q Consensus 488 m~ 489 (514)
..
T Consensus 170 al 171 (176)
T 2r5s_A 170 QL 171 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-08 Score=89.68 Aligned_cols=198 Identities=6% Similarity=-0.045 Sum_probs=96.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010229 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
.|++++|.+++++..+... . .+.. .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4556666666666554311 0 0112 45666666665544 345666677777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 010229 274 VFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 274 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77665432 1000 1235666666666777777777777665432 1000 12344445555555 66666666
Q ss_pred HHHHHHhcCCCC-----cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCCHHHHHH
Q 010229 344 NFENMKDRGHGK-----IGAIYAILVDIYGQYGRFRDPEECIAALKLEGL----QPS-GSMFCILANAYAQQGLCEQTVK 413 (514)
Q Consensus 344 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~a~~ 413 (514)
.+++..+..... ...++..+...|.+.|++++|...|++...... .+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 665554321000 123444455555555555555555555443210 000 1123333334444455555555
Q ss_pred HHHHhh
Q 010229 414 VLQLME 419 (514)
Q Consensus 414 ~~~~~~ 419 (514)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-07 Score=81.39 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=119.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----Hh
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RF 149 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~ 149 (514)
..+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345566778889999999999999998763 32 3578888899999999999999999998864 332 13
Q ss_pred HHHHHHHHHh------------------cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 150 YNILLRGFLK------------------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 150 ~~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
+-.+..++.+ .|++++|...|+++.+..+ -+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHH---
Confidence 4444444443 3556666666666665422 1111221111000 000000
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010229 212 GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 212 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
......+...+.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778889999999999999887632111 2567888899999999999999999888763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-08 Score=88.56 Aligned_cols=162 Identities=7% Similarity=-0.029 Sum_probs=69.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHH-HHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE-ILL 189 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li 189 (514)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33444455555555555555555555555443 2344455555555555555555555555544322 2221111 111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 010229 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 268 (514)
..+...++.++|...+++...... .+...+..+...+...|++++|...++++++..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 123333444444444444443321 133344444444444444444444444444332110 123334444444444444
Q ss_pred HHHHHHHH
Q 010229 269 VEALEVFE 276 (514)
Q Consensus 269 ~~A~~~~~ 276 (514)
++|...|+
T Consensus 272 ~~a~~~~r 279 (287)
T 3qou_A 272 DALASXYR 279 (287)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 44443333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-08 Score=88.23 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL-ANA 401 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~ 401 (514)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.... |+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 334444445555555555555555555543 3344555555555555666666666655554432 232222111 122
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcch
Q 010229 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHK 480 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 480 (514)
+...++.++|.+.+++..... +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 444555555666666665542 3455666666677777777777777777666543321 24456666777777777777
Q ss_pred HHHHHHHHH
Q 010229 481 VPEIYKQME 489 (514)
Q Consensus 481 a~~~~~~m~ 489 (514)
|...+++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=81.53 Aligned_cols=140 Identities=10% Similarity=-0.084 Sum_probs=69.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010229 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
+...|++++|++.++...... +.+...+-.+...|.+.|++++|.+.|++..+..+ .+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 334455566666655554321 11233344455556666666666666666555432 3455555555555556666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI-VEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
+..|++..+.... +..++..+...+.+.|++++|.+. +++..+.. +.+..+|......+...
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 6555555554221 344555555555555555443332 34444432 22344444444444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-07 Score=79.60 Aligned_cols=187 Identities=6% Similarity=0.006 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH--HHHH
Q 010229 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY-P-DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG--AIYA 361 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 361 (514)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...++.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888999999999999998874321 1 1356777888899999999999999998876533221 2444
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-H------------
Q 010229 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-V------------ 428 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~------------ 428 (514)
.+..++.+.+.. .+. .|..+...+...|++++|...|+++.+. .|+. .
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444455432100 000 0111111222233444444444444433 1111 1
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010229 429 -----MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 429 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 113456778899999999999999987533211 256888899999999999999999988875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-07 Score=86.40 Aligned_cols=225 Identities=10% Similarity=0.004 Sum_probs=113.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010229 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
.|++++|.+++++..+.. +.. +.. .++++.|...|.++ ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467888888888776531 110 011 34555555554443 233445555555555
Q ss_pred HHHHHHHcC----CC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHH
Q 010229 169 LLMVMEDMG----IC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 169 ~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
.|.+..+.. -. .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 555443321 00 01234555555555566666666555554332 1110 12345555555655 66666666
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 010229 239 IVEEIREMGLSL-----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNSLIRWHCKAGDVAKALE 308 (514)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 308 (514)
.|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666655421000 1345666666777777777777777665542 11111 1245555566666677777777
Q ss_pred HHHHHHHCCCC--CC--HHHHHHHHHHHHccCCHHHHHH
Q 010229 309 LFTQMQEQGFY--PD--PKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 309 ~~~~m~~~g~~--p~--~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
.|++.. .... .. ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777766 3211 11 12333444444 4556555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=94.53 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=118.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH
Q 010229 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 45678899999999999999999999999988654 4678899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 010229 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---GELVEALEVFEKMQQE 281 (514)
Q Consensus 205 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 281 (514)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887432 67888899999999999999999999998875 45678889999999999 9999999999998876
Q ss_pred C
Q 010229 282 S 282 (514)
Q Consensus 282 ~ 282 (514)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.7e-07 Score=77.69 Aligned_cols=130 Identities=11% Similarity=-0.093 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+..+...+.+.|++++|++.|++.. .|+...|..+...+...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567778889999999999999874 5688899999999999999999999999998865 557788999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCc---------------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010229 159 KKGLLGLGSRLLMVMEDMGICR---------------NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 213 (514)
+.|++++|.+.|++..+..... ....+..+...+.+.|++++|.+.|++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998854311 126788888889999999999999999887643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.8e-06 Score=75.36 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
++.+-....+.+..++|+++++++...+ +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333333444555678999999998875 445667888888888888 5899999999998865 567778888777777
Q ss_pred hc-C-ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010229 159 KK-G-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--------DTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 159 ~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+. + ++++++++++++.+... .|...|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 78888888888887654 56777777666665555555 677777777766433 5566666665555
Q ss_pred ccCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010229 229 DNGM-------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266 (514)
Q Consensus 229 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 266 (514)
+.+. ++++++.+++.+... +-|...|+-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 5554 466666666666553 345666655554444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-06 Score=76.96 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=84.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCC-CcCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----hhhHHHH
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGI-CRNQ----ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-N----SFVYGKV 223 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~l 223 (514)
+..+...|++++|.+.+++..+... .|+. ..+..+...+...+++++|+..|++........ + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666777777777766665321 1111 122234555555666777777776666532221 2 1245666
Q ss_pred HHHHHccCChHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREM-----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNS 292 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 292 (514)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 1111 1235555666666666666666666554421 11111 345555
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHH
Q 010229 293 LIRWHCKAGD-VAKALELFTQMQ 314 (514)
Q Consensus 293 li~~~~~~g~-~~~A~~~~~~m~ 314 (514)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5566666663 466666655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-06 Score=77.43 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=99.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHH
Q 010229 329 ISCLGELGKWDVIKKNFENMKDRGH-GKI----GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCIL 398 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 398 (514)
+..+...|++++|...++...+... .++ ...+..+...+...+++++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666666554321 111 112334555555666777777777776653221 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPE-----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD-LVTYST 467 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 467 (514)
...|...|++++|...++++.+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777888888888777776631 11222 236778888888888888888888877532 22222 557788
Q ss_pred HHHHHHcCCC-cchHHHHHHHHHh
Q 010229 468 LMKAFIRAKK-FHKVPEIYKQMES 490 (514)
Q Consensus 468 l~~~~~~~g~-~~~a~~~~~~m~~ 490 (514)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888885 4888888887763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-07 Score=70.54 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=75.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456677778888888888888888877764 4567778888888888888888888888887764 45567777778888
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 010229 158 LKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~ 177 (514)
...|++++|.+.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888777754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-07 Score=73.66 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=95.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456777788888899999999988887764 4467778888888888888888888888888764 4566777888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYE--ILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
+...|++++|.+.|++..+... .+...+. .....+...|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888777543 2333443 33333666777777777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-07 Score=69.04 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566777777778888888888888777653 3456677777777777788888888777777654 3456667777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
+...|++++|.+.|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 7777777777777777766432 2333444443333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=78.01 Aligned_cols=119 Identities=7% Similarity=0.063 Sum_probs=75.3
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA-FGVAGKY--KE 445 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 445 (514)
..|++++|...+++...... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45666777777776665532 355666667777777777777777777766542 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|...++++.+.... +...+..+..++...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777664332 456666677777777777777777777766
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-07 Score=69.73 Aligned_cols=121 Identities=9% Similarity=-0.043 Sum_probs=95.4
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
...+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 34456788889999999999999999999998764 4467888888899999999999999999988864 456778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 196 (514)
+..++.+.|++++|.+.|++..+... .+...+..+...+...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 88888899999999999988877543 23455555655555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-05 Score=71.75 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhhHHHHH
Q 010229 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLL 170 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~ 170 (514)
++.+|...++.+.+.+ +..++|+++++.++... +.+..+|+.--..+...| +++++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666666665543 33468999999999875 556677888888888888 599999999
Q ss_pred HHHHHcCCCcChHhHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH--------HHHHHH
Q 010229 171 MVMEDMGICRNQETYEILLDYHVNA-G-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--------KAVGIV 240 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~ 240 (514)
+.+....+ .+..+|+.-...+.+. + ++++++++++.+.+...+ |..+|+.-...+.+.|.++ ++++.+
T Consensus 113 ~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 113 NEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 99998765 5778888888777776 6 889999999999876433 5666665555555555555 788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010229 241 EEIREMGLSLDRQIYNSIIDTFGKYGE-------LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (514)
+++++.+ +.|...|+.....+.+.+. ++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8888775 4577888888777777765 677888877776653 2366677766655555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.1e-07 Score=76.21 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010229 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYA 403 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (514)
.+..+...+...|++++|...+++.. .++..++..+...|.+.|++++|...+++..... +.+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666777888888888887763 4466777788888888888888888888877664 235667777778888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010229 404 QQGLCEQTVKVLQLMEPEGIEPNL----------------VMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (514)
..|++++|.+.|++..+.. +.+. ..+..+..+|...|++++|.+.|+++.+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888777653 2222 5677777788888888888888888776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-06 Score=74.43 Aligned_cols=164 Identities=7% Similarity=-0.007 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---Cc--H
Q 010229 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP------KIFITIISCLGELGKWDVIKKNFENMKDRGHG---KI--G 357 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 357 (514)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677777777777777776654221 11 11222334445556666666666665542111 11 2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCC-C
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAALKL---EGLQ-P--SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG----IEP-N 426 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~ 426 (514)
.+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|.+.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455555555555666666555555541 1100 0 01344455555555555555555555443321 000 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 010229 427 LVMLNVLINAFGVAGKYKEA-LSVYHLM 453 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A-~~~~~~m 453 (514)
..+|..+..+|.+.|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555555555555 4444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-07 Score=72.15 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|+++.+..+. ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 45555666666777777777777666653 335666667777777777777777777777664333 4556666777777
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 474 RAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
+.|++++|.+.|++..+ +.||..
