Citrus Sinensis ID: 010239
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q6AWX0 | 503 | D-xylose-proton symporter | yes | no | 0.941 | 0.962 | 0.757 | 0.0 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.939 | 0.960 | 0.713 | 0.0 | |
| Q0WWW9 | 558 | D-xylose-proton symporter | no | no | 0.935 | 0.862 | 0.597 | 1e-160 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.791 | 0.890 | 0.322 | 2e-56 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.799 | 0.899 | 0.316 | 1e-55 | |
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | no | no | 0.846 | 0.807 | 0.312 | 4e-55 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.801 | 0.871 | 0.310 | 1e-52 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.842 | 0.905 | 0.316 | 8e-51 | |
| P54723 | 482 | Putative metabolite trans | no | no | 0.799 | 0.852 | 0.309 | 4e-50 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.795 | 0.887 | 0.315 | 9e-50 |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/487 (75%), Positives = 426/487 (87%), Gaps = 3/487 (0%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ + S + GKSSGEI S + EPLI PENYSV AAILPFLFPALG
Sbjct: 1 MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKE--NHVPENYSVVAAILPFLFPALG 57
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGY+IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct: 58 GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
+GRR+ELILAALLYLVGALVTALAP + ++++GR ++G+ +GLAMHAAPMYIAETAP+P+
Sbjct: 118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY S PLAVIMG+GMWWLPASPRW
Sbjct: 178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL ++ KG++++ RE+AI LC LRG + DSA +V+EIL EL++VGEDKEV+ E+
Sbjct: 238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL KLIM
Sbjct: 298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIM 357
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG+AV+V++RLGRRPLLLGGV G+V+SLFLLGSYYLF P VAVVALLLYVGCYQLSF
Sbjct: 358 TGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSF 417
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMISE+FPL+LRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI V
Sbjct: 418 GPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICV 477
Query: 481 LSLAFIF 487
LSL FIF
Sbjct: 478 LSLVFIF 484
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/488 (71%), Positives = 416/488 (85%), Gaps = 5/488 (1%)
Query: 1 MATDPEQARARLSSFGKV-GKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
M DPE +SS G+V G SS +A++EPL+ SPENYSV AAI PFLFPAL
Sbjct: 1 MGFDPENQS--ISSVGQVVGDSSSGGITAEKEPLLKE--NHSPENYSVLAAIPPFLFPAL 56
Query: 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
G LL+GY+IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++AD
Sbjct: 57 GALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVAD 116
Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
I+GRR+ELILAA LYLVGA+VT +AP F I+++GR +G+GIGL MHAAPMYIAETAP+
Sbjct: 117 IIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQ 176
Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
+RG++ISLKEF VLGMVGGYGIGSL + +++GWRYMY P VIMG GM WLPASPR
Sbjct: 177 IRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPR 236
Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
WLLL A++ +G+ ++L+++AI LCRLRG I DSA +V+EIL ELS VGEDKE + E
Sbjct: 237 WLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFGE 296
Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 359
+F GKCLKAL I GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATR+SILLGL KL+
Sbjct: 297 LFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLV 356
Query: 360 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLS 419
MTG++V+V++R+GRRPLLL GVSG+VISLFLLGSYY+F +VPAVAV ALLLYVGCYQLS
Sbjct: 357 MTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLS 416
Query: 420 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 479
FGPIGWLMISE+FPL+LRGRG+S+AVLVNFGANALVTFAFSPLK+LLGAGILF AFGVI
Sbjct: 417 FGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVIC 476
Query: 480 VLSLAFIF 487
V+SL FI+
Sbjct: 477 VVSLFFIY 484
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 292/489 (59%), Positives = 378/489 (77%), Gaps = 8/489 (1%)
Query: 3 TDPEQARARLSSFGKVG-KSSGEIGSADEEPLIANGI-RPSPENYSVSAAILPFLFPALG 60
+ P R +VG ++ GE + E +A+ + +PE++S S+ ILPF+FPALG
Sbjct: 52 SKPGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALG 108
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI + +AD
Sbjct: 109 GLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADF 168
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRRRELI+AA+LYL+G+L+T APD I++VGR ++G GIGLAMH AP+YIAET P+ +
Sbjct: 169 LGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQI 228
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RG LISLKE FIVLG++ G+ +GS +D+V GWRYMYG TP+A++MG+GMW LPASPRW
Sbjct: 229 RGTLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRW 288
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SL 297
LLL A++ KG +Q+ +E A+ L +LRG+ GD + VD+ + ED++ +
Sbjct: 289 LLLRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNF 348
Query: 298 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFK 357
EVF G LKAL IG GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FK
Sbjct: 349 LEVFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFK 408
Query: 358 LIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQ 417
L+MT +AV V+ LGRRPLL+GGVSGI +SLFLL +YY FL P VAV ALLLYVGCYQ
Sbjct: 409 LLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQ 468
Query: 418 LSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 477
+SFGPI WLM+SE+FPLR RGRG+S+AVL NFG+NA+VTFAFSPLK+ LGA LF FG
Sbjct: 469 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGG 528
Query: 478 IAVLSLAFI 486
IA++SL F+
Sbjct: 529 IALVSLLFV 537
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Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 239/437 (54%), Gaps = 30/437 (6%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGG LYGYD G S A + ++ L++ GL+ S L GA++GS
Sbjct: 10 YFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGAILGSGA 62
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
A + D GR++ ++ AALL+ +G L ALAP+ +MV+ R + G+ +G + P+Y++
Sbjct: 63 AGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLS 122
Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
E AP RG L SL + I +G++ Y + + D A WR+M G + ++++ +G+ +
Sbjct: 123 ELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEA-WRWMLGLAAVPSLLLLIGILF 181
Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293
+P SPRWL + K A L +LRG ++D+ + ++ +
Sbjct: 182 MPESPRWLFTNGEESK---------AKKILEKLRGTK-------DIDQEIHDIKEAEKQD 225
Query: 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF-SAASDATRVSIL 352
E L+E+F ALI G GL QQ G +++YYA + GF ++AS V I
Sbjct: 226 EGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGI- 284
Query: 353 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA---VVAL 409
G ++MT +A+ +++++GR+PLLL G +G+VISL +L LF D+ PA + V+ L
Sbjct: 285 -GTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICL 343
Query: 410 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAG 469
+++ + +S+GP+ W+M+ E+FPL +RG G V+ L+ +V+ + L + +G
Sbjct: 344 GVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGIS 403
Query: 470 ILFYAFGVIAVLSLAFI 486
LF + I +++ F+
Sbjct: 404 YLFLIYAAIGIMAFLFV 420
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 234/436 (53%), Gaps = 25/436 (5%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGGLL+GYD G S A + I+ +L S + G + S L GA++G+ +
Sbjct: 10 YFFGALGGLLFGYDTGVISGAILFIQKQM-------NLGSWQQGWVVSAVLLGAILGAAI 62
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
+D GRR+ L+L+A+++ VGAL +A +P+F +++ R + G+ +G A P Y+A
Sbjct: 63 IGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLA 122
Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
E AP+ RG + SL + ++ G++ Y GWR+M G + A ++ +G
Sbjct: 123 ELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLI 182
Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293
LP SPR+L+ + G + + R ++ V++ + ++ +
Sbjct: 183 LPESPRFLV-----KSGHLDEARHVL---------DTMNKHDQVAVNKEINDIQESAKIV 228
Query: 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILL 353
E+F +LIIG GL +FQQ+ G +VLYYA +I GF S A I +
Sbjct: 229 SGGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGF-GVSAALLAHIGI 287
Query: 354 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF---LDDVPAVAVVALL 410
G+F +I+T +AV +++++ R+ ++ G G+ ISLF++ F ++V+AL
Sbjct: 288 GIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALT 347
Query: 411 LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGI 470
+Y+ + ++GP+ W+MI EVFPL +RG G S A ++N+ AN +V+ F L D G G
Sbjct: 348 VYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGS 407
Query: 471 LFYAFGVIAVLSLAFI 486
LF +G++ S+ F+
Sbjct: 408 LFIGYGILCFASIWFV 423
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Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 241/464 (51%), Gaps = 29/464 (6%)
Query: 40 PSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI 99
P NY+ + AIL ++ +L GYDIG S A I I+ ++ ++IG++
Sbjct: 30 PKRNNYAFACAILA----SMTSILLGYDIGVMSGAMIYIKRD-------LKINDLQIGIL 78
Query: 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGI 159
+LIGS A +D +GRR ++LA ++ GA++ L+P++ ++ GRF+ GI
Sbjct: 79 AGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGI 138
Query: 160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY--GIGSLLVDLVAGWRYMY 217
G+G A+ AP+Y AE +P RG L S E FI G++ GY + + L GWR M
Sbjct: 139 GVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLML 198
Query: 218 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDL--RESAISCLCRLRGQSIGDSA 275
G +VI+ +G+ +P SPRWL++ R GD + + + S LR + I +A
Sbjct: 199 GIGAVPSVILAIGVLAMPESPRWLVMQG--RLGDAKRVLDKTSDSPTEATLRLEDIKHAA 256
Query: 276 --PTEVDEILTELSYVGEDKEVSLREVF---HGKCLKALIIGAGLVLFQQITGQPSVLYY 330
P + + + ++S E RE+ + +I G+ FQQ +G +V+ +
Sbjct: 257 GIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLF 316
Query: 331 AASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFL 390
+ I ++AG ++ +G+ K +A +++R+GRRPLLL V G+V+SL
Sbjct: 317 SPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAA 376
Query: 391 LGSYYLFLDDVPA-------VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 443
LG+ +D VA+ ++ YV + + GPI W+ SE+FPLRLR +G S+
Sbjct: 377 LGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSM 436
Query: 444 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
V+VN + +++ +F P+ + G FY FG IA ++ F +
Sbjct: 437 GVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFY 480
|
Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 237/441 (53%), Gaps = 29/441 (6%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
L GGLL+GYD G + A P + +L++ GL+TS L+GA +G++
Sbjct: 16 LVSTFGGLLFGYDTGVLNGAL-----PYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFG 70
Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174
++D GRR+ ++ A+++ + + AP+ +M++ RFV GI +G A P Y+AE
Sbjct: 71 GRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAE 130
Query: 175 TAPTPMRGQLISLKEFFIVLGMVGGYG----IGSLLVDLVAGWRYMYGASTPLAVIMGMG 230
+P RG++++ E IV G + + +G+ + D WR+M ++ A+ + G
Sbjct: 131 MSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFG 190
Query: 231 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 290
M +P SPRWL+ KG +E A+ L ++R + A E+ EI E ++
Sbjct: 191 MIRMPESPRWLV-----SKGR----KEDALRVLKKIRDE---KRAAAELQEI--EFAFKK 236
Query: 291 EDK--EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATR 348
ED+ + + +++ + + IG G+ + QQITG S++YY IL+++GF + A
Sbjct: 237 EDQLEKATFKDLSVPWVRRIVFIGLGIAIVQQITGVNSIMYYGTEILRNSGFQTEA-ALI 295
Query: 349 VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 408
+I G+ ++ T + + ++ R+GRRP+L+ G+ G +L L+G + L L+ PA+ V
Sbjct: 296 GNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLVLEGSPALPYVV 355
Query: 409 LLL---YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 465
L L ++ Q + P+ WLM+SE+FPLRLRG G+ V V + N V+F F L
Sbjct: 356 LSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAA 415
Query: 466 LGAGILFYAFGVIAVLSLAFI 486
+G F+ F + + S+ F+
Sbjct: 416 IGLSTTFFIFVGLGICSVLFV 436
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 235/467 (50%), Gaps = 34/467 (7%)
Query: 27 SADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGI 86
S +E L E + IL G +G +G TS A I I
Sbjct: 12 SIEERLLQLKNQNDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKD----- 66
Query: 87 SWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146
DLS + S S GA IG++ + +A ILGRR+ + ++ LL ++G A A D
Sbjct: 67 --LDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKD 124
Query: 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206
+ + GR GIG+GL + P+YIAE +P +RG + G+ Y G+ L
Sbjct: 125 VMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFL 184
Query: 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRL 266
WR + I +G++++P SPRWL + G ++L S L RL
Sbjct: 185 -----NWRILALLGALPCFIQVIGLFFVPESPRWL-----AKVGSDKELENS----LLRL 230
Query: 267 RGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPS 326
RG + S E++T++ V D + S ++F K L++G GL+L QQ +G +
Sbjct: 231 RGGNADISREASDIEVMTKM--VENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSA 288
Query: 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 386
VL YA++IL+ AGFS +T LLGLF + + V++V++ GRRPLLL VSG+ I
Sbjct: 289 VLSYASTILRKAGFSVTIGST----LLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCI 344
Query: 387 SLFLLGSYY------LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG 440
+ L+G + L + P + + LY+G Y + G + W+++SE+FP+ ++
Sbjct: 345 TSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTA 404
Query: 441 LSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
S+ LV++ ++++VT+AF+ L + G FY FG + L+L FI+
Sbjct: 405 GSIVTLVSWSSSSIVTYAFNFLLEWSTQGT-FYVFGAVGGLALLFIW 450
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 228/440 (51%), Gaps = 29/440 (6%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILA 114
L GGLL+GYD G + A P ++ +L+ V GL+ S L GA G++
Sbjct: 26 LVSTFGGLLFGYDTGVINGAL-----PFMATAGQLNLTPVTEGLVASSLLLGAAFGAMFG 80
Query: 115 FNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174
++D GRR+ ++ ALL++ L +P+ +M+ RF+ G+ +G A P ++AE
Sbjct: 81 GRLSDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAE 140
Query: 175 TAPTPMRGQLISLKEFFIVLGMVGGYG----IGSLLVDLVAGWRYMYGASTPLAVIMGMG 230
+P RG++++ E IV+G + Y IGS + + WRYM +T AV++ G
Sbjct: 141 ISPAERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFG 200
Query: 231 MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 290
M +P SPRW L A R GD A+ L ++R S A E+ EI + G
Sbjct: 201 MLIVPESPRW--LAAKGRMGD-------ALRVLRQIREDS---QAQQEIKEIKHAIE--G 246
Query: 291 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRV- 349
K+ + + L IG G+ + QQITG S++YY IL+ AGF ++A +
Sbjct: 247 TAKKAGFHDFQEPWIRRILFIGIGIAIVQQITGVNSIMYYGTEILREAGFQ--TEAALIG 304
Query: 350 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVAL 409
+I G+ +I + ++ ++ RRP+L+ G G + +L L+G + L+ PA+ V L
Sbjct: 305 NIANGVISVIAVIFGIWLLGKVRRRPMLIIGQIGTMTALLLIGILSIVLEGTPALPYVVL 364
Query: 410 ---LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 466
+L++ Q + + WLM+SE+FP+ +RG G+ ++ + AN L+ F F L + +
Sbjct: 365 SLTILFLAFQQTAISTVTWLMLSEIFPMHVRGLGMGISTFCLWTANFLIGFTFPILLNHI 424
Query: 467 GAGILFYAFGVIAVLSLAFI 486
G F+ F + +L++ F+
Sbjct: 425 GMSATFFIFVAMNILAILFV 444
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 235/438 (53%), Gaps = 29/438 (6%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
+ F ALGGLLYGYD G S A + I + L+++ GL+ S L GA+ GS L
Sbjct: 11 YFFGALGGLLYGYDTGVISGALLFINNDI-------PLTTLTEGLVVSMLLLGAIFGSAL 63
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
+ +D GRR+ + + ++++++GAL A + +++ R + G+ +G + P+Y++
Sbjct: 64 SGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLS 123
Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
E APT +RG L ++ IV G++ Y + L A WR+M G + AV++ +G+ +
Sbjct: 124 EMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAF 182
Query: 234 LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293
+P SPRWL+ ++G ++ R R +I P +++ L E+ +K
Sbjct: 183 MPESPRWLV-----KRGSEEEAR----------RIMNITHD-PKDIEMELAEMKQGEAEK 226
Query: 294 EVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSIL 352
+ + V K ++ L+IG GL +FQQ G +V+YYA +I AG ++ A ++
Sbjct: 227 KETTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG-TMG 285
Query: 353 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA---VVAL 409
+G+ +IM A+++++R+GR+ LL+ G GI +SL L L L + A VV L
Sbjct: 286 IGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFL 345
Query: 410 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAG 469
+Y+ YQ ++GP+ W+++ E+FP + RG LV AN +V+ F + +G
Sbjct: 346 GVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIA 405
Query: 470 ILFYAFGVIAVLSLAFIF 487
+F F VI +LS F F
Sbjct: 406 WVFMVFSVICLLSFFFAF 423
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| 224144970 | 502 | predicted protein [Populus trichocarpa] | 0.939 | 0.962 | 0.850 | 0.0 | |
| 118486465 | 502 | unknown [Populus trichocarpa] | 0.939 | 0.962 | 0.850 | 0.0 | |
| 255557987 | 502 | sugar transporter, putative [Ricinus com | 0.935 | 0.958 | 0.792 | 0.0 | |
| 449438795 | 502 | PREDICTED: D-xylose-proton symporter-lik | 0.922 | 0.944 | 0.789 | 0.0 | |
| 356538461 | 501 | PREDICTED: D-xylose-proton symporter-lik | 0.937 | 0.962 | 0.780 | 0.0 | |
| 225454803 | 500 | PREDICTED: D-xylose-proton symporter-lik | 0.931 | 0.958 | 0.811 | 0.0 | |
| 297811841 | 502 | sugar transporter family protein [Arabid | 0.937 | 0.960 | 0.764 | 0.0 | |
| 357474255 | 501 | D-xylose-proton symporter-like protein [ | 0.937 | 0.962 | 0.757 | 0.0 | |
| 388501928 | 501 | unknown [Medicago truncatula] | 0.937 | 0.962 | 0.753 | 0.0 | |
| 356544341 | 497 | PREDICTED: D-xylose-proton symporter-lik | 0.929 | 0.961 | 0.774 | 0.0 |
| >gi|224144970|ref|XP_002325479.1| predicted protein [Populus trichocarpa] gi|222862354|gb|EEE99860.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/487 (85%), Positives = 446/487 (91%), Gaps = 4/487 (0%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ LSS GKVGKSSGEIG EEPL+ GI S ENYS+++AI PFLFPALG
Sbjct: 1 MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLASAIFPFLFPALG 56
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD
Sbjct: 57 GLLYGYDIGSTSCATISIQSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 356
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG AVLVV+RLGRRPLLLGGVSG+VISLFLLGSYY+FLD+ P VAV ALLLYVGCYQLSF
Sbjct: 357 TGTAVLVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAPVVAVAALLLYVGCYQLSF 416
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMISE+FPLRLRGRGL +AVLVNFGANALVTF FSPLK LLGAGILFYAFGVIAV
Sbjct: 417 GPIGWLMISEIFPLRLRGRGLGIAVLVNFGANALVTFTFSPLKALLGAGILFYAFGVIAV 476
Query: 481 LSLAFIF 487
+SL FIF
Sbjct: 477 VSLLFIF 483
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486465|gb|ABK95072.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/487 (85%), Positives = 445/487 (91%), Gaps = 4/487 (0%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DPEQ LSS GKVGKSSGEIG EEPL+ GI S ENYS+ +AI PFLFPALG
Sbjct: 1 MAPDPEQPT--LSSLGKVGKSSGEIGGV-EEPLLNGGIHTS-ENYSLVSAIFPFLFPALG 56
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLLYGYDIGSTSCATISI+S TLSGISWY+L+SV+IGLITSGSLYGALIGS+LAFNIAD
Sbjct: 57 GLLYGYDIGSTSCATISIKSATLSGISWYNLNSVDIGLITSGSLYGALIGSVLAFNIADF 116
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRRRELILAA LYLVGALVTALAP F +MV+GRFVFGIGIGLAMHAAPMYIAETAP+ +
Sbjct: 117 LGRRRELILAAFLYLVGALVTALAPAFAVMVIGRFVFGIGIGLAMHAAPMYIAETAPSHI 176
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQLISLKEFFIVLGMVGGYGIGSLLVD VAGWRYMY ASTPLAVIMG+GMWWLPASPRW
Sbjct: 177 RGQLISLKEFFIVLGMVGGYGIGSLLVDTVAGWRYMYVASTPLAVIMGIGMWWLPASPRW 236
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL A++ KG MQ+LRE+AI CLCRLRG++IGD+AP +VDEIL EL+ VGE+KEV+L EV
Sbjct: 237 LLLRAIQGKGSMQELRETAICCLCRLRGEAIGDTAPAKVDEILAELAVVGEEKEVTLAEV 296
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKAL IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM
Sbjct: 297 FRGKCLKALTIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 356
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG AVLVV+RLGRRPLLLGGVSG+VISLFLLGSYY+FLD+ P VAV ALLLYVGCYQLSF
Sbjct: 357 TGTAVLVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAPVVAVAALLLYVGCYQLSF 416
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMISE+FPLRLRGRGL +AVLVNFGANALVTF FSPLK LLGAGILFYAFGVIAV
Sbjct: 417 GPIGWLMISEIFPLRLRGRGLGIAVLVNFGANALVTFTFSPLKALLGAGILFYAFGVIAV 476
Query: 481 LSLAFIF 487
+SL FIF
Sbjct: 477 VSLLFIF 483
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557987|ref|XP_002520022.1| sugar transporter, putative [Ricinus communis] gi|223540786|gb|EEF42346.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/486 (79%), Positives = 435/486 (89%), Gaps = 5/486 (1%)
Query: 2 ATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGG 61
ATD EQ SS GKVGKSSGEI A EEPL+ G S E YS+ AA+LPFLFPALGG
Sbjct: 3 ATDLEQPS--FSSLGKVGKSSGEIDGA-EEPLLNGG--SSSEYYSILAAVLPFLFPALGG 57
Query: 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121
LLYGYDIG+TSCATI+IES T SGISWY+L++V++GLITSGSLYGALIGS++AFNIAD L
Sbjct: 58 LLYGYDIGATSCATITIESATSSGISWYNLNAVQLGLITSGSLYGALIGSVVAFNIADFL 117
Query: 122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR 181
GRRRELI+AALLYLVGALVT LAPDF++MV+GRFV+GIGIGLAMHAAPMYIAETAP+ +R
Sbjct: 118 GRRRELIVAALLYLVGALVTGLAPDFVVMVIGRFVYGIGIGLAMHAAPMYIAETAPSQIR 177
Query: 182 GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWL 241
G+LISLKEFFIVLGMV GYG+GSLLVD+V GWRYMY AS PLAVIMG+GMW LP SPRW+
Sbjct: 178 GRLISLKEFFIVLGMVAGYGVGSLLVDIVRGWRYMYVASAPLAVIMGVGMWCLPQSPRWI 237
Query: 242 LLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 301
LLCAM+ KG+MQDL+E+AI CLC+LRG +IGD+AP V+E+L+EL++VGE+KE SLR++F
Sbjct: 238 LLCAMQGKGNMQDLKETAICCLCKLRGGAIGDAAPALVEEMLSELAFVGEEKETSLRDLF 297
Query: 302 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
GKCLKAL IGAGLV+FQQITGQPSVLYYA SI QSAGFSAASDATRVSILLGL KLIMT
Sbjct: 298 KGKCLKALTIGAGLVIFQQITGQPSVLYYAGSIFQSAGFSAASDATRVSILLGLLKLIMT 357
Query: 362 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421
G AV+ V+RLGRRPLLL GVSG+ ISLFLLGSYY FL+DVPAVAVVALLLYVGCYQ SFG
Sbjct: 358 GGAVVAVDRLGRRPLLLTGVSGMAISLFLLGSYYRFLNDVPAVAVVALLLYVGCYQFSFG 417
Query: 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVL 481
PIGWLMISE+FPLRLRGR L +AVLVNFGANA+VTFAFSPLK L+GAGILFY FGVI+V+
Sbjct: 418 PIGWLMISEIFPLRLRGRALGIAVLVNFGANAIVTFAFSPLKALIGAGILFYGFGVISVV 477
Query: 482 SLAFIF 487
SL FIF
Sbjct: 478 SLLFIF 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438795|ref|XP_004137173.1| PREDICTED: D-xylose-proton symporter-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 433/476 (90%), Gaps = 2/476 (0%)
Query: 12 LSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGST 71
LSS GKVG+SSGEI + EEPLI+ + S EN+S AAILPFLFPALGGLLYGYDIG+T
Sbjct: 10 LSSLGKVGQSSGEIDNV-EEPLISVEFKHS-ENFSARAAILPFLFPALGGLLYGYDIGAT 67
Query: 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131
SCATIS++S + SGISWY+LSSVE+GL+TSGSLYGALIGS+LAFN+AD LGRRRELIL+A
Sbjct: 68 SCATISLQSASSSGISWYNLSSVEVGLVTSGSLYGALIGSVLAFNVADFLGRRRELILSA 127
Query: 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191
L+YLVGA++T LAP+F+I+++GR + G GIGLAMHAAPMYIAET+P+ +RGQ+ISLKEFF
Sbjct: 128 LMYLVGAIITGLAPNFVILIIGRIISGTGIGLAMHAAPMYIAETSPSKIRGQMISLKEFF 187
Query: 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGD 251
IVLGMV GY IGSLLV++VAGWRY+Y A+TP+A++MG+GMWWLP+SPRWLLLCA++RKG+
Sbjct: 188 IVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGN 247
Query: 252 MQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALII 311
M DL+E AISCL RLRG IG++A EV+EIL ELS++GE +E S+ E+F GKCLKALII
Sbjct: 248 MADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALII 307
Query: 312 GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL 371
GAGLVLFQQITGQPSVLYYA SI QSAGFSAA+DATRVSILLGL KLIMTG AVLVV+RL
Sbjct: 308 GAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLLKLIMTGAAVLVVDRL 367
Query: 372 GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 431
GRRPLLLGGVSGI ISLFLLGSYYLFL +VPAVAVVALLLYVG YQLSFGPIGWLMISEV
Sbjct: 368 GRRPLLLGGVSGITISLFLLGSYYLFLGNVPAVAVVALLLYVGSYQLSFGPIGWLMISEV 427
Query: 432 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF+ FGV+A+LSL FIF
Sbjct: 428 FPLRLRGRGLSIAVLVNFGANALVTFAFSPLKELLGAGILFFIFGVVAILSLVFIF 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538461|ref|XP_003537722.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/487 (78%), Positives = 432/487 (88%), Gaps = 5/487 (1%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ SSF K +S GEIGSA E PL+ NG+ S E+YSVSAAILPFLFPALG
Sbjct: 1 MASDPEQPAH--SSFAKEARSGGEIGSAIE-PLL-NGVHDS-ESYSVSAAILPFLFPALG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+SPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD
Sbjct: 56 GLLFGYDIGATSSATISIQSPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSLLAFNVADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRR+ELI AA++YLVGALVTALAP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRKELIGAAVVYLVGALVTALAPNFPVLVLGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQLISLKEFFIVLGMV GYGIGSL V+ V+GWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 176 RGQLISLKEFFIVLGMVAGYGIGSLFVETVSGWRYMYGVSSPVAIIMGVGMWWLPASPRW 235
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL A++ KGD+Q+ ++ AI LC+LRGQ+ DS P +VDEIL ELSY+GE+KE + E+
Sbjct: 236 LLLRAIQGKGDVQNSKDIAIRSLCQLRGQAFYDSVPWQVDEILAELSYLGEEKEATFGEL 295
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKAL IG+GLVLFQQITGQPSVLYYA SI QSAGFS ASDATRVSILLG FKLIM
Sbjct: 296 FQGKCLKALWIGSGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGFFKLIM 355
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG+AV+VV++LGRRPLLLGGVSGIVISLF LGSYY+FLD+ P VAV+ LLLYVG YQ+SF
Sbjct: 356 TGVAVVVVDKLGRRPLLLGGVSGIVISLFFLGSYYIFLDNSPVVAVIGLLLYVGSYQISF 415
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMI+E+FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK LLGAGILFY F VIAV
Sbjct: 416 GPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKALLGAGILFYTFCVIAV 475
Query: 481 LSLAFIF 487
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454803|ref|XP_002277076.1| PREDICTED: D-xylose-proton symporter-like 2 [Vitis vinifera] gi|297737329|emb|CBI26530.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/484 (81%), Positives = 437/484 (90%), Gaps = 5/484 (1%)
Query: 4 DPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLL 63
D EQ L+S GKVGKSSGEI +EPLI +G+ S ENYSV+AAILPFLFPALGGLL
Sbjct: 3 DLEQPS--LTSLGKVGKSSGEI-DGMQEPLI-DGVGSS-ENYSVAAAILPFLFPALGGLL 57
Query: 64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123
YGYDIG+TSCA ISIES +LSGISWYDLSSV+IGL TSGSLYGALIGS+LAFNIAD GR
Sbjct: 58 YGYDIGATSCALISIESSSLSGISWYDLSSVQIGLTTSGSLYGALIGSVLAFNIADFFGR 117
Query: 124 RRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ 183
RRELILAALLYLVGALVTA+AP FI+MV+GRFVFGIGIGL+MHAAPMYIAETAPT +RG+
Sbjct: 118 RRELILAALLYLVGALVTAVAPSFIVMVIGRFVFGIGIGLSMHAAPMYIAETAPTQIRGR 177
Query: 184 LISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243
LISLKEFFIVLGMV GY +GSLLVD+V+GWRYMYG S+PL+VIMG+GMWWLPASPRWLLL
Sbjct: 178 LISLKEFFIVLGMVVGYTVGSLLVDMVSGWRYMYGVSSPLSVIMGIGMWWLPASPRWLLL 237
Query: 244 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303
A++ KG+MQDL+E+AI CLCRLRG +IGDSAP +VD IL ELS E KE SL E+FHG
Sbjct: 238 RAIQGKGNMQDLKENAIFCLCRLRGPAIGDSAPAQVDGILDELSSSEETKEASLGEMFHG 297
Query: 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGL 363
KCLKAL IG GLVLFQQITGQPSVLYYAASIL+SAGFS ASDATRVSIL+GL KLIMT +
Sbjct: 298 KCLKALTIGGGLVLFQQITGQPSVLYYAASILESAGFSGASDATRVSILVGLLKLIMTAV 357
Query: 364 AVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPI 423
AVLVV+++GRRPLLLGGVSGIVISLFLLGSYY++L D PAVAV+ALLLYVGCYQLSFGPI
Sbjct: 358 AVLVVDKVGRRPLLLGGVSGIVISLFLLGSYYIYLGDAPAVAVIALLLYVGCYQLSFGPI 417
Query: 424 GWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483
GWLMISE+FPLR+RGRGLS+AVLVNFGANA+VTF+FSPLK LLGAG+LFY FGVIAVLSL
Sbjct: 418 GWLMISEIFPLRVRGRGLSIAVLVNFGANAIVTFSFSPLKALLGAGVLFYGFGVIAVLSL 477
Query: 484 AFIF 487
FIF
Sbjct: 478 LFIF 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811841|ref|XP_002873804.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319641|gb|EFH50063.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/488 (76%), Positives = 430/488 (88%), Gaps = 6/488 (1%)
Query: 1 MATDPEQARARLSSFGK-VGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPAL 59
MA DPEQ +SS + VGKS GEI SA+ EPLI +PENYSV AAILPF FPAL
Sbjct: 1 MALDPEQQP--ISSVSREVGKSDGEI-SAEREPLIKE--NHTPENYSVVAAILPFFFPAL 55
Query: 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD 119
GGLLYGY+IG+TSCATIS++SP+LSGISWY+L+SV++GL+TSGSLYGAL GSI+AF IAD
Sbjct: 56 GGLLYGYEIGATSCATISLQSPSLSGISWYNLTSVDVGLVTSGSLYGALFGSIVAFTIAD 115
Query: 120 ILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179
++GRR+ELILAALLYLVGALVTALAP + ++++GR +G+ +GLAMHAAPMYIAETAP+P
Sbjct: 116 VIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVTYGVSVGLAMHAAPMYIAETAPSP 175
Query: 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239
+RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY S PLAVIMG+GMWWLPASPR
Sbjct: 176 IRGQLVSLKEFFIVLGMVGGYGIGSLTVNIHSGWRYMYATSVPLAVIMGIGMWWLPASPR 235
Query: 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299
WLLL ++ KG++++ RESAI LCRLRG + DSA +V+EIL EL++VGEDKEV+ E
Sbjct: 236 WLLLRVIQGKGNVENQRESAIKSLCRLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGE 295
Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 359
+FHGKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL KLI
Sbjct: 296 LFHGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLI 355
Query: 360 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLS 419
MTG+AV+V++RLGRRPLLLGGVSG+V+SLFLLGSYYLF P VAVVALLLYVGCYQLS
Sbjct: 356 MTGVAVVVIDRLGRRPLLLGGVSGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLS 415
Query: 420 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 479
FGPIGWLMISE+FPL+LRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI
Sbjct: 416 FGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVIC 475
Query: 480 VLSLAFIF 487
VLSL FIF
Sbjct: 476 VLSLVFIF 483
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474255|ref|XP_003607412.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|357474261|ref|XP_003607415.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508467|gb|AES89609.1| D-xylose-proton symporter-like protein [Medicago truncatula] gi|355508470|gb|AES89612.1| D-xylose-proton symporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/487 (75%), Positives = 436/487 (89%), Gaps = 5/487 (1%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ LSSF + GKSS E+ S + EPL+ NGI P++YS+SAAILPFLFPA G
Sbjct: 1 MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD
Sbjct: 56 GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRRREL++AAL+YLVGAL+TA AP+F ++V+GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLVIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
+LL A+++KGD+Q L+++AI LC+L+G++ DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FKLIM
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKLIM 355
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG+AV+VV+RLGRRPLLLGGVSGIVISLFLLGSYY+FLD+ +AVV LLLYVGCYQ+SF
Sbjct: 356 TGVAVVVVDRLGRRPLLLGGVSGIVISLFLLGSYYIFLDNAAVLAVVGLLLYVGCYQISF 415
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GP+GWLMI+E+FPLRLRG+GLS+AVLVNF ANALVTFAFSPLKDLLGAGILFY F IAV
Sbjct: 416 GPMGWLMIAEIFPLRLRGKGLSIAVLVNFAANALVTFAFSPLKDLLGAGILFYIFSAIAV 475
Query: 481 LSLAFIF 487
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388501928|gb|AFK39030.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/487 (75%), Positives = 435/487 (89%), Gaps = 5/487 (1%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA+DPEQ LSSF + GKSS E+ S + EPL+ NGI P++YS+SAAILPFLFPA G
Sbjct: 1 MASDPEQPP--LSSFSQEGKSSTEVRS-EREPLL-NGIH-VPQDYSLSAAILPFLFPAFG 55
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISI+S +LSGI+WYDL +VEIGL+TSGSLYGALIGS+LAFNIAD
Sbjct: 56 GLLFGYDIGATSSATISIQSSSLSGITWYDLDAVEIGLLTSGSLYGALIGSVLAFNIADF 115
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRRREL++AAL+YLVGAL+TA AP+F ++++GR VFGIGIGLAMHAAPMYIAETAPTP+
Sbjct: 116 LGRRRELLVAALMYLVGALITAFAPNFPLLLIGRLVFGIGIGLAMHAAPMYIAETAPTPI 175
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQL+SLKEFFIV+G+V GYG+GSLLVD VAGWRYM+G S+P+AVIMG GMWWLPASPRW
Sbjct: 176 RGQLVSLKEFFIVIGIVAGYGLGSLLVDTVAGWRYMFGISSPVAVIMGFGMWWLPASPRW 235
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
+LL A+++KGD+Q L+++AI LC+L+G++ DSAP +VDEI+ E SY+GE+ +V+L E+
Sbjct: 236 ILLRAIQKKGDLQTLKDTAIRSLCQLQGRTFHDSAPQQVDEIMAEFSYLGEENDVTLGEM 295
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKC KAL+I AGLVLFQQITGQPSVLYYAASILQSAGFS A+DATRVSILLG+FKLIM
Sbjct: 296 FRGKCRKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSILLGVFKLIM 355
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG+AV+VV+RLGRRPLLLGGVSGIVISLFLLGSYY+FLD+ +AVV LLLYVGCYQ+SF
Sbjct: 356 TGVAVVVVDRLGRRPLLLGGVSGIVISLFLLGSYYIFLDNAAVLAVVGLLLYVGCYQISF 415
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GP+GWLMI+E+FPLRLRG+GLS+AV VNF ANALVTFAFSPLKDLLGAGILFY F IAV