T Consensus 116 ~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCHH
Confidence 77777777777777766 445553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=82.72 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 455666667777777777777777776653 3356667777777777777777777777776653 34556666666777
Q ss_pred HhcCChhhHHHHHHHHHH
Q 010229 158 LKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~ 175 (514)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-07 Score=74.79 Aligned_cols=122 Identities=7% Similarity=0.012 Sum_probs=99.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-HHhcCCh--h
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FLKKGLL--G 164 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 164 (514)
...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45689999999999988764 5577889999999999999999999999998865 4567788888888 7788998 9
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010229 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
+|...|++..+..+ .+...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999988654 457788888999999999999999999988874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-07 Score=76.20 Aligned_cols=156 Identities=14% Similarity=-0.048 Sum_probs=87.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHHHHHHHHHhcCC
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~ 162 (514)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 1234567777888888888888888888877651 11 1223456666777777777
Q ss_pred hhhHHHHHHHHHHc----CCCc--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccC
Q 010229 163 LGLGSRLLMVMEDM----GICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNG 231 (514)
Q Consensus 163 ~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g 231 (514)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++....... .+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765543 1011 1334555666666666666666666665432100 01 112334444555555
Q ss_pred ChHHHHHHHHHHH
Q 010229 232 MWKKAVGIVEEIR 244 (514)
Q Consensus 232 ~~~~a~~~~~~~~ 244 (514)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-06 Score=67.36 Aligned_cols=97 Identities=8% Similarity=-0.134 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
..+......+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345566667777777777777777776654 44566667777777777777777777777666543 3455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010229 193 VNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~ 211 (514)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6777777777776666655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-06 Score=68.42 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44567777778888888888888888877653 3466777777888888888888888888877754 345667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
.+.+.|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777888888877777776543 345556666666655554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-06 Score=70.22 Aligned_cols=128 Identities=7% Similarity=-0.005 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345566666777777777777777776653 34566666667777777777777777776666432 3455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHccCChHHHHHHHHHH
Q 010229 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 243 (514)
...|++++|...|++..+.... +...+.. ....+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666654221 2233322 222244455555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.9e-06 Score=74.85 Aligned_cols=167 Identities=11% Similarity=0.019 Sum_probs=126.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---CCC--HH
Q 010229 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKI-----GAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPS--GS 393 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 393 (514)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778899999999999998887543221 12344566777888999999999999875422 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-CH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPN-----LVMLNVLINAFGVAGKYKEALSVYHLMKDIG----ISP-DL 462 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 462 (514)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|++.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 00122 2588899999999999999999999986431 111 15
Q ss_pred HHHHHHHHHHHcCCCcchH-HHHHHHHHh
Q 010229 463 VTYSTLMKAFIRAKKFHKV-PEIYKQMES 490 (514)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 490 (514)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-07 Score=71.78 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666777777778888888777777664 4456777777777777777777777777777754 4456677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 010229 157 FLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~ 177 (514)
|.+.|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-06 Score=65.75 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=60.6
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4456666666667777777777777666543 34455666666666666666666666666665432 345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 010229 192 HVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~ 211 (514)
+...|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-05 Score=69.39 Aligned_cols=137 Identities=9% Similarity=0.038 Sum_probs=83.0
Q ss_pred HhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 88 CKLGDID-EAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 88 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
.+.|+++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556665 7788888887764 3344556654444433332 466777777776654 4566666666666
Q ss_pred HHhcCC--hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010229 157 FLKKGL--LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+.+.|+ +++++.+++++.+..+ .|...|+.-...+...|. ++++++.++++.+..+. |...|+.....+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 666663 6677777777776554 566666666666666666 46677777777665433 5555555444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-06 Score=79.31 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=77.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667777888888888888888888888764 34677788888888888888888888888877543 45667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010229 191 YHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~ 211 (514)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=77.55 Aligned_cols=187 Identities=10% Similarity=-0.078 Sum_probs=100.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 010229 89 KLGDIDEAMALLAQMQALGFHPSSISYASL-------IEALASVGRTLEADAIFQEMVCFGFNPK--------------- 146 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 146 (514)
+.++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788888888888888764 4456677777 4566665555666555554443 2222
Q ss_pred -------hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--h
Q 010229 147 -------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--S 217 (514)
Q Consensus 147 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~ 217 (514)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334455666667777777666665433 322244444445666666666666665332221 000 1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010229 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2344455555566666666666665553322122 223444445555555555665555555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-06 Score=65.49 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010229 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...+..+...+...|++++|...+++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34455555555666666666666666555432 244555556666666666666666666665542 3345556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010229 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
+...|++++|.+.|++..+.... +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66666666666666666554322 445555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.5e-07 Score=72.77 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010229 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...+..+...+.+.|++++|...|++....+. .+...|..+..+|...|++++|.+.|++..... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 33444445555555555555555555554432 244445555555555555555555555554432 2234444555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010229 437 FGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~ 455 (514)
|...|++++|.+.|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-06 Score=73.18 Aligned_cols=132 Identities=11% Similarity=-0.017 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHH
Q 010229 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAF 437 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~ 437 (514)
...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3344555556666666666666555432 332233444445666666666666666444321 110 22455566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010229 438 GVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 666677777666666654322132 23455555566666666677766666666 3454
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=74.24 Aligned_cols=86 Identities=10% Similarity=-0.060 Sum_probs=43.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-cChHhHHHHHHHHHhcCC
Q 010229 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGR 197 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~ 197 (514)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345667777664444432 11123455666666666666666666666665541 111 123344555555555555
Q ss_pred HHHHHHHHHHHH
Q 010229 198 LDDTWLIINEMR 209 (514)
Q Consensus 198 ~~~A~~~~~~m~ 209 (514)
+++|.+.+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=79.90 Aligned_cols=131 Identities=8% Similarity=-0.095 Sum_probs=78.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------hHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010229 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--------------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|...|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666666666666666655431111 3566666666666666666666666666654
Q ss_pred CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH-HHHHHHHH
Q 010229 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA-VGIVEEIR 244 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 244 (514)
. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.+++ ...++.|.
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35566666666666677777777776666665322 455566666666666666666 33455544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.8e-07 Score=71.32 Aligned_cols=94 Identities=16% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010229 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++..+..+ .+...|..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3334444444444444444444444432 23344444444444444444444444444444322 233344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010229 195 AGRLDDTWLIINEMRS 210 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~ 210 (514)
.|++++|...|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-06 Score=66.12 Aligned_cols=99 Identities=7% Similarity=-0.090 Sum_probs=63.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...|..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 44556666667777777777777777766543 33556666666666667777777777666665432 34556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010229 191 YHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~ 211 (514)
.+...|++++|.+.|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-06 Score=79.59 Aligned_cols=123 Identities=10% Similarity=-0.150 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010229 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKI--------------GAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
...+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666777777776666665542221 2444444444444455555554444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010229 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (514)
. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 233444444444444444444444444444432 22334444444444444444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=65.01 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=71.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 356667777778888888888888877664 4456777777778888888888888888777764 44566777777777
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 010229 158 LKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~ 176 (514)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-06 Score=66.25 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cC----HHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PD----LVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 467 (514)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35556666777777777777777766653 335666777777777777777777777776543111 11 135666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 010229 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 502 (514)
+..++...|++++|++.|++..+ ..||..+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 66777777777777777777766 4566554433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.6e-06 Score=62.44 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=68.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777777788888888888776653 3456667777777777777777777777777654 34566667777777
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 010229 158 LKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~ 177 (514)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-06 Score=64.37 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444555556666666666666655542 334555666666666666666666666666554322 4555666666666
Q ss_pred cCCCcchHHHHHHHHHh
Q 010229 474 RAKKFHKVPEIYKQMES 490 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (514)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00027 Score=64.13 Aligned_cols=188 Identities=7% Similarity=-0.026 Sum_probs=125.0
Q ss_pred HhcCChH-HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 123 ASVGRTL-EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL----------LGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 123 ~~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
.+.|.+. +|+.+++.+...+ +.+..+|+.--..+...+. +++++.+++.+....+ .+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455554 7899999998765 4455566665444444333 5778888888877654 577788887777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 010229 192 HVNAG--RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM-WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--- 265 (514)
Q Consensus 192 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 265 (514)
+...+ .+++++.+++.+.+.... |..+|+.-...+...|. ++++++.++.+++.+ +.|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 478888888888887443 66667666666677777 588888888888775 45777777766655544
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHH
Q 010229 266 -----------GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA-----------GDVAKALELFTQMQE 315 (514)
Q Consensus 266 -----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 315 (514)
+.++++++.+++..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677777777766543 23566666444444333 235566666666665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=64.94 Aligned_cols=114 Identities=12% Similarity=0.157 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cC----HHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PD----LVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 467 (514)
.|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555556666666666666666665542 335556666666666667777777666666543211 11 455666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 010229 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 510 (514)
+..++...|++++|.+.+++..+ ..|+......+.......
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 66666777777777777777666 345555555554444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-06 Score=66.47 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3456667778888999999999999988764 4577888888889999999999999999988875 4567778888888
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 010229 157 FLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~ 176 (514)
+...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-06 Score=63.05 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILL 154 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li 154 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445567777777888888888888777654 3456677777777777778888887777777653 33 466677777
Q ss_pred HHHHhc-CChhhHHHHHHHHHHcC
Q 010229 155 RGFLKK-GLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~-g~~~~A~~~~~~~~~~~ 177 (514)
.++.+. |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=67.92 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 010229 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (514)
.+..+...+.+.|++++|...|+++...+. .+...|..+..+|...|++++|...|++..... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344444455555555555555555554432 244445555555555555555555555555432 223444455555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010229 439 VAGKYKEALSVYHLMKD 455 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~ 455 (514)
..|++++|.+.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=61.00 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34445555556666666666666555442 234555556666666666666666666666554322 4555566666666
Q ss_pred cCCCcchHHHHHHHHHh
Q 010229 474 RAKKFHKVPEIYKQMES 490 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (514)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=65.52 Aligned_cols=99 Identities=12% Similarity=-0.057 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 010229 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 435 (514)
+...+..+...+.+.|++++|...|++..+... .+...|..+...|...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455677777777788888888888887776642 356677777777778888888888887777653 335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 010229 436 AFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~ 456 (514)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 788888888888888777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=62.34 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=35.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555556666666666666666655543 33455555555566666666666665555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=8.2e-06 Score=64.11 Aligned_cols=97 Identities=6% Similarity=-0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (514)
...|..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+.... +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3444445555555555555555555544432 223445555555555555555555555555543222 34455555555
Q ss_pred HHcCCCcchHHHHHHHHHh
Q 010229 472 FIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~ 490 (514)
+...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.5e-06 Score=69.23 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----------------ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
...|..+...+.+.|++++|++.|++..+.. +.+. ..|..+..++...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457777888888999999999999888753 1122 5666667777777777777777777766
Q ss_pred cCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010229 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 141 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 53 34556666677777777777777777777665432 24455555555555555444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=65.61 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=84.4
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345678888888999999999999999988774 4477888888899999999999999999988875 45677888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88999999999999998887753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.8e-06 Score=61.35 Aligned_cols=99 Identities=7% Similarity=0.019 Sum_probs=63.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc--ChHhHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEIL 188 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 188 (514)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+... . +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 34456666666777777777777777766653 34555666666666677777777777776666432 2 35566666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHc
Q 010229 189 LDYHVNA-GRLDDTWLIINEMRSK 211 (514)
Q Consensus 189 i~~~~~~-g~~~~A~~~~~~m~~~ 211 (514)
...+... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=68.44 Aligned_cols=97 Identities=15% Similarity=0.005 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
..|..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 567777778888888888888888887753 446777888888888888888888888888765432 566777777777
Q ss_pred HcCCCcchHH-HHHHHHHhC
Q 010229 473 IRAKKFHKVP-EIYKQMESS 491 (514)
Q Consensus 473 ~~~g~~~~a~-~~~~~m~~~ 491 (514)
...++.+++. ..+..|...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777666665 455555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-05 Score=62.30 Aligned_cols=100 Identities=14% Similarity=0.014 Sum_probs=83.4
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
.+...|..+...+.+.|++++|++.|++..+. .|+ ...|..+...+...|++++|+..+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667888889999999999999999999876 455 6778888888999999999999999988764 4467778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010229 151 NILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
..+..++...|++++|.+.|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888888999999999988887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=62.61 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44556667777777777777777777766653 3446666777777777777777777777766654 344556666666
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 010229 156 GFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~ 175 (514)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66667777777666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=7e-06 Score=63.05 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667788889999999999999998874 4578888899999999999999999999998875 456778888889999
Q ss_pred hcCChhhHHHHHHHHHHc
Q 010229 159 KKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~ 176 (514)
+.|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-06 Score=63.98 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=66.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHhHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (514)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356667777777888888888888777654 44566777777777777888888877777765431 111 45566
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 010229 152 ILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
.+..++.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.1e-05 Score=73.52 Aligned_cols=196 Identities=10% Similarity=-0.053 Sum_probs=119.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 010229 84 IQYCCKLGDIDEAMALLAQMQALGFHPS----------------SISYASLIEALASVGRTLEADAIFQEMVCFG-FNPK 146 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~ 146 (514)
...+.+.|++++|++.|.++.+..-... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567888999999999999987632111 1236778888889999999988888776521 1111
Q ss_pred h----HhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 010229 147 L----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-- 215 (514)
Q Consensus 147 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-- 215 (514)
. .+.+.+...+...|+.+.|.++++..... +..+ -..++..+...|...|++++|..++.+....-...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333344567778887777766432 2111 23466677777777888888887777765431111
Q ss_pred ---ChhhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 216 ---NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM--GLSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 216 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
...++..+++.|...|++++|..++++.... ....+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1345666667777777777777777765432 11111 2344555555666666766666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-06 Score=63.62 Aligned_cols=93 Identities=5% Similarity=-0.092 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010229 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334455666667777777766666542 335566666666677777777777777766664332 455666666666777
Q ss_pred CCcchHHHHHHHHHh
Q 010229 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.6e-05 Score=60.51 Aligned_cols=96 Identities=6% Similarity=-0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 010229 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS----GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 432 (514)
...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444444455555555555544433 222 3344444444555555555555555444431 223444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010229 433 LINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+..++...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-05 Score=60.47 Aligned_cols=90 Identities=9% Similarity=-0.019 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD---LVTYSTLMKAF 472 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~ 472 (514)
...+...|++++|.+.|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344455555555555555555432 1111 34455555555666666666666655543221 2 34455555555
Q ss_pred HcCCCcchHHHHHHHHHh
Q 010229 473 IRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~ 490 (514)
...|++++|...++++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0001 Score=70.64 Aligned_cols=160 Identities=5% Similarity=-0.014 Sum_probs=72.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCC
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLSLD----------------RQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPD 286 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~ 286 (514)
.+.+.+.|++++|++.|..+++...... ...+..+...|.+.|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445666777777777777766532111 1124455555666666666666555544310 0111
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----C
Q 010229 287 IV----TWNSLIRWHCKAGDVAKALELFTQMQE----QGFYPD-PKIFITIISCLGELGKWDVIKKNFENMKDR-----G 352 (514)
Q Consensus 287 ~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 352 (514)
.. ..+.+-..+...|++++|..++.+... .+..+. ..++..+...+...|++++|..++..+... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111112222234555555555554432 111111 233444455555555555555555544321 0
Q ss_pred CCCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010229 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
.+....++..++..|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1111234444445555555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.3e-05 Score=57.16 Aligned_cols=95 Identities=16% Similarity=-0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHH
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILL 154 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li 154 (514)
..+...+.+.|++++|++.|+++.+.. +.+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345667778888888888888887753 2223 467777778888888888888888877754 223 45566777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.++.+.|++++|...|+.+.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777888888888887777643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-06 Score=64.11 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred hcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (514)
..|++++|+..|++..+.+. +.+...+..+...|...|++++|.+.|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777788888887776531 1234566677777777788888888887777653 33566777777777777888888
Q ss_pred HHHHHHHHHC
Q 010229 447 LSVYHLMKDI 456 (514)
Q Consensus 447 ~~~~~~m~~~ 456 (514)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8877777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-05 Score=63.04 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4444555555555555555555555443221 344455555555555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.8e-06 Score=79.10 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=92.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010229 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988874 4468889999999999999999999999999875 456788888999999999999
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHH--HHhcCCHHHHHHHHH
Q 010229 165 LGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIIN 206 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 206 (514)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887643 234455555555 777888888888887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-05 Score=62.37 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=60.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----h
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFH-PS----SISYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----L 147 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~ 147 (514)
.++..+...+...|++++|++.+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677777888888888888888877653100 11 13566677777777888888877777654210 011 2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010229 148 RFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
..+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555566666666666666665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=62.44 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 254 IYNSIIDTFGKYGELVEALEVFEKMQQE----SIR-PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444555555555555555444321 000 012234444445555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.9e-05 Score=72.89 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=72.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---------------SISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356777788888888888888888887652 112 3555666666666666666666666666543
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010229 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
+.+...|..+..+|...|++++|...|++..+... .+...+..+...+.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666655432 23345555555555555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=71.04 Aligned_cols=96 Identities=6% Similarity=-0.113 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG---------------FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF 143 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 143 (514)
.|..+...+.+.|++++|++.|++..+.- .+.+..+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 36667777778888888888888776510 01123344444555555555555555555555432
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010229 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22344444445555555555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=60.95 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010229 89 KLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
..|++++|+..|++..+.+ -+.+...+..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887753 12345667778888888888888888888887765 44567777788888888888888
Q ss_pred HHHHHHHHHc
Q 010229 167 SRLLMVMEDM 176 (514)
Q Consensus 167 ~~~~~~~~~~ 176 (514)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=8e-05 Score=60.41 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GF----------HPSSISYASLIEALASVGRTLEADAIFQEMV 139 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 139 (514)
...|......+.+.|++++|+..|++..+. +. +.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777888999999999999999988764 00 1123456666667777777777777777776
Q ss_pred HcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010229 140 CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 140 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445566666677777777777777777766664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-05 Score=76.46 Aligned_cols=115 Identities=9% Similarity=0.008 Sum_probs=48.4
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010229 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
+.|++++|.+.+++..+... .+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444444321 134444444445555555555555555544432 2234444445555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHH--HHcCCCcchHHHHHH
Q 010229 449 VYHLMKDIGISPDLVTYSTLMKA--FIRAKKFHKVPEIYK 486 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 486 (514)
.|+++.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554443211 12223333222 444445555554444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-05 Score=72.66 Aligned_cols=124 Identities=10% Similarity=-0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010229 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKI--------------GAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
...+..+...+.+.|+++.|...|+++++...... ..+|..+..+|.+.|++++|...+++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566667777788888888888887776532221 3455555555555566666666555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010229 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
. .+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.++.+++.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 244455555555555555555555555555432 223344555555555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00055 Score=67.77 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=114.2
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 89 KLGD-IDEAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 89 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+.|+ .++|++.++++.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 457788888888764 3455667776666666666 788888888887765 55667777777777
Q ss_pred HhcC--ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----
Q 010229 158 LKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---- 230 (514)
Q Consensus 158 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---- 230 (514)
.+.| +++++.+.++++.+... .|..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 7777 56888888888877655 56777777777777777 777777777777765433 566666655554442
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010229 231 ----------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 231 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
+.++++++.+++.+... +-+...|+-+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33456666666655543 3355555555555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0001 Score=58.45 Aligned_cols=60 Identities=23% Similarity=0.096 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--------S-----ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667777788888888888777652 22 1 1555566666666666666666665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00029 Score=55.86 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=65.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC
Q 010229 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPN-------------LVMLNVLINAFGVAGKYKEALSVYHLMKDI-----GIS 459 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 459 (514)
....+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+. .+.