Sbjct: 416 GPMGWLMIAEIFPLRLRGKGLSIAVFVNFAANALVTFAFSPLKDLLGAGILFYIFSAIAV 475
Query: 481 LSLAFIF 487
SL FI+
Sbjct: 476 ASLVFIY 482
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544341|ref|XP_003540611.1| PREDICTED: D-xylose-proton symporter-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/487 (77%), Positives = 427/487 (87%), Gaps = 9/487 (1%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAILPFLFPALG 60
MA DP Q A K +S GEI SA EPL+ NG+ S E+YSVSAAILPFLFPALG
Sbjct: 1 MAFDPVQPVA------KKARSGGEIVSA-REPLL-NGVHDS-ESYSVSAAILPFLFPALG 51
Query: 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
GLL+GYDIG+TS ATISIESPTLSG+SWY LSSVEIGL+TSGSLYGALIGS+LAFN+AD
Sbjct: 52 GLLFGYDIGATSSATISIESPTLSGVSWYKLSSVEIGLLTSGSLYGALIGSVLAFNVADF 111
Query: 121 LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180
LGRR+ELI +A++YLVGALVTALAP+F ++V+GR VFG GIGLAMHAAPMYIAETAPTP+
Sbjct: 112 LGRRKELIGSAVVYLVGALVTALAPNFPVLVLGRLVFGTGIGLAMHAAPMYIAETAPTPI 171
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQLISLKEFFIVLGMV GYGIGSL V+ VAGWRYMYG S+P+A+IMG+GMWWLPASPRW
Sbjct: 172 RGQLISLKEFFIVLGMVAGYGIGSLFVETVAGWRYMYGVSSPMAIIMGLGMWWLPASPRW 231
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL A++ KGD+Q+ ++ I LC+L+GQ+ DS P +VDEIL ELSY+GE+KE + E+
Sbjct: 232 LLLRAIQGKGDVQNSKDIVIRSLCQLQGQAFNDSIPWQVDEILAELSYLGEEKEATFGEL 291
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKAL IGAGLVLFQQITGQPSVLYYA SI QSAGFS ASDATRVSILLG+FKLIM
Sbjct: 292 FQGKCLKALWIGAGLVLFQQITGQPSVLYYAGSIFQSAGFSGASDATRVSILLGVFKLIM 351
Query: 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420
TG+AV+VV++LGRRPLLLGGVSGIVISLF LGSYY+FLD+ P VAVV LLLYVG YQ+SF
Sbjct: 352 TGVAVVVVDKLGRRPLLLGGVSGIVISLFFLGSYYIFLDNTPVVAVVGLLLYVGSYQISF 411
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMI+E+FPLRLRGRGLS+AVLVNFGANALVTFAFSPLK LLGAGILFY FGVIAV
Sbjct: 412 GPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKALLGAGILFYTFGVIAV 471
Query: 481 LSLAFIF 487
SL FI+
Sbjct: 472 TSLVFIY 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.939 | 0.960 | 0.611 | 3.5e-146 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.935 | 0.956 | 0.579 | 3.6e-137 | |
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.931 | 0.858 | 0.472 | 1.8e-110 | |
| UNIPROTKB|F1S3R3 | 621 | SLC2A12 "Uncharacterized prote | 0.498 | 0.412 | 0.311 | 8.8e-39 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.498 | 0.412 | 0.311 | 2e-38 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.498 | 0.412 | 0.307 | 1.9e-36 | |
| UNIPROTKB|Q8TD20 | 617 | SLC2A12 "Solute carrier family | 0.496 | 0.413 | 0.313 | 2.9e-36 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.5 | 0.555 | 0.285 | 1.6e-35 | |
| UNIPROTKB|F1PA43 | 614 | SLC2A12 "Uncharacterized prote | 0.498 | 0.416 | 0.307 | 2.9e-35 | |
| UNIPROTKB|F1P4J7 | 561 | SLC2A12 "Uncharacterized prote | 0.498 | 0.456 | 0.300 | 2.9e-35 |
| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 297/486 (61%), Positives = 342/486 (70%)
Query: 1 MATDPEQARARLSSFGKVGKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXXXX 60
MA DPEQ + S + GKSSGEI S + EPLI PENYSV AAI
Sbjct: 1 MALDPEQQQPISSVSREFGKSSGEI-SPEREPLIKEN--HVPENYSVVAAILPFLFPALG 57
Query: 61 XXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI 120
+IG+TSCATIS++SP+LSGISWY+LSSV++GL+TSGSLYGAL GSI+AF IAD+
Sbjct: 58 GLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADV 117
Query: 121 LGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPM 180
+GRR+E P LAMHAAPMYIAETAP+P+
Sbjct: 118 IGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPI 177
Query: 181 RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRW 240
RGQL+SLKEFFIVLGMVGGYGIGSL V++ +GWRYMY S PLAVIMG+GMWWLPASPRW
Sbjct: 178 RGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRW 237
Query: 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300
LLL ++ KG++++ RE+AI LC LRG + DSA +V+EIL EL++VGEDKEV+ E+
Sbjct: 238 LLLRVIQGKGNVENQREAAIKSLCCLRGPAFVDSAAEQVNEILAELTFVGEDKEVTFGEL 297
Query: 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360
F GKCLKALIIG GLVLFQQITGQPSVLYYA SILQ+AGFSAA DATRVSILLGL KLIM
Sbjct: 298 FQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIM 357
Query: 361 TGLAXXXXXXXXXXXXXXXXXXXIVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQLSF 420
TG+A +V+ P YVGCYQLSF
Sbjct: 358 TGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSF 417
Query: 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAV 480
GPIGWLMISE+FPL+LRGRGLS+AVLVNFGANALVTFAFSPLK+LLGAGILF FGVI V
Sbjct: 418 GPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICV 477
Query: 481 LSLAFI 486
LSL FI
Sbjct: 478 LSLVFI 483
|
|
| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1343 (477.8 bits), Expect = 3.6e-137, P = 3.6e-137
Identities = 283/488 (57%), Positives = 336/488 (68%)
Query: 1 MATDPEQARARLSSFGKV--GKSSGEIGSADEEPLIANGIRPSPENYSVSAAIXXXXXXX 58
M DPE +SS G+V SSG I +A++EPL+ SPENYSV AAI
Sbjct: 1 MGFDPENQS--ISSVGQVVGDSSSGGI-TAEKEPLLKEN--HSPENYSVLAAIPPFLFPA 55
Query: 59 XXXXXXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIA 118
+IG+TSCA +S++SPTLSGISWYDLSSV++G+ITSGSLYGALIGSI+AF++A
Sbjct: 56 LGALLFGYEIGATSCAIMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVA 115
Query: 119 DILGRRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPT 178
DI+GRR+E P L MHAAPMYIAETAP+
Sbjct: 116 DIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPS 175
Query: 179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238
+RG++ISLKEF VLGMVGGYGIGSL + +++GWRYMY P VIMG GM WLPASP
Sbjct: 176 QIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASP 235
Query: 239 RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 298
RWLLL A++ +G+ ++L+++AI LCRLRG I DSA +V+EIL ELS VGEDKE +
Sbjct: 236 RWLLLRALQGQGNGENLQQAAIRSLCRLRGSVIADSAAEQVNEILAELSLVGEDKEATFG 295
Query: 299 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKL 358
E+F GKCLKAL I GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATR+SILLGL KL
Sbjct: 296 ELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKL 355
Query: 359 IMTGLAXXXXXXXXXXXXXXXXXXXIVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQL 418
+MTG++ +VI VP YVGCYQL
Sbjct: 356 VMTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQL 415
Query: 419 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 478
SFGPIGWLMISE+FPL+LRGRG+S+AVLVNFGANALVTFAFSPLK+LLGAGILF AFGVI
Sbjct: 416 SFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVI 475
Query: 479 AVLSLAFI 486
V+SL FI
Sbjct: 476 CVVSLFFI 483
|
|
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 230/487 (47%), Positives = 301/487 (61%)
Query: 5 PEQARARLSSFGKVG-KSSGEIGSADEEPLIANGIRP-SPENYSVSAAIXXXXXXXXXXX 62
P R +VG ++ GE + E +A+ + +PE++S S+ I
Sbjct: 54 PGLVTTRYRHIFQVGAETGGEFADSGE---VADSLASDAPESFSWSSVILPFIFPALGGL 110
Query: 63 XXXXDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122
DIG+TS AT+S++SP LSG +W++ S V++GL+ SGSLYGAL+GSI + +AD LG
Sbjct: 111 LFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLG 170
Query: 123 RRREXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRG 182
RRRE PD LAMH AP+YIAET P+ +RG
Sbjct: 171 RRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRG 230
Query: 183 QLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLL 242
LISLKE FIVLG++ G+ +GS +D+V GWRYMYG TP+A++MG+GMW LPASPRWLL
Sbjct: 231 TLISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLL 290
Query: 243 LCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE-VDEILTELSYVGEDKEV--SLRE 299
L A++ KG +Q+ +E A+ L +LRG+ GD + VD+ + ED++ + E
Sbjct: 291 LRAVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLE 350
Query: 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 359
VF G LKAL IG GLVLFQQITGQPSVLYYA SILQ+AGFSAA+DATRVS+++G+FKL+
Sbjct: 351 VFQGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLL 410
Query: 360 MTGLAXXXXXXXXXXXXXXXXXXXIVIXXXXXXXXXXXXXXVPXXXXXXXXXYVGCYQLS 419
MT +A I + P YVGCYQ+S
Sbjct: 411 MTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQIS 470
Query: 420 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 479
FGPI WLM+SE+FPLR RGRG+S+AVL NFG+NA+VTFAFSPLK+ LGA LF FG IA
Sbjct: 471 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIA 530
Query: 480 VLSLAFI 486
++SL F+
Sbjct: 531 LVSLLFV 537
|
|
| UNIPROTKB|F1S3R3 SLC2A12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 8.8e-39, Sum P(2) = 8.8e-39
Identities = 85/273 (31%), Positives = 134/273 (49%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
L+ E ++ S L GAL+ S++ + D GRR
Sbjct: 78 LTCHEQEMVVSSLLIGALLASLVGGVVIDRYGRRAAIILSSCLLGVGSLVLIVTLSYAAL 137
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y ++
Sbjct: 138 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYVSNYTFANIS 197
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR +
Sbjct: 198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGQ----EEAASKVLGKLR--A 246
Query: 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
+ D PTE E+ S + ++ + S ++F K ++IG LV F QITGQP++L
Sbjct: 247 VSD--PTE--ELTAIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
+YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 303 FYASTVLKSVGFQSNEAASLASTGVGVVKVIGT 335
|
|
| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 85/273 (31%), Positives = 134/273 (49%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
L+ E ++ S L GAL+ S++ + D GRR
Sbjct: 78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y ++
Sbjct: 138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR +
Sbjct: 198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246
Query: 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
I D+ TE E+ S + ++ + S ++F K ++IG LV F QITGQP++L
Sbjct: 247 ISDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLMLVFFVQITGQPNIL 302
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
+YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 303 FYASTVLKSVGFQSNEAASLASTGVGVVKVIST 335
|
|
| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 84/273 (30%), Positives = 134/273 (49%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
L+ E ++ S L GAL+ S++ + D GRR
Sbjct: 78 LTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTL 137
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y ++
Sbjct: 138 IGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANIS 197
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
GW+YM+G PL V+ + M++LP SPR+L++ KG E+A L +LR +
Sbjct: 198 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLGKLR--A 246
Query: 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
+ D+ TE E+ S + ++ + S ++F K ++IG LV F QITGQP++L
Sbjct: 247 VLDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNIL 302
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
+YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 303 FYASTVLKSVGFQSNEAASLASTGVGVVKVIST 335
|
|
| UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 86/274 (31%), Positives = 134/274 (48%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
LS E ++ S + GAL+ S+ + D GRR
Sbjct: 74 LSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVL 133
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y ++
Sbjct: 134 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVF 193
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAIS-CLCRLRGQ 269
GW+YM+G PL V+ + M++LP SPR+L++ KG +E A S L RLR
Sbjct: 194 HGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM-----KG-----QEGAASKVLGRLR-- 241
Query: 270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSV 327
++ D+ TE E+ S + ++ + S ++F K ++IG LV F QITGQP++
Sbjct: 242 ALSDT--TE--ELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNI 297
Query: 328 LYYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
L+YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 298 LFYASTVLKSVGFQSNEAASLASTGVGVVKVIST 331
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 78/273 (28%), Positives = 125/273 (45%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXX 148
+ LS G + S L GA +G++ + ++AD +GR+R
Sbjct: 49 FHLSPQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSIS 108
Query: 149 XXXXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
+A ++AP+YI+E +P RG L+SL + + +G+ Y +
Sbjct: 109 WLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFAR 168
Query: 209 LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRG 268
A WR M+ A A ++ +GM LP SPRW+ +G E A+ L +LRG
Sbjct: 169 HDA-WRSMFAAGVIPAALLLLGMIVLPYSPRWIF-----SRGH----EEKALWILRKLRG 218
Query: 269 QSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL 328
G A E++ I L + ++ R +F L I GL +FQQ+TG +VL
Sbjct: 219 H--GPHAEQELEHIRASL----QQQKGDWRTLFSKIIRPTLFIAIGLAVFQQVTGINTVL 272
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
YYA +IL+ GF A+ A ++ +G +I+T
Sbjct: 273 YYAPTILKMTGFQASQTAILATMGIGAVLVIIT 305
|
|
| UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 84/273 (30%), Positives = 132/273 (48%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
L+ E ++ S L GAL+ S+ + D GRR
Sbjct: 74 LTCHEQEMVVSSLLIGALLASLTGGVLIDRYGRRAAIILSSCLLGLGSLILILSLSYEVL 133
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y ++
Sbjct: 134 IVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFANVS 193
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
GW+YM+G P V+ + M++LP SPR+L++ KG E+A L RLR +
Sbjct: 194 HGWKYMFGLVIPFGVLQAIAMYFLPPSPRFLVM-----KGH----EEAASKVLRRLR--A 242
Query: 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVL 328
I D+ TE E+ S + ++ + S ++F K ++IG LV F Q+TGQP++L
Sbjct: 243 ISDT--TE--ELTGIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQVTGQPNIL 298
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
+YA+++L+S GF + A+ S +G+ K+I T
Sbjct: 299 FYASTVLKSVGFQSNEAASLASTGVGVVKVIST 331
|
|
| UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
Identities = 82/273 (30%), Positives = 130/273 (47%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRREXXXXXXXXXXXXXXXXXXPDXXXX 150
LS E ++ S L+GAL S+ + D GRR
Sbjct: 44 LSCKEQEIVVSSLLFGALFASLTGGFLIDRFGRRFAIIIASSLLVMGSLILLPHESYGIL 103
Query: 151 XXXXXXXXXXXXLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
L+ A +YIAE AP RG L+SL E IV+G++ Y +
Sbjct: 104 IVGRIAIGISISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFASVS 163
Query: 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270
GW+YM+G PL + + M++LP SPR+L++ + D E+A L RLR S
Sbjct: 164 HGWKYMFGLVIPLGALQAIAMYFLPPSPRFLVM----KNND-----EAARKILERLRETS 214
Query: 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC-LKA-LIIGAGLVLFQQITGQPSVL 328
A E+ I + L ++ + S ++F K ++A +++G LV F Q TGQP++L
Sbjct: 215 ---DATKELTVIKSSLK---DEHQYSFVDLFRSKNNMRARMLVGLTLVFFVQTTGQPNIL 268
Query: 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMT 361
+YA+++L+S GF + A+ S +G+ K++ T
Sbjct: 269 FYASTVLKSVGFQSNEAASLASTGVGVVKVVST 301
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L6Z8 | XYLL1_ARATH | No assigned EC number | 0.7131 | 0.9396 | 0.9602 | no | no |
| Q6AWX0 | XYLL2_ARATH | No assigned EC number | 0.7577 | 0.9416 | 0.9622 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 514 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 7e-74 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 8e-72 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-63 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-19 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-14 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-10 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-10 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 5e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-09 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 6e-06 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-05 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 4e-04 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 6e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 8e-04 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 0.001 | |
| pfam05631 | 354 | pfam05631, DUF791, Protein of unknown function (DU | 0.001 | |
| PRK03545 | 390 | PRK03545, PRK03545, putative arabinose transporter | 0.004 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 7e-74
Identities = 151/445 (33%), Positives = 242/445 (54%), Gaps = 28/445 (6%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIES----PTLSGISWYDLSSVEIGLITSGSLYGALIG 110
L ALGG L+GYD G I+ L+ I S+V GLI S G LIG
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 111 SILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAMHAA 168
S+ A + D GR++ L++ +L+++GAL+ A F +++VGR + G+G+G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122
Query: 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRYMYGASTPLAVI 226
PMYI+E AP +RG L SL + I G++ IG L GWR G A++
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL 182
Query: 227 MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 286
+ +G+ +LP SPRWL+ ++ E A + L +LRG S D E+ E L
Sbjct: 183 LLIGLLFLPESPRWLV---------LKGKLEEARAVLAKLRGVSDVDQ---EIQEEKDSL 230
Query: 287 SYVGEDKEVSLREVFHGKCLK-ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASD 345
E ++ S E+F GK ++ L++G L +FQQ+TG ++ YY+ +I ++ G S D
Sbjct: 231 ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS---D 287
Query: 346 ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA-- 403
+ V+I++G+ + T +A+ +V+R GRRPLLL G +G+ I +LG L +
Sbjct: 288 SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG 347
Query: 404 -VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPL 462
VA+V +LL++ + L +GP+ W+++SE+FPL +R + +++A N+ AN L+ F F +
Sbjct: 348 IVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Query: 463 KDLLGAGILFYAFGVIAVLSLAFIF 487
+G + F F + VL + F+F
Sbjct: 408 TGAIGGYV-FLVFAGLLVLFILFVF 431
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 8e-72
Identities = 159/477 (33%), Positives = 250/477 (52%), Gaps = 24/477 (5%)
Query: 25 IGSADEEPLIANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLS 84
+ A+ + P+ + L L A+GGL++GYD G A
Sbjct: 1 MSDANLADASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF 60
Query: 85 GIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143
+ SS GL+ S L G IG++ A ++D GR++ L++ ALL+++GA++ L
Sbjct: 61 TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120
Query: 144 AP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY 200
A +++VGR + GIG+G+A PMY++E AP +RG L SL + I G++ Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180
Query: 201 GIGSLLVDLVA--GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 258
G GS V L GWR G A ++ +G+++LP SPRWL+ + E
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV---------GKGRVEE 231
Query: 259 AISCLCRLRGQSIGDSA-PTEVDEILTELSYVGEDKEVSLREVF--HGKCLKALIIGAGL 315
A L RLRG S D E++ I + S + S +F + + L +G L
Sbjct: 232 ARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVL 291
Query: 316 VLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 375
FQQ TG +++YY+ +I ++AG S A VSI++G T +A+ +V+R GRRP
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP 350
Query: 376 LLLGGVSGIVISLFLLGSYYLFLD-----DVPAVAVVALLLYVGCYQLSFGPIGWLMISE 430
LLL G +G+ I LF+LG VA+V +LL++ + + +GP+ W+++SE
Sbjct: 351 LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410
Query: 431 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
+FPL LR +G+S+AV N+ AN +V F F + + +G G +F FG + VL L F++
Sbjct: 411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 5e-63
Identities = 138/460 (30%), Positives = 237/460 (51%), Gaps = 49/460 (10%)
Query: 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSIL 113
L LGGLL+GYD S S+ + ++ + ++ +G + +L G +IG L
Sbjct: 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGR--------FVF-----GIG 160
++ GRR L +AA+L+ + AL +A P+F +G FV GIG
Sbjct: 75 GGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV----GGYGI---GSLLVDLVAGW 213
+GLA +PMYIAE AP +RG+L+S +F I+ G + Y I G GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 214 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 273
RYM+ + A++ M ++++P +PR+L+ + +E A L ++ G +
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLM---------SRGKQEQAEGILRKIMGNT--- 241
Query: 274 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAAS 333
A + EI L + + + + G + ++IG L +FQQ G VLYYA
Sbjct: 242 LATQALQEIKHSLDHGRKTGG---KLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPE 296
Query: 334 ILQSAGFSAASDATRV-SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLG 392
I ++ G A++D + +I++G+ L T LA++ V++ GR+PL + G G+ I +F LG
Sbjct: 297 IFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354
Query: 393 SYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 452
+ + + VA++++L YV + +S+GP+ W+++SE+FP +RG+ L++AV + AN
Sbjct: 355 TAF-YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN 413
Query: 453 ALVTFAF------SPLKDLLGAGILFYAFGVIAVLSLAFI 486
V++ F S L G ++ +G + VL+ F+
Sbjct: 414 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-19
Identities = 94/413 (22%), Positives = 174/413 (42%), Gaps = 67/413 (16%)
Query: 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151
+ ++ L S G L+GS + ++D GR++ L+L+ L+ V ++TA +P++ + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA 211
V R + G+GIG A + E P R + +L + F LG+V + L+ +
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV----LLPLVAYFIP 240
Query: 212 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 271
WR++ A + + + W++P SPRWL+ Q E A+ L R+
Sbjct: 241 DWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS---------QGRIEEALKILQRI----- 286
Query: 272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHG-----------KCLKALIIGAGLVLFQQ 320
A ++ E+ + +K++S + + K L++
Sbjct: 287 ---AKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT---- 339
Query: 321 ITGQPSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP---- 375
+ YY + L + G + D + GL +L + +L+++RLGRR
Sbjct: 340 -----AFSYYGLVLDLGNLGGNIYLDL----FISGLVELPAKLITLLLIDRLGRRYTMAA 390
Query: 376 -LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL 434
LLL GV+ +++ LF+ Y A+AV+ +Q+ + L +E++P
Sbjct: 391 SLLLAGVA-LLLLLFVPVDLYFL---RTALAVLGKFGITSAFQMVY-----LYTAELYPT 441
Query: 435 RLRGRGLSVA-VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486
+R G+ V + G+ SP LG LF + L+L
Sbjct: 442 VVRNLGVGVCSTMARVGS------IISPFLVYLGEKWLFLPLVLFGGLALLAG 488
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 82/365 (22%), Positives = 144/365 (39%), Gaps = 39/365 (10%)
Query: 34 IANGIRPSPENYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
+ N IR P + + L L+ GYD+ A + +P +S W L
Sbjct: 2 VQNNIRKQPLS---RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISA-EW-GLDP 51
Query: 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVG 153
V++G + S L G G++ +AD +GRRR L+ + LL+ V L+ ALA + +++
Sbjct: 52 VQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLIL 111
Query: 154 RFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213
RF+ G+G+G M ++E AP RG + L +G G + L+ V GW
Sbjct: 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-VFGW 170
Query: 214 RYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIG 272
R ++ +++ + + +LP S +L+ K R +I
Sbjct: 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLV-----SKRPETVRR----------IVNAIA 215
Query: 273 DSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAA 332
E L E K + +F GK + ++ L + +Y+
Sbjct: 216 PQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLT 270
Query: 333 SILQSAGFSAASDATRVSILLGLFKLIMTGLAVL---VVERLGRRP----LLLGGVSGIV 385
+ L + + LF +++ + +RLG R LLLG V ++
Sbjct: 271 NWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVL 330
Query: 386 ISLFL 390
+ L
Sbjct: 331 VGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSIL 113
L LG L G D G S A + LS+ + GLI S G +GS+L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLL-------AEDLGLSASQAGLIVSAFSLGYALGSLL 53
Query: 114 AFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIA 173
A ++D GRRR L+L LL+ +G+L+ A A +++VGRF+ G+G G AA IA
Sbjct: 54 AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233
E P RG+ + L LG + G +G LL + GWR+++ L +++ + + +
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLLLF 172
Query: 234 LPASPRWLLLCAM 246
L L L
Sbjct: 173 LLRLLLLLALAFF 185
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 80/367 (21%), Positives = 132/367 (35%), Gaps = 50/367 (13%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+S EIGL+ + G + LA ++D GRRR L++ LL+ +G L+ A
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
+++V R + G+G G AA IA+ P RG+ + L LG G +G LL
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 209 LVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLR 267
L GWR + LA++ + LP P +
Sbjct: 147 LF-GWRAAFLILAILALLAAVLAALLLPRPPP-------------------------ESK 180
Query: 268 GQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSV 327
+ AP + L L+ ++ L L ++
Sbjct: 181 RPKPAEEAPAPLVPAWKLL-------------------LRDPVLWLLLALLLFGFAFFAL 221
Query: 328 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387
L Y + G SA + + L + L L +RLGRR LL + ++++
Sbjct: 222 LTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRL-SDRLGRRRRLLLALLLLILA 280
Query: 388 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV 447
L L ++ ++ LL +G P ++S++ P RG +
Sbjct: 281 ALGL---ALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTA 337
Query: 448 NFGANAL 454
AL
Sbjct: 338 GSLGGAL 344
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
L ++G S + G L G++L +AD +GR+R LI++ L+ + +L TA A DF +
Sbjct: 47 LDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106
Query: 151 VVGRFVFGIGIGLAMHAAPMYIA---ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207
+V R + G+G+G A+ P IA E +RG +SL + G IG L
Sbjct: 107 LVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163
Query: 208 DLVAGWRYMY--GASTPLAVIMGMGMWWLPASPRWL 241
A WR+++ G PL ++ + M WLP S +
Sbjct: 164 G-DAAWRHIFYVGGVGPLLLVPLL-MRWLPESRAFA 197
|
Length = 406 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 80/356 (22%), Positives = 139/356 (39%), Gaps = 72/356 (20%)
Query: 109 IGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--------IIMVVGRFVFGIG 160
+G+I+ + D +GR++ L++ L+ +G L+ L P + I++++ R + G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--------- 211
+G A +Y+AE AP RG S F +G G + +L V L++
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGS----FQQVGAPVGLLLAALTVLLLSYLLGDDALL 165
Query: 212 --GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ 269
GWR + S L +I G++ LR +
Sbjct: 166 EWGWRIPFLVSAVLVLI---GLY----------------------LRRNL---------- 190
Query: 270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLY 329
E + K + E K K ++G GLV+ T Y
Sbjct: 191 -------EETPVFEKAQEK-HKKKRGPIAETLT-KHRKPFLLGLGLVIATTTTFYLITTY 241
Query: 330 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389
+ Q+ G SA + A V +L + I L+ + +R+GRRP+L+ ++ +L
Sbjct: 242 LPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF--TVLAALL 298
Query: 390 LLGSYYLFLDDVPAVAVVALLLYVGC-YQLSFGPIGWLMISEVFPLRLRGRGLSVA 444
+ LD L+L + + GP+G + E+FP +R G S+A
Sbjct: 299 AVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMG-SFLPELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRF 155
G + + G +G+ L + L RRR L+ L++V L++ALAP F ++++ R
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109
Query: 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215
+ G+ G+ A A P RG+ ++L + L V G +G+ L L GWR
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRA 168
Query: 216 MYGASTPLAVIMGMGMWWL 234
+ A LA++ + +W L
Sbjct: 169 TFLAIAVLALLALLLLWKL 187
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Query: 309 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVV 368
L++ L F G +L Y LQ +A++A + L GL ++ L L+
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 369 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMI 428
+RLGRR LLL I + L LG L L A+ +VALLL +F P +
Sbjct: 236 DRLGRRRLLL----LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-PALLTLA 290
Query: 429 SEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
SE+ P RG + AL L D G G +F +A+L+ +
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-09
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFV 156
GL+ +G G LI S L+ + D GR+ L++ ++++ + AL+ + ++++ RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 157 FGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM 216
G G A+ A IA+ P RG + L I LG + G +G +L + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAP 119
Query: 217 Y 217
+
Sbjct: 120 F 120
|
Length = 141 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+ L++V+ + S +L G+++ D GRR ++ + +L+ G L AP +I
Sbjct: 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI 101
Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
M + R V GIG+G ++ Y+ E+ P +R + L ++ GY +G+++
Sbjct: 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL--------LISGYAVGAVVAA 153
Query: 209 LVA---------GWRYMYGASTPLAVIMGMGMWW 233
V GWR ++ S + +W
Sbjct: 154 QVYSLVVPVWGDGWRALFFISILPIIFA---LWL 184
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Query: 47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYG 106
+ A +L FL L L + + S + P LS+ E GL+ S G
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY-LQEVLGLSAAEAGLLLSLFGLG 223
Query: 107 ALIGSILAFNIADILGRRRE-LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAM 165
++G++L ++D LGRRR L++ LL +G L+ ALAP +++V + G G+G A
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225
A +E AP RG L F LG G + LL+D G+ ++ LA+
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALAL 342
Query: 226 IMGMGMWWLP 235
+ + + LP
Sbjct: 343 LAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
Query: 73 CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132
T + +DL+ E LI G I S+ A + LG + ++L L
Sbjct: 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL 86
Query: 133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKE 189
LY VGA + A + +V F+ GIGL AA Y+ ++L +
Sbjct: 87 LYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQ 146
Query: 190 FFIVLGMVGGYGIGSLLVD 208
F LG + G +GS L+
Sbjct: 147 AFNGLGAILGPLLGSSLIL 165
|
Length = 422 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+ L++V+ + S + G +L + D GRR ++++ +L+ VG L AP +
Sbjct: 50 FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW 109
Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR----GQLISLKEFFIVLGMVGGYGIGS 204
+ + R V G+G+ ++ Y+ E+ P +R G LIS G+ IG+
Sbjct: 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLIS------------GFSIGA 157
Query: 205 LLVDLVA-------GWRYMY 217
++ V GWR ++
Sbjct: 158 VVAAQVYSLVVPVWGWRALF 177
|
Length = 496 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT--ALAPD 146
+ S GLI S YG +I I +A + + + L V ++V A
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206
++V R + G+ G A I + AP R +L+ + G+ +G+ +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM--------STSGFQLGTFI 182
Query: 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK-RKGDMQDLRESAISCLCR 265
++GW P+ + G+ S W + A E
Sbjct: 183 FLPISGWLCESWGGWPMIFYVF-GIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINSS 240
Query: 266 LRGQSIGDSAPTEVDEILTELSYV 289
L+GQ + I L
Sbjct: 241 LQGQKGSTRQSLPIKAIPKSLPVW 264
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 30/145 (20%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 82 TLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141
+LS + W +ITS L A+ + + +A G RR +++ + +G+L+
Sbjct: 35 SLSQVQW---------VITSYMLANAISIPLTGW-LAKRFGTRRLFLISTFAFTLGSLLC 84
Query: 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG 201
+AP+ +M++ R + G G G + + + P RG+ +++ +++ G
Sbjct: 85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144
Query: 202 IGSLLVDLVAGWRYMYGASTPLAVI 226
+G +++ WR+++ + P+ +I
Sbjct: 145 LGGWIIENY-HWRWIFLINVPIGII 168
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
L+ +E + + + G G L +AD GR+ ++ + + Y VG ++ LA I++
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL- 209
+ RF+ G+G+ A Y E+ P ++ + + +V G+GIG+++
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYF 161
Query: 210 ------VAGWR 214
GWR
Sbjct: 162 MPSFAEAYGWR 172
|
Length = 426 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 1/120 (0%)
Query: 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD-FI 148
S G + + GAL+G++L + R + A + + LV L P F
Sbjct: 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFP 302
Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208
+ +V F G+G G + P + G++ + G + L D
Sbjct: 303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 85 GISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144
G S D+ + I S L+G ++GS+ AD GR+R + +LY + + +T +
Sbjct: 65 GFSKGDIGILFIAGFGSSMLFGTIVGSL-----ADKQGRKRACLTYCILY-ILSCITKHS 118
Query: 145 PDFIIMVVGRFVFGIGIGLAMHA 167
P++ ++++GRF+ GI L A
Sbjct: 119 PNYKVLMIGRFLGGIATSLLFSA 141
|
This family consists of several eukaryotic proteins of unknown function. Length = 354 |
| >gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA------APMYIAETA 176
RR+ LI +L++ +++ALA +F ++++ R IGI A HA A + I A
Sbjct: 73 RRKLLIGLFVLFIASHVLSALAWNFTVLLISR----IGIAFA-HAIFWSITASLAI-RVA 126
Query: 177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234
P + Q +SL L MV G +G ++ + GWR + A A+I + + L
Sbjct: 127 PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKL 183
|
Length = 390 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 18/167 (10%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
+ G++ G ++G+ +AD LGR++ L++ + A ++ +
Sbjct: 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF 258
Query: 151 VVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210
+ R + G GIG A+ Y AE RG+ +S + + M+GG ++ ++
Sbjct: 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS---WLCMFWMIGGIYAAAMAWAII 315
Query: 211 A--GWRYMYGASTPL-------------AVIMGMGMWWLPASPRWLL 242
GW + G++ V + ++P SPR+ L
Sbjct: 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.75 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.75 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.66 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.6 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.59 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.57 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.53 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.52 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.51 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.49 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.49 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.48 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.46 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.45 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.45 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.44 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.43 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.43 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.42 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.42 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.42 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.41 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.41 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.41 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.4 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.4 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.4 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.39 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.38 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.38 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.37 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.37 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.37 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.36 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.35 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.35 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.35 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.35 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.35 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.34 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.34 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.33 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.32 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.32 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.32 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.31 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.31 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.31 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.29 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.29 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.28 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.27 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.25 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.24 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.24 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.23 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.23 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.21 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.2 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.2 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.18 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.18 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.16 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.15 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.15 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.14 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.11 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.11 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.11 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.1 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.1 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.09 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.09 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.08 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.07 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.05 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.03 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.03 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.03 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.96 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.95 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.91 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.87 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.86 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.86 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.84 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.83 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.81 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.77 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.75 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.74 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.73 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.67 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.66 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.65 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.65 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.62 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.57 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.46 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.44 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.42 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.39 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.31 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.25 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.23 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.18 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.14 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.06 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.97 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.94 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.73 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.7 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.57 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.56 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.52 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.38 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.32 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.13 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.76 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.75 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.73 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.53 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.18 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.06 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.93 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.8 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.66 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.48 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.13 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.22 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.03 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.77 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.83 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.6 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.9 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.96 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.4 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.75 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 86.1 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 85.77 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 85.16 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.57 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 82.8 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=333.49 Aligned_cols=445 Identities=29% Similarity=0.509 Sum_probs=369.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCC-Ccccc--CCch----hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYD--LSSV----EIGLITSGSLYGALIGSILAFNIADIL 121 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~s~~----~~g~~~s~~~~~~~i~~~~~g~l~dr~ 121 (514)
+...+.+..+++.+-+||+.+.+++..+.+.+-..+. .+.++ .+.. ..+.+.+++.+|.++|++..|+++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556677777999999999988866655321100 01133 3332 356788999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHH
Q 010239 122 GRRRELILAALLYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 122 Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 198 (514)
|||..+.++.++..++.++..++ +++.+++++|++.|+..|........++.|..|++.||....+.+.+..+|.++
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 99999999998888888777664 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-hcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHH-hhccccCCccccHHHHHHHHHHHhCCCCCCCCc
Q 010239 199 GYGIGSL-LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL-CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP 276 (514)
Q Consensus 199 g~~~~~~-l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (514)
+..++.. +......|++.+.+..+++++..+...++||+|||+.. ++ +.++|++.++++++.+++++..
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~---------~~~~A~~sl~~y~G~~~~~~~~ 238 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKG---------DEEEARKALKFYRGKEDVEAEI 238 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcC---------CHHHHHHHHHHHhCCCcchhHH
Confidence 9777654 34344479999999999999999999999999999987 55 8899999999999988765555
Q ss_pred hhHHHHHHhhhhccccccchhHHHhhhchh-hHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHH
Q 010239 277 TEVDEILTELSYVGEDKEVSLREVFHGKCL-KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL 355 (514)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (514)
++..+..++.+ ..++++.+++++++++.. +...+...+....++.+.+...+|...++++.|+ +..++.+.....++
T Consensus 239 e~~~~e~~~~~-~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 239 EEMLREIEEEE-LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIGI 316 (485)
T ss_pred HHHHHHHHHhc-cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 44433332221 122356788999998654 4567777888889999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCc-ch---HHHHHHHHHHHHhhcccccccceeeccc
Q 010239 356 FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV-PA---VAVVALLLYVGCYQLSFGPIGWLMISEV 431 (514)
Q Consensus 356 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
..++.++++.++.||+|||++++.+..++.+..+++.......... .| ..+++.+++...+..+.+|+.+.+.+|+
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aEL 396 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAEL 396 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHh
Confidence 9999999999999999999999999999988888877654333222 23 3456677788888999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCchhhhhccc
Q 010239 432 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLRL 505 (514)
Q Consensus 432 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
+|++.|+.+.++....+++..++....+..+.+..|. ..|+.+.+.+++..+..++..||||+|...+..+..
T Consensus 397 f~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 397 FPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999997 688889999999999999999999999877654443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=354.36 Aligned_cols=425 Identities=17% Similarity=0.187 Sum_probs=324.0
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 010239 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL 127 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 127 (514)
+..|.++++++++.+..+++...++.++|.+.++ ++++..+.+++.++++++.+++++++|+++||+|||+++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l 235 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 4556666778888899999999999999999888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 128 ILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+.
T Consensus 236 ii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876665
Q ss_pred ccc------------cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCC-
Q 010239 208 DLV------------AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDS- 274 (514)
Q Consensus 208 ~~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (514)
... .+||+.+++.++++++.++..+++||+|+|+..++ +.+++.+.+++++..+....
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~g---------r~~eA~~iL~~i~~~n~~~~~ 386 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENG---------KHDEAWMILKLIHDTNMRAKG 386 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcC
Confidence 321 27999999998888887778888999999998877 77888888888876553221
Q ss_pred Cch-h--HHHHHHhhhh------ccccc-----------------cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHH
Q 010239 275 APT-E--VDEILTELSY------VGEDK-----------------EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVL 328 (514)
Q Consensus 275 ~~~-~--~~~~~~~~~~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (514)
.+. . ....+..... +.... ..+++++++.+..+..++.+.+ ++....+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~yygl~ 465 (742)
T TIGR01299 387 HPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFGYYGLS 465 (742)
T ss_pred chhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 111 0 0010000000 00000 0135556666655555555444 444555677888
Q ss_pred HhHHHHHHHc------------------------------------------CC-----C---C----------------
Q 010239 329 YYAASILQSA------------------------------------------GF-----S---A---------------- 342 (514)
Q Consensus 329 ~~~~~~~~~~------------------------------------------~~-----~---~---------------- 342 (514)
.|.|.++++. |+ . +
T Consensus 466 ~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (742)
T TIGR01299 466 VWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTF 545 (742)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchh
Confidence 9999875431 00 0 0
Q ss_pred ------------------------------------------------CchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc
Q 010239 343 ------------------------------------------------ASDATRVSILLGLFKLIMTGLAVLVVERLGRR 374 (514)
Q Consensus 343 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 374 (514)
.........+..++.+++.++.|+++||+|||
T Consensus 546 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr 625 (742)
T TIGR01299 546 FKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL 625 (742)
T ss_pred hhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 00123446677789999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHH
Q 010239 375 PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 454 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 454 (514)
+++..+.++.+++++++++. .+....++..+++.++.. +..+...++++|.+|++.|++++|+.+....+|+++
T Consensus 626 ~~l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaii 699 (742)
T TIGR01299 626 RMLAGSMVLSCISCFFLSFG-----NSESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887766542 222333333333333333 334566689999999999999999999999999999
Q ss_pred HHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCc
Q 010239 455 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 497 (514)
Q Consensus 455 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (514)
+|.+.+.+.+. +...+|++.+++.++++++.++ .||++++.
T Consensus 700 gp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~ 740 (742)
T TIGR01299 700 GILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCcccc
Confidence 99999988874 4556777777777776666654 47877653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=335.76 Aligned_cols=439 Identities=29% Similarity=0.538 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCC-CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
..+.++..++.+.++++...+++..|.++++..+. .+.++.+..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44446666888999999999999999888773221 01148899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHH
Q 010239 130 AALLYLVGALVTALA------------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV 197 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 197 (514)
+.+++.++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.+
T Consensus 91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 170 (479)
T PRK10077 91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170 (479)
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence 999999999888763 23577899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhc--------ccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCC
Q 010239 198 GGYGIGSLLV--------DLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ 269 (514)
Q Consensus 198 ~g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
+++.+++.+. +.. +||+.|++.+++.++..+..+++||+|+++..++ +.+++++..++.++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~---------~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 171 VVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---------KQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcC---------CHHHHHHHHHHHcCC
Confidence 9988776553 233 8999999998888877666778999998875544 344444444444332
Q ss_pred CCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHH
Q 010239 270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRV 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (514)
+.. ....++.......+. ...+..+.. .............+....+++...++.|.+.++.|. +.......
T Consensus 241 ~~~---~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~-~~~~~~~~ 311 (479)
T PRK10077 241 TLA---TQALQEIKHSLDHGR----KTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA-STDIALLQ 311 (479)
T ss_pred hhH---HHHHHHHHHHHHHhh----hhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC-CCchHHHH
Confidence 211 111111111100000 000111110 111122222333444455556667788998888887 66667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec
Q 010239 350 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS 429 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (514)
....++..+++.++.++++||+|||+++..+..+.+++.+++...... ...........+++..++...+.|..+.++.
T Consensus 312 ~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 778888999999999999999999999999988888887776543221 1112223333444444444445567778999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH------HhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCchhhhhc
Q 010239 430 EVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK------DLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGL 503 (514)
Q Consensus 430 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
|.+|++.|++++|+.+...++++++++.+.+.+. +..++...|++.+++++++.++.+++.+|+|++..++.++
T Consensus 391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 9999999999999999999999999987776544 5677777888888888888777777788888887766555
Q ss_pred ccccCC
Q 010239 504 RLRRSR 509 (514)
Q Consensus 504 ~~~~~~ 509 (514)
..++++
T Consensus 471 ~~~~~~ 476 (479)
T PRK10077 471 LWEPET 476 (479)
T ss_pred HHhhcc
Confidence 444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=337.79 Aligned_cols=433 Identities=19% Similarity=0.230 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.+.++.++.++.+.++++.+.++.++|.+..+....+ .+.++.+.+++.+.+.++..++++++|+++||+|||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGK--GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3445577778899999999999998888766421111 34567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 010239 130 AALLYLVGALVTALAPD------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG 203 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 203 (514)
+.+++.++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 789999999999999999999999999999999999999999999999999999888
Q ss_pred hhhcc----------------------cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccH-HHHH
Q 010239 204 SLLVD----------------------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLR-ESAI 260 (514)
Q Consensus 204 ~~l~~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~ 260 (514)
..+.. ..++||+.|.+.++++++..+..+++||+|+|+..++ +. +++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~---------~~~~~a~ 242 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA---------KDVEQAA 242 (502)
T ss_pred HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC---------cchHHHH
Confidence 76532 0127999999999888887777888999999998766 22 2344
Q ss_pred HHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhch---hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH
Q 010239 261 SCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC---LKALIIGAGLVLFQQITGQPSVLYYAASILQS 337 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
+.+++.++.+..++. ++.++.++ +.+..+.+++++++++. .++..+.....++.....++....|.|.++++
T Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~ 317 (502)
T TIGR00887 243 SDMSAVLQVKIEAEP-DEVEKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA 317 (502)
T ss_pred HHHHHHhccccccCc-ccccchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence 555555433221111 11111111 01112235777776421 22222322222222222333456678888888
Q ss_pred cCCCCCchhH------------HHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 338 AGFSAASDAT------------RVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 338 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
.|. +...++ .......++.+++.++.++++||+|||++++.+..+.++++.+++..... .... ..
T Consensus 318 ~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-~~~~-~~ 394 (502)
T TIGR00887 318 IGY-SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-LSTH-GF 394 (502)
T ss_pred HcC-CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-cchh-HH
Confidence 887 332211 12334455677788999999999999999988887777776666543211 0111 11
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh----------CcchhhHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL----------GAGILFYAF 475 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~ 475 (514)
.....+...++..+..+..+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.+.. ++...++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHH
Confidence 2222222233344455667788899999999999999999999999999999999998843 344567778
Q ss_pred HHHHHHHHHHhCCCCCCCCCCchhhhh
Q 010239 476 GVIAVLSLAFIFXXXXXXXXSFQRQRG 502 (514)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (514)
+++++++.++. ++.||++++..+|.+
T Consensus 475 ~~~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 475 ALFMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence 87777776654 456899988765543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=332.62 Aligned_cols=432 Identities=35% Similarity=0.629 Sum_probs=321.7
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCC--------chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 010239 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLS--------SVEIGLITSGSLYGALIGSILAFNIAD 119 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~d 119 (514)
++.+...+++.++.+..+++...+++..+.+..+ ++.+ ..+.+++.+++.++..++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 96 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFE-------FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD 96 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHH-------HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3344445666777788999999999999988877 4544 899999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHH
Q 010239 120 ILGRRRELILAALLYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM 196 (514)
Q Consensus 120 r~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 196 (514)
|+|||++++++.++..++.+++.+.. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 97 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 97 RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999996643 456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh---hhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCC
Q 010239 197 VGGYGIG---SLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 273 (514)
Q Consensus 197 ~~g~~~~---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (514)
.+++.++ ....+.. +||+.|++.++..++..+..+++||+|++...++ +.+++++..++.+..+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 177 LVAYGFGSGKVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCc
Confidence 9999999 6665665 9999999977777776667778899987654433 2222233333332222111
Q ss_pred CCchh-HHHHHHhhhhccccccchhHHHhhhc--hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHH
Q 010239 274 SAPTE-VDEILTELSYVGEDKEVSLREVFHGK--CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVS 350 (514)
Q Consensus 274 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (514)
..... ..........+.+..+..+.+.++.. ..++.++...+..+..........++.|++.++.|. +....+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 325 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVS 325 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC-CchHHHHHH
Confidence 11000 00000000001111111233333322 234445555555555555566677888999898888 667888899
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCc-----chHHHHHHHHHHHHhhcccccccc
Q 010239 351 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV-----PAVAVVALLLYVGCYQLSFGPIGW 425 (514)
Q Consensus 351 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 425 (514)
....++.+++.++.+++.||++||+.+..+..+.+++++++.......... .+..+....++.+++..+..+...
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPW 405 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeeh
Confidence 999999999999999999999999999888777777766665321111111 333444445555566666667777
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCc
Q 010239 426 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 497 (514)
Q Consensus 426 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (514)
.+..|.+|++.|++++|+.+...+++++++|.+.+.+.++.++...|++.+++++++.++.+++.+|+++++
T Consensus 406 ~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~ 477 (481)
T TIGR00879 406 VIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRT 477 (481)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCC
Confidence 788999999999999999999999999999999999999999999999999888888888777777766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=324.90 Aligned_cols=447 Identities=39% Similarity=0.613 Sum_probs=362.0
Q ss_pred hhHHHHHHHHHHHHHHhhccc--ccccccccccccCCCCCCCccccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010239 47 VSAAILPFLFPALGGLLYGYD--IGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILG 122 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 122 (514)
............++.+..+++ .+..++....++++....+ ...+. .+.+|+.+.+.++..+++++.|+++|++|
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455556777888888987 6777888777777532222 12222 46699999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHh
Q 010239 123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGI 202 (514)
Q Consensus 123 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 202 (514)
||+.++++.+++.+|.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..+
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999666
Q ss_pred hhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHH
Q 010239 203 GSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI 282 (514)
Q Consensus 203 ~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
+....+...+||..+.+..+++++..+..+++||+|+|+.+++ +.+++++.++++++.+ +++...+..+.
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g---------~~~~a~~~l~~l~g~~-~~~~~~~~~~~ 267 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG---------RLEEAKRSLKRLRGLS-PEDVEVELELL 267 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC---------ChHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence 6666443138999999999999998777888999999999866 8899999999999855 22223333332
Q ss_pred HHhh--hhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHH
Q 010239 283 LTEL--SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIM 360 (514)
Q Consensus 283 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
+... +....+.+..+.++++....++..++..+..+.++++++...+|.+.+++..+..+.. .......++..+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~ 345 (513)
T KOG0254|consen 268 KIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLG 345 (513)
T ss_pred HHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHH
Confidence 2111 1111222224666776557777888999999999999999999999999999983332 66777778888888
Q ss_pred HHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccC-------CcchHHHHHHHHHHHHhhcccccccceeeccccc
Q 010239 361 TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-------DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP 433 (514)
Q Consensus 361 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 433 (514)
.+++..+.||+|||++++.+...+.+++++++....... ...+..+...+++...+..+..|+.+.+..|.+|
T Consensus 346 t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp 425 (513)
T KOG0254|consen 346 TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFP 425 (513)
T ss_pred HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCc
Confidence 999999999999999999999999999998887655432 2346667777788888889999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHH-HhCCCCCCCCCCchhhhhccccc
Q 010239 434 LRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA-FIFXXXXXXXXSFQRQRGLRLRR 507 (514)
Q Consensus 434 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 507 (514)
.+.|+.+.++....+++.+.+....+..+.+..+....|..+++++.+... +.+++.||+|++..++.+...++
T Consensus 426 ~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 426 LRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 999999999999999999988887777777765545567777777777776 78888999999998877654433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=305.42 Aligned_cols=398 Identities=16% Similarity=0.130 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 128 (514)
.++-+++.+.+++..+++.+..++.+.|.+.+| .++|.+|+|++.+.+.+.|+++..+.|.++||.++|+.+.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~ 98 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence 345566778899999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhh--hhh
Q 010239 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG--SLL 206 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l 206 (514)
+++++.++.+++++++++++.+.+..+++|..+|.-.|.+...+..|+|++|||+..++++++.++|..+.|++. +++
T Consensus 99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred cccccchhHHHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 010239 207 VDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTE 285 (514)
Q Consensus 207 ~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
..+. +||..|++.+++++++.+..+ ..+++|+..-..+ .|+ ..++..+
T Consensus 179 ~~~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~----------ie~--------------------~~~d~~e 227 (448)
T COG2271 179 AFHG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP----------IEE--------------------YRGDPLE 227 (448)
T ss_pred Hhcc-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC----------HHH--------------------hhcCchh
Confidence 8877 999999999999998655544 5788876221000 000 0000000
Q ss_pred h-hhccccccch-----hHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 010239 286 L-SYVGEDKEVS-----LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLI 359 (514)
Q Consensus 286 ~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
. +++++.+..+ .+.+++||..|.+.+...+.+.. -+.+..|.|.|+.+....+..++....+.+-+++++
T Consensus 228 ~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv----R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~ 303 (448)
T COG2271 228 IYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV----RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLP 303 (448)
T ss_pred hhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhH
Confidence 0 0001111122 33455666555544444444433 457888999998776666999999999999999999
Q ss_pred HHHHHHHHHhHh--CCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhh
Q 010239 360 MTGLAVLVVERL--GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR 437 (514)
Q Consensus 360 ~~~~~g~l~d~~--g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (514)
|++++|+++||+ |||....+.+.+....+++ .++.. ++.++.....++...+++..+...+.-..+.|..|++..