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555443 222 236777777788888888888887777763 113
Q ss_pred cC-HHHH----HHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 010229 460 PD-LVTY----STLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQILQ 504 (514)
Q Consensus 460 p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 504 (514)
|+ ...| .....++...|++++|+..|++..+ .|+.+......-.+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 43 4466 7777788888888888888887764 35666654444333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=4e-05 Score=70.80 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010229 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 401 (514)
...+..+...+.+.|++++|...|++.++.. ++.. .+...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556666777778888888888888877653 2211 1222233333322221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCCcch
Q 010229 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA-FIRAKKFHK 480 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 480 (514)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888763 446788889999999999999999999988764322 34455555544 234566778
Q ss_pred HHHHHHHHHh
Q 010229 481 VPEIYKQMES 490 (514)
Q Consensus 481 a~~~~~~m~~ 490 (514)
+.++|++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=71.53 Aligned_cols=147 Identities=9% Similarity=-0.001 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3455555666667777777777766554 233221 111122222221110 125677777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCChHHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL-YRDNGMWKKAV 237 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~ 237 (514)
+.|++++|...+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877776543 45667777777888888888888888777654211 33444444443 23345666777
Q ss_pred HHHHHHHHc
Q 010229 238 GIVEEIREM 246 (514)
Q Consensus 238 ~~~~~~~~~ 246 (514)
+.|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=67.90 Aligned_cols=138 Identities=7% Similarity=-0.028 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+..+...+.+.|++++|++.|++..+.- ++.. .....+.+.+ .. +.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGAK----LQ----PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 46677788888999999999998887520 0000 0000000000 00 023456666666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010229 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
+.|++++|++.+++..+... -+...+..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777665532 245566666667777777777777777766653 3355566666666666666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0021 Score=63.68 Aligned_cols=173 Identities=10% Similarity=-0.094 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-
Q 010229 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGK----------WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG- 371 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 371 (514)
.++|++.++++.+.... +...|+.--.++...++ ++++...++.+.+.. +.+..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45667777777764221 33444444444444444 778888888888765 456777777777777888
Q ss_pred -CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc---------
Q 010229 372 -RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA--------- 440 (514)
Q Consensus 372 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------- 440 (514)
+++++.+.++++.+.+. -+...|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 55888888888888764 36777887777777788 8889999998888775 44777888777776663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcch
Q 010229 441 -----GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480 (514)
Q Consensus 441 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (514)
+.++++++.++++....+. |...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5678999999998876544 67788888777777776544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00094 Score=52.30 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK- 299 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 299 (514)
..|...+..++|.++|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333444444555555444433 34444444444444 445555555555544442 34444444444444
Q ss_pred ---cCChHHHHHHHHHHHHCC
Q 010229 300 ---AGDVAKALELFTQMQEQG 317 (514)
Q Consensus 300 ---~g~~~~A~~~~~~m~~~g 317 (514)
.+++++|..+|++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=58.51 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=67.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------hH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LR 148 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~ 148 (514)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34567778888888899999999988887764 4467788888888888888888888888888753 43 44
Q ss_pred hHHHHHHHHHhcCChhhHHHHHH
Q 010229 149 FYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
.+..+..++...|+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555566666666655554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0007 Score=53.04 Aligned_cols=86 Identities=10% Similarity=-0.045 Sum_probs=40.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc--
Q 010229 401 AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR-- 474 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 474 (514)
.|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 3333344444555555444433 33444444444444 445555555555554432 33444444444444
Q ss_pred --CCCcchHHHHHHHHHhCC
Q 010229 475 --AKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 475 --~g~~~~a~~~~~~m~~~g 492 (514)
.++.++|.+++++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 445555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=7e-05 Score=56.03 Aligned_cols=94 Identities=14% Similarity=-0.033 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC------HHHH
Q 010229 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD------LVTY 465 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~ 465 (514)
...|..+...+...|++++|.+.|++..+.. +.+...|..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4456667777778888888888888777653 446677778888888888888888888888764322 2 4456
Q ss_pred HHHHHHHHcCCCcchHHHHHHH
Q 010229 466 STLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
..+..++...|+.++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6666677777777666554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=68.87 Aligned_cols=88 Identities=15% Similarity=0.010 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---C---CCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCC-hHhHHH
Q 010229 87 CCKLGDIDEAMALLAQMQALG---F---HPS-SISYASLIEALASVGRTLEADAIFQEMVC-----FGF-NPK-LRFYNI 152 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~---~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~-~~~-~~~~~~ 152 (514)
+..+|++++|+.++++..+.. + .|+ ..+++.+..+|...|++++|..++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335566666666666554321 1 111 23556666666666666666666665543 120 111 234455
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 010229 153 LLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~ 174 (514)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00042 Score=52.21 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010229 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 374 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
++|.+.|++..+... .+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356666666665432 345566666666777777777777777666543 334556666667777777777777777666
Q ss_pred HH
Q 010229 454 KD 455 (514)
Q Consensus 454 ~~ 455 (514)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00055 Score=48.73 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777776653 3456667777777777777777777777776653 3344555555554
Q ss_pred HHh
Q 010229 157 FLK 159 (514)
Q Consensus 157 ~~~ 159 (514)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=53.29 Aligned_cols=79 Identities=13% Similarity=-0.036 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010229 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
+|++.|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777776654 4466777788888888888888888888887764 4456677777888888888888888887776
Q ss_pred H
Q 010229 175 D 175 (514)
Q Consensus 175 ~ 175 (514)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=68.39 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-
Q 010229 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IRPD-IVTWNSLIRWHCKAGDVAKALELFTQMQE-----QGFY- 319 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~- 319 (514)
.+++.|...|...|++++|..++++..+. | -.|+ ..+++.|...|...|++++|+.++++..+ .|..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555554321 1 1111 23455555556666666666665555442 1211
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010229 320 PD-PKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 320 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
|+ ..+...+-.++...+.+++|+.++..+.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12223344444555556666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=56.44 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=71.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT----------LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 56688999999999998875 56788899888888888765 48888888888865 44667888888888
Q ss_pred HhcC-----------ChhhHHHHHHHHHHcCCCcChHhH
Q 010229 158 LKKG-----------LLGLGSRLLMVMEDMGICRNQETY 185 (514)
Q Consensus 158 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~ 185 (514)
...| ++++|.+.|++..+.. |+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 7764 6777777777776643 444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=57.91 Aligned_cols=86 Identities=6% Similarity=-0.033 Sum_probs=49.1
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 010229 368 GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC----------EQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (514)
.+.+.+++|.+.++...+.+. .+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 344556666666666666542 3555666566666555443 36666666665542 22445666666666
Q ss_pred HHcC-----------CHHHHHHHHHHHHH
Q 010229 438 GVAG-----------KYKEALSVYHLMKD 455 (514)
Q Consensus 438 ~~~g-----------~~~~A~~~~~~m~~ 455 (514)
...| ++++|++.|+++.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 6553 56666666666655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00094 Score=47.49 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555544432 22344455555555555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00083 Score=49.11 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555566666666666666666666665543 22445566666666666666666666666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0027 Score=46.30 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 138 (514)
|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++.
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444332 222333444444444444444444444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0033 Score=45.04 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 425 PNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|...+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666665554433 56666666666664433 555666666666667777777777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.011 Score=53.75 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010229 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...|+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3455566665555555566666666666666543 4555555556666666666666666666665 455555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.042 Score=57.25 Aligned_cols=150 Identities=11% Similarity=0.204 Sum_probs=85.0
Q ss_pred HhcCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010229 193 VNAGRLDDTWL-IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 193 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+.-.. -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHH
Confidence 45677777765 44111 1122235666677777777777765532111 12334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8776544 2667888888888888888888888887643 233444444566666555544444443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHH
Q 010229 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (514)
+. ++....+|.+.|++++|.+++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 31 2233333444555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.011 Score=46.29 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010229 376 PEECIAALKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEP--NLVMLNVLINAFGVAGKYKEALSVY 450 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 450 (514)
+.+.|.+....+. ++..+...+..++++.+ +.++++.+|+...+.. .| +...+-.|.-+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3334443333332 34444444444444444 3334555555444432 12 2233334444445555555555555
Q ss_pred HHHHH
Q 010229 451 HLMKD 455 (514)
Q Consensus 451 ~~m~~ 455 (514)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.063 Score=48.94 Aligned_cols=48 Identities=10% Similarity=-0.126 Sum_probs=28.1
Q ss_pred CCCHhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010229 109 HPSSISYASLIEALA--SVG---RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 109 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+.+...|...+++.. ..+ +..+|+.+|++.++.. +-....|..+.-+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 556777777776554 223 3467888888888764 22334454444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.022 Score=40.95 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566778899999999999988764 44567 88888899999999999999999998864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.11 Score=54.07 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=96.7
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010229 85 QYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 85 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456788988877 55221 112233677788888899998887653211 113445678999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 010229 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (514)
++|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9998886543 4677899999999999999999999987742 334455555566666655555544
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010229 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
...|. ++....+|.+.|++++|.+++.+
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44431 22333344445555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.016 Score=54.91 Aligned_cols=85 Identities=8% Similarity=-0.139 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-CcC-hHhHHHHHHH
Q 010229 126 GRTLEADAIFQEMVCF---GFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CRN-QETYEILLDY 191 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li~~ 191 (514)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 01111 244555666666666666666666555432 21 122 3456666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010229 192 HVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~ 210 (514)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 6667777776666666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0073 Score=57.28 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010229 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555444321 1 0111 233444555555555555555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.012 Score=55.84 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=42.2
Q ss_pred cCChHHHHHHHHHHHHcC---CCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-Cc-ChHhHHHHHH
Q 010229 125 VGRTLEADAIFQEMVCFG---FNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CR-NQETYEILLD 190 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~li~ 190 (514)
.|++++|.+++++..+.. +.|+ ..+++.+...|...|++++|+.++++..+. |. .| ...+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 445555555555554311 1111 234455555555555555555555554422 11 11 2345566666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010229 191 YHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~ 209 (514)
.|...|++++|..++++..
T Consensus 380 ~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.3 Score=39.18 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=52.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010229 262 FGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 341 (514)
..+.|+++.|.++.+++. +...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566666666655541 556666666666666666666666665532 22333334445555554
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010229 342 KKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333331 33333344445555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.019 Score=54.43 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=45.3
Q ss_pred HhccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 010229 262 FGKYGELVEALEVFEKMQQES---IRPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQ-----GF-YPD-PKIFIT 327 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~ 327 (514)
+.+.|++++|+.++++..+.. ..|+ ..+++.+...|...|++++|+.++++..+. |. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444556666666665554321 1111 234555666666666666666666655421 11 111 234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 010229 328 IISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
+...|...|++++|..+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5566666666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.038 Score=39.62 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLV-MLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
...+...|++++|.+.+++..+.. +.+.. .|..+..+|...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556667777777776666542 33445 66666667777777777777777766543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.32 Score=36.62 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010229 219 VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
.+...++.+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444555555555555543221 234444555555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.11 Score=36.85 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010229 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
.++|..++++.++.. +.++.....+...+.+.|++++|...|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444433 23334444444444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.08 Score=38.61 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEG------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.-+..+...+...|+++.|...|+...+.- -.+....+..+..++.+.|++++|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455666666666666666666654420 022345566666666666666666666666655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.39 Score=36.20 Aligned_cols=137 Identities=17% Similarity=0.084 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 010229 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (514)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++.+-+ --|.. .+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHHHH
Confidence 45555556655555542 2444555555555555554444444444322 11111 12222222222
Q ss_pred HHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 010229 170 LMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (514)
+-.+- .+.......++.+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22211 2333444555556666666666666666432 2345556666666666666666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.18 Score=44.07 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CCh
Q 010229 93 IDEAMALLAQMQALGFHPS---SISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK-GLL 163 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~ 163 (514)
...|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666655 344 4466666666666 367777777777776654212355566666666663 666
Q ss_pred hhHHHHHHHHHHcCCC
Q 010229 164 GLGSRLLMVMEDMGIC 179 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~ 179 (514)
+.+.+.+++.....+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777766665444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.21 Score=43.60 Aligned_cols=92 Identities=7% Similarity=-0.032 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCH
Q 010229 128 TLEADAIFQEMVCFGFNPK---LRFYNILLRGFLK-----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRL 198 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 198 (514)
...|...+++..+. .|+ -..|..+...|.+ .|+.+.|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 354 4578888888887 488888888888888765433477777788877774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 010229 199 DDTWLIINEMRSKGFQ--LNSFVYG 221 (514)
Q Consensus 199 ~~A~~~~~~m~~~g~~--~~~~~~~ 221 (514)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888877655 5544333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.1 Score=38.01 Aligned_cols=65 Identities=9% Similarity=-0.092 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALG------FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
...+-.+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445567777888888888888888766531 1234556777777777777777777777777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0001 Score=68.41 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=80.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
+..|..|..+..+.+.+.+|++-|=+. -|+..|..+|.+..+.|.+++-+..+.-.++. ..+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345666777776667666666554332 24455666677777777777766666555443 2334444566667
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCC
Q 010229 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--------------------GFQLN 216 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~~~ 216 (514)
|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+..- .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777666554433321 144444555555555555555554444332110 00124
Q ss_pred hhhHHHHHHHHHccCChHHHHHH
Q 010229 217 SFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
+.||-.+-.+|...+.+..|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHh
Confidence 56666666666666665554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.29 Score=37.76 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=53.5
Q ss_pred CCHhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChH-hHHHHHHH------HHhcCChhhHHHHHHHHHHc
Q 010229 110 PSSISYASLIEALASVGRT------LEADAIFQEMVCFGFNPKLR-FYNILLRG------FLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~~~~~ 176 (514)
.|..+|-..+..+-+.|+. ++.+++|++.... ++|+.. .|..-|.. +...++.+.|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5555666655543 234311 11111111 11235666677777666554
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010229 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
+-.- ...|......-.+.|++..|.+++...+..+.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2211 555555666666667777777777666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.23 Score=38.74 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhhH
Q 010229 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVG---RTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A 166 (514)
.+..+.+-|.+..+.| +++..+...+..++++++ +.++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455555565555544 356666666666666665 4446666666666543 12 233333444455566666666
Q ss_pred HHHHHHHHH
Q 010229 167 SRLLMVMED 175 (514)
Q Consensus 167 ~~~~~~~~~ 175 (514)
.+.++.+.+
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.001 Score=62.02 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=146.9
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.-|+..|..+|....+.|++++-+..+...++. ..++..=+.|+-+|++.++..+-.+.+ ..|+..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHH
Confidence 346777889999999999999999988877665 345556678999999999876644332 14666666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--------------------CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMG--------------------ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 213 (514)
.+-|...|.++.|.-+|..+.... -..+..||-.+-.+|...+++.-|.-.--.+.-
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv--- 227 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--- 227 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---
Confidence 777877787777777766543211 124667899999999999988877655444432
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC------C
Q 010229 214 QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRP------D 286 (514)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p------~ 286 (514)
...-...++..|-..|.+++.+.+++...... ......|+-|.-.|+|-. .++..+.++..-.+ +++. .