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~--~~w~~-~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~Aa 380 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLV--LYWLA-PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAA 380 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHH--HHHcC-CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhc
Confidence 999999999997 5665554433332222222 22222 333444444444455555555444555778999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 438 GRGLSVAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 438 ~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
|++.|+...+.++ |.+.+....|.+.|..||...|.++.+.++++.++.....+
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 88999999999999999999998888877777766655444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=296.60 Aligned_cols=374 Identities=22% Similarity=0.226 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010239 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 130 (514)
+..++.+.++.|..+.+.......+|++.+| +|+|..+.|++.|.|.+++.+++++...+.||+.||++++..
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~ 84 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGL 84 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHH
Confidence 4455667788899999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc
Q 010239 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 210 (514)
+.++.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++.+..
T Consensus 85 l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 85 LALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhc
Q 010239 211 AGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 289 (514)
Q Consensus 211 ~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
|||+.|++.++++++..+ .+..+| |+.. +.+
T Consensus 165 -GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------------------------------~~~ 196 (394)
T COG2814 165 -GWRATFLAIAVLALLALLLLWKLLP--PSEI---------------------------------------------SGS 196 (394)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------------------------------CCC
Confidence 999999999999998554 445578 2200 000
Q ss_pred cccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010239 290 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE 369 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 369 (514)
.+.+..+..+.+|++..+..++...+.+..+ +..+.|..|.+.+..|+ +....++....++++.++|+.++|++.|
T Consensus 197 ~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~---F~~ftYi~P~L~~v~g~-s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d 272 (394)
T COG2814 197 LPGPLRTLLRLLRRPGVLLGLLATFLFMTGH---FALYTYIRPFLESVAGF-SVSAVSLVLLAFGIAGFIGNLLGGRLAD 272 (394)
T ss_pred CCcchhHHHHHhcCchHHHHHHHHHHHHcch---hhhHHhHHHHHHHccCC-CHhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1112223456666666555444433333322 33444445555555666 8899999999999999999999999999
Q ss_pred HhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHH
Q 010239 370 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNF 449 (514)
Q Consensus 370 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 449 (514)
| +.|+.+.....+.++..+.+.+. .++.+..+....+.+........ .......+..| +.+..+.+++....+
T Consensus 273 r-~~~~~l~~~~~l~a~~~l~l~~~----~~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~p-~~~~~a~sl~~aa~n 345 (394)
T COG2814 273 R-GPRRALIAALLLLALALLALTFT----GASPALALALLFLWGFAFSPALQ-GLQTRLARLAP-DAADLAGSLNVAAFN 345 (394)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhh-HHHHHhcccCC-CchHHHHHHHHHHHH
Confidence 9 88888888777777777665542 33444444444443333322222 22244455444 779999999999999
Q ss_pred HHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCC
Q 010239 450 GANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 450 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
+|..+|..+.|.+.|+.|+....+..+.+.+++.++.+...
T Consensus 346 lgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 346 LGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999899988888888777765533
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=312.44 Aligned_cols=395 Identities=18% Similarity=0.234 Sum_probs=271.0
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchh----hHH--HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVE----IGL--ITSGSLYGALIGSILAFNIADILGRRRE 126 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~g~--~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 126 (514)
.+....++.+++++|...++...|.+.++ |+.+.+. .+. +.++.++++.++++++|+++||+|||++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 89 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI 89 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34556788899999999999999999887 5433211 222 2578889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHH
Q 010239 127 LILAALLYLVGALVTALAPDFII--------MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 198 (514)
+.+++++++++++++++++|++. ++++|+++|++.|...+...++++|++|+++||++.++...+..+|..+
T Consensus 90 l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~l 169 (490)
T PRK10642 90 LAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVL 169 (490)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 8999999999999999999999999999999999999999988888888
Q ss_pred HHHhhhhhcc--------cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCC
Q 010239 199 GYGIGSLLVD--------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270 (514)
Q Consensus 199 g~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (514)
++.+...+.. .. |||+.|++.++++++..++...+||+|++...+++.++ .. . +
T Consensus 170 g~~~~~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~---------~~-------~-~ 231 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQ---------GD-------R-E 231 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhh---------hc-------c-c
Confidence 8866654432 34 99999999887766655556678999886532220000 00 0 0
Q ss_pred CCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHH
Q 010239 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRV 349 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (514)
. ..++++.++++++++ ..+......... +.....++....|.|.++++ .+. +.......
T Consensus 232 --------------~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~ 291 (490)
T PRK10642 232 --------------G---LQDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHY-SEDHGVLI 291 (490)
T ss_pred --------------c---ccccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 0 001112345556553 222222222222 22223344566788888754 566 66667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec
Q 010239 350 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS 429 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (514)
.....++.+++.++.|+++||+|||+.+..+.++..+....+.... ...+....+...++.+.+..... +....+..
T Consensus 292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~ 368 (490)
T PRK10642 292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NSNVIGLIFAGLLMLAVILNCFT-GVMASTLP 368 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7788888999999999999999999988776654333222211111 12222222222222222222222 23346677
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 010239 430 EVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXXXXXXXS 496 (514)
Q Consensus 430 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (514)
|.+|++.|++++|+.+.+..+++.++|.+.+.+.+..+ +...++...+.++++.+..++ .||++++
T Consensus 369 ~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~ 435 (490)
T PRK10642 369 AMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANR 435 (490)
T ss_pred HHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCC
Confidence 89999999999998777777888999999999988655 444555545555555444443 4665443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=313.31 Aligned_cols=390 Identities=21% Similarity=0.271 Sum_probs=287.7
Q ss_pred cccccccCCCCCCCccccCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010239 73 CATISIESPTLSGISWYDLS---SVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII 149 (514)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (514)
+..+.+.+| ++++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.
T Consensus 110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (505)
T TIGR00898 110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV 182 (505)
T ss_pred cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 567788888 8998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHH
Q 010239 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM 229 (514)
Q Consensus 150 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 229 (514)
+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~ 258 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFL 258 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987663 599999999999888777
Q ss_pred HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 230 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
..+++||+|+|+..++ +.+++.+.+++..+.+......+.. +...+.+...++++.+.+++++++..+..
T Consensus 259 ~~~~~~esp~~l~~~~---------~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (505)
T TIGR00898 259 LSWFVPESPRWLISQG---------RIEEALKILQRIAKINGKKLPAEVL-SLSLEKDLSSSKKQYSFLDLFRTPNLRKT 328 (505)
T ss_pred HHHhcCCChHHHHHCC---------CHHHHHHHHHHHHHHcCCCCCHHHH-hhhhhhhhhhccCCCcHHHHhCChHHHHH
Confidence 7788999999987766 4555555555544333221111111 11101111111223467888888877766
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
.+...+.++.....++. .+.+....+. +........++..+++.++.+++.||+|||+.+..+.++.+++++
T Consensus 329 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l 400 (505)
T TIGR00898 329 TLCLMMLWFTTAFSYYG----LVLDLGNLGG----NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALL 400 (505)
T ss_pred HHHHHHHHHHHHHHHHH----HhccccccCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55554444432221111 2222333333 234555566788889999999999999999999988888777766
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcc
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAG 469 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 469 (514)
++... .....+......++...+... ..+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ + +..++.
T Consensus 401 ~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~ 474 (505)
T TIGR00898 401 LLLFV---PVDLYFLRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLF 474 (505)
T ss_pred HHHHc---CCCchHHHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHh
Confidence 65432 112223333333333333332 23455688899999999999999999999999999999988 4 445666
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCCCCCch
Q 010239 470 ILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 498 (514)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (514)
..+.+++++.+++.++.++ .+|+++++.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~-lpet~~~~l 502 (505)
T TIGR00898 475 LPLVLFGGLALLAGILTLF-LPETKGVPL 502 (505)
T ss_pred hHHHHHHHHHHHHHHHHHc-CcCCCCCCC
Confidence 6777777777777666554 567776543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=301.19 Aligned_cols=395 Identities=17% Similarity=0.158 Sum_probs=278.2
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.|..+.+++++++++++|...++...|.+++| +|++..+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 78 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG 78 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence 34455667778888999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++++++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred -----ccchhHHHHhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 010239 210 -----VAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283 (514)
Q Consensus 210 -----~~~wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
..+||+.|++.++++++. .+..+++||+|+.. + +- ..++.+...++.+....+.+.++.
T Consensus 159 ~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~-------~--~l-~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (412)
T TIGR02332 159 DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA-------K--WL-DEEDKKALKEMIDNDQLTLEQPEG----- 223 (412)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC-------C--CC-CHHHHHHHHHHHHhcccccccccc-----
Confidence 238999999998888774 44455678887520 0 00 001111111111111100000000
Q ss_pred HhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc--CCCCCchhHHHHHHHHHHHHHHH
Q 010239 284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA--GFSAASDATRVSILLGLFKLIMT 361 (514)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
..+......+..+++++ ++.. +...+.+++....+..+..|.|.++++. +. +..+++.......++.+++.
T Consensus 224 -~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~-s~~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 224 -AFAHAAMPQRSMLREIF-TPAI----MLYTLAYFCLTNTLSAINIWTPQILQSFNQGS-SNIMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred -ccccccccHHHHHHHhc-ChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cHHHhHHHhhHHHHHHHHHH
Confidence 00000000011233333 2222 2223333334444556778999999875 34 56788889999999999999
Q ss_pred HHHHHHHhHhCCchhh-hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhH
Q 010239 362 GLAVLVVERLGRRPLL-LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRG 440 (514)
Q Consensus 362 ~~~g~l~d~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 440 (514)
++.|+++||+++|+.. .....+..++. ++... ............+...+. ....+..+....|.+|++.|+++
T Consensus 297 l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a 370 (412)
T TIGR02332 297 IWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA----TDHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIA 370 (412)
T ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----cCCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHH
Confidence 9999999999977753 33333333322 22211 112222221122211111 11123334555788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHH
Q 010239 441 LSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIA 479 (514)
Q Consensus 441 ~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 479 (514)
+|+.+...++|++++|.+.|.+.|..| |...+.+.+++.
T Consensus 371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 999999999999999999999999875 887777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=308.11 Aligned_cols=395 Identities=14% Similarity=0.113 Sum_probs=279.7
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 132 (514)
.+....++.+...++...++..+|.+.++ +|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~ 96 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI 96 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence 33445566677777777888899999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccc
Q 010239 133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 212 (514)
+.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++++++.+.+.. +
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g 175 (434)
T PRK11663 97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-G 175 (434)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998877 9
Q ss_pred hhHHHHhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccc
Q 010239 213 WRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 291 (514)
Q Consensus 213 wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (514)
||+.|++.++++++. .+..++++|+|++..... ..++ +.+ .++ . ..+ .+
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~---~~~~--~~~-~~~-----------------~---~~~----~~ 225 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPS---VGEW--RHD-ALE-----------------L---AQQ----QE 225 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCC---cccc--ccc-ccc-----------------c---chh----cc
Confidence 999999988877664 344455788765321000 0000 000 000 0 000 00
Q ss_pred cccchhHH-----HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 010239 292 DKEVSLRE-----VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAV 365 (514)
Q Consensus 292 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 365 (514)
+++.+.++ .++++..+...+...+. ......+..|.|.+++ +.|. +..+++.......++.++++++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~~g~~~~g 300 (434)
T PRK11663 226 GAGLSRKEILTKYVLLNPYIWLLSFSYVLV----YVVRAAINDWGNLYMSETLGV-DLVTANSAVSMFELGGFIGALVAG 300 (434)
T ss_pred ccCCChhhhHHHHHhcChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00111122 33444434333322222 2223355667888874 4566 778889999999999999999999
Q ss_pred HHHhHh--CCchhh-hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHH
Q 010239 366 LVVERL--GRRPLL-LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 442 (514)
Q Consensus 366 ~l~d~~--g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 442 (514)
+++||+ ++|+.. ........+....+... ...+... .....+..+.+..+..........|.+|++.+++++|
T Consensus 301 ~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 376 (434)
T PRK11663 301 WGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PFASYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATG 376 (434)
T ss_pred hhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---ccccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHH
Confidence 999998 333332 22222222222111111 1112222 2122222222222111122345689999999999999
Q ss_pred HHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 443 VAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 443 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
+.++..++|++++|.+.|.+.|+.|+...|...+++.+++.+..+...++++
T Consensus 377 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 377 FVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999988888887776655444333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=300.39 Aligned_cols=368 Identities=18% Similarity=0.182 Sum_probs=275.9
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
..+.++.+....+.....+.+|.+.++ +|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 12 VTLALAAFIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred HHHHHHHHHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 444444455444545566778999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|..++|++++.+.+.. +||
T Consensus 85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~ 163 (390)
T PRK03545 85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWR 163 (390)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877 999
Q ss_pred HHHHhhHHHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
+.|++.++++++..+.. .++||.|+. ++++
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 194 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPSE-------------------------------------------------HSGS 194 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC-------------------------------------------------Ccch
Confidence 99999998887754433 345654320 0000
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
..+.++.++++..+.......+..... .....+.+.++++ .|. +...++.......++.++++++.+++.||++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~ 269 (390)
T PRK03545 195 LKSLPLLFRRPALVSLYLLTVVVVTAH----FTAYSYIEPFVQQVAGL-SENFATLLLLLFGGAGIIGSVLFSRLGNRHP 269 (390)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 112345666665554333322222221 1223344545454 566 7788899999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHH
Q 010239 373 RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 452 (514)
Q Consensus 373 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 452 (514)
+|+.. .+..+..++...+... .++.+.......+.+.+ .....+.....+.+..| +.+++++|+.+...++|.
T Consensus 270 ~~~~~-~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (390)
T PRK03545 270 SGFLL-IAIALLLVCLLLLLPA----ANSEWHLSVLSIFWGIA-IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI 342 (390)
T ss_pred hhHHH-HHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHH-HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence 87654 3333333333332211 22333333333333332 23333344466677777 678999999999999999
Q ss_pred HHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 453 ALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 453 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.+||.+.|.+.|+.|++..++..+++.+++.++.+...+
T Consensus 343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999988888887777665443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=304.36 Aligned_cols=381 Identities=23% Similarity=0.259 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 128 (514)
+.|..+.+..+..+.++++....++..|.+.++ +|.++.+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 84 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI 84 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 556666777788889999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 129 LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
.+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 85 VSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cccchhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhh
Q 010239 209 LVAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS 287 (514)
Q Consensus 209 ~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
.. +||+.|++.+++.++..+ ...++||+|++..+++ +.+
T Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~------------------------------ 204 (406)
T PRK11551 165 DA-AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG---------AGK------------------------------ 204 (406)
T ss_pred cc-CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC---------cch------------------------------
Confidence 76 999999998877666443 4455788775321110 000
Q ss_pred hccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010239 288 YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLV 367 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 367 (514)
+++...+..++.+..+..... ....+......+....|.|.++++.|. +..+.+.......++.+++.++.|++
T Consensus 205 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l 278 (406)
T PRK11551 205 ----QRAPVLRALFGEGRATATLLL-WISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGAL 278 (406)
T ss_pred ----hhhhhHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111111111111 111111122233555678888888887 77888999999999999999999999
Q ss_pred HhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHH
Q 010239 368 VERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV 447 (514)
Q Consensus 368 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 447 (514)
.||+++|+.+..+.....++.+++.. .++.+...... ++.+....+..+...++..|.+|++.|+++.|+.+..
T Consensus 279 ~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 352 (406)
T PRK11551 279 MDRLRPRRVVLLIYAGILASLAALAA-----APSFAGMLLAG-FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV 352 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence 99999999887766555555444332 12233322222 2223333333455567889999999999999999999
Q ss_pred HHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCC
Q 010239 448 NFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 448 ~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 488 (514)
..+++.++|.+.|.+.++.+ +...++....+.+++.++.+.
T Consensus 353 ~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 353 GRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998755 333444554455555444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=301.53 Aligned_cols=384 Identities=16% Similarity=0.194 Sum_probs=280.6
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010239 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (514)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 133 (514)
+....++.+.++++.....+.+|.++++ +|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4566677788899999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccch
Q 010239 134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 213 (514)
.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +|
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w 171 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GW 171 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877 99
Q ss_pred hHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 214 RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 214 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
|+.|++.++..++........||++++...+.. ..++. .+. ..+..
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~---------------------~~~~~--~~~-----------~~~~~ 217 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS---------------------GKGKH--SQS-----------AWSVF 217 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh---------------------ccccc--ccc-----------chhhh
Confidence 999998654443333333334555442211000 00000 000 00011
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
+..++++++++.++.........+. .+.....+..+.|.++++.+. +....+.......++.++++++.+++.||++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~ 295 (426)
T PRK12307 218 SLSMKGLFNRAQFPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGL 295 (426)
T ss_pred hHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2245667777665544433322222 222222345677888888877 77788888889999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+.+..+..+..+..+.+... .......+....+..+....+..+....++.|.+|++.|++++|+.+....+++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 296 KKTFSIGLLMSFLFIFPLFRI----PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT 371 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH
Confidence 998887776665544433221 1122222222111111222222334446778999999999999999999999999
Q ss_pred HHHHhchHhHHhhCcchh-hHHHHHHHHHHHHH
Q 010239 454 LVTFAFSPLKDLLGAGIL-FYAFGVIAVLSLAF 485 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~-~~~~~~~~~~~~~~ 485 (514)
++|.+.|.+.+..|+... ++..++.+..+...
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 404 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTFIVAFWTATILLI 404 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 999999999998886543 33333333333333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=312.23 Aligned_cols=398 Identities=15% Similarity=0.085 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.+.++.+.+++++....++..+++..|.+.+| +|++..+.|++.+++.+++.+++++.|+++||+|||+++.+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 45566777788888888999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhh
Q 010239 130 AALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS 204 (514)
Q Consensus 130 ~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 204 (514)
+.++++++.+..++ +++++.+++.|+++|++.+...+...++++||+|+++||++++++..+.++|.++++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 88888887776665 5899999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcccc--cchhHHHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHH
Q 010239 205 LLVDLV--AGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE 281 (514)
Q Consensus 205 ~l~~~~--~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
++.+.. .+||..|.+.++++++..+..+ +.+++|+..... +.++ . ..... . . ++
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~----------~~~~---~---~~~~~-~----~--~~ 236 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG----------KAEE---I---FGEPI-S----E--ED 236 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC----------Chhh---c---ccCcc-c----h--hh
Confidence 665532 2699999998888777544444 456665421000 0000 0 00000 0 0 00
Q ss_pred HHHhhhhccccccch-hHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHH
Q 010239 282 ILTELSYVGEDKEVS-LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLI 359 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
...+..+...... .+..++++..+...+... +..........|.|.++++ .|. +..+++.......++.++
T Consensus 237 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~p~yl~~~~g~-s~~~a~~~~~~~~~~~~i 309 (467)
T PRK09556 237 --KETESTDMTKWQIFVEYVLKNPVIWLLCFANI----FLYIVRIGIDNWSPVYAFQELGF-SKEDAINTFTLFEIGALV 309 (467)
T ss_pred --hccccccCcHHHHHHHHHHcChHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHH
Confidence 0000000000001 122455555444333222 2222234566788887755 666 778888999999999999
Q ss_pred HHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhh
Q 010239 360 MTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGR 439 (514)
Q Consensus 360 ~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 439 (514)
+.++.|+++||++||+.+.....+..++..++... ..++.+......++++ ....+..........|.+|++.+|+
T Consensus 310 g~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~p~~~~g~ 385 (467)
T PRK09556 310 GSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---HATSEYMYLASLFALG-FLVFGPQLLIGVAAVGFVPKKAIGV 385 (467)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHH-HHHhhHHHHHHHHHHhhcchhhHHH
Confidence 99999999999999987665444333332222111 1222222222222222 2222221122245679999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhchHhHH------------hhCcchhhHHHHHHHHHHHHHhCC
Q 010239 440 GLSVAVLVNFG-ANALVTFAFSPLKD------------LLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 440 ~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+.|+.+...++ |++++|.+.|.+.| ..||+..|++.+++.+++.++.+.
T Consensus 386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 77999999999999 577888898888777777666554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=289.29 Aligned_cols=361 Identities=15% Similarity=0.097 Sum_probs=271.1
Q ss_pred cccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 010239 69 GSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148 (514)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 148 (514)
...++.+|.+++| +|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++
T Consensus 26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA 98 (393)
T ss_pred hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence 6678999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHH
Q 010239 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG 228 (514)
Q Consensus 149 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 228 (514)
.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++..+||+.+.+.++..++..
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 78999999999999999999999999988765589999887766655443
Q ss_pred HHhhccc-CchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhh
Q 010239 229 MGMWWLP-ASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK 307 (514)
Q Consensus 229 ~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (514)
+..+... +.|+ + + +++ +...++.++++..+
T Consensus 178 ~~~~~~~~~~~~-----~-----------~--------------------------------~~~-~~~~~~~l~~~~~~ 208 (393)
T PRK09705 178 FAWWWQSAREVA-----S-----------S--------------------------------HKT-TTTPVRVVFTPRAW 208 (393)
T ss_pred HHHHHHhcCCCc-----c-----------c--------------------------------cCC-CcCCcccccCHhHH
Confidence 3333221 1111 0 0 000 00112233333333
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 387 (514)
...+.. +.....+.....|.|.++++.+. +..+++....+..++.++++++.+++.||++||+....+..+..++
T Consensus 209 ~l~~~~----~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 209 TLGVYF----GLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 322222 12222344566788888888877 7888999999999999999999999999999999888877666666
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeecccc-chhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh
Q 010239 388 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF-PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 466 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 466 (514)
..++... ...... . ...+.+.+.+ ...+.......+.. |++.+++.+|+.+...++++.++|.+.|++.|..
T Consensus 284 ~~~~~~~----~~~~~~-~-~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 284 FCGFIWL----PLQLPV-L-WAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHHHc----cchHHH-H-HHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544321 111111 1 1222222222 22333334445555 4678999999999999999999999999999998
Q ss_pred C-cchhhHHHHHHHHHHHHHhCCCCCCCCCCch
Q 010239 467 G-AGILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 498 (514)
Q Consensus 467 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (514)
| +...|.+.++++++..++.+.+.+|++.+..
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 357 GNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 7 6667777777777777776777777665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=293.02 Aligned_cols=376 Identities=17% Similarity=0.209 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCCCccc---cCCchhhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010239 52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWY---DLSSVEIGL---ITSGSLYGALIGSILAFNIADILGRRR 125 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~---~~s~~~~~~~i~~~~~g~l~dr~Grr~ 125 (514)
..+....++.+++.+|...++...|.+.++ + +.+..+.+. +.+..+++..++++++|+++||+|||+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~ 94 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHI-------FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKK 94 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 344556678889999999999999999887 5 344554444 444455555699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHH
Q 010239 126 ELILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV 197 (514)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 197 (514)
++..++++++++++++++++++. .+++.|+++|++.|...+...++++|++|+++|+++.++.+.+...|.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~ 174 (432)
T PRK10406 95 SMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL 174 (432)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 6999999999999999999999999999999999999999988888888
Q ss_pred HHHHhhhhhcc--------cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCC
Q 010239 198 GGYGIGSLLVD--------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ 269 (514)
Q Consensus 198 ~g~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
+++.+...+.. .. |||++|++.++++++.......+||+|++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-------------------------- 227 (432)
T PRK10406 175 LALLVVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETR-------------------------- 227 (432)
T ss_pred HHHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--------------------------
Confidence 88877655432 34 99999999888877765555557776542100
Q ss_pred CCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHH
Q 010239 270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATR 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 348 (514)
+.++..+++++++++..+...+.. .......++.+..|.|.++++ .+. +..+.+.
T Consensus 228 --------------------~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~lp~~l~~~~g~-s~~~~~~ 283 (432)
T PRK10406 228 --------------------ALKEAGSLKGLWRNRRAFIMVLGF---TAAGSLCFYTFTTYMQKYLVNTAGM-HANVASG 283 (432)
T ss_pred --------------------hhcccccHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHH
Confidence 000112456667655433322222 111122234566678887754 566 6677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceee
Q 010239 349 VSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMI 428 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (514)
......+...++.++.|+++||++||+.+.....+..+....+.... ......+..+....+...... ...+..+.+.
T Consensus 284 ~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 361 (432)
T PRK10406 284 IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-QNVSSPYAAFGLVMCALLIVS-FYTSISGILK 361 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 88888888888899999999999999887665554333322221111 111122222211111111111 1223345678
Q ss_pred ccccchhhhhhHHHHHHHHHHH-HHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCC
Q 010239 429 SEVFPLRLRGRGLSVAVLVNFG-ANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 429 ~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+|.+|++.|++++|+.+...++ .+...|.+.+. .+..| +...++..+++.+++.+..++
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988665 34457777774 45556 444555555666665555544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=289.22 Aligned_cols=387 Identities=19% Similarity=0.214 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.|..+....++.+.++++....++..|.++++ +|++..+.+++.+++.++..+++++.|+++||+|||++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34555677788899999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc-chhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhh
Q 010239 210 VA-GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 288 (514)
Q Consensus 210 ~~-~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
.+ +||+.|++.+++.++..+....+||++++..+++. .++..+..++..+... ..+. .
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~---~--- 221 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG---------KALVRTMVDILYGGEH------RIAN---I--- 221 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh---------hhhhhhHHHHHhccch------hhhh---h---
Confidence 51 49999998777666665556667887654322110 0000011111100000 0000 0
Q ss_pred ccccccchhHHHhhhchhhHHHH-HHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010239 289 VGEDKEVSLREVFHGKCLKALII-GAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVL 366 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 366 (514)
.++.....++.. +..+.... ......+.... ......+.|.++. +.+. +..+.+.......++.+++.++.++
T Consensus 222 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g~ 296 (405)
T TIGR00891 222 -VMTLAAAMVQSA--GKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGL-SPHTVANIVVFSNIGAIVGGCVFGF 296 (405)
T ss_pred -hhhhhHHhhhhh--hhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011111 11111111 11111111111 1233345565554 5666 7788899999999999999999999
Q ss_pred HHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHH
Q 010239 367 VVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL 446 (514)
Q Consensus 367 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 446 (514)
+.||++||+.+..+..+..+....+.. . ..+.+.......+.. ....+..+....++.|.+|++.|++++|+.+.
T Consensus 297 l~dr~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (405)
T TIGR00891 297 LGDWLGRRKAYVCSLLAGQLLIIPVFA--I--GANVAVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQ 371 (405)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHHH--h--CCchHHHHHHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence 999999999887776554332222211 1 222332222222222 22233334555788999999999999999999
Q ss_pred HHHHHHHHHHHhchHhHHhhC-cchhhHH
Q 010239 447 VNFGANALVTFAFSPLKDLLG-AGILFYA 474 (514)
Q Consensus 447 ~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 474 (514)
..++++.++|.+.|.+.|+.| |...+..
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999999988 6654443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=284.08 Aligned_cols=349 Identities=16% Similarity=0.094 Sum_probs=247.7
Q ss_pred ccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010239 70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFII 149 (514)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (514)
.+++.+|.+++| +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..++.....+.+.....+|++.
T Consensus 9 ~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 457889999998 9999999999999999999999999999999999999877665555554433333479999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH-H
Q 010239 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM-G 228 (514)
Q Consensus 150 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~-~ 228 (514)
+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++++.+.. +||+.|++.++++++. .
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHH
Confidence 99999999999996 5566667799999999999999999999999999999999999877 9999999988887774 4
Q ss_pred HHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhH
Q 010239 229 MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA 308 (514)
Q Consensus 229 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (514)
+..+++||+|++. + + . . +..+ ...+++++++++..+.
T Consensus 160 ~~~~~lp~~p~~~---~---~-----~-------------------~--~~~~-----------~~~~~~~ll~~~~~~~ 196 (368)
T TIGR00903 160 LVLAALPALPFQA---A---E-----G-------------------F--GFKD-----------AVKEFGALAGRKDLWI 196 (368)
T ss_pred HHHHHcCCCCCCC---C---C-----C-------------------c--chHH-----------HHHHHHHHHcChhHHH
Confidence 4455689887521 0 0 0 0 0000 0013567777776655
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc---hhhhh-hHHHH
Q 010239 309 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR---PLLLG-GVSGI 384 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---~~~~~-~~~~~ 384 (514)
..+..++ ....++.+..|.|.++++.++ +.. .+.......+.+.++ .++++||..|| +.... ...+.