T Consensus 228 --hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ 303 (624)
T 3lvg_A 228 --HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQ 303 (624)
T ss_dssp --CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTT
T ss_pred --cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22223345667888999999999988877432 456778888888887763 34444443332221 2211 2
Q ss_pred HHHHHHHHHHHHhcCChHHHH
Q 010229 287 IVTWNSLIRWHCKAGDVAKAL 307 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~ 307 (514)
...|.-++-.|.+-.++|.|.
T Consensus 304 ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 304 AHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCHHHHHHHHHHHTCHHHHH
T ss_pred HhhHHHHHHHHhcchhHHHHH
Confidence 334777777777777777664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=1.1 Score=35.90 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=62.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010229 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
..+.|+++.|.++.+++ .+...|..+.......|+++.|.+.|..... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777776655 2566777777777777777777777766543 33444445556666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 418 (514)
..+-+.....|- ++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555554444432 445555566667777777776544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.17 Score=37.93 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 425 PNLVMLNVLINAFGVAGKYKE---ALSVYHLMKDIGIS-PDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
++..+--.+.+++.+.....+ ++.++++..+.+.+ -.....-.|.-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455554444333 45555544443210 1222333344455555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.14 E-value=1.3 Score=34.14 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010229 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
...|......-.++|+++.|.+++.+....+.+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 333444444444455555555555555554444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.45 Score=35.66 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 010229 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ---TVKVLQLMEPEGIEP--NLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 447 (514)
...+.+-|.+....+. ++..+-..+..++.+..+... ++.+++...+.+ .| +....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555665555554 677777777788888776655 888888887764 23 3445566778899999999999
Q ss_pred HHHHHHHHC
Q 010229 448 SVYHLMKDI 456 (514)
Q Consensus 448 ~~~~~m~~~ 456 (514)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.47 Score=44.24 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcCHHH
Q 010229 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLVT 464 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 464 (514)
...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|++.. +.|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555566666766666666665542 4455666666777777777777776666653 3466665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.82 Score=46.23 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCC-Ch--
Q 010229 81 NKSIQYCCKLGD-IDEAMALLAQMQALGFHPSSISY--ASLIEALASVGR-TLEADAIFQEMVCF------GFNP-KL-- 147 (514)
Q Consensus 81 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~-~~~A~~~~~~~~~~------g~~~-~~-- 147 (514)
..++..+...|+ ++.|+.+|+++.+.. |...++ ..++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444555566 588999999998873 433332 233333333322 22355555444321 1111 11
Q ss_pred --------HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010229 148 --------RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 148 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
.....-.+.+...|+++.|+++-++.....+ -+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122223455678999999999999887543 457899999999999999999999888763
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.91 E-value=1.3 Score=44.71 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=78.1
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHc------CCCC-Chh----
Q 010229 152 ILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSK------GFQL-NSF---- 218 (514)
Q Consensus 152 ~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~~---- 218 (514)
.++..+...++ .+.|..+|+++.+.....+......++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 4778888888877543222222233344333333 223455555544321 1111 111
Q ss_pred ------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 219 ------VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 219 ------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
....-.+.|...|+++.|+++-++....- +.+-.+|..|...|.+.|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345667899999999999988873 5578899999999999999999999998874
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.46 E-value=1.5 Score=30.98 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010229 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+..+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.96 Score=42.09 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCcChHhHHH
Q 010229 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYEI 187 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 187 (514)
...++.++...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456667777788888887777776654 55677788888888888888888888777643 477777665443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.09 E-value=16 Score=37.93 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=152.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 010229 226 LYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQESI-------RPDIVTWNSLIRW 296 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 296 (514)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777778777776554211123 22333334445556655677777766554210 0112222233333
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHh
Q 010229 297 HCKAGD-VAKALELFTQMQEQGFYPDPKI--FI--TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI--YGQ 369 (514)
Q Consensus 297 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 369 (514)
.+-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++.+ +..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 433443 245666666666532 2211 12 23334556678777777777766542 23333334444 447
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010229 370 YGRFRDPEECIAALKLEGLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 370 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
.|+.+.+..+++.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789999999988887631 22222112 23345667788888888998887642 223333333334555567777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc-chHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010229 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+...-+-++-..+
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 7777666543 45555555555555556654 577888888863 667776666666665544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.88 E-value=4.1 Score=30.69 Aligned_cols=72 Identities=3% Similarity=-0.102 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010229 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 44444444455555554432 34555555555433222233444555566666666666666666655 45543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.34 E-value=12 Score=35.32 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010229 231 GMWKKAVGIVEEIREM-----GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
|+++.|++.+-.+.+. +..........++..|.+.++++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777666555532 2334466667777777777777777666655543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.33 E-value=7.6 Score=41.96 Aligned_cols=191 Identities=10% Similarity=0.062 Sum_probs=118.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----C----------------
Q 010229 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----G---------------- 352 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------- 352 (514)
++..+...+.++-+.++..-. +.++..--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344455556665555443322 224444445566788899999999998765311 0
Q ss_pred --CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010229 353 --HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 353 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
...-..-|..++..+.+.+.++.+.+.-+...+....-+. ..|..+.+++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0111234677888889999999999888877664332222 257888999999999999999998887653 34
Q ss_pred HHHHHHHHHHHHHcCCHHH------------HHHHHHHH-HHC-CCCcCHHHHHHHHHHHHcCCCcchHHHH-HHHHHh
Q 010229 427 LVMLNVLINAFGVAGKYKE------------ALSVYHLM-KDI-GISPDLVTYSTLMKAFIRAKKFHKVPEI-YKQMES 490 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m-~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 490 (514)
...+..|+...+..|..+. ..+++..- +.. .+...+.-|..|-.-+...|++.+|..+ |+.+.+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5677888888777666544 33333322 111 1111223456666666778888776554 665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.89 E-value=13 Score=40.11 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010229 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI----VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
..-|..++..+-+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345666777777778877777776665543211121 2477788888888888888888877765433 3456667
Q ss_pred HHHHHHccCCHHH
Q 010229 328 IISCLGELGKWDV 340 (514)
Q Consensus 328 ll~~~~~~~~~~~ 340 (514)
++..++..+..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7776666665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.29 E-value=15 Score=34.75 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHHH----hc
Q 010229 91 GDIDEAMALLAQMQAL-----GFHPSSISYASLIEALASVGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFL----KK 160 (514)
Q Consensus 91 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~----~~ 160 (514)
|++++|++-+-.+.+. +..-.......++..|...|+++...+.+..+.+ .|..+ .....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6788888877666542 2233456678889999999999988887766654 33222 22233333222 12
Q ss_pred CChhhH--HHHHHHHHH--cC-CCc---ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHH
Q 010229 161 GLLGLG--SRLLMVMED--MG-ICR---NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-----SFVYGKVIGLY 227 (514)
Q Consensus 161 g~~~~A--~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~ll~~~ 227 (514)
...+.. ..+.+.+.. .| +-. .......|...+...|++.+|.+++.++...-...+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 00 000 112234556667777777777777777653311111 23444555666
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010229 228 RDNGMWKKAVGIVEEIRE----MGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666777666666665432 111111 1234444555555566666655555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.97 E-value=2.7 Score=31.54 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010229 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALV 508 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~ 508 (514)
+..+-++.+...++.|++....+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 133 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHh
Confidence 34444455555566666666666666666666666666666665543 3333445555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.30 E-value=7.1 Score=29.82 Aligned_cols=66 Identities=3% Similarity=-0.112 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 425 PNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|+..+--.+.+++.+..+. .+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444332221223333444455555555555555555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.78 E-value=14 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFE 276 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~ 276 (514)
+......+...|.+.+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66677777788888888888887764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.69 E-value=4.6 Score=30.42 Aligned_cols=69 Identities=14% Similarity=-0.059 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 388 LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
..|+..+-..+..++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35666666666777777664 4567788888776642224556677778889999999999999888874
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.12 E-value=6.3 Score=27.93 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010229 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 302 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 334555666666666777788888888888888888888888777776542 112334555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.72 E-value=1.9 Score=37.12 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=45.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
....+.|+++++++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567889999998888777764 557777788889999999999999988888764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.64 E-value=10 Score=28.95 Aligned_cols=68 Identities=15% Similarity=-0.048 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 389 QPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|+..+-..+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4666666666677777664 4567778877776532223445556777888899999999988888874
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.07 E-value=20 Score=31.79 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=11.7
Q ss_pred HHHHcCCCCChHhHHHHHHHHHh
Q 010229 137 EMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 137 ~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
-..+.+.+++......++..+..