T Consensus 197 ~~~~~~~----~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~ 267 (368)
T TIGR00903 197 IGAILGF----GVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLI 267 (368)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 4443333 333344667899999988776 543 555555555555544 46778877543 33222 23333
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 385 VISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
++....+.. ..+.+..+....+ .+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 268 a~~~~~~~~-----~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~ 341 (368)
T TIGR00903 268 AAFFLALAF-----ELNRLALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS 341 (368)
T ss_pred HHHHHHHHH-----ccccHHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 333222221 1223322222222 2233333334456789999999999999999999999999999999988873
Q ss_pred hhCcchhhHHHHHHHHHHHHHhC
Q 010239 465 LLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 465 ~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
|....|.++++..+++.+..+
T Consensus 342 --~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 --SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred --CHHHHHHHHHHHHHHHHHHHH
Confidence 666778888887777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=259.12 Aligned_cols=418 Identities=18% Similarity=0.240 Sum_probs=313.9
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010239 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 130 (514)
|...+...++.+.+....-..+-+.|.+... .+.+..+..++....+.|..+++..+|.++|++|||+.+.+.
T Consensus 77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~-------w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 77 WYLFFVAGMGWMADAMEMMLLSLILPALDEV-------WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 3344555566666655555566667777776 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc
Q 010239 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 210 (514)
.+...+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...+......++
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 899999999999999999888887 899999999999999999998
Q ss_pred cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCc--------hhHHH-
Q 010239 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAP--------TEVDE- 281 (514)
Q Consensus 211 ~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~- 281 (514)
||||.......+..+.+...+++||+||++..++ +.+++.+.++++...+...-.. .+.++
T Consensus 228 -gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G---------~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 228 -GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKG---------DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred -hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcC---------ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 9999999999888888888889999999998888 6777777777664433221110 01111
Q ss_pred ---HHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc--------------------
Q 010239 282 ---ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-------------------- 338 (514)
Q Consensus 282 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 338 (514)
..+......++.+....+++..+.++..++.+...+...+..++.+.. ...+++..
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~c 376 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLL-TTELFQSGDACPLYNRFLPTELETRANC 376 (528)
T ss_pred hhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhccCccccchhcchhHHHhhhcC
Confidence 111111223344556677777666666666666555554443333222 22222211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhc
Q 010239 339 GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQL 418 (514)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (514)
.. +...-..-..+..+...+|.++.+++.||+|||+.+...+++++++.+++... .......+..+..-.+...
T Consensus 377 ~~-s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg 450 (528)
T KOG0253|consen 377 PL-SVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISG 450 (528)
T ss_pred Cc-cchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhc
Confidence 11 12223344566788899999999999999999999999888888777665432 2233334444445555555
Q ss_pred ccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCc
Q 010239 419 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 497 (514)
Q Consensus 419 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (514)
++. +.+.|..|.+|+..|+++.|.+.....+|+++.|.+. +........+..+.+++++++.+...++.-|+|+|.
T Consensus 451 ~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 451 AFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 554 5579999999999999999999999999999999988 443345556777788888888888888788888875
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=284.73 Aligned_cols=383 Identities=17% Similarity=0.160 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHhhccccccccccccc-ccCCCCCCCccc-cCCchhhHHHH-----HHHHHHHHHHHHHHHHHHhhhhhh
Q 010239 52 LPFLFPALGGLLYGYDIGSTSCATIS-IESPTLSGISWY-DLSSVEIGLIT-----SGSLYGALIGSILAFNIADILGRR 124 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~Grr 124 (514)
..+....++.+.+++|...++.+.|. +.++. + +.++. .+++. ++.+++..+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREF------FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 34566667889999999988877764 33331 1 45554 45543 355677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHH
Q 010239 125 RELILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM 196 (514)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 196 (514)
++++++.++++++++++++++++. .++++|+++|++.|...+....++.|++|+++|++..+..+.+..+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcc--------cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhC
Q 010239 197 VGGYGIGSLLVD--------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRG 268 (514)
Q Consensus 197 ~~g~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (514)
+++..+...+.. .. +||++|++.+++.++........||+|++..++++.++
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------- 234 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------- 234 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-------------------
Confidence 999877766542 33 99999999888766655444557888765322210000
Q ss_pred CCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhH
Q 010239 269 QSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDAT 347 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 347 (514)
.+++....+.+++++..+...+. . .+......+....|.|.+++ ..+. +.....
T Consensus 235 ---------------------~~~~~~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~y~~~~~g~-s~~~~~ 289 (438)
T PRK09952 235 ---------------------AKKRIPVIEALLRHPGAFLKIIA--L-RLCELLTMYIVTAFALNYSTQNLGL-PRELFL 289 (438)
T ss_pred ---------------------ccccCCHHHHHHHchHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHH
Confidence 00000111223343332222211 1 11222223345556676664 4555 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhccccccccee
Q 010239 348 RVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLM 427 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (514)
......++..+++.++.|+++||++||+.+..+.++..++...+..... ..+..+..+....+...+.+ ...+..+++
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 367 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQSIFWIVFFSIMLANIAHD-MVVCVQQPM 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4555667777888999999999999999887776655444332222111 11122222222222222222 223445678
Q ss_pred eccccchhhhhhHHHHHHHHH-HHHHHHHHHhchHhHHhhC--cchhhHHHHHHHHHHHHHhCC
Q 010239 428 ISEVFPLRLRGRGLSVAVLVN-FGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 428 ~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~ 488 (514)
..|.+|++.|+++.++.+... .+++.++|.+.+.+.+..+ |...+...+++.+++.+..+.
T Consensus 368 ~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 368 FTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999977664 4899999999999988553 666677777777776666554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=287.74 Aligned_cols=356 Identities=13% Similarity=0.027 Sum_probs=267.8
Q ss_pred ccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 010239 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (514)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
....++..|.+.++ +|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|+
T Consensus 19 ~~~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~ 91 (377)
T TIGR00890 19 VYTWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL 91 (377)
T ss_pred HhhhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence 44567889999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH
Q 010239 148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM 227 (514)
Q Consensus 148 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 227 (514)
+.++++|++.|++.+...+.....+.+++| ++|++++++...+.++|..+++++.+.+.+.. +||+.|++.+++.++.
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH
Confidence 999999999999999988888889999997 67999999999999999988777777777666 9999999999888876
Q ss_pred HHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchh
Q 010239 228 GMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 306 (514)
Q Consensus 228 ~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (514)
.+..+ +++++|+.. .++ + . +.++++.+.++.++++..
T Consensus 170 ~~~~~~~~~~~~~~~-~~~------------------------~-~----------------~~~~~~~~~~~~~~~~~~ 207 (377)
T TIGR00890 170 IVLGAFLIGYPPGQL-IKT------------------------N-I----------------EVSVKDYTVWEMLRTPQF 207 (377)
T ss_pred HHHHHHheecCchhc-ccc------------------------C-c----------------ccchhhhhHHHHHcCccH
Confidence 55444 444433200 000 0 0 000011123455666555
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHH
Q 010239 307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 386 (514)
+...+......+. ......+.+.+.++.+. +..+.+.......++.++++++.|++.||++||+.+..+..+..+
T Consensus 208 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 208 WVLYLSFFLNAVS----GLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV 282 (377)
T ss_pred HHHHHHHHHHhHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4443332222221 12233344556677776 667788889999999999999999999999999998888777777
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh
Q 010239 387 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 466 (514)
+.+++... .....+.......+.+...+ ...+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..
T Consensus 283 ~~~~~~~~---~~~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 283 GMAAMLFI---PMLNDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHc---ccchhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66654431 11111222222222222222 223344467889999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHH
Q 010239 467 GAGILFYAFGVIAVLSL 483 (514)
Q Consensus 467 g~~~~~~~~~~~~~~~~ 483 (514)
||...|.+.+++.+++.
T Consensus 359 g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 359 GFEYTFIVTGAFALTSL 375 (377)
T ss_pred chhhHHHHHHHHHHHhc
Confidence 99988888877766654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=286.32 Aligned_cols=359 Identities=18% Similarity=0.238 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHH-HHH-----HHHHHHHHHHHHHHHhhhhhhHH
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLIT-SGS-----LYGALIGSILAFNIADILGRRRE 126 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~g~l~dr~Grr~~ 126 (514)
.....+++.+++.+|+..+++..|.+.+| ++.++.+.+.+. +.. .++..+++++.|+++||+|||++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 45677789999999999999999999998 888877765433 322 23335789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHH
Q 010239 127 LILAALLYLVGALVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 198 (514)
++.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 46899999999999999999999999999999999999999998888888
Q ss_pred HHHhhhhhc--------ccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCC
Q 010239 199 GYGIGSLLV--------DLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270 (514)
Q Consensus 199 g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (514)
++.+++.+. +.. +||++|++..+...+........||++++..+++
T Consensus 169 g~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------------------------- 222 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------------------------- 222 (434)
T ss_pred HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-------------------------
Confidence 888877763 344 9999999765443222222222333321100000
Q ss_pred CCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHH
Q 010239 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRV 349 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (514)
+.+.+..+++..+++ +.++......+.....+.....|.|.++++ .|. +..+.++.
T Consensus 223 -------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-~~~~~~~~ 279 (434)
T PRK15075 223 -------------------RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL-SAADSLLV 279 (434)
T ss_pred -------------------ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 000011122222222 122211222222333345677788988876 577 77778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec
Q 010239 350 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS 429 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (514)
.....++.+++.++.|+++||++||+.+..+..+..+....... ................+...+.+ ...+..+.+..
T Consensus 280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 357 (434)
T PRK15075 280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS-WLVAAPSFARMLAVELWLSFLYG-SYNGAMVVALT 357 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHHHHH-HHHhhHHHHHH
Confidence 88889999999999999999999999877654443322211111 11111121111121122222222 22334446789
Q ss_pred cccchhhhhhHHHHHHHHHHH-HHHHHHHhchHhHHhhCcc
Q 010239 430 EVFPLRLRGRGLSVAVLVNFG-ANALVTFAFSPLKDLLGAG 469 (514)
Q Consensus 430 ~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 469 (514)
|.+|++.|+++.++.+.+... ++.++|.+.|.+.|..|+.
T Consensus 358 e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 358 EVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 999999999999997665554 5888999999999998864
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=293.43 Aligned_cols=405 Identities=16% Similarity=0.178 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.+..+..+.++.+++.++....++.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 90 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33455666678888888999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHH-H--hh
Q 010239 210 VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL-T--EL 286 (514)
Q Consensus 210 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~ 286 (514)
. +||+.|++.++..++..+....+||++++..+++.+ . ..++ ..+.....+. ......... . ..
T Consensus 171 ~-~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~----~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~ 237 (496)
T PRK03893 171 W-GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGK--A----PVRT---MVDILYRGEH---RIINILLTLAAAAAL 237 (496)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhcccc--c----cchh---HHHHHhcchh---HHHHHHHHHHHHHHH
Confidence 7 999999886555444444444567765532211100 0 0000 0000000000 000000000 0 00
Q ss_pred -hhccccccchhH-------------HH-h-hhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHH
Q 010239 287 -SYVGEDKEVSLR-------------EV-F-HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRV 349 (514)
Q Consensus 287 -~~~~~~~~~~~~-------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 349 (514)
..-.......+. .. . .....++.........+..+........+.|.+++ +.|. +..+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~-~~~~~g~~ 316 (496)
T PRK03893 238 WFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGY-DPHTVANV 316 (496)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCC-CHHHHHHH
Confidence 000000000000 00 0 00011111111111112111112234567788875 6677 78889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec
Q 010239 350 SILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS 429 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (514)
.....++.+++.++.|++.||++||+.+..+..+..+..+++... ............+..++...+..+....++.
T Consensus 317 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (496)
T PRK03893 317 LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIG 392 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 999999999999999999999999998877665555444332211 1222222222222222222233344456788
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHH
Q 010239 430 EVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 479 (514)
Q Consensus 430 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 479 (514)
|.+|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...++++
T Consensus 393 ~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 393 GYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred hhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887765554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=289.99 Aligned_cols=395 Identities=14% Similarity=0.075 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
.|..+..++++.++..+|.++++..+|.+.+| +|.+..+.+|+.+.|.+++.++.+++|+++||+|||++++.
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~ 76 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML 76 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45667888899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcC-CCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 130 AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||++++++.+
T Consensus 77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998888887776 67899999999999999999999999999999
Q ss_pred cccchhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHH---HHHhCCCCCCCCchhH-HH--
Q 010239 209 LVAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCL---CRLRGQSIGDSAPTEV-DE-- 281 (514)
Q Consensus 209 ~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~-- 281 (514)
+. +|||.|++...++++..+ ..+++|++++. ++++.|..+......... ..+......+...... ..
T Consensus 157 ~~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-----~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 230 (495)
T PRK14995 157 HF-YWGSVFLINVPIVLVVMGLTARYVPRQAGR-----RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLL 230 (495)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 87 999999998888777443 44456765431 111112111111100000 0111111111111000 00
Q ss_pred -----HHH-hhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCchhHHHHHHHH
Q 010239 282 -----ILT-ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLG 354 (514)
Q Consensus 282 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 354 (514)
... ...+.+.+.+.-..+++|++.+....+..+..... .....++.|.+++.. |. ++.+++....+..
T Consensus 231 ~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~-s~~~ag~~~~~~~ 305 (495)
T PRK14995 231 TGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGL-SPLEAGMFMLPVM 305 (495)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 000 00001111122224677776655443333332222 234556777777764 55 8899999999999
Q ss_pred HHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccch
Q 010239 355 LFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL 434 (514)
Q Consensus 355 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 434 (514)
++..++.++.|++.||+|+|+.+..+..+..++..++... ....+.+......++.+.+.+... +.......+..|+
T Consensus 306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~ 382 (495)
T PRK14995 306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DFSTQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCH
Confidence 9999999999999999999998888877777666554432 112233333333444444444333 3334667788999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchHhHHh
Q 010239 435 RLRGRGLSVAVLVNFGANALVTFAFSPLKDL 465 (514)
Q Consensus 435 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 465 (514)
++++.+.++.++.+++|+.+|+.+.|.+.+.
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=289.50 Aligned_cols=398 Identities=14% Similarity=0.062 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010239 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (514)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 129 (514)
+|..+...++.......++..++..+|.+.++ |++..+.|++.+.+.+++.+++++.|+++||+|||+++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~--------g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~ 98 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ--------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 98 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHH
Confidence 34444445555566666666667778887654 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHH-HHHHhhh
Q 010239 130 AALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMV-GGYGIGS 204 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~ 204 (514)
+.++.+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++.
T Consensus 99 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 99 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999888763 7888999999999999988888888999999999999999999999999864 4555443
Q ss_pred hhcccccchhHHHHhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 010239 205 LLVDLVAGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283 (514)
Q Consensus 205 ~l~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+.... +||+.|++.++++++. .+..+++||+|+....++ .++.++ + .... .+
T Consensus 179 ~~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~---~---~~~~------~~--- 232 (452)
T PRK11273 179 GMAWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP----------IEEYKN---D---YPDD------YN--- 232 (452)
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC----------hhhhhh---c---cccc------cc---
Confidence 333333 9999999988887774 445556788765210000 000000 0 0000 00
Q ss_pred Hhhhhccccccch-hHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHH
Q 010239 284 TELSYVGEDKEVS-LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMT 361 (514)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
.+ +.++.+.+.. .+.+++++..+...+...+... ..+....|.|.++++ .++ +..+++....+..++.+++.
T Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~P~~l~~~~g~-s~~~~~~~~~~~~~~~~~g~ 306 (452)
T PRK11273 233 EK-HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGT 306 (452)
T ss_pred cc-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000001 1224455554444333333322 223556788888876 466 66778888888899999999
Q ss_pred HHHHHHHhHh--CCchhhhh-hHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhh
Q 010239 362 GLAVLVVERL--GRRPLLLG-GVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRG 438 (514)
Q Consensus 362 ~~~g~l~d~~--g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 438 (514)
++.|+++||+ +||+.... ...+..++.+++. .....+.+........++... .+.......+..|.+|++.+|
T Consensus 307 ~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g 382 (452)
T PRK11273 307 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---LNPAGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAG 382 (452)
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH---HhcccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhh
Confidence 9999999999 44443222 2222222222211 111122222222222222211 111112224567999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 439 RGLSVAVLVNFGANAL-VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 439 ~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
+++|+.+...++|+.+ +|.+.|.+.|+.||...|++.+++++++++....+.+
T Consensus 383 ~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 383 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998888765 7999999999999999998888888877766654443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=276.72 Aligned_cols=354 Identities=17% Similarity=0.181 Sum_probs=260.1
Q ss_pred cccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 010239 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144 (514)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (514)
........+.+|.+.++ +|+++.+.|+..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++
T Consensus 33 ~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 33 IIVEFLPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHHHHHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445667888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHH
Q 010239 145 PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224 (514)
Q Consensus 145 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~ 224 (514)
++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.++++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~ 184 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMG 184 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 9999999988777
Q ss_pred HHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhh
Q 010239 225 VIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303 (514)
Q Consensus 225 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (514)
++..+... ..||+++. +++.....++.+++
T Consensus 185 ~~~~l~~~~~~p~~~~~-------------------------------------------------~~~~~~~~~~~l~~ 215 (394)
T PRK10213 185 VLCIFWIIKSLPSLPGE-------------------------------------------------PSHQKQNTFRLLQR 215 (394)
T ss_pred HHHHHHHHHHCCCCCcc-------------------------------------------------cccchhHHHHHhcC
Confidence 66443332 35654320 00001123455666
Q ss_pred chhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHH
Q 010239 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSG 383 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 383 (514)
+..+...+...+..... +....+..|.+.++.|+ +....+......+++.+++.++.+++.||.+ |+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~ 290 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQ---FAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLV 290 (394)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHH
Confidence 55554433322222221 11223334777777787 7778899999999999999999999999954 4443333333
Q ss_pred HHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 384 IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
..++.+++... .++.+.......+.+.++. ...+...+++.+..| +.++.+.++.....++|..+|+.+.|.+.
T Consensus 291 ~~~~~~~l~~~----~~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~ 364 (394)
T PRK10213 291 LAVSALVLTLW----GSDKIVATGVAIIWGLTFA-LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL 364 (394)
T ss_pred HHHHHHHHHHH----hhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222211 2234444444444443333 333444456777777 55777888888888999999999999999
Q ss_pred HhhCcchhhHHHHHHHHHHHHHh
Q 010239 464 DLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 464 ~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
|..|+...+...+++.++..+.+
T Consensus 365 ~~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 365 DNIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred hccChhhHHHHHHHHHHHHHHHH
Confidence 99998877777666555544443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=286.62 Aligned_cols=387 Identities=18% Similarity=0.194 Sum_probs=276.5
Q ss_pred hhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 63 LYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA 142 (514)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 142 (514)
...++...++...|.+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred HHHHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 4445667778888888888 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHH
Q 010239 143 LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222 (514)
Q Consensus 143 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~ 222 (514)
++++++.++++|++.|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+.. +||+.|++.++
T Consensus 78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~ 156 (399)
T TIGR00893 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGV 156 (399)
T ss_pred HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877 89999999988
Q ss_pred HHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHh
Q 010239 223 LAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVF 301 (514)
Q Consensus 223 ~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (514)
+.++..+..+ +.||+|+.. +.. ..++.....+...... +.+...+.+....++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 212 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPPQKA------KWL----TEEEKYIVVGGLLAEQ--------------QGKGPSTPKKYQIKELL 212 (399)
T ss_pred HHHHHHHHhhheecCCCCcc------ccC----CHHHHhhcchhhcccc--------------ccccccCCCccchHHHh
Confidence 8777554444 456654310 000 0000000000000000 00001112233455666
Q ss_pred hhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhh-
Q 010239 302 HGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG- 379 (514)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~- 379 (514)
+++..+...+...+. .........+.|.++++ .+. +..+.+.......++.+++.++.+++.||++||+....
T Consensus 213 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (399)
T TIGR00893 213 KDRRVWGLALGQFLV----NIGLGFFLTWFPTYLVQERGL-SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF 287 (399)
T ss_pred cCHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhcc-cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 666544443333222 22334556677777655 455 77788899999999999999999999999999862111
Q ss_pred hHHHHHHHHHHHHHh-hhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 380 GVSGIVISLFLLGSY-YLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 458 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 458 (514)
......++.+..... ................... +...+..+....+..|.+|++.|++++|+.+...++|+.++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i 366 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 111111111111110 1111111222222222222 22233456777899999999999999999999999999999999
Q ss_pred chHhHHhhC-cchhhHHHHHHHHHHHHHhC
Q 010239 459 FSPLKDLLG-AGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 459 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 487 (514)
.|.+.+..| +...+.+.+++.+++.+..+
T Consensus 367 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 367 IGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999988 88888888777777665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=278.49 Aligned_cols=367 Identities=14% Similarity=0.163 Sum_probs=266.5
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
....++.+..+.......+.+|.+++| +|++..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 78 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALC 78 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 344456677777888888999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+.+.. +||
T Consensus 79 ~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr 157 (382)
T PRK10091 79 VIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWR 157 (382)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHH
Confidence 9999999999999999999999999999989999999999999999999999999999999999999999998877 999
Q ss_pred HHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
+.|++.+++.++..+ ..+++||.++. . + .+.
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~~~----~---~-----------------------------------------~~~ 189 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIRDE----A---K-----------------------------------------GGL 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcc----c---c-----------------------------------------cCH
Confidence 999999888776544 33456765320 0 0 000
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
+ ...+.++++..+...+...+. ..+......+.+.++ +..|. +..+.+.......++.+++.++.+++.||++
T Consensus 190 ~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~ 263 (382)
T PRK10091 190 R-EQFHFLRSPAPWLIFAATMFG----NAGVFAWFSYIKPYMMFISGF-SETSMTFIMMLVGLGMVLGNLLSGRLSGRYS 263 (382)
T ss_pred H-HHHHHhcChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhHHHheeccccC
Confidence 0 011223333333222211111 111112223334344 44676 7788999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHH
Q 010239 373 RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 452 (514)
Q Consensus 373 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 452 (514)
+|+.+..+..+.+++.+++... .+..+.......+...+......+.......+..|++.++.+ ..+...++|.
T Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~ 337 (382)
T PRK10091 264 PLRIAAVTDFIIVLALLMLFFF----GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGS 337 (382)
T ss_pred chhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHH
Confidence 9998888777776666544321 122233333333333222222222222334455555555544 3466789999
Q ss_pred HHHHHhchHhHHh-hCcchhhHHHHHHHHHHHHHhCCC
Q 010239 453 ALVTFAFSPLKDL-LGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 453 ~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
.+||.+.|.+.|. .+|...+...++++++........
T Consensus 338 ~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 338 AIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 578888887776666655554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=339.43 Aligned_cols=431 Identities=31% Similarity=0.561 Sum_probs=329.2
Q ss_pred HHHHHHhhcccccccccccccccCCCCCCC---cc-ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010239 57 PALGGLLYGYDIGSTSCATISIESPTLSGI---SW-YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 132 (514)
..++.+.++++...++...+.......... ++ .+.+..+.+++.+...+|..+|+++.|+++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 345668888888887776665552211110 00 01133567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 133 LYLVGALVTALAP---DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 133 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
+..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+.+.
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887766443
Q ss_pred c--cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhh
Q 010239 210 V--AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS 287 (514)
Q Consensus 210 ~--~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
. .+||+.+++.++++++..+..+++||+|+|+..++ +.+++++.++++++.+..+++..+..+ +.+
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~---------~~~~A~~~l~~~~~~~~~~~~~~~~~~---~~~ 232 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG---------RDEEAEKVLRKLRGKEIEDEEIEEIKA---EKK 232 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccc---------ccccccccccccccccccccccccccc---ccc
Confidence 3 15999999999999888788888999999998888 666777777776555333222222111 111
Q ss_pred hccccccchhHHHhhhch-hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010239 288 YVGEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVL 366 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 366 (514)
+ .++.+..++++++++. .++..+...+..+....+.+...+|.+.++++.+. +.. ........+...++.+++.+
T Consensus 233 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~ 308 (451)
T PF00083_consen 233 E-SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI-SNS--FLATLILGLVNFLGTLLAIF 308 (451)
T ss_pred c-ccccceeeeecccccccccccccccccccccccccccccccccccccccccc-ccc--cccccccccccccccccccc
Confidence 1 1111256777777654 44555555566666666666777888888888777 333 34445556777788888889
Q ss_pred HHhHhCCchhhhhhHHHHHHHHHHHH-HhhhccCCc---chHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHH
Q 010239 367 VVERLGRRPLLLGGVSGIVISLFLLG-SYYLFLDDV---PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 442 (514)
Q Consensus 367 l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 442 (514)
+.||+|||+++..+..+++++.+.++ ......... ....+....+....+..++.+..+.+..|.+|++.|+++.+
T Consensus 309 ~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~ 388 (451)
T PF00083_consen 309 LIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG 388 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence 99999999999998888888777765 111111221 33344444445556666777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCchhhhhc
Q 010239 443 VAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGL 503 (514)
Q Consensus 443 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
+....+++++++.+.+...+.+..+....+.+.++++++..++.+++.||++++..+|.++
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 9999999999999999999988877556788888888888888899999999999887654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=279.98 Aligned_cols=360 Identities=19% Similarity=0.181 Sum_probs=262.4
Q ss_pred HHHHHhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010239 58 ALGGLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (514)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (514)
.+..++...+.++..+.+|. +.++ +|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 34455666667777888886 5666 899999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhh--------hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 137 GALVTALA--------PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 137 ~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
+.+.+.++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 87766553 2577899999999999999999999999999999999999999999999999999999999988
Q ss_pred cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhh
Q 010239 209 LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSY 288 (514)
Q Consensus 209 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
.. +||+.+++.++..++..+.....|++++.
T Consensus 174 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 204 (399)
T PRK05122 174 WG-GLAGLGLLIMLLALLGLLLARPRPAVPPV------------------------------------------------ 204 (399)
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHhcCCCCCCC------------------------------------------------
Confidence 87 99999888776655443333222322110
Q ss_pred ccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010239 289 VGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVV 368 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 368 (514)
++++.++++.+++. +.......+.. ..+.....+.+.++.+.+. ...+.......++.+++.++.+++.
T Consensus 205 --~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~ 273 (399)
T PRK05122 205 --KGERLPFRRVLGRV--WPYGMGLALAS----IGFGTIATFITLYYAARGW---DGAALALTLFGVAFVGARLLFGNLI 273 (399)
T ss_pred --CccchhHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHccc---ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112222211 11111111111 1122344556666666555 3455666778888899999999999
Q ss_pred hHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHH
Q 010239 369 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 448 (514)
Q Consensus 369 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 448 (514)
||+++|+.+..+..+.+++..++.. .++.+..+....+.+.+... ..+.......|..|++.|++++|+.+...
T Consensus 274 ~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 347 (399)
T PRK05122 274 NRLGGLRVAIVSLLVEILGLLLLWL-----APSPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFL 347 (399)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999888877777766655543 22333333333333333333 23343456678889999999999999999
Q ss_pred HHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCC
Q 010239 449 FGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 449 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
.+|..+++.+.|.+.+..|++..+++.+++.+++.++.+.+.
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999899888888877776665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=282.43 Aligned_cols=370 Identities=14% Similarity=0.088 Sum_probs=245.7
Q ss_pred HhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (514)
+...++.....+.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 46 FTCFVSTFAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33333445567888999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc----c----ccch
Q 010239 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD----L----VAGW 213 (514)
Q Consensus 142 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~----~~~w 213 (514)
+++++++.+++.|++.|++.+... ....+++|++|+++|++++++.....++|..+++.+.+.+.. . ..+|
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 999999999999999999988654 456689999999999999999988777777777666554421 1 1289
Q ss_pred hHHHHhhHHHHHHHHHHhhcccCc-hhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccc
Q 010239 214 RYMYGASTPLAVIMGMGMWWLPAS-PRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292 (514)
Q Consensus 214 r~~f~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
|+.|++.++++++..+..++++++ |+. ..++.++ +.+.++..
T Consensus 198 r~~f~i~g~l~l~~~l~~~~~~~~~p~~--------------~~~~~~~-----------------------~~~~~~~~ 240 (476)
T PLN00028 198 RIAFFVPGLLHIIMGILVLTLGQDLPDG--------------NYRELKK-----------------------SGTMPKDS 240 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcCCCC--------------chhhHHh-----------------------cCcccccc
Confidence 999999999888766555555433 220 0000000 00000000
Q ss_pred ccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010239 293 KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERL 371 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 371 (514)
....+++.++++..+...+...... .....+..+.|.++.+ .|. +..+++.+.....++.++++++.|+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~g~-s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~ 315 (476)
T PLN00028 241 FSKVLRYGVTNYRTWILALTYGYSF----GVELTMDNIIAEYFYDRFGL-SLETAGAIAASFGLMNLFARPAGGYLSDVA 315 (476)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHH----HHHHHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1112344555555443333222221 1122344566666544 577 788899999999999999999999999999
Q ss_pred CCch-------hhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHH
Q 010239 372 GRRP-------LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA 444 (514)
Q Consensus 372 g~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 444 (514)
+||+ .......+.++..+++. ..++.+..+..++++..+...+ .+..+.+..+..| +.+|++.|+.