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 33344555555555555555444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.05 E-value=15 Score=29.98 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 010229 406 GLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (514)
+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335566666666666554333 34556666666666777777777766666655553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.75 E-value=9.2 Score=30.11 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSS-------ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.+-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556778889999999999988865431 13332 2567778899999999999999999754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.76 E-value=12 Score=35.22 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCcChHh--HH
Q 010229 114 SYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQET--YE 186 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 186 (514)
++..+...+.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566677777777777777777777653 22233455666677777777777777777666432 21121111 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 010229 187 ILLDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~ 210 (514)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223456777777777766644
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.82 E-value=15 Score=27.74 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010229 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455566666666778888888888888888888888888888776542 222445555543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.18 E-value=23 Score=33.28 Aligned_cols=61 Identities=5% Similarity=-0.173 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010229 149 FYNILLRGFLKKGLLGLGSRLLMVMEDM--GICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666666666666666666666543 222223445555555555666666655555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.8 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.41 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.14 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.45 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.06 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.1e-22 Score=187.95 Aligned_cols=384 Identities=14% Similarity=0.050 Sum_probs=279.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4566778899999999999988764 4467888889999999999999999999998865 4567788899999999999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
+++|.+.+....+... .+...+..........+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 9999999999887654 34445555555555666666666655555544322 444455556667777788888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010229 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
..... +.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|+..+++..... ..+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 77654 4466777778888888888888888888877643 2256677788888888888888888888877653 3356
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010229 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (514)
..+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 667777777888888888888888877764 3456677777777777777777777777776653 34566667777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010229 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|.+.|+++.+..+. +...|..+..+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 77777777777777776642 334566777777777777777777777777664322 45567777777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.4e-21 Score=181.58 Aligned_cols=382 Identities=14% Similarity=0.058 Sum_probs=314.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010229 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
+...+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|.+.|++..+..+ .+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 4566778999999999999998864 45678899999999999999999999999988654 467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010229 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
+++|+..+......... +..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 99999999999887433 44444555555556666666666666655544 33445555666677788888888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH
Q 010229 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (514)
..... +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++...... +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 76653 2356778888899999999999999999988753 2356788889999999999999999999998875 4567
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 010229 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (514)
..+..+...+.+.|++++|...|++..+... -+..+|..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 7888899999999999999999999987643 357788999999999999999999999988764 66788899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010229 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
...|++++|++.|++..+.... +..++..+..+|.+.|++++|.+.|++..+ +.|+ ...+..+..++.+.|
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999875433 577899999999999999999999999987 6775 667888888877655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4e-13 Score=122.38 Aligned_cols=228 Identities=13% Similarity=0.045 Sum_probs=143.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|.+..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 35667789999999999999999875 4568899999999999999999999999998865 456788899999999999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhH----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHH
Q 010229 162 LLGLGSRLLMVMEDMGICRNQETY----------------EILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI 224 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll 224 (514)
++++|.+.++....... +.... ...+..+...+.+.+|.+.|.+...... ..+..++..+.
T Consensus 102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTST--TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhcc--chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999999999887532 21110 0111122233444455555555443321 12334444455
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
..+...|++++|+..+++..... +.+...|..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555555442 2244455555555555555555555555544431 113444555555555555555
Q ss_pred HHHHHHHHHHH
Q 010229 305 KALELFTQMQE 315 (514)
Q Consensus 305 ~A~~~~~~m~~ 315 (514)
+|++.|++..+
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.2e-12 Score=119.11 Aligned_cols=228 Identities=13% Similarity=0.050 Sum_probs=154.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 196 (514)
.....+.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...|++..+..+ -+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45667889999999999999999875 45678999999999999999999999999988654 46788899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 010229 197 RLDDTWLIINEMRSKGFQLNSFV----------------YGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSII 259 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~g~~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li 259 (514)
++++|.+.+++...... +... ....+..+...+.+.++.+.+.+..+... ..+..++..+.
T Consensus 102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTST--TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhcc--chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999999999877532 2111 00111222333455566666665554321 23455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010229 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
..+...|++++|...|++..... +-+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666655432 1245566666666666666666666666666532 123455666666666666666
Q ss_pred HHHHHHHHHHh
Q 010229 340 VIKKNFENMKD 350 (514)
Q Consensus 340 ~a~~~~~~~~~ 350 (514)
+|...|++.++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.5e-09 Score=97.52 Aligned_cols=215 Identities=8% Similarity=-0.005 Sum_probs=161.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
...|+.+-..+.+.+.+++|+++++++.+.+ +-+...|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3567777788889999999999999999885 556778899988888876 5899999999998875 567889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--- 232 (514)
.+.+.|++++|++.++++.+..+ .+...|..+...+.+.|++++|++.++.+++..+. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 99999999999999999998655 57889999999999999999999999999887433 56677766666655554
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 010229 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLIRWH 297 (514)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~ 297 (514)
+++|++.+...++.. +.+...|+.+...+...+ .+++.+.++...+.... .+...+..++..|
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 567777777777664 446677776666554433 45666666655443211 2344444454444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=3.4e-09 Score=95.00 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 93 IDEAMALLAQMQALGFHPSSISYASLIEALASV--------------GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+++..+|+++...- +.+...|..-+.-+-.. +..++|..+|++..+...+.+...|...+....
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 355667777776542 34556666555543322 234677778887776544555667777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHccCChHHHH
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG-LYRDNGMWKKAV 237 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~a~ 237 (514)
+.|+++.|..+|+++.+.........|...+....+.|+.+.|.++|.++...+.. +...|..... -+...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 88888888888888776544333456777788777888888888888887766433 3333333332 233457777788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++..... ..| ....|...+.--...|+.+.+.++++++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887777652 4466777777777777777777877777766542 222 23456666666666777777777777665
Q ss_pred H
Q 010229 315 E 315 (514)
Q Consensus 315 ~ 315 (514)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=5.8e-09 Score=95.30 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=127.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHH
Q 010229 255 YNSIIDTFGKYGELVEALEVFEKMQQ----ESIR--PD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYPDPK 323 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ 323 (514)
+..+...+...|++..+...+.+... .+.. +. ...+..+...+...|+++.+...+...... +......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 33444455555666665555554332 1111 11 123344455566666666666666665532 1112233
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCC--cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHHH
Q 010229 324 IFITIISCLGELGKWDVIKKNFENMKDR----GHGK--IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP---SGSM 394 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 394 (514)
.+......+...++...+...+...... +..+ ....+..+...+...|+.++|...++......... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4444445555666666666665554431 1111 12344555666677777777777777665432221 2344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc----C
Q 010229 395 FCILANAYAQQGLCEQTVKVLQLMEP----EGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISP----D 461 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p----~ 461 (514)
+..+...+...|++++|...++.... .+..|+ ...+..+..+|...|++++|.+.+++..+. |... .
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 55667778888888888888877653 233333 356777888899999999999998887542 2211 1
Q ss_pred HHHHHHHHHHHHcCCCcchHHH
Q 010229 462 LVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
...+..++..+...++.+++.+
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH
Confidence 1234445555566666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.4e-08 Score=92.67 Aligned_cols=267 Identities=10% Similarity=-0.029 Sum_probs=186.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 010229 224 IGLYRDNGMWKKAVGIVEEIREMGLSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLI 294 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li 294 (514)
...+...|++++|++++++.++.....+ ...+..+...|...|++++|...|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3455667777777777777666432211 23566677778888888888888877654210 111 23456667
Q ss_pred HHHHhcCChHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCCcHHHHHHH
Q 010229 295 RWHCKAGDVAKALELFTQMQE----QGFYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRG----HGKIGAIYAIL 363 (514)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 363 (514)
..+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+....... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 788899999999999887653 222211 2345566778889999999999998887542 22334566667
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHHH
Q 010229 364 VDIYGQYGRFRDPEECIAALKLEG--LQPS----GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE---PNLVMLNVLI 434 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~li 434 (514)
...+...++..++...+.+..... .... ...+..+...+...|++++|...++...+.... .....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 777888899999998888765421 1111 234556667788999999999999988765322 2345667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 435 NAFGVAGKYKEALSVYHLMKD----IGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.++...|++++|...++++.. .+..|+ ...+..+..+|.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998753 344444 34778888999999999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.1e-08 Score=91.57 Aligned_cols=215 Identities=9% Similarity=0.071 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010229 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
..++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|++.+++..+..+ .+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 355666667778899999999999999975 566778899888888876 58999999999988655 578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----
Q 010229 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---- 267 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 267 (514)
+.+.|++++|++.++++.+.... +...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999987433 68889999999999999999999999999876 4577788887777666554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 010229 268 --LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY-PDPKIFITIISCLG 333 (514)
Q Consensus 268 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~ 333 (514)
+++|++.+.+..+.. +.+...|+.+...+. ....+++.+.++...+.... .+...+..+...|.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 678888888877653 236777777766554 44467777888777653322 24555555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=1.1e-08 Score=91.56 Aligned_cols=185 Identities=8% Similarity=0.033 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010229 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
++|..+|++..+...+.+...|...+....+.|++++|..+|+++.+.........+...+..+.+.|+.+.|..+|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444444444332223334444444444455555555555555444322222234444455555555555555555555
Q ss_pred HhcCCCCcHHHHHHHHHH-HHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-
Q 010229 349 KDRGHGKIGAIYAILVDI-YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-IEP- 425 (514)
Q Consensus 349 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p- 425 (514)
.+... .+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+...|+.+.|..+|++..... ..|
T Consensus 161 l~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 44432 122222222222 223455666666666665542 2345566666666666777777777777665542 222
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 426 -NLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 426 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
....|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234666666666667777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=4.2e-10 Score=102.46 Aligned_cols=258 Identities=11% Similarity=0.011 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHH---HHHccC-------ChHHHHHHHHHHHHcCCCCCHHH
Q 010229 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYGKVIG---LYRDNG-------MWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 186 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~---~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
..++......+..++|++++++..+. .|+ ...|+..-. .....+ .+++|+.+++...+.+ +.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33333333333446677777766654 233 223332222 222221 2344555555554442 234444
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 255 YNSIIDTFGKYG--ELVEALEVFEKMQQESIRPDIVTWNS-LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (514)
Q Consensus 255 ~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 331 (514)
|..+..++...+ ++++|...++++.+.. +++...|.. ....+...+.+++|+..++.+.+... -+...+..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 444444443333 2455555555544431 122333322 22334444555555555555544321 134444444445
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010229 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
+.+.|++++|...+....+.. . ........+...+..+++...+........ ++...+..+...+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENVL----L-KELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHHH----H-HHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHhH----H-HHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHH
Confidence 555555444433332222210 0 011122223333444444444444443321 2222233333444444444555
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010229 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
...+.+..+.. +.+...|..+..++...|++++|.+.++++.+
T Consensus 262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55444444332 11233444444444455555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.4e-09 Score=98.96 Aligned_cols=214 Identities=4% Similarity=-0.139 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHccCChHHHHHH
Q 010229 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG--RLDDTWLIINEMRSKGFQLNSFVYG-KVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~ 239 (514)
+++|+..++...+..+ .+...|..+..++...+ ++++|...+.++.+.... +...+. .....+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHH
Confidence 4445555555444322 23344444444443333 245555555555444211 222222 222344445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010229 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 319 (514)
++.+++.+ +.+...|+.+...+.+.|++++|...++...+. .|+ .......+...+..+++...+....... +
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 55555443 234455555555555555554443333322211 000 0111222333344444555554444332 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 010229 320 PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 320 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 386 (514)
++...+..+...+...++.+++...+.+..+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 122223333334444445555555555444432 223344444555555555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.8e-08 Score=87.67 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010229 233 WKKAVGIVEEIREMGLSL---DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
.+.++.-+++........ ...++..+...|.+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 444555555555432111 12344455555666666666666666655432 12445555555666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010229 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 310 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
|+++.+... -+..++..+..++...|+++.|...++...+.
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666555321 12344455555555555555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=4.9e-08 Score=84.74 Aligned_cols=96 Identities=14% Similarity=-0.085 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44455555666666666666666665543 3345556666666666666666666666665543 233445555555666
Q ss_pred hcCChhhHHHHHHHHHHc
Q 010229 159 KKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~ 176 (514)
..|++++|.+.|+...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 666666666666655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4e-07 Score=74.55 Aligned_cols=131 Identities=11% Similarity=-0.081 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|+. ...+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|++.++.+ +.+...|..+..+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4554 455678899999999998753 5788889999999999999999999999999876 567788999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCC--------------c-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010229 159 KKGLLGLGSRLLMVMEDMGIC--------------R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
+.|++++|.+.|++....... . ...++..+..++.+.|++++|.+.+.........+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999988753110 0 12345566677778888888888887776654443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=2.6e-07 Score=81.57 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=81.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc----CCC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhhHHHH
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-----LNSFVYGKV 223 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~~~~~l 223 (514)
...|...|++++|.+.|.+..+. +-. .-..+|..+..+|.+.|++++|.+.+++....-.. ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34566666777777666665542 111 11345666666677777777777666655432100 012233344
Q ss_pred HHHHH-ccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----H-HHHH
Q 010229 224 IGLYR-DNGMWKKAVGIVEEIREM----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-----I-VTWN 291 (514)
Q Consensus 224 l~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~-~~~~ 291 (514)
...|. ..|++++|++.+++..+. +.++ ...++..+...+.+.|++++|.+.|++......... . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 44443 346666666666655431 1011 123455556666666666666666666554321110 0 1122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010229 292 SLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
..+..+...|+++.|...+++..+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344555666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=4.2e-05 Score=65.79 Aligned_cols=223 Identities=11% Similarity=-0.012 Sum_probs=125.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010229 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4456667777778889999999999888865 56666667777665 567788888888877654 3333444
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 153 LLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV----NAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 153 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 4444433 34567777777777665531 12222222222 2334555555555554432 444555555
Q ss_pred HHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010229 225 GLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRW 296 (514)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 296 (514)
..+.. ..+...+..+++...+.| +......+...|.. ..++++|...|++..+.| +...+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 55543 344555555555555543 34444444444433 345666666666655554 34444444444
Q ss_pred HHh----cCChHHHHHHHHHHHHCC
Q 010229 297 HCK----AGDVAKALELFTQMQEQG 317 (514)
Q Consensus 297 ~~~----~g~~~~A~~~~~~m~~~g 317 (514)
|.+ ..+.++|.++|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 443 224555666665555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=1.2e-06 Score=77.12 Aligned_cols=132 Identities=9% Similarity=0.013 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL----GFHPS-SISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPKLR 148 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 148 (514)
.|......|...|++++|++.|.++.+. +-+++ ..+|..+..+|.+.|++++|.+.++...+. |. .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 5667777777777777777777776542 11111 245666666777777777777766665431 10 00122
Q ss_pred hHHHHHHHHHh-cCChhhHHHHHHHHHHc----CCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010229 149 FYNILLRGFLK-KGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 149 ~~~~li~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 210 (514)
++..+...|.. .|++++|.+.|++..+. +-.+ ...++..+...+...|++++|++.|++...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 33333444422 35555555555544321 1000 112344444444555555555555544443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.5e-06 Score=64.51 Aligned_cols=93 Identities=14% Similarity=-0.002 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010229 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
-...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4456677788888888888777664 4566677777777777788888888777777765 5566777777777777777
Q ss_pred hhhHHHHHHHHHHcC
Q 010229 163 LGLGSRLLMVMEDMG 177 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~ 177 (514)
+++|...|++..+..
T Consensus 87 ~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.3e-06 Score=64.76 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010229 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
...+...|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 345566677777777777766653 445666777777777777777777777777665433 566677777777777777
Q ss_pred chHHHHHHHHHhCCCCCCH
Q 010229 479 HKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~ 497 (514)
++|+..+++..+ +.|+.
T Consensus 88 ~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 777777777776 45544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.5e-06 Score=69.66 Aligned_cols=84 Identities=10% Similarity=-0.106 Sum_probs=40.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHH
Q 010229 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD 200 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 200 (514)
.+...|+++.|++.|.++. +|+..+|..+..+|.+.|++++|++.|++..+.++ .+...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHH
Confidence 3344455555555554321 34444444455555555555555555555544332 234444444455555555555
Q ss_pred HHHHHHHHH
Q 010229 201 TWLIINEMR 209 (514)
Q Consensus 201 A~~~~~~m~ 209 (514)
|++.|++..
T Consensus 89 A~~~~~kAl 97 (192)
T d1hh8a_ 89 AIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.4e-06 Score=67.39 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+....+.|.+.|++++|+..|++..+.. +.+...|..+...+...|++++|.+.|+.+++.. +.+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3445566777888888888888877764 4566777777778888888888888888877764 4556777777788888
Q ss_pred cCChhhHHHHHHHHHHcC
Q 010229 160 KGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~ 177 (514)
.|++++|.+.+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 888888888887777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=1.7e-06 Score=71.32 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=66.1
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
|+...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 444555566667777777777777777766654 4456667777777777777777777777776543 33455666677
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 010229 155 RGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~ 175 (514)
.+|.+.|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.40 E-value=0.00043 Score=59.15 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCH
Q 010229 391 SGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDL 462 (514)
Q Consensus 391 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 462 (514)
+...+..+...|.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| ++
T Consensus 141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~ 214 (265)
T d1ouva_ 141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 214 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CH
Confidence 34445555555553 345666667777666644 55555556656655 567888888888888776 45
Q ss_pred HHHHHHHHHHHc----CCCcchHHHHHHHHHhCCCCC
Q 010229 463 VTYSTLMKAFIR----AKKFHKVPEIYKQMESSGCTP 495 (514)
Q Consensus 463 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p 495 (514)
..+..|...|.+ ..+.++|.+.|++..+.|..+
T Consensus 215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 566667666664 347788888888888777443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=7.4e-06 Score=64.48 Aligned_cols=92 Identities=7% Similarity=0.026 Sum_probs=67.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010229 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
....|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+..+ .+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCC
Confidence 3456677788888888888777765 45667777777777777888888887777776543 355677777777777777
Q ss_pred HHHHHHHHHHHHHc
Q 010229 198 LDDTWLIINEMRSK 211 (514)
Q Consensus 198 ~~~A~~~~~~m~~~ 211 (514)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.1e-06 Score=65.52 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCH-HHHHHHHHHH
Q 010229 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDL-VTYSTLMKAF 472 (514)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 472 (514)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+. .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 44555666667777777777766654 4456666666666665443 34577777776654443332 3566666777
Q ss_pred HcCCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 010229 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+.|++++|++.|+++.+ +.|+..-...+
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 777777777777777776 55654433333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=3.3e-06 Score=69.55 Aligned_cols=99 Identities=9% Similarity=-0.062 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 010229 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (514)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 434 (514)
|+...+......|.+.|++++|+..|++.....+ .+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 5566677788899999999999999999988763 478889999999999999999999999998763 33577899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 010229 435 NAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=3.3e-06 Score=61.92 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
-.+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345667788899999999999988874 4468888999999999999999999999988865 55678888888888889
Q ss_pred CChhhHHHHHHHHH
Q 010229 161 GLLGLGSRLLMVME 174 (514)
Q Consensus 161 g~~~~A~~~~~~~~ 174 (514)
|++++|.+.+++..
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999988888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=0.00091 Score=58.60 Aligned_cols=135 Identities=9% Similarity=0.119 Sum_probs=59.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
|..-...+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 33333444555555555555555554432 1444555555555555555544433 23445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010229 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 266 (514)
.+.+......+ .+.......++.....++..|-..|.+++...+++...... ..+...++-++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 55554444332 11122223344444555566666666666666666554321 345555666666666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=5.8e-06 Score=61.41 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-hHhHHHHHHH
Q 010229 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (514)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356677777778888888888777765 55667777777777765443 457777777766542232 2356667777
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 010229 157 FLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~ 177 (514)
|.+.|++++|.+.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 777777777777777777643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=9.8e-06 Score=59.30 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC
Q 010229 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 196 (514)
.+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..|++..+..+ .+...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCC
Confidence 34555667777777777777777654 34566777777777777777777777777766543 34666677777777777
Q ss_pred CHHHHHHHHHHH
Q 010229 197 RLDDTWLIINEM 208 (514)
Q Consensus 197 ~~~~A~~~~~~m 208 (514)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0022 Score=56.06 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=88.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010229 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
|..--..+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 33444457777889999999999998655 2667788888999999988877654 35668888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010229 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.+.+......+. +.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 888877665432 222223345666678899999999999999999887543 2446777888888888864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.5e-05 Score=58.69 Aligned_cols=104 Identities=10% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cC-----HHHHHHHHH
Q 010229 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-PD-----LVTYSTLMK 470 (514)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-----~~~~~~l~~ 470 (514)
.+...+...|++++|++.|.+..+.+ +.+...|..+..+|.+.|++++|++.++++.+.... ++ ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455666666777777666666653 335666666667777777777777777666542111 00 124555666
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 010229 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+...+++++|++.|++... ..|+......+
T Consensus 88 ~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 118 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKC 118 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh--cCCCHHHHHHH
Confidence 66666777777777766665 33444443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.0001 Score=58.35 Aligned_cols=111 Identities=12% Similarity=-0.030 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010229 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+......+.+.|++++|+..|++..+.--..... ...-......+. ..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQALR-------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchhH-------HHHHHHHHHHHH
Confidence 44556678888999999999999887642100000 000000000000 123444455555
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
+.|++++|+..++...+..+ .++..|..+..+|...|++++|+..|++..+.
T Consensus 74 k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 55555555555555554432 24445555555555555555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.0001 Score=58.33 Aligned_cols=79 Identities=9% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010229 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
.+|+.+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++..+..+. |......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356677788889999999999998888764 447788888889999999999999999998875432 555555554444
Q ss_pred H
Q 010229 473 I 473 (514)
Q Consensus 473 ~ 473 (514)
.