T Consensus 316 ~~r~~~~~r~~~~~~~~~l~~i~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~ 388 (476)
T PLN00028 316 ARRFGMRGRLWALWIVQTLGGVFCIWLG-----RANSLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLT 388 (476)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhh
Confidence 8652 11112222222122111 1222233333333333322222 2334456667665 7899999999
Q ss_pred HHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 445 VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 445 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+..+++|+.++|.+.+ ..+..+|...|++.+++.+++.++.++.
T Consensus 389 ~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 389 GAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8887777777776654 1123357788888887777776666544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=274.79 Aligned_cols=355 Identities=18% Similarity=0.146 Sum_probs=256.0
Q ss_pred Hhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (514)
++.....+...|.+|. +.++ +|.|..++|++.+++.+++.++++++|+++||+||||+++.+.++..++.+.
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3344456666777775 5667 8999999999999999999999999999999999999999998887776543
Q ss_pred HHh--------hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccc
Q 010239 141 TAL--------APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG 212 (514)
Q Consensus 141 ~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 212 (514)
... .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+.+.. +
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g 176 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-G 176 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-C
Confidence 322 3588999999999999999999999999999999999999999999999999999999999998877 9
Q ss_pred hhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccc
Q 010239 213 WRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292 (514)
Q Consensus 213 wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
||+.+.+..+..++........||.++. + +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~-~ 206 (392)
T PRK12382 177 FAALALTTMVLPLLAWAFNGTVRKVPAH-------------------------------------------------A-G 206 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCC-------------------------------------------------c-c
Confidence 9988776655544333222222322110 0 0
Q ss_pred ccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 293 KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
++.+.++..+.. +...+...+.. ........+.+.++++.+. + ..+.......++.+++.++.|++.||++
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g 277 (392)
T PRK12382 207 ERPSLWSVVGLI--WKPGLGLALQG----VGFAVIGTFVSLYFASKGW-A--MAGFTLTAFGGAFVLMRVLFGWMPDRFG 277 (392)
T ss_pred cCchHHHHHHHH--HHhHHHHHHHH----HHHhHHHHHHHHHHHhcCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000111111110 11111111111 1122344566667777665 2 3556666777888899999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHH
Q 010239 373 RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 452 (514)
Q Consensus 373 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 452 (514)
+|+.+..+..+..++.+++.. .++.+.......+.+.+.+. ..+.......|.+|+++||++.|+.+....+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 278 GVKVAIVSLLVETVGLLLLWL-----APTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred CCeehHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999988887777776665443 12333333333333333332 234444667888999999999999999999999
Q ss_pred HHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 453 ALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 453 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
.++|.+.|.+.|+.||+..|...+++.+++.++.+..
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888888877766544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=270.57 Aligned_cols=372 Identities=13% Similarity=0.075 Sum_probs=266.1
Q ss_pred HHHHHHhhcccccccccccccccC-CCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010239 57 PALGGLLYGYDIGSTSCATISIES-PTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 135 (514)
..++.+.....-...+++.+.+.+ + +|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.+
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~~-------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKIG-------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 333334444455667777777765 5 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc---
Q 010239 136 VGALVTALA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV--- 207 (514)
Q Consensus 136 ~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--- 207 (514)
+.+++.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999998 6688999999999999999999999997777777776666554433
Q ss_pred --cc------------ccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCC
Q 010239 208 --DL------------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD 273 (514)
Q Consensus 208 --~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (514)
.. ..+||..+++..++.++..++.+++.++++.
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------------- 237 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------------- 237 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------
Confidence 11 1258888888888877766555544332210
Q ss_pred CCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHH
Q 010239 274 SAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILL 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (514)
.+....+..+.+|++..|...+. +++.++++..+.++.|++.++. + +.........+.
T Consensus 238 ----------------~~~~~~~~~~vlk~~~~Wllsll----y~~tFG~fvg~s~~lp~~~~~~-~-~~~~~l~~~~l~ 295 (462)
T PRK15034 238 ----------------SRASIADQLPVLQRLHLWLLSLL----YLATFGSFIGFSAGFAMLAKTQ-F-PDVNILRLAFFG 295 (462)
T ss_pred ----------------cccCHHHHHHHhCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHH-c-ChHHHHHHHHHH
Confidence 11112345567777765544433 3444455556777888887663 2 333333345556
Q ss_pred HHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccC-CcchHHHHHHHHHHHHhhcccccccceeecccc
Q 010239 354 GLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF 432 (514)
Q Consensus 354 ~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (514)
.+...+.++++|+++||+|+++++..+++.+.++...+........ .+.+.....+.......+.+. ...+-++.+.+
T Consensus 296 ~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gn-gsvfk~ip~~f 374 (462)
T PRK15034 296 PFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGS-GSTFQMIAVIF 374 (462)
T ss_pred HHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccc-hHHHHhhHHHH
Confidence 7888899999999999999999998888777666544322211100 122222222222223333333 23345677777
Q ss_pred ch---------------------hhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCCCC
Q 010239 433 PL---------------------RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 433 p~---------------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
|+ ++.|.+.|+....+.+|+++.|.+.|...+..| +...|+.+.+..+++.++.+..+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 375 RQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred hhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 74 257899999999999999999999999998876 66678888888888888877655
Q ss_pred CC
Q 010239 491 XX 492 (514)
Q Consensus 491 ~~ 492 (514)
.+
T Consensus 455 ~r 456 (462)
T PRK15034 455 GR 456 (462)
T ss_pred cc
Confidence 43
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=281.74 Aligned_cols=403 Identities=15% Similarity=0.118 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCC---------------CccccCCchhhHHHHHHHHHHHHHHHHH
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG---------------ISWYDLSSVEIGLITSGSLYGALIGSIL 113 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 113 (514)
.++.+..++.++......|+..++...+.+.++..+. +++++++..+.|++.+.+.+++.+++++
T Consensus 16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~ 95 (465)
T TIGR00894 16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP 95 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence 3455556677777788889999999888887632111 0127999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHH
Q 010239 114 AFNIADILGRRRELILAALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFF 191 (514)
Q Consensus 114 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 191 (514)
.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus 96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 175 (465)
T TIGR00894 96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG 175 (465)
T ss_pred hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654 56889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCC
Q 010239 192 IVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQS 270 (514)
Q Consensus 192 ~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (514)
..+|.++++++++.+.+...+||+.|++.++++++..+.+++ .+|+|+... + . ..++. +..++.. +
T Consensus 176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~------~---~-~~~~~-~~i~~~~--~ 242 (465)
T TIGR00894 176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP------C---I-SKFEK-KYINSSL--Q 242 (465)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC------C---C-CHHHH-HHHHhhc--c
Confidence 999999999999999876229999999999988876555554 556554100 0 0 00110 0000000 0
Q ss_pred CCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHH
Q 010239 271 IGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRV 349 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (514)
.+..+.+.+.+++++++++..+...+.. +......+.+..|.|.++++ .+. +..+.++.
T Consensus 243 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lp~~l~~~~g~-s~~~~g~~ 302 (465)
T TIGR00894 243 ---------------GQKGSTRQSLPIKAIPKSLPVWAIWFAI----FGHFWLYTILPTYLPTFISWVLRV-SGKENGLL 302 (465)
T ss_pred ---------------cccCCCCCCCCHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCc-ChHHhHHH
Confidence 0000111233567777776555444333 33333345667788888765 566 78889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhCCchhh--------hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccc
Q 010239 350 SILLGLFKLIMTGLAVLVVERLGRRPLL--------LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
..+..++.+++.++.|+++||+++|+.. ..+......+..++.... .....+..+..+.+...+. ....
T Consensus 303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-~~~~ 379 (465)
T TIGR00894 303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--LSAAFYLTIIILTLANAVS-SGPL 379 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHh-hhhh
Confidence 9999999999999999999998654221 111111111111111111 1122232232332222222 2222
Q ss_pred cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh--C-cchhhHHHHHHHHHHHHHhCC
Q 010239 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL--G-AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g-~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+.......|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. + |...|.+.+++.+++.++...
T Consensus 380 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 380 AGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 333345567777 58999999999999999999999999988753 2 667788888777777766554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=275.46 Aligned_cols=378 Identities=15% Similarity=0.079 Sum_probs=276.6
Q ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 010239 47 VSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRE 126 (514)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 126 (514)
.++.++..+.+.+..+...++...+.|.+|.+.++ +|.+..+.++..+.+.+++.+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 80 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV 80 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 35566666777888888888888889999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 127 LILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
+..+.++.+++.+++.++++++.+++.|+++|++.+...+...+.+.|++|+++|.+.+++......+|..++|.+++.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 81 MLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999988899999999999999
Q ss_pred cccccchhHHHHhhHHHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 010239 207 VDLVAGWRYMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTE 285 (514)
Q Consensus 207 ~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
.+.. +||+.|++.+++.++..+.. +..||+++.. + + + ..
T Consensus 161 ~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-----~---------------------~~------- 200 (406)
T PRK15402 161 IHVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRV---G---E-----K---------------------LS------- 200 (406)
T ss_pred HHcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---c---c-----c---------------------cc-------
Confidence 8876 99999999888877754433 3466654210 0 0 0 00
Q ss_pred hhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010239 286 LSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLA 364 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (514)
.++...+++++++++..+...+...+.... ......+.|.++ ++.+. +..+.+.......++.+++.++.
T Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~-~~~~~g~~~~~~~~~~~~g~~~~ 271 (406)
T PRK15402 201 ----LKELGRDYKLVLKNRRFVAGALALGLVSLP----LLAWIALSPVILISGEQL-SSYEYGLLQVPVFGALIAGNLTL 271 (406)
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345566666555444333222221 112334456555 44666 66777877777788899999999
Q ss_pred HHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHH
Q 010239 365 VLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA 444 (514)
Q Consensus 365 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 444 (514)
+++.||+++|+.+..+..+..++..++...........+.......+.+.+..... +......... +++++|++.++.
T Consensus 272 g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~ 349 (406)
T PRK15402 272 ARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAM 349 (406)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHH
Confidence 99999999999988887777766666554321112222333333333333333322 2322333333 448899999999
Q ss_pred HHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHH
Q 010239 445 VLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 482 (514)
Q Consensus 445 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 482 (514)
+....++..+++.+.+.+.+..+.....+..++..++.
T Consensus 350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999988777554333333333333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=267.97 Aligned_cols=361 Identities=16% Similarity=0.128 Sum_probs=268.2
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
..+.++.++...+.+..++.+|.+.++ +|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~ 81 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444567778888999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++.+++++++|++.+++.|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+.. .|.
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~ 160 (381)
T PRK03633 82 AAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSV 160 (381)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cch
Confidence 9999999999999999999999999999999988888889999999999999999999999999999999987653 233
Q ss_pred HHHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
..+. .+..........+ ..+++++ ++++
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~ 189 (381)
T PRK03633 161 LPWV-TGLVLAAILPLLFTRILNQQA--------------------------------------------------ENHD 189 (381)
T ss_pred HHHH-HHHHHHHHHHHHHhcccCCCC--------------------------------------------------CCCC
Confidence 3322 2222221111111 1111100 0001
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
..+.++.++++.++........... .+.....+.|.+.++.+. +....+.......++.+++++..+++.||+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 264 (381)
T PRK03633 190 STSIWPMLKLRQARLGVNGCIISGI----VLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGR 264 (381)
T ss_pred CCCHHHHHHhcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCc
Confidence 1233455666554432222222111 122344567888888777 77788888889999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+.+..+.....++...+. . .........+.+.+ .....|.....+.|..|+++++.+.+..+...++|+.
T Consensus 265 ~~~l~~~~~~~~~~~~~~~------~--~~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 335 (381)
T PRK03633 265 LLVLRVQVFVVILGSIAML------S--QAAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL 335 (381)
T ss_pred HHHHHHHHHHHHHHHHHHh------h--hHHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988877776666554332 1 11112222222222 2233456667778989888888888888888999999
Q ss_pred HHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 454 LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++|.+.|.+.|+.|+.+.|.+.+.+.++..+..+.
T Consensus 336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998898888877766555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=276.41 Aligned_cols=368 Identities=14% Similarity=0.126 Sum_probs=270.0
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
....++.+..+.+....++.+|.+.++ +|+|..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566677777888889999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.....+||
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~ 162 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888765433999
Q ss_pred HHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccccc
Q 010239 215 YMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 294 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
+.|++.+++.++..+..++ .+.|+. ++ ++ + + + .++..+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~-~~~p~~---~~--~~-----~--------------~-~----------------~~~~~~ 200 (394)
T PRK03699 163 WVYACIGLVYVAIFILTLF-SEFPAL---GK--HA-----P--------------K-A----------------DKPVAK 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccc---cc--cC-----c--------------c-c----------------cCcccc
Confidence 9999988877765444333 222210 00 00 0 0 0 000000
Q ss_pred chhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
+.+ ++..+... +..++.......+..|.|.++++ .+. +..+++.......++..+++++.++++||+++
T Consensus 201 ----~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~ 270 (394)
T PRK03699 201 ----EKW-GIGVLFLA----IAALLYILAQLTFISWVPEYAQKKFGM-SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDL 270 (394)
T ss_pred ----ccC-ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 000 11111111 22222222234566788888855 576 78889999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+.+.....+..+...++.. .++.+......++.+ .......+...++..|..| +.++...+......++|..
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~ 343 (394)
T PRK03699 271 QRILTVLAGLALVLMYLFVN-----TDDPSHLLYAILGLG-FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM 343 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH
Confidence 99887766555554443322 122322222223332 2222233444456667666 4467788899999999999
Q ss_pred HHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 454 LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++|.+.|.+.+..|+...++..+++.+++.+.+..
T Consensus 344 i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 344 LTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999998888877777776555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=279.52 Aligned_cols=405 Identities=15% Similarity=0.081 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010239 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 130 (514)
+..+....+.......+........|.+++ +|+++.+.+++.+++.++..+++++.|+++||+|||+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~ 97 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH--------cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHH
Confidence 444455555666666666666777777764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 131 ALLYLVGALVTALA----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 131 ~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
.++.+++.+++++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+++++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999887764 46788899999999999999998999999999999999999999999999999998887765
Q ss_pred cccccchhHHHHhhHHHHHHHH-HHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 010239 207 VDLVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTE 285 (514)
Q Consensus 207 ~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (514)
.+...+||+.|++.++++++.. +..+++||+|+....++ . ++ .+. +..++..+ +
T Consensus 178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~-----~~-------~~~-~~~~~~~~-------~ 232 (438)
T TIGR00712 178 MAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-----I-----EE-------YRN-DYPDDYNE-------K 232 (438)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-----c-----hh-------ccc-cccccccc-------c
Confidence 5432389999999998887744 44555788765210000 0 00 000 00000000 0
Q ss_pred hhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHHHHH
Q 010239 286 LSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKLIMTGLA 364 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (514)
.+.+.+.++...+.+++++..+...+...+... ..+....|.|.++++. |. +...+++...+..+.++++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~ 307 (438)
T TIGR00712 233 AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYL----LRYGVLDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLC 307 (438)
T ss_pred cccccchHHHHHHHHccCchHHHHHHHHHHHHH----HHHHHHHhHHHHHHHccCC-ChhhHHHHHHHHHHHHHHHHHHH
Confidence 000000000111235566655544433333222 2235566888888764 65 77788888999999999999999
Q ss_pred HHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHH
Q 010239 365 VLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA 444 (514)
Q Consensus 365 g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 444 (514)
|++.||+++++....+.....+..+...........+.+......+..+ ....+..........|.+|++.|++++|+.
T Consensus 308 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 386 (438)
T TIGR00712 308 GWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFT 386 (438)
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HHHccHHHHHHHHHHHhcChhheeeehhhh
Confidence 9999999654322223222222111111111111112222222222222 111111111123567899999999999999
Q ss_pred HHHHHHHH-HHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 445 VLVNFGAN-ALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 445 ~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
+...++++ +++|.+.|.+.|+.|+...+.+.+++.+++.+..+.+.+|.|
T Consensus 387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988875 689999999999999999988888877777777766666544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=275.48 Aligned_cols=392 Identities=17% Similarity=0.208 Sum_probs=275.5
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010239 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 135 (514)
+++++.++..++...+++.+|.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34456677778888888999999988 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhH
Q 010239 136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 215 (514)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.+.. +||+
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~ 165 (471)
T PRK10504 87 LGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHW 165 (471)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred HHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHH---HhCCCCCCCCchhHHHHH--------
Q 010239 216 MYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCR---LRGQSIGDSAPTEVDEIL-------- 283 (514)
Q Consensus 216 ~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------- 283 (514)
.|++..+.+++..+... ..|+.+. ..++.|..+........... ..+.+.............
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPNYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALL 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHH
Confidence 99998877766544433 3444321 01111111111111111000 011110000000000000
Q ss_pred -HhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHH
Q 010239 284 -TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMT 361 (514)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
...++...+++....++++++.+....+..++... .......+.|++++. .|. ++...++......++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~ 314 (471)
T PRK10504 240 LYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGF-SPFHAGLMMIPMVLGSMGMK 314 (471)
T ss_pred HHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 00000111111112346777766554443333322 233455677888775 566 77888889988899999999
Q ss_pred HHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHH
Q 010239 362 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGL 441 (514)
Q Consensus 362 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 441 (514)
++.+++.||+++|+++..+..+.++...++... ......+.......+.+.+.+... +.......+..|++.++.++
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 391 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV--ALLGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGN 391 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchH
Confidence 999999999999999988887777666554432 111222212222222223333222 33446777889999999999
Q ss_pred HHHHHHHHHHHHHHHHhchHhHHhhCcc
Q 010239 442 SVAVLVNFGANALVTFAFSPLKDLLGAG 469 (514)
Q Consensus 442 g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 469 (514)
|+.++...+|..+++.+.|.+.+..|+.
T Consensus 392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 392 SLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998877653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=282.47 Aligned_cols=377 Identities=13% Similarity=0.108 Sum_probs=259.8
Q ss_pred cccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 010239 67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146 (514)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 146 (514)
....++..+|.+.++ +|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++
T Consensus 34 ~~~~~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 106 (455)
T TIGR00892 34 FPKAVTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN 106 (455)
T ss_pred hhcchhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh
Confidence 345567778888888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHH
Q 010239 147 FIIMVV-GRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225 (514)
Q Consensus 147 ~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 225 (514)
++.+++ .|+++|++.+...+...+++.++++ ++|++++++.+.+..+|..++|++++.+.+.. +||+.|++.+++.+
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLL 184 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 998875 5699999999877778888999996 78999999999999999999999999998887 99999999998877
Q ss_pred HHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhch
Q 010239 226 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 305 (514)
Q Consensus 226 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (514)
+..+..+++.+.++... +. +.+.+ ....... ...+. ... ...++..+....+.++++.
T Consensus 185 ~~~v~~~~~~~~~~~~~-~~-~~~~~---------------~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 242 (455)
T TIGR00892 185 HCCVCGALMRPVGPSQR-VS-KSKSK---------------EGLPPDG-STKKL---SKK-STAEKINRFLDFSLFTHRG 242 (455)
T ss_pred HHHHHHHHhCCCCcccc-cc-ccccc---------------ccCCCCC-ccccc---ccc-chhhhhhhhcchHHhcCch
Confidence 65444444322211000 00 00000 0000000 00000 000 0000000111124566665
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh--CCchhhhhhH--
Q 010239 306 LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL--GRRPLLLGGV-- 381 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~r~~~~~~~-- 381 (514)
++...+...+... .......+.+.+.++.+. +..+++...++.+++.++++++.+++.||. ++|+....+.
T Consensus 243 ~~~~~~~~~l~~~----~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 317 (455)
T TIGR00892 243 FLVYLSGNVIMFL----GFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL 317 (455)
T ss_pred HHHHHHHHHHHHH----HccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence 5444333322222 223445566777788887 788899999999999999999999999974 3333333322
Q ss_pred HHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchH
Q 010239 382 SGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 461 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 461 (514)
.+.+++.+++.. .++.+..+...++.+.+. ....+...+.+.|.+|++++++++|+.+....+|++++|.+.|.
T Consensus 318 ~~~~l~~ll~~~-----~~~~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 318 LFNGLTHLLCAL-----AGDYTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred HHHHHHHHHHHH-----hchHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence 222222222211 223333333333333333 33344556788899999999999999999999999999999999
Q ss_pred hHHhhC-cchhhHHHHHHHHHHHHH
Q 010239 462 LKDLLG-AGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 462 l~~~~g-~~~~~~~~~~~~~~~~~~ 485 (514)
+.+..| |...|++.+++.+++.+.
T Consensus 392 l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 392 LVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred eehhcCCcchHHHHhhHHHHHHHHH
Confidence 999875 888888877766665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=279.47 Aligned_cols=377 Identities=15% Similarity=0.100 Sum_probs=278.3
Q ss_pred cccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh-
Q 010239 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL- 143 (514)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~- 143 (514)
.+......+.+|.+.++ ++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence 33445666677888777 7889999999999999999999999999999999999999988888877766543
Q ss_pred ----hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHh
Q 010239 144 ----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA 219 (514)
Q Consensus 144 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 219 (514)
.++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +|++.|++
T Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~ 181 (417)
T PRK10489 103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGL 181 (417)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHH
Confidence 5678999999999999999888999999999999999999999999999999999999999998876 89999999
Q ss_pred hHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHH
Q 010239 220 STPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299 (514)
Q Consensus 220 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
.++..++..+..+.+|++++.. +. + +.. .++....++.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~-------~~----~--------------------~~~-----------~~~~~~~~~~ 219 (417)
T PRK10489 182 AAAGTFITLLPLLRLPALPPPP-------QP----R--------------------EHP-----------LRSLLAGFRF 219 (417)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-------cc----c--------------------ccc-----------hHHHHHHHHH
Confidence 8887777666666677654310 00 0 000 0000112334
Q ss_pred HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhh
Q 010239 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 378 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 378 (514)
.++++..+...+...+... ......+.|.+.++ .+. +....++......++.+++.++.+++.||.++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~ 293 (417)
T PRK10489 220 LLASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQM-GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLML 293 (417)
T ss_pred HHcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCC-ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH
Confidence 5555544433332222111 12345567777777 666 7788999999999999999999999999977777777
Q ss_pred hhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 379 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 458 (514)
.+..+.+++.+++.. .++.+...+..++++. ......+...+++.|..|++.||+++|+.+...++|..++|.+
T Consensus 294 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 294 LSTLGSFLAVGLFGL-----MPMWILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred HHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 776666666554432 2222322233333322 2222234445788999999999999999999999999999999
Q ss_pred chHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCchhhhhc
Q 010239 459 FSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGL 503 (514)
Q Consensus 459 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
.|.+.+..|+...++..+++.++..++.....++.++++.+|.++
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 999999999888888877776666666656567766665554433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=264.29 Aligned_cols=440 Identities=16% Similarity=0.204 Sum_probs=319.1
Q ss_pred cchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCcc-ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010239 45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISW-YDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 123 (514)
..|+. ...+.+..++.|.++||..+++.+.|.+...+...++. =+.++...+.+..+..+|..+||++.|+++||+||
T Consensus 35 ~qw~~-fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 35 LQWKH-FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hhHHH-HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444 44557788999999999999999999888775544321 12567788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHH
Q 010239 124 RRELILAALLYLVGALVTALAPD-------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM 196 (514)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 196 (514)
|+++...++++.+++++++++.. ..++...|++.|+|.|+-+|...++.+|...+++||...+.+.+..++|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 99999999999999998887532 57899999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhhhhcc----cc----------cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHH
Q 010239 197 VGGYGIGSLLVD----LV----------AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISC 262 (514)
Q Consensus 197 ~~g~~~~~~l~~----~~----------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
..|.+++-.+.. .. .-||..|.+.++++++.....+.+||++++.....++ .+.+.+.
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~--------~~~a~~d 265 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKK--------LKQAAGD 265 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcC--------Hhhhhhc
Confidence 888887776652 00 1499999999999999888888999999876333211 1111111
Q ss_pred HHHHhCCCCCCCCchhHHHHHHhhhhcccccc---chhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcC
Q 010239 263 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKE---VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAG 339 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
.++.... ++++.... +.....++ ..+...+..+.. ..++.....++..=..++....+...+++..+
T Consensus 266 ~~k~~~~--------~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig 335 (538)
T KOG0252|consen 266 MKKVLSV--------DIEAESTA-ESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIG 335 (538)
T ss_pred ccccccc--------ccchhhcc-ccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhc
Confidence 1110000 00000000 00111111 123333333322 33444445555444445566677777888777
Q ss_pred CCCCchhH--------HHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHH
Q 010239 340 FSAASDAT--------RVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLL 411 (514)
Q Consensus 340 ~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (514)
..+..+.. .-..+...+.++|..+...++|++|||++.+.+++++.+..+.++..+.... .....+++..+
T Consensus 336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~Gf~v~y~l 414 (538)
T KOG0252|consen 336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIGFVVLYSL 414 (538)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCceeehHHH
Confidence 73332222 1223333344456667778899999999999999999998888776433111 33344455555
Q ss_pred HHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH-----hhCcchhhHHHHHHHHHHHHHh
Q 010239 412 YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-----LLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
...+...+.+.....+.+|.+|.+.|+++.|+....+..|++++...+.++.+ ..|.+.++++++++++++.++.
T Consensus 415 ~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T 494 (538)
T KOG0252|consen 415 TFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT 494 (538)
T ss_pred HHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence 66666777777778899999999999999999999999999999999999999 7888999999999999998887
Q ss_pred CCCCCCCCCCchhhhhccc
Q 010239 487 FXXXXXXXXSFQRQRGLRL 505 (514)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~ 505 (514)
++ .+|++++..++.+.+.
T Consensus 495 ~l-~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 495 LL-IPETKGKSLEEISNEE 512 (538)
T ss_pred EE-eecccccCHHHhcChh
Confidence 77 5599999887764443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=271.71 Aligned_cols=380 Identities=21% Similarity=0.272 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010239 52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 131 (514)
..+....+..+..+++....++..|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 333444556667777777788889999888 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc
Q 010239 132 LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 211 (514)
++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 168 (398)
T TIGR00895 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF- 168 (398)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred chhHHHHhhHHHHHH-HHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcc
Q 010239 212 GWRYMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 290 (514)
Q Consensus 212 ~wr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
+||+.|++.+++.++ ..+..+++||++++...++ .++..+..++.......+... +.. +.+...
T Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~ 233 (398)
T TIGR00895 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR----------PETVRRIVNAIAPQMQAEAQS-ALP----EQKATQ 233 (398)
T ss_pred cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC----------HHHHHHHHHHHHHhccccccc-ccc----cccccc
Confidence 999999998766555 4445556888876543221 111111111111111000000 000 000000
Q ss_pred ccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 291 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
+..+...+.+++.+..+........ .+...........+.|++.++.+. +..+.+.......++.+++.++.+++.||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (398)
T TIGR00895 234 GTKRSVFKALFQGKTARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLADR 311 (398)
T ss_pred chhhHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111112223333333322222222 222333344566677877788887 77888999999999999999999999999
Q ss_pred hCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHH
Q 010239 371 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 450 (514)
Q Consensus 371 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 450 (514)
+++|+.... ..+..+...++... ..+.+......++.+.+.+. ..+...++..|.+|++.|+++.|+.+....+
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 385 (398)
T TIGR00895 312 LGPRVTALL-LLLGAVFAVLVGST----LFSPTLLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIGRL 385 (398)
T ss_pred cchHHHHHH-HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 999844433 33333332222211 12333333333333333333 3455668899999999999999999999999
Q ss_pred HHHHHHHhchHh
Q 010239 451 ANALVTFAFSPL 462 (514)
Q Consensus 451 g~~~~~~~~g~l 462 (514)
|..++|.+.|.+
T Consensus 386 g~~~g~~~~G~l 397 (398)
T TIGR00895 386 GAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhHHhc
Confidence 999999998875
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=277.80 Aligned_cols=392 Identities=16% Similarity=0.196 Sum_probs=281.2
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010239 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (514)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 133 (514)
+..++++.++..++....++.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence 3455677788888999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccch
Q 010239 134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 213 (514)
..++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.++. +|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w 155 (485)
T TIGR00711 77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HW 155 (485)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 99
Q ss_pred hHHHHhhHHHHHHHHHH-hhcccCchhHHHHhhccccCCccccHHHHH--HHHH--HHhCCCCCCCCchhHHHHH-----
Q 010239 214 RYMYGASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAI--SCLC--RLRGQSIGDSAPTEVDEIL----- 283 (514)
Q Consensus 214 r~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~----- 283 (514)
|+.|++.++++++..+. .+++||+++. ..++.|+.+..-... .... ..++.+.++..+.......