T Consensus 141 ~ 141 (170)
T d1p5qa1 141 Q 141 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5.9e-05 Score=56.51 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------hHhHHH
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LRFYNI 152 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~~~~~ 152 (514)
+..+...+.+.|++++|+..|++..+.+ +.+..++..+..+|.+.|++++|++.++++++.. +.+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4556778888899999999998888775 4567788888888888899998888888877632 111 134555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 010229 153 LLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
+...+...+++++|.+.|++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 66666677777777777776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=0.00014 Score=56.27 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR-KARQILQSA 506 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~a 506 (514)
.+|..+..+|.+.|++++|++.++++.+..+. +...|..+..++...|++++|...|++..+ +.|+. .....+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 45677888888888888888888888776433 677888888888888888888888888887 56643 344444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.00025 Score=54.81 Aligned_cols=109 Identities=12% Similarity=-0.028 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF----HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
..+..-...+.+.|++.+|+..|++....-. .++.... .... .....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhH
Confidence 3456667788899999999999998876411 0111100 0000 0112344555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..+|.+.|++++|++.++...+..+ .+..+|..+..++...|++++|+..|+...+.
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666666655443 34556666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00017 Score=57.34 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=82.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 010229 363 LVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (514)
........|++++|.+.|.+....- +.... ......+.+...-..+.. .....+..+...+.+.|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3345667788888888888776531 11100 000000111111111111 123456778888899999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 010229 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQILQS 505 (514)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~~ 505 (514)
+++|+..++++.+.... +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+....-.
T Consensus 83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999998876443 778899999999999999999999998753 589998876554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.83 E-value=0.0002 Score=57.00 Aligned_cols=124 Identities=9% Similarity=-0.035 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010229 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.........|++++|.+.|.+....- ++... ......+.+...-..+.. .....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34457788999999999999988751 22110 000111111111111111 12346777888888999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhH
Q 010229 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR-----SKGFQLNSFVY 220 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~ 220 (514)
++++|...++++.+..+ -+...|..++.++.+.|+..+|++.|+++. +.|+.|...+-
T Consensus 82 ~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999998888655 577889999999999999999999888874 35888887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.00016 Score=57.14 Aligned_cols=125 Identities=6% Similarity=-0.054 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+......+.+.|++++|++.|+++.+.. ..............+ . +.....|..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~~----~----~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAKL----Q----PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGGG----H----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHHh----C----hhhHHHHHHHHHHHHh
Confidence 4455667788899999999998876420 000000000000000 0 1233445556666666
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010229 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
.|++++|+..+++..+..+ .+...|..+..++...|++++|+..|++..+.... +......+..+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6666666666666666543 35556666666666667777777666666665322 34444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00027 Score=55.67 Aligned_cols=109 Identities=8% Similarity=-0.054 Sum_probs=58.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010229 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL---GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
..+......+.+.|++.+|+..|++.... ....+.. -......+ ...+|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhHH
Confidence 34556777889999999999999886642 0011100 00000000 012344445
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
.+|.+.|++++|+..++...+..+ .+..+|..+..++...|++++|...|.+....
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555433 34455555555555555555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00074 Score=53.03 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010229 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
+|+.+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+++.+..+. +......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45667777888888888888888887764 557778888888888888888888888888875432 4555555544443
Q ss_pred cC
Q 010229 474 RA 475 (514)
Q Consensus 474 ~~ 475 (514)
+.
T Consensus 144 ~~ 145 (168)
T d1kt1a1 144 KA 145 (168)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=2.5e-05 Score=74.08 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhhHHHHHHH
Q 010229 95 EAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRGFLKKGLLGLGSRLLMV 172 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 172 (514)
+|.+.|++..+. +|+ ..++..+..++...+++++| |++++... |+. ..++.. ..+.+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHHH-HHHHHHHHHHHH
Confidence 688899988765 444 45677778888888888776 67776542 321 111111 11111 124456667776
Q ss_pred HHHcCCCcChHhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 010229 173 MEDMGICRNQETYEILLDY--HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (514)
Q Consensus 173 ~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (514)
..+....++..-....... ....+.++.|+..+....+.. .++...+..+...+.+.|+.+.|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 6654433333222222222 223344555555444433321 2245667777788888899999988887766532
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010229 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 330 (514)
...++..+.+.+...|++++|...|++..+.. +-+...|+.+...+...|+..+|+..|.+..... .|-+.++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 23567778889999999999999999988763 2355789999999999999999999999988754 467777777777
Q ss_pred HHHcc
Q 010229 331 CLGEL 335 (514)
Q Consensus 331 ~~~~~ 335 (514)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00029 Score=55.56 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010229 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|..+..++.+.|++++|+..++++.+.... +...|..+..++.+.|++++|.+.|++..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555566666666666655554322 445555555566666666666666665555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.00018 Score=55.12 Aligned_cols=73 Identities=8% Similarity=-0.086 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010229 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASV----------GRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
|-+.+.+++|++.|+...+.. |.+..++..+..++... +.+++|+..|++.++.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345677999999999998875 56777888888887754 34466777777777654 4556677777766
Q ss_pred HHhcC
Q 010229 157 FLKKG 161 (514)
Q Consensus 157 ~~~~g 161 (514)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 66544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.63 E-value=4.8e-05 Score=64.89 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=78.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010229 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
..+.|++++|+..+++..+.. +.|...+..+...++..|++++|.+.|+...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 456799999999999998875 5678889999999999999999999999988864 22344444444444332222222
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010229 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111122334444556677788888888888887665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.41 E-value=0.00012 Score=62.24 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=70.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010229 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
..+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.|+...+..+ -+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHH
Confidence 346788888888888888875 56778888888888888888888888888877542 2233444443333322222222
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 010229 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111100000011111222233344555667777777777666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.40 E-value=0.00057 Score=52.11 Aligned_cols=71 Identities=3% Similarity=-0.215 Sum_probs=47.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----------ChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010229 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG----------LLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
-+.+.+++|+..|+...+.. |.+..++..+..++...+ .+++|+..|++..+..+ .+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHH
Confidence 34566889999999988875 566777887777776543 34566666666666543 3455666666665
Q ss_pred Hhc
Q 010229 193 VNA 195 (514)
Q Consensus 193 ~~~ 195 (514)
...
T Consensus 86 ~~~ 88 (145)
T d1zu2a1 86 TSF 88 (145)
T ss_dssp HHH
T ss_pred HHc
Confidence 544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00032 Score=66.17 Aligned_cols=115 Identities=10% Similarity=-0.171 Sum_probs=55.3
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010229 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
++...+..+...+.+.|+.+.|...++...... ...++..+...+...|++++|...|.+..+.... +...|+.+.
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHH
Confidence 344455566666666677666666665554311 1235556666677777777777777776665322 456677777
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010229 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK 264 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (514)
..+...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 77777777777777777776654 4556666666655543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.16 E-value=0.0035 Score=48.24 Aligned_cols=96 Identities=19% Similarity=0.064 Sum_probs=56.3
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---
Q 010229 79 SYNKS--IQYCCKLGDIDEAMALLAQMQALGF-HPS----------SISYASLIEALASVGRTLEADAIFQEMVCFG--- 142 (514)
Q Consensus 79 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~-~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--- 142 (514)
+|..+ ...+.+.|++++|++.|++..+..- .|+ ...|+.+..+|...|++++|.+.+++.++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 45555 4456677899999999988875310 111 3457777777788888888877777765420
Q ss_pred --CCCC-----hHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010229 143 --FNPK-----LRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 143 --~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
..++ ...+..+..+|.+.|++++|.+.|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1123444455555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.94 E-value=0.0084 Score=45.96 Aligned_cols=25 Identities=20% Similarity=-0.008 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 010229 290 WNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
++.+..+|...|++++|+..|++..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0046 Score=42.78 Aligned_cols=63 Identities=10% Similarity=-0.113 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010229 80 YNKSIQYCCKLGDIDEAMALLAQMQALG-----FHPS-SISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|+..++++++..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3456677777888888888887765431 1111 3467777777777777777777777777653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.44 E-value=0.077 Score=38.92 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 010229 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDV 303 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~ 303 (514)
+.++|.+++++..+.| +...+..|...|.. ..+.++|.++|++..+.| +......|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4445555555544443 23333333333322 234455555555554443 23333333333332 2344
Q ss_pred HHHHHHHHHHHHCC
Q 010229 304 AKALELFTQMQEQG 317 (514)
Q Consensus 304 ~~A~~~~~~m~~~g 317 (514)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.02 Score=39.33 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=44.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCC-ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010229 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG-----FNP-KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
+...+-.+...+.+.|++++|+..|++..+.. ..+ ...++..+..++.+.|++++|.+.++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34445567777788888888888888776531 011 13456667777777777777777777776644
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.25 E-value=0.11 Score=36.79 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=32.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010229 219 VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
.+...++.....|.-++-.+++..+.+.+ ++++...-.+..+|.+.|...++.+++.+..++|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33444445555555555555555544432 44555555555555555555555555555555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.14 E-value=0.061 Score=39.50 Aligned_cols=81 Identities=10% Similarity=-0.051 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCC
Q 010229 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----AKK 477 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 477 (514)
.+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 33333444444443 334566666666665544 23334444444443 335
Q ss_pred cchHHHHHHHHHhCC
Q 010229 478 FHKVPEIYKQMESSG 492 (514)
Q Consensus 478 ~~~a~~~~~~m~~~g 492 (514)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 556666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.92 E-value=0.37 Score=33.94 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010229 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
+.-.|.+++..+++.+.... .+..-|+.++--....-+-+...++++.+-+.- |. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F---Dl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---DL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---CG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc---Cc----------hhhhcHHHH
Confidence 34456677777777776653 244555656555555555555555555543321 10 122222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+-.+ ..+...+...++...++|.-++-.+++..+.+.+ +|+....-.+..+|.+.|...++-+++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222211 1122334555666677777777777777766544 667777777777777777777777777777766
Q ss_pred CCC
Q 010229 457 GIS 459 (514)
Q Consensus 457 ~~~ 459 (514)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.29 E-value=0.28 Score=34.79 Aligned_cols=72 Identities=4% Similarity=-0.094 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010229 425 PNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
|...|--....++.+.. +.++++.+|++..+.+..-....+-.|.-+|.+.|++++|.+.++.+.+ +.|+-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 34444444455555443 3345666666655432111123445555556666666666666666665 455443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.45 E-value=0.39 Score=34.03 Aligned_cols=67 Identities=16% Similarity=-0.012 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010229 389 QPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 389 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.+...+-.....++.+.. +.++++.++++..+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 355556556666666654 4568888888887653 223 356777888899999999999999998874
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.06 E-value=0.59 Score=31.13 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010229 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
+..+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+.. +.++..+|..+++.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555554432 222333444444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.12 E-value=3.3 Score=27.46 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010229 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.-++.+-++.+......|++....+.+++|-+.+++..|..+|+-++.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444544445555555555555555555555555555555443
|