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (485)
T TIGR00711 156 RWIFLINVPIGIIVVVVAFFILPRDKPA-----ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV 230 (485)
T ss_pred eehhhhhhHHHHHHHHHHHHHcCCcccc-----ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence 99999988887765443 3445654320 001111111000000 0000 0111111111111111000
Q ss_pred ----HhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHH
Q 010239 284 ----TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKL 358 (514)
Q Consensus 284 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 358 (514)
....+.+.+++....++++++.++...+..++..+. +....++.|.++++ .|. +..+++.......++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~-s~~~~g~~~~~~~~~~~ 305 (485)
T TIGR00711 231 AIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGY-TALQAGLHILPVGLAPM 305 (485)
T ss_pred HHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 000001111122224567776655554443333332 23455677877766 466 88899999999999999
Q ss_pred HHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhh
Q 010239 359 IMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRG 438 (514)
Q Consensus 359 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 438 (514)
++.++.|++.||++||+.+..+..+.+++..++.... ......+.......+.+.+.+....+. .....+..|+++++
T Consensus 306 ~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g 383 (485)
T TIGR00711 306 LSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF-TPDTPFLAIALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIA 383 (485)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHh
Confidence 9999999999999999998888877777766554211 111222333333333333333333333 35566788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhchHhHHh
Q 010239 439 RGLSVAVLVNFGANALVTFAFSPLKDL 465 (514)
Q Consensus 439 ~~~g~~~~~~~~g~~~~~~~~g~l~~~ 465 (514)
++.|+.+..+.+|+.+++.+.+.+.++
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=261.99 Aligned_cols=364 Identities=21% Similarity=0.215 Sum_probs=274.1
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhhhhhhhh
Q 010239 88 WYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD--FIIMVVGRFVFGIGIGLAM 165 (514)
Q Consensus 88 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~ 165 (514)
.++++..+.|++.+.++.|+.+++++.|++.||||.|+++..+.++.++++++...+.+ ++.+++.|++||++.|..+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence 37999999999999999999999999999999999999999999999999999998754 5688999999999999999
Q ss_pred hHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccCchhHHHHh
Q 010239 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASPRWLLLC 244 (514)
Q Consensus 166 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~ 244 (514)
|+...+.++|.|++||++..++..++..+|.+++.+++|++.+...||++.|++.++++++..+++++ ..|+|....
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~-- 224 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP-- 224 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC--
Confidence 99999999999999999999999999999999999999999998349999999999999997666654 556665110
Q ss_pred hccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccc--ccchhHHHhhhchhhHHHHHHHHHHHHHhh
Q 010239 245 AMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED--KEVSLREVFHGKCLKALIIGAGLVLFQQIT 322 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (514)
...++|.+...+....++.+ .+.+++++++++..+..++..+. ...
T Consensus 225 ----------------------------~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~----~~~ 272 (466)
T KOG2532|consen 225 ----------------------------NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFG----GNW 272 (466)
T ss_pred ----------------------------CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHH----HHH
Confidence 00111122222221111222 46789999999877666554433 334
Q ss_pred ChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc--------h-hhhhhHHHHHHHHHHHHH
Q 010239 323 GQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR--------P-LLLGGVSGIVISLFLLGS 393 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~-~~~~~~~~~~~~~~~~~~ 393 (514)
++..+..|.|.|+++.-..+..+.|++.++..+...+..+++|.++||+.+| | .-.++....+++++.+++
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~ 352 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF 352 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence 4567888999998875444899999999999999999999999999998663 1 122333444444443332
Q ss_pred hhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH---hhCcch
Q 010239 394 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD---LLGAGI 470 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~ 470 (514)
......+..+.++.+..+..+.... -.+.-..+..| ++.+..+|+.+....+.++++|.+.|.+.. ...|+.
T Consensus 353 ---~~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 353 ---TSDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred ---cCCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 1222333333333333333322221 11222333355 889999999999999999999999999983 346899
Q ss_pred hhHHHHHHHHHHHHHhCCCC
Q 010239 471 LFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~ 490 (514)
+|++.+++.+++.++..++.
T Consensus 428 VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHhchheeEee
Confidence 99999999988886665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=274.82 Aligned_cols=373 Identities=17% Similarity=0.127 Sum_probs=261.0
Q ss_pred HHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010239 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (514)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (514)
++...++...+++..|.+.++ +|++..+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 455666778888889999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHH-HhhhhhcccccchhHHHHh
Q 010239 141 TALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGY-GIGSLLVDLVAGWRYMYGA 219 (514)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~~wr~~f~~ 219 (514)
++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .++..+.+.. +||+.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIV 155 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 4666666665 99999999
Q ss_pred hHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhH
Q 010239 220 STPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLR 298 (514)
Q Consensus 220 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (514)
.+++.++. .+..++.+|+|+....++ .+ +.+.++ . +.+ .++.+++.+..+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-------------~-~~~------~~~~~~~~~~~~~~~~ 210 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSPQSCGLPP----AE-EMPNEE-------------P-DGD------AEKKEEELTKKQIFLQ 210 (379)
T ss_pred HHHHHHHHHHHHheeeCCCccccccCc----cc-cCcccc-------------c-ccc------cccccccccchHHHHH
Confidence 88887764 444445676654211000 00 000000 0 000 0000000111122345
Q ss_pred HHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhh
Q 010239 299 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLL 377 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 377 (514)
++++++..+...+...+.... ......+.|.++++ .+. +..+.+.......++.+++.++.+++.||..+|+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 285 (379)
T TIGR00881 211 YVLLNKVLWYISLGYVFVYVV----RTGILDWSPLYLTQEKGF-SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285 (379)
T ss_pred HHHhcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch
Confidence 566666555444333333222 23455667777654 566 778899999999999999999999999986443322
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 378 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 457 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 457 (514)
.............+.........+.+....... ..+....+..+....+..|.+|++.|+++.|+.+....+|+.++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 364 (379)
T TIGR00881 286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLF-ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGL 364 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH-HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhh
Confidence 222222111111111111111112222222222 2222222333344467889999999999999999999999999999
Q ss_pred hchHhHHhhCcchhh
Q 010239 458 AFSPLKDLLGAGILF 472 (514)
Q Consensus 458 ~~g~l~~~~g~~~~~ 472 (514)
+.|.+.|..||+..|
T Consensus 365 ~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 365 PLGYLADGFGWAGAF 379 (379)
T ss_pred hHHHHHHhhcccccC
Confidence 999999999987653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=266.20 Aligned_cols=352 Identities=18% Similarity=0.130 Sum_probs=265.4
Q ss_pred HHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010239 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA 138 (514)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 138 (514)
++.++..+......+.+|.+..+ ++.+..+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 78 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLV 78 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHH
Confidence 34455555666677778888877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccch
Q 010239 139 LVTALAP-----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213 (514)
Q Consensus 139 ~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 213 (514)
++.++++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.. +|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~ 157 (365)
T TIGR00900 79 AVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GI 157 (365)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hH
Confidence 9988888 99999999999999999999999999999999999999999999999999999999999998877 99
Q ss_pred hHHHHhhHHHHHHHHHHhhcc--cCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccc
Q 010239 214 RYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 291 (514)
Q Consensus 214 r~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (514)
|+.|++.++..++..+..+.+ ||+++. +. + +.+ ++. .+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~-~~~-------------------~~~----------~~ 197 (365)
T TIGR00900 158 KWAIWVDAVGFAISALLIVSVRIPELAAS--------EI--Q-ALS-------------------NAV----------LR 197 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCc--------cc--c-ccc-------------------hhH----------HH
Confidence 999999887766654444433 222110 00 0 000 000 00
Q ss_pred cccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 292 DKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
+....++.+++++..+...+...+...... .....+.|++.++ .+. +..+.+.......++.+++.++.+++.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (365)
T TIGR00900 198 DTREGIKFVLKNPLLRTLLLLALLFNLVFA---PAIVALFPYVQSKYLGR-GSTHYGWVLAAFGLGALLGALLLGLLGRY 273 (365)
T ss_pred HHHhHHHHHHcCcHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234556666665544443333322221 1222566777765 566 77888999999999999999999999999
Q ss_pred hCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHH
Q 010239 371 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 450 (514)
Q Consensus 371 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 450 (514)
.+||+.+..+..+.+++..++... .++.+...+..++.+.+. ....+...++..|..|++.|+++.|+.+...++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 348 (365)
T TIGR00900 274 FKRMALMTGAIFVIGLAILVVGLT----PPNFPLFLVLWFAIGVGY-GPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA 348 (365)
T ss_pred hchhHHHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999998887766666665554431 112333333333333333 333455668889999999999999999999999
Q ss_pred HHHHHHHhchHhHHhhC
Q 010239 451 ANALVTFAFSPLKDLLG 467 (514)
Q Consensus 451 g~~~~~~~~g~l~~~~g 467 (514)
+..++|.+.|.+.|..|
T Consensus 349 ~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 349 AWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998754
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=263.79 Aligned_cols=342 Identities=15% Similarity=0.140 Sum_probs=254.6
Q ss_pred cccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 010239 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144 (514)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (514)
.+....+.|.+|.+.++ +|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 19 FLATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHH
Q 010239 145 PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224 (514)
Q Consensus 145 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~ 224 (514)
++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.. +||+.|++.+++.
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~ 170 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAIT 170 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Confidence 999999999999999998888888899999999999999999999999999999999999999887 9999999998888
Q ss_pred HHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhc
Q 010239 225 VIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 304 (514)
Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (514)
++..+..++++|+++. + + +++++.+++++++++
T Consensus 171 ~~~~~~~~~~~~~~~~----~-----------~--------------------------------~~~~~~~~~~~~~~~ 203 (401)
T PRK11043 171 LLLILPTLRLKPSKKA----R-----------K--------------------------------QSQDALTFKQLLKSK 203 (401)
T ss_pred HHHHHHHHHcCCCCCc----c-----------c--------------------------------cchHHHHHHHHHcCh
Confidence 7766655556554320 0 0 000112345566665
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHH
Q 010239 305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGI 384 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 384 (514)
..+...+....... .+.....+.|.++++.|. +..+.++......++.+++.++.+++.||+++|+.........
T Consensus 204 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~ 278 (401)
T PRK11043 204 TYLGNVLIFAACSA----AFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLF 278 (401)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 54433322222111 122344567778888877 7778888888888899999999999999999988766555554
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 385 VISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
+++.+.+........+..+..+....+.+.+.+ ...+.......+..| +.++++.|+.+.....++..++.+.|.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 279 AVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444433322211112222322222333333333 333444455667677 579999999999999999999999999887
Q ss_pred hhCc
Q 010239 465 LLGA 468 (514)
Q Consensus 465 ~~g~ 468 (514)
....
T Consensus 357 ~~~~ 360 (401)
T PRK11043 357 TPLL 360 (401)
T ss_pred CChh
Confidence 4433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=269.14 Aligned_cols=386 Identities=20% Similarity=0.218 Sum_probs=285.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.+++++++|++.+++.|+++|++.+......
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccc
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKR 248 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 248 (514)
..++.|++++++|+.++.+ ......+..++++.++++.. +||+.+++..+++++.++..++.||+|+|+..++
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g--- 265 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG--- 265 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC---
Confidence 9999999999999999999 77777777888888888776 8999999999999987777667779999999888
Q ss_pred cCCccccHHHHHHHHHHHhCCCCCCCCchhHHHH---HHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChh
Q 010239 249 KGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI---LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQP 325 (514)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (514)
+.+++.+.++++.+.+.......+..+. .........+++..+.++++.+..+...+...+.++..
T Consensus 266 ------~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----- 334 (521)
T KOG0255|consen 266 ------RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF----- 334 (521)
T ss_pred ------chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH-----
Confidence 6788888887776554222222111111 11111122233455788888875444444433333221
Q ss_pred HHHHhH-HHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 326 SVLYYA-ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 326 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
...++. +......|. +........+.....+....+...|+.|||.....+..+..++++..++.... ...+.
T Consensus 335 ~~~y~gl~~~~~~lg~----~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 408 (521)
T KOG0255|consen 335 SLVYYGLSLNVSGLGG----NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--LGGWL 408 (521)
T ss_pred hHHHHhhhhhhhhcCc----hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--chhHH
Confidence 122222 222233333 45566666666888888888999999999999999999988888887764321 11123
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 484 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 484 (514)
......+..++...++... +.+..|++|+..|..+.+..+....++++++|.+.-.... ......+..++.+..+..+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence 3333334444444444434 6899999999999999999999999999999987654443 3333333335666666666
Q ss_pred HhCCCCCCCCCCchhh
Q 010239 485 FIFXXXXXXXXSFQRQ 500 (514)
Q Consensus 485 ~~~~~~~~~~~~~~~~ 500 (514)
+...+.||++.+...+
T Consensus 487 ~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHhcCcccCCCCCch
Confidence 6666788888776544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=259.36 Aligned_cols=374 Identities=18% Similarity=0.204 Sum_probs=262.9
Q ss_pred cchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010239 45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR 124 (514)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 124 (514)
.+.+..+..++++++...++..|...+..+.+.+++. ||++++..|++.+.+.+.+.+++|++|+++|||.||
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~ 98 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK 98 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3445556666788889999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhh
Q 010239 125 RELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS 204 (514)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 204 (514)
+++.+|.+++.++.++++++..||++.++|.+.|+|.+...|.++++++|.+|.++|++++++++.+.++|..+|.+.+.
T Consensus 99 ~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 99 RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhHHHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 010239 205 LLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283 (514)
Q Consensus 205 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+.+....|||.|+..+++++++.++.+ +.+|+++.-.. +.+. .+..
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~-----~~~~----------------~~~~----------- 226 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD-----EVDG----------------ENKM----------- 226 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc-----cccc----------------CCcC-----------
Confidence 9998774699999999999999665555 45665431000 0000 0000
Q ss_pred HhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH----HHcCCCCCchhHHHHHHHHHHHHH
Q 010239 284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL----QSAGFSAASDATRVSILLGLFKLI 359 (514)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
........++.+.+.+++......+......+. .+.+.+|.|.+. +-.+. +.....++..+...++.+
T Consensus 227 ---~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv----~Gs~sww~p~~~~~~~~~~~~-~~~~~~ifg~vt~~~G~l 298 (493)
T KOG1330|consen 227 ---VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV----IGSLSWWAPAFIYYSYELIGF-DHNATLIFGGVTCAGGSL 298 (493)
T ss_pred ---CCCccchHHHHHHHHccCceeeehHHHHHHHHh----ccccchhhhhHHHHHHHHhCC-ccccchhhhhHHHhhchh
Confidence 000111112333344444444333333333332 224444554443 33444 666777888889999999
Q ss_pred HHHHHHHHHhHhCCc----hhhh----hhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccc
Q 010239 360 MTGLAVLVVERLGRR----PLLL----GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 431 (514)
Q Consensus 360 ~~~~~g~l~d~~g~r----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
|.+++|.++||+.|+ .... .+......+..++.+... ...........+++++............-+..|+
T Consensus 299 Gvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~v 377 (493)
T KOG1330|consen 299 GVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-FTSSSMIFGLILFLVGETISWFNWATNNPIFLEV 377 (493)
T ss_pred hheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhcccccccceeeEe
Confidence 999999999995331 1111 111111111111111111 1222222222222233222222233444678899
Q ss_pred cchhhhhhHHHHHHHHH-HHHHHHHHHhchHhHHhh
Q 010239 432 FPLRLRGRGLSVAVLVN-FGANALVTFAFSPLKDLL 466 (514)
Q Consensus 432 ~p~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~ 466 (514)
+|++.|.+++++...+. .+|.+-+|.+.|.+.|+.
T Consensus 378 V~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 378 VPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 99999999999999874 555555666999999874
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=266.92 Aligned_cols=367 Identities=15% Similarity=0.092 Sum_probs=263.0
Q ss_pred HHHHhhcccccccccccccccCCCCCCCccccCCchh-----hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010239 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVE-----IGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (514)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 133 (514)
++.++.+.......+.+|.+.++ +|++..+ .|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 21 LGCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 44455666667778889998887 7887554 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccch
Q 010239 134 YLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 213 (514)
.+++.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+.+.. +|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~ 171 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GL 171 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CH
Confidence 99999999999999999999999999865 56777889999999999999999999999999999999999998877 99
Q ss_pred hHHHHhhHHHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccc
Q 010239 214 RYMYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292 (514)
Q Consensus 214 r~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (514)
|+.|++.+++.++..+.. +++||+++... +.+ ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---------------------------------~~ 206 (408)
T PRK09874 172 RPVFFITASVLFLCFLVTLFCIRENFQPVS------------KKE---------------------------------ML 206 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccc------------chh---------------------------------hh
Confidence 999999988877654443 44555432000 000 00
Q ss_pred ccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 010239 293 KEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAAS---DATRVSILLGLFKLIMTGLAVLVVE 369 (514)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d 369 (514)
+..+..+.++++..........+... ........+.+.+..+.+..... ..+.......++.+++.+..|++.|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d 283 (408)
T PRK09874 207 HMREVVTSLKNPKLVLSLFVTTLIIQ---VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGD 283 (408)
T ss_pred HHHHHHHhCcCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011222333332221211111111 11122333445555554331221 2345556667888889999999999
Q ss_pred HhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHH
Q 010239 370 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNF 449 (514)
Q Consensus 370 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 449 (514)
|++||+.+..+..+..++.+.+.. .++.+...+...+.+.+.+ ...+...+...+..|++.+|+.+++.+....
T Consensus 284 r~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 284 RIGPEKILITALIFSVLLLIPMSF-----VQTPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD 357 (408)
T ss_pred ccccchhHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence 999999988877766655554432 1233333333333333332 3334445667788888999999999999999
Q ss_pred HHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 450 GANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 450 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+|..++|.+.|.+.+..||...|.+.+++.+++.++.+.
T Consensus 358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888887766654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=263.58 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=255.8
Q ss_pred HhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT 141 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 141 (514)
+....+.....+.+|.+.++ +|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 87 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 44556777888899999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhH
Q 010239 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST 221 (514)
Q Consensus 142 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 221 (514)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.+
T Consensus 88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~ 166 (385)
T TIGR00710 88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS 166 (385)
T ss_pred HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877 9999999988
Q ss_pred HHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHH
Q 010239 222 PLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300 (514)
Q Consensus 222 ~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (514)
++.++..+.. ++.||+++.. ++ .+ .++.....++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~------~~----~~----------------------------------~~~~~~~~~~~ 202 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYE------AR----IQ----------------------------------ISTYFETFLLL 202 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCc------cc----CC----------------------------------HHHHHHHHHHH
Confidence 8877754443 4466653200 00 00 00011134455
Q ss_pred hhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhh
Q 010239 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG 379 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 379 (514)
++++..+...+...+... .......+.|.+++ +.+. ++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 203 LKSKMFWGYALIYGASFG----GFFAFFSGAPFVYIDIMGV-SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HcCchhHHHHHHHHHHHH----HHHHHHHcChHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666655544433322222 12234455566655 5666 77888999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhc
Q 010239 380 GVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 459 (514)
+..+..++.+++...... ....+........+.+.......+.......|..| +.++++.++.+...+.++.+.+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 278 GLILFAVSAVLLEITAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666555432111 11222222222222222222233444566778877 6799999999999887777777777
Q ss_pred hHhHH
Q 010239 460 SPLKD 464 (514)
Q Consensus 460 g~l~~ 464 (514)
+.+.+
T Consensus 356 ~~~~~ 360 (385)
T TIGR00710 356 SLIHG 360 (385)
T ss_pred Hhccc
Confidence 74443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=261.86 Aligned_cols=369 Identities=17% Similarity=0.136 Sum_probs=259.8
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
....+..+...++.....|.+|.+.++ ++.+..+.++..+++.+++.++++++|+++||+|||++++.+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 91 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIF 91 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHH
Confidence 444666677778888999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||++++.+.+.. +||
T Consensus 92 ~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~ 170 (413)
T PRK15403 92 TLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWK 170 (413)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH
Confidence 9999999999999999999999999998777888889999999999999999999999999999999999998876 999
Q ss_pred HHHHhhHHHHHHHHHH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
+.|++.+++.++..+. .+++||+++. ++ ++ .. .+..
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~--~~---------------------------~~-----------~~~~ 207 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVKR---GA--VP---------------------------FS-----------AKSV 207 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccc---cC--CC---------------------------CC-----------hHHH
Confidence 9999999887775544 4457876430 00 00 00 0001
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
..+++++++++.++...+...+.... +..+..+.|.++++. |. +..+.++.......+.+++..+.+++.++..
T Consensus 208 ~~~~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~-s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~ 282 (413)
T PRK15403 208 LRDFRNVFRNRLFLTGAATLSLSYIP----MMSWVAVSPVILIDAGGM-TTSQFAWTQVPVFGAVIVANAIVARFVKDPT 282 (413)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHhChHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 12455677777666544443332222 234445667777765 55 7888888888888888888888888765554
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHH
Q 010239 373 RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN 452 (514)
Q Consensus 373 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 452 (514)
+++.......+..++.+++........+..+..+...+++..+.+... |......-.. ....+|++.++.+.....+.
T Consensus 283 ~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~ 360 (413)
T PRK15403 283 EPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVILMVM 360 (413)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHHHHHH
Confidence 444433222233333332222111112222222333333333333332 3332111111 12237999999999999999
Q ss_pred HHHHHhchHhHHhhCcchhhHHHHHHHHHH
Q 010239 453 ALVTFAFSPLKDLLGAGILFYAFGVIAVLS 482 (514)
Q Consensus 453 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 482 (514)
..++...+++.++ +-...|...++++.+.
T Consensus 361 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 361 AVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 9999999988775 5555665555544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=259.21 Aligned_cols=362 Identities=17% Similarity=0.138 Sum_probs=260.9
Q ss_pred HHHhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHH
Q 010239 60 GGLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-LAALLYLVG 137 (514)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~ 137 (514)
.++..++..+...|.+|. ++++ +|.|..+.|++.+++.++..+.+++.|+++||+||||.++ .+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~ 77 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA 77 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 345566666777787776 4566 8999999999999999999999999999999999988755 466666778
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhH--HhHHHHHHHHHHHHHHHhhhhhcccccchhH
Q 010239 138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL--ISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (514)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 215 (514)
.++++++++++.+++.|++.|.+.+...|...+++.|+.|+++|++. .++...+.++|..+++++++.+.+.. +||+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~ 156 (375)
T TIGR00899 78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTV 156 (375)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHH
Confidence 88899999999999999999988888889888999999887777654 67888889999999999999998877 9999
Q ss_pred HHHhhHHHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccccc
Q 010239 216 MYGASTPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 294 (514)
Q Consensus 216 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (514)
.|++.+++.++..+.. +++||.|++..+ ++++
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 189 (375)
T TIGR00899 157 MFLTAALAFVLCGVLVWLFLPSYPRGAPG-----------------------------------------------ALTR 189 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCccc-----------------------------------------------ccCc
Confidence 9999998877755444 447876541000 0000
Q ss_pred chhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
.+.++.++++..+.......+.+.. ......+.|.++ ++.+. +..+.+.......+..+++.++.|++.||+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~ 264 (375)
T TIGR00899 190 LEVRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGL-PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGK 264 (375)
T ss_pred chhhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 1122234444444333332222221 112334455554 45666 77778887777777888889999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+.+..+..+..+....+.. .++.+.......+.+.+.+. ..+....+..|..|+ +++++.++.+...++|..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 337 (375)
T TIGR00899 265 RRLMLLAALAGVAFYTGLAA-----DNSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWI 337 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHH
Confidence 99887766554444333221 12233333332222222222 234455677888885 567999999999999999
Q ss_pred HHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 454 LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++|.+.|.+.+..|++..+++.+++.+++.++..+
T Consensus 338 ~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 338 IAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999998998888888777766544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=259.94 Aligned_cols=358 Identities=13% Similarity=0.079 Sum_probs=249.6
Q ss_pred ccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---h-hhhHHH
Q 010239 74 ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---L-APDFII 149 (514)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~ 149 (514)
.++.+.+| +|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++++++. + .++++.
T Consensus 35 ~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (402)
T TIGR00897 35 WLSPFLKA-------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPL 107 (402)
T ss_pred hHHHHHHH-------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHH
Confidence 34455556 899999999999999999999999999999999999999999999999877653 3 357889
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHH-HHHHHhhhhhcccccchhHHHHhhHHHHHHHH
Q 010239 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGM-VGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG 228 (514)
Q Consensus 150 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 228 (514)
+++.|+++|++.+...+...+.+.+++|+++|++++|+.+++.++|. .+++++++.+.+.. +|+..++......++..
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~ 186 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGG 186 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHH
Confidence 99999999999998888888899999999999999999999999997 68999999888876 87666555444333322
Q ss_pred HH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhh
Q 010239 229 MG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK 307 (514)
Q Consensus 229 ~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (514)
++ .++.++.++. + +++ + +.+ .++....++++++++..+
T Consensus 187 ~~~~~~~~~~~~~----~-~~~-----~--------------------~~~-----------~~~~~~~~~~~~~~~~~~ 225 (402)
T TIGR00897 187 VIALFSNKDIFTP----Q-HMQ-----T--------------------REK-----------FSELGKAATILFTNPNVL 225 (402)
T ss_pred HHHHhccCCCCCc----c-ccc-----C--------------------Ccc-----------hhhHHHHHHHHHcChhHH
Confidence 22 2233432210 0 000 0 000 000011244566666554
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhh-hhHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL-GGVSGIVI 386 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~ 386 (514)
...+...+ ..........|.|.+.++.|. +..+.+.......++.+++.++.|+++||++||+... .+.....+
T Consensus 226 ~~~~~~~~----~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 226 LGGMVRII----NTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGI 300 (402)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 43333222 222334566788888888887 7777888888899999999999999999999888653 22333333
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh
Q 010239 387 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 466 (514)
+...+........++.+.......+.+.+.. ...+.. ....|..| ++|++++|+.+...++++.++|.+.|.+.+..
T Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 301 FTLALYYIPQHFGHSFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3222221111111222333333333332222 233333 45567655 68999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHhCC
Q 010239 467 GAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 467 g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
|+...+++.+++.+++.++..+
T Consensus 378 g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 378 GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 9988999888887777666544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=260.20 Aligned_cols=368 Identities=15% Similarity=0.122 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010239 52 LPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA 131 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 131 (514)
..+..+.+..+..+++....++.+|.++++ +|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~ 98 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 344555566677788888899999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 132 LLYLVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 132 ~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
++++++++++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+..
T Consensus 99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~ 178 (438)
T PRK10133 99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886 4688999999999999999999999999999998877777778999999999999999999876541
Q ss_pred -c-----------------c-------cchhHHHHhhHHHHH-HHHHH-hhcccCchhHHHHhhccccCCccccHHHHHH
Q 010239 209 -L-----------------V-------AGWRYMYGASTPLAV-IMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAIS 261 (514)
Q Consensus 209 -~-----------------~-------~~wr~~f~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (514)
. . .+||++|+....+.. +..+. ...+||.+.. +. .
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~----~----------- 240 (438)
T PRK10133 179 SNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH----S----------- 240 (438)
T ss_pred cCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cc----c-----------
Confidence 0 0 156667764443333 32222 2224442210 00 0
Q ss_pred HHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHH-cC
Q 010239 262 CLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQS-AG 339 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 339 (514)
+.+..+...+.+++++++.++...+..++..... .....|.+.+ .++ .|
T Consensus 241 -------------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~g 291 (438)
T PRK10133 241 -------------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPG 291 (438)
T ss_pred -------------------------cccccchhhhHHHHHhCchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCC
Confidence 0000011123456777776655444333333222 2233455545 444 56
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcc
Q 010239 340 FSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLS 419 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (514)
. ++..++.......++.++++++.+++.||+++|+++..+..+..+.+.+... . . .. ..+..+.+.+.+.+.
T Consensus 292 ~-s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~-~-~~-~~~~~~~l~glg~~~- 363 (438)
T PRK10133 292 M-TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A-G-GH-VGLIALTLCSAFMSI- 363 (438)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c-C-Ch-HHHHHHHHHHHHHHH-
Confidence 6 8889999999999999999999999999999999888776666554443322 1 1 11 223333334333333
Q ss_pred cccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHH
Q 010239 420 FGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSL 483 (514)
Q Consensus 420 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 483 (514)
..|..++...+..|+ ..+++.++..+ ..+|+.++|.+.|.+.|..| .+..|++...+.+...
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 446667888888884 47788888864 55788999999999999887 5666665444444333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=254.03 Aligned_cols=345 Identities=32% Similarity=0.405 Sum_probs=285.8
Q ss_pred HHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010239 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLV 136 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 136 (514)
..+..+....+.....+..|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~ 76 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence 3455566777788888888998888 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHH
Q 010239 137 GALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM 216 (514)
Q Consensus 137 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 216 (514)
+.+++.+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+.. +||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 155 (352)
T cd06174 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWL 155 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 89999
Q ss_pred HHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccch
Q 010239 217 YGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVS 296 (514)
Q Consensus 217 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (514)
|++.+++.++..+...+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 174 (352)
T cd06174 156 FLILAILGLLLALLLLFLL------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999888777655544321
Q ss_pred hHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCch
Q 010239 297 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 375 (514)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 375 (514)
+..+... +..+...........+.|.+.++. +. +..+.+.......++.+++.++.+++.||++||+
T Consensus 175 -------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 175 -------RLLLLLA----LAFFLLSFGYYGLLTYLPLYLQEVLGL-SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred -------HHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111112 222222333446667777777775 65 7888999999999999999999999999999999
Q ss_pred -hhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHH
Q 010239 376 -LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 454 (514)
Q Consensus 376 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 454 (514)
.+..+..+..++.+.+... ++.+.......+. +.......+....+..|..|+++|++.+|+.+....++..+
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (352)
T cd06174 243 LLLLIGLLLAALGLLLLALA-----PSLALLLVALLLL-GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL 316 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHH-HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766542 2233333333333 33434445666789999999999999999999999999999
Q ss_pred HHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 455 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 455 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++.+.|.+.+..+++..+.+.+++.+++.++.+.
T Consensus 317 ~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 317 GPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999899999999988888887766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=255.31 Aligned_cols=344 Identities=18% Similarity=0.207 Sum_probs=244.5
Q ss_pred cccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 010239 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA 144 (514)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 144 (514)
........+.+|.+.++ +|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++.++
T Consensus 16 ~~~~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 16 PAGIDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444555789999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHH
Q 010239 145 PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLA 224 (514)
Q Consensus 145 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~ 224 (514)
++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.++++
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~ 167 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMG 167 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888776 9999999998887
Q ss_pred HHHHHH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhh
Q 010239 225 VIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303 (514)
Q Consensus 225 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (514)
++..+. .+++||+++.. + + + +.......++.+++
T Consensus 168 ~i~~~~~~~~~~~~~~~~---~---~-~--------------------------------------~~~~~~~~~~~~~~ 202 (392)
T PRK10473 168 ILVLLLSLFILKETRPAR---A---P-A--------------------------------------ASSKPRENSESLLN 202 (392)
T ss_pred HHHHHHHHHHcCCCCCcc---c---C-C--------------------------------------ccchHHHHHHHHhC
Confidence 775443 44566653200 0 0 0 00001122334455
Q ss_pred chhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHH
Q 010239 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 382 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 382 (514)
+.++...+...+..... ..+..+.|.++ ++.|. +..+.+.......++.+++.++.+++.||+++|+.+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~ 277 (392)
T PRK10473 203 RFFLSRLVITTLSVTVI----LTFVNTSPVLLMEQMGF-SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV 277 (392)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHhCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44333332222222111 12233445444 45676 67778888889999999999999999999999999888877
Q ss_pred HHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 383 GIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
+..++.+++... ...+.......+...+...+.. . ....+..|.+.++ |.......++..+++.+.+.+
T Consensus 278 ~~~~~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l 346 (392)
T PRK10473 278 LFLAAGITLALS-----PSHAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWL 346 (392)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHH
Confidence 777666655432 1222222222222223322221 1 2334444544343 444455567777888888888
Q ss_pred HHhhCcchhhHHHHH
Q 010239 463 KDLLGAGILFYAFGV 477 (514)
Q Consensus 463 ~~~~g~~~~~~~~~~ 477 (514)
.+..|+.......+.
T Consensus 347 ~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 347 AAVLGISAWNMLIGI 361 (392)
T ss_pred HHHhccchhHHHHHH
Confidence 888887654444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=258.10 Aligned_cols=345 Identities=25% Similarity=0.347 Sum_probs=256.6
Q ss_pred HHHHhhcccccccccccc-cccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010239 59 LGGLLYGYDIGSTSCATI-SIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVG 137 (514)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 137 (514)
++.+...++.....+.+| .+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence 445566666777788888 78888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHH
Q 010239 138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY 217 (514)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 217 (514)
.++..+++|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.+.. +||+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~ 154 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAF 154 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHH
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-cccccc
Confidence 7777777888899999999999999999999999999999999999999999999999999999999999777 999999
Q ss_pred HhhHHHHHHHHHH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccc-
Q 010239 218 GASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV- 295 (514)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (514)
++.+++.++..++ .++++++++....++ +. +.+ .+.+++..
T Consensus 155 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~-----~~-----------------------~~~---------~~~~~~~~~ 197 (352)
T PF07690_consen 155 LISAILSLIAAILFILFLPEPPPPRERES-----PK-----------------------ESE---------SKKPKPLKP 197 (352)
T ss_dssp HHHHHHHHHHHHHHHCCC---STTTT--S-----ST-----------------------TTT-----------HHHCCCH
T ss_pred ccccchhhhhhhhHhhhhhhccccccccc-----cc-----------------------ccc---------ccccccccc
Confidence 9999999886554 344554433110000 00 000 00111111
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHHcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 296 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSAGFSA-ASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
.++.+++++..+..++......+. ......+.|.+ .+..+. + ..+.+.......+..+++.++.+++.||+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 272 (352)
T PF07690_consen 198 GFKSLFKNPVLWILLIAFFLFFFV----FSGFSFFLPLYLQEVLGF-SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGR 272 (352)
T ss_dssp -CTHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccccchhhhhhhhhhHHHHH----HHHhhcccchhhhhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 255666666554233322222222 23466777776 566777 6 5788888999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+..........+..+.+..... .++.........+.+. ......+....+..|..|++++|++.|+.+...++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 349 (352)
T PF07690_consen 273 RRRLLIAILLLILGALGLLLLPF--SSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI 349 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHH--HCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 88777766666665555443211 1222333333333333 33333566678999999999999999999999999999
Q ss_pred HHH
Q 010239 454 LVT 456 (514)
Q Consensus 454 ~~~ 456 (514)
++|
T Consensus 350 igP 352 (352)
T PF07690_consen 350 IGP 352 (352)
T ss_dssp HHH
T ss_pred HCC
Confidence 887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=260.01 Aligned_cols=371 Identities=15% Similarity=0.093 Sum_probs=261.8
Q ss_pred HHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHH
Q 010239 61 GLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLY 134 (514)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~ 134 (514)
++..+......++.+|...++ .|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 355566666778888888877 79999999986 4444444 6899999999999 99885 66777777
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc
Q 010239 135 LVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA 211 (514)
Q Consensus 135 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 211 (514)
+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+...
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7887777775 4788999999999999999999999999999999999999999999999999999999999988323
Q ss_pred chhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccc
Q 010239 212 GWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGE 291 (514)
Q Consensus 212 ~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (514)
|||..|++.+++.++..+..+++||+++.. + ++ + .. ++
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~--~~-----~----------------------~~----------~~ 209 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLLAPEPTDTI---P--VP-----K----------------------TL----------EQ 209 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc---c--cc-----c----------------------ch----------hh
Confidence 999999999988777666555677754310 0 00 0 00 00
Q ss_pred cccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHHcCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHh
Q 010239 292 DKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSAGFSAASDATRVS-ILLGLFKLIMTGLAVLVVE 369 (514)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d 369 (514)
....++++.++++..+...+...+.... ......+.+.+ .++.|+ +..+.+... ....++.+++.++.|+++|
T Consensus 210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~----~~~~~~~~~~~l~~~~G~-s~~~~g~~~~~~g~i~~iiG~ll~G~L~d 284 (491)
T PRK11010 210 AVVAPLRDFFGRNNAWLILLLIVLYKLG----DAFAMSLTTTFLIRGVGF-DAGEVGLVNKTLGLLATIVGALYGGILMQ 284 (491)
T ss_pred hHHHHHHHHHcCcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012345566555444333332222221 11223344444 456777 778888887 4666899999999999999
Q ss_pred HhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHH
Q 010239 370 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNF 449 (514)
Q Consensus 370 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 449 (514)
|+++|+.+..+..+.++..+.+..... ..++.+.......+.....+.+. +..+++..+..+++.+++..|+.+....
T Consensus 285 r~g~~~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~ 362 (491)
T PRK11010 285 RLSLFRALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSA 362 (491)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999988777655554544433222111 11222222222222222222222 2335777888898899999999999999
Q ss_pred HHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 450 GANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 450 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+|+.+++.+.|.+.|..||...|.+.+++++++.+.....
T Consensus 363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888888877666554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=243.25 Aligned_cols=362 Identities=19% Similarity=0.194 Sum_probs=286.7
Q ss_pred ccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 010239 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (514)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
-...+++.+.+.+| +++|+.|.+++.++..+...+.-++.|.+.||||.|++..++.++..+-++..+++.+.
T Consensus 30 W~l~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~ 102 (417)
T COG2223 30 WTLFSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY 102 (417)
T ss_pred HHHHHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC
Confidence 34566777777777 99999999999999999999999999999999999999999999999999999998655
Q ss_pred H---HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccc---hhHHHHhhH
Q 010239 148 I---IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG---WRYMYGAST 221 (514)
Q Consensus 148 ~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~---wr~~f~~~~ 221 (514)
+ ++++.+.+.|++.+ .+......+++|+||+++|.++|+.. ..++|..+...++..+.... + ||....+..
T Consensus 103 ~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~ 179 (417)
T COG2223 103 PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYV 179 (417)
T ss_pred CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 4 99999999999866 88888999999999999999999999 89999999999999988877 6 999999998
Q ss_pred HHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcccccc-chhHH
Q 010239 222 PLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE-VSLRE 299 (514)
Q Consensus 222 ~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 299 (514)
+..++..+..+ .+.|.|+.... .++.. .+.+.
T Consensus 180 ~~l~v~~v~~~~~~~d~p~~r~~----------------------------------------------~~~~~~~~~~~ 213 (417)
T COG2223 180 VALAIAAVLAWLGMNDVPEHRAS----------------------------------------------VKPQLPAQLKA 213 (417)
T ss_pred HHHHHHHHHHHHHhCCChhhhcc----------------------------------------------ccccchhHHHH
Confidence 88888555444 46665542100 01111 34566
Q ss_pred HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhh
Q 010239 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG 379 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 379 (514)
++++++.|.+. +.++..+.++..+..++|.++++....+..+++.......+.+.+.++++|+++||+|.+|++..
T Consensus 214 v~~~~~~W~ls----llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 214 VFSNKDTWLLS----LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred HhcCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 77677655554 44444555666888888888765443388899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccC--CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 380 GVSGIVISLFLLGSYYLFLD--DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 457 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 457 (514)
.+..++++..++........ .+.+..+........+.+.+. ...+.++...+| ++.|.+.|+...++.+|++.-|.
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCc-chheeechHHHH-hhhhHHHHHHHHhccccccchhH
Confidence 88888888877765321111 223333333334444444444 345688888998 57999999999999999999999
Q ss_pred hchHhHHhhC-cchhhHHHHHHHHHHHHHhCCCCC
Q 010239 458 AFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 458 ~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
..|...+..| +...|+++..+.+++.+..+..+.
T Consensus 368 ~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 368 AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 777888888888888877665443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=257.28 Aligned_cols=363 Identities=21% Similarity=0.241 Sum_probs=246.3
Q ss_pred hcccccccccccccccCCCCCCCccccCCchhhHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010239 64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSG-----SLYGALIGSILAFNIADILGRRRELILAALLYLVGA 138 (514)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 138 (514)
+.++...+++..+.+.++.. .+.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFF-----PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT 79 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555555421 12445555554443 334445789999999999999999999999999999
Q ss_pred HHHHhhhhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc--
Q 010239 139 LVTALAPDFI--------IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-- 208 (514)
Q Consensus 139 ~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-- 208 (514)
++++++++++ .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.++++.++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~ 159 (394)
T TIGR00883 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL 159 (394)
T ss_pred HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998875 588999999999999999999999999999999999999999999999999988776532
Q ss_pred ------cccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHH
Q 010239 209 ------LVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEI 282 (514)
Q Consensus 209 ------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
.. +||+.|++.+++.++........||++++..+++
T Consensus 160 ~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 201 (394)
T TIGR00883 160 GDDALLEW-GWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------------- 201 (394)
T ss_pred CHHHhhcc-chHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------------------------
Confidence 33 8999999888777665555555677654211100
Q ss_pred HHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHH
Q 010239 283 LTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMT 361 (514)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
++++.+.+.++.++++.. ........ .+...........+.|.+. ++.+. +..+.+.......+..+++.
T Consensus 202 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 272 (394)
T TIGR00883 202 ------KHKKKRGPIRETLTKHRK-PFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGL-SANSALLVLMLSLILFFITI 272 (394)
T ss_pred ------ccccccCCHHHHHHhchH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 011112234455554431 12222222 2222223345556777777 44566 77788888999999999999
Q ss_pred HHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHH
Q 010239 362 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGL 441 (514)
Q Consensus 362 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 441 (514)
++.+++.||++||+.+.....+..+....+..... ...+.+.......+.+.+... ..+...++..|.+|++.|+++.
T Consensus 273 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~ 350 (394)
T TIGR00883 273 PLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DSGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGA 350 (394)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEe
Confidence 99999999999999776554443332211111111 122333333333333333333 3345568899999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHH
Q 010239 442 SVAV-LVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAV 480 (514)
Q Consensus 442 g~~~-~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~ 480 (514)
++.+ ....+|..++|.+.|.+.++.| +...++...++++
T Consensus 351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 9854 4466788899999999999988 6655555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=255.79 Aligned_cols=367 Identities=13% Similarity=0.074 Sum_probs=253.9
Q ss_pred HHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 010239 60 GGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139 (514)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 139 (514)
+.++..++........+.+.++ ++.++.+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 11 AQFFSALADNALLFAAIALLKE-------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence 3344444333333444445566 788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHh
Q 010239 140 VTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA 219 (514)
Q Consensus 140 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 219 (514)
.++++++. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+
T Consensus 84 ~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i 158 (393)
T PRK11195 84 LMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAV 158 (393)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 88887764 78899999999999999999999999999999999999999999999999999999885 48888877
Q ss_pred hHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHH
Q 010239 220 STPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299 (514)
Q Consensus 220 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
.+...++..+..+.+||+++.. + +++.+ .. ....+. ....+.
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~----~~-------------------~~~~~~-----------~~~~~~ 200 (393)
T PRK11195 159 CALIYLLAALFNLFIPRLGARR---P-GQSWN----PI-------------------ALLRDF-----------FHACRV 200 (393)
T ss_pred HHHHHHHHHHHHhcCCCCcccc---c-ccCCC----HH-------------------HHHHHH-----------HHHHHH
Confidence 7666555555556678765310 0 00000 00 000000 012345
Q ss_pred HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhh
Q 010239 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL 378 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 378 (514)
+++++..+...+...+..... ....+..+.+.++ .+. ++.+.+.......++.++++++.+++.||.++++.+.
T Consensus 201 l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lg~-s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~ 275 (393)
T PRK11195 201 LWRDKLGRFSLAGTTLFWGAG----ATLRFLVLAWAPVALGI-TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLP 275 (393)
T ss_pred HHhCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 566665554443332222221 1223333444443 455 7888999999999999999999999999988888776
Q ss_pred hhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhh-hhhHHHHHHHHHHHHHHHHHH
Q 010239 379 GGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL-RGRGLSVAVLVNFGANALVTF 457 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~ 457 (514)
.+.. .++...++.. .++.+.......+.+.+.+... +...+..++..|++. +|++.++.+...+++..++..
T Consensus 276 ~g~~-~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 276 AGIL-MGLVVLLMAL-----QHSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred HHHH-HHHHHHHHHH-----HhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHH
Confidence 6643 3333222221 1233333333333333333333 333466777766554 799999999999999999999
Q ss_pred hchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 458 AFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 458 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+.+.+ +..|.+..+.+.+...+++..+.+.+
T Consensus 349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 349 LYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 98855 67888877777666666655555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=251.15 Aligned_cols=359 Identities=16% Similarity=0.131 Sum_probs=262.6
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010239 54 FLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL 133 (514)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 133 (514)
+.++++..+..++..+..++.+|.++++ +|++..+.|++.+.+++++.+++++.|++.||+|||++++.+.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l 77 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3455566778888888999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc-
Q 010239 134 YLVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL- 209 (514)
Q Consensus 134 ~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~- 209 (514)
++++.+++.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+++.+++.+...
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 157 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988654 368999999999999999999999999999999999999999999999999999999998877532
Q ss_pred ------------------------ccchhHHHHhhHHHHHHHHHHhhc--ccCchhHHHHhhccccCCccccHHHHHHHH
Q 010239 210 ------------------------VAGWRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISCL 263 (514)
Q Consensus 210 ------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (514)
..+||++|++.+++.++..+...+ .||.++ + +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~-----------~------ 215 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S-----------D------ 215 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c-----------c------
Confidence 126999999988877765444433 333111 0 0
Q ss_pred HHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCC-CC
Q 010239 264 CRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF-SA 342 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 342 (514)
+ ++.....+.++++|++..+...+..+++..... ....+.+.+.++.+. .+
T Consensus 216 ---------------------~---~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~~~~ 267 (410)
T TIGR00885 216 ---------------------A---KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIPGMT 267 (410)
T ss_pred ---------------------c---ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCC
Confidence 0 000011133456666665554444444433332 334566666665432 13
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhccccc
Q 010239 343 ASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGP 422 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (514)
...+............+|+++++++.||+++|+.+.+...+..++.++... .+ .......+.+.+.+.+..+ |
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-----~~-~~~~~~~l~~~glf~s~~f-p 340 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-----AG-GHVGLYCLTLCSAFMSLMF-P 340 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-----cC-ChHHHHHHHHHHHHHHHHH-H
Confidence 334455666667888999999999999999999887777766666555543 11 2233444444555555544 7
Q ss_pred ccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh------CcchhhHHHHHH
Q 010239 423 IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL------GAGILFYAFGVI 478 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~ 478 (514)
..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|.. +++..|++...+
T Consensus 341 ~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 341 TIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 7788889999876554455555543 99999999999999964 365666654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=251.28 Aligned_cols=351 Identities=16% Similarity=0.128 Sum_probs=252.0
Q ss_pred ccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 010239 69 GSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (514)
Q Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
....|.++. ++++ +|.+..++|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.+++++
T Consensus 27 ~~~~~~~~~~~~~~-------~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~ 99 (400)
T PRK11646 27 FVVFPLISIRFVDQ-------LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEP 99 (400)
T ss_pred HHHHHHHHHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccH
Confidence 333444443 4556 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH
Q 010239 148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM 227 (514)
Q Consensus 148 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 227 (514)
+.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. .. +||+.|++.++..++.
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999999999999999999999998 44 9999999988877664
Q ss_pred HHH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchh
Q 010239 228 GMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 306 (514)
Q Consensus 228 ~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (514)
.+. .++.||.++ + + . .++.+.++++.++++.+
T Consensus 178 ~i~~~~~~~~~~~-----~---~-----~----------------------------------~~~~~~~~~~~~~~~~~ 210 (400)
T PRK11646 178 AAFNAWLLPAYKL-----S---T-----V----------------------------------RTPVREGMTRVLRDKRF 210 (400)
T ss_pred HHHHHHhCCcccc-----c---c-----c----------------------------------chhhHHHHHHHHcCchH
Confidence 433 334554211 0 0 0 00011134556666554
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh-HhCCchhhhhhHHHHH
Q 010239 307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE-RLGRRPLLLGGVSGIV 385 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~~~~ 385 (514)
....+.....+.. ......+.|.+.++.+. ++.+.+.......+....+....++..| |.+.++.+..+..+.+
T Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 285 (400)
T PRK11646 211 VTYVLTLTGYYML----AVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMS 285 (400)
T ss_pred HHHHHHHHHHHHH----HHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4333222221111 11234567888888776 6677888877777776666555566655 4565666666666666
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh
Q 010239 386 ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 465 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 465 (514)
++..+++. .++.+.......++..+.. ...|...+++.+..|++++|+++|+.+....+|..++|.+.|.+.|.
T Consensus 286 ~~~~~l~~-----~~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 286 LSMFPIGM-----VSNLQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHH-----hhhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 66555443 1223333332233333322 23345557888999999999999999999999999999999999987
Q ss_pred hC----cchhhHHHHHHHHHHHHHh
Q 010239 466 LG----AGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 466 ~g----~~~~~~~~~~~~~~~~~~~ 486 (514)
.+ ....++..+.+++++.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHHH
Confidence 53 2345555555555555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=252.13 Aligned_cols=389 Identities=17% Similarity=0.140 Sum_probs=260.5
Q ss_pred CccchhHHHHHHHHHHHHHHhhcccccccc-cccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010239 43 ENYSVSAAILPFLFPALGGLLYGYDIGSTS-CATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~ 121 (514)
++..+|..+.++..+++.++....+...++ +.+..+.+| .+....+.+.+.++++++++++.+++|.+.||+
T Consensus 36 ~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed-------l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~ 108 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED-------LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF 108 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc-------cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC
Confidence 334455566666777777777777755443 344445566 789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHH
Q 010239 122 GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG 201 (514)
Q Consensus 122 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 201 (514)
+..+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|.+
T Consensus 109 ~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggl 188 (495)
T KOG2533|consen 109 PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGL 188 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcc-----cccchhHHHHhhHHHHHHHH-HHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCC
Q 010239 202 IGSLLVD-----LVAGWRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSA 275 (514)
Q Consensus 202 ~~~~l~~-----~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (514)
++..+.+ ...||||.|++.++++++.. ++.+++|+.|... +-...+|.+-..++.+..+..+
T Consensus 189 iA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~----------~fl~~~ek~~~~~~~~~~~~~~-- 256 (495)
T KOG2533|consen 189 IAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA----------WFLTDEEKELVVERLRESPSGG-- 256 (495)
T ss_pred HHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhc----------cccchHHHHHHHHHHHhccCCC--
Confidence 9998632 22399999999999999865 4555689988611 0001111111111111111000
Q ss_pred chhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCchhHHHHHHHH
Q 010239 276 PTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASDATRVSILLG 354 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 354 (514)
..++.+...+++.++++..+...+.. ++.....+.+.+|+|.++.+. ++ +..++..+.++..
T Consensus 257 ------------~~~~~~~~~~~~a~~dp~vw~~~l~~----~~~~lv~~~~~~~lpl~l~~~~~~-s~~~a~~ls~~~~ 319 (495)
T KOG2533|consen 257 ------------IENKFKWKGFKEALKDPGVWPFSLCY----FFLKLVNYGFSYWLPLYLKSNGGY-SELQANLLSTPYD 319 (495)
T ss_pred ------------cccccCHHHHHHHHhchhHHHHHHHH----HHHhhccccHHHHHHHHHHcCCCc-ChHHhccccchHH
Confidence 00113445677777877666554433 333344557889999999883 35 8899999999999
Q ss_pred HHHHHHHHHHHHHHhHh----CCchhhhhhHHHHHHHH-HHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec
Q 010239 355 LFKLIMTGLAVLVVERL----GRRPLLLGGVSGIVISL-FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS 429 (514)
Q Consensus 355 ~~~~~~~~~~g~l~d~~----g~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (514)
++++++.+++|+++||. .+|........+..+.. +.+.. ........ ..++.+........+......+
T Consensus 320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~s 393 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA-----AAVLPGAY-GAFLIGPYGLIATAIIALSWTS 393 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hccchHHh-HHHHhcchhhHHHHHHHHhhcc
Confidence 99999999999999994 44544444433333322 22211 11122111 1111111111122233334555
Q ss_pred cccchhhh-hhHHHHHHHHHHHHHHHHHHhchH-hHHhhCcchhhH
Q 010239 430 EVFPLRLR-GRGLSVAVLVNFGANALVTFAFSP-LKDLLGAGILFY 473 (514)
Q Consensus 430 ~~~p~~~~-~~~~g~~~~~~~~g~~~~~~~~g~-l~~~~g~~~~~~ 473 (514)
+....+.+ -+..+........++.+.|.+.-. ....+++...|.
T Consensus 394 ~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~ 439 (495)
T KOG2533|consen 394 ANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFY 439 (495)
T ss_pred ccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHH
Confidence 55444433 334444444445555555544433 333356666773
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=250.07 Aligned_cols=360 Identities=15% Similarity=0.147 Sum_probs=257.3
Q ss_pred Hhhcccccccccccc-cccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATI-SIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (514)
++.........+.+| .++++ +|++..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQ-------YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 333444445555554 44556 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhh
Q 010239 141 TALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAS 220 (514)
Q Consensus 141 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 220 (514)
.+++++++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|..++|++++.+.+ . +|+..|++.
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~ 167 (395)
T PRK10054 90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLA 167 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHH
Confidence 99999999999999999988888888899999999999999999999999999999999999999875 4 899999988
Q ss_pred HHHHHHHHHHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHH
Q 010239 221 TPLAVIMGMGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE 299 (514)
Q Consensus 221 ~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
+++.++..+.. +++||+++.. + + ++++..+.++
T Consensus 168 ~~~~~i~~i~~~~~~~~~~~~~---~-----------~--------------------------------~~~~~~~~~~ 201 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRSEKAI---A-----------T--------------------------------ETGSVWSPSV 201 (395)
T ss_pred HHHHHHHHHHHHHHHhcccccc---c-----------c--------------------------------chhhhhhhhh
Confidence 88777654433 3455542200 0 0 0000011245
Q ss_pred HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH---HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchh
Q 010239 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL---QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 376 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 376 (514)
.++++.++...+...+...... ....+.+.+. .+.+. +....+.......+..+...+..+++.||.++|+.
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 276 (395)
T PRK10054 202 LLQDKALLWFTCSGFLASFVSG----AFASCISQYVMVVADSDF-AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL 276 (395)
T ss_pred hccCceehHHHHHHHHHHHHHH----HhhhhHHHHHHHhcccch-HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence 5666665554443333222211 1222333333 22333 34455667777777777777888999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q 010239 377 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 456 (514)
+..+..+..++...+... .++.+.......++..+. ....|.....+.+..|++.++++.+..+ ...+|..+||
T Consensus 277 l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp 350 (395)
T PRK10054 277 MTAGTLCFVIGLVGFIFS----GNSLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINP 350 (395)
T ss_pred HHHHHHHHHHHHHHHHHc----chHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHH
Confidence 888877666666554321 123332333333333332 3334555577889999999999998765 5678999999
Q ss_pred HhchHhHHhhCcchhhHHHHHHHHHHHHHhC
Q 010239 457 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 457 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
.+.|.+.|+.|+...|++.+.+..++.++..
T Consensus 351 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 351 LVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777666666555544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=247.79 Aligned_cols=333 Identities=19% Similarity=0.240 Sum_probs=239.0
Q ss_pred ccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 010239 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF 147 (514)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
.....|.+|.+.++ +|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.+++++
T Consensus 7 ~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 7 IDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI 79 (377)
T ss_pred HHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 34567888999888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH
Q 010239 148 IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM 227 (514)
Q Consensus 148 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 227 (514)
+.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+.. +||+.|++.++++++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 9999999988887775
Q ss_pred HH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchh
Q 010239 228 GM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCL 306 (514)
Q Consensus 228 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (514)
.+ ..+++||+++.. + +. +.+ .++...++++.++++..
T Consensus 159 ~~~~~~~~~~~~~~~---~---~~-------------------------~~~-----------~~~~~~~~~~~~~~~~~ 196 (377)
T PRK11102 159 AALVFFFIPETLPKE---R---RQ-------------------------PFH-----------LRTTIRNFASLFRHKRV 196 (377)
T ss_pred HHHHHHhCCccCccc---c---cC-------------------------CCC-----------hHHHHHHHHHHHcChHH
Confidence 44 445567653200 0 00 000 00001133455555544
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHH
Q 010239 307 KALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIV 385 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 385 (514)
+...+...+ .+.+......+.|.++ +..+. +..+.+.......++.+++.++.+++.||+++|+.+..+..+..
T Consensus 197 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 197 LGYMLASGF----SFAGMFSFLTAGPFVYIELNGV-SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHHHHHHH----HHHHHHHHHHcCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 333322222 1222223334445444 44676 78889999999999999999999999999999998887776544
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHH-HHHHHHHHh
Q 010239 386 ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNF-GANALVTFA 458 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 458 (514)
+..+.+...... ....+.......++.+..... .+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 272 IMGIWLVVSALL-DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 433322221111 112232232332333332222 2233355677777 789999999887654 445555544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-30 Score=244.91 Aligned_cols=357 Identities=15% Similarity=0.102 Sum_probs=235.9
Q ss_pred Hhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLY-GALIGSILAFNIADILGRRREL-ILAALLYLVGA 138 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~ 138 (514)
++.+.......|.+|. +.++ +|.+.+++|++.+...+ ++.++.++.++ +||+||||.+ ..+.++.+++.
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDE-------VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 3334444445565555 4556 89999999999876655 55566655555 9999999875 55666667888
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcc--hhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHH
Q 010239 139 LVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR--GQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYM 216 (514)
Q Consensus 139 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 216 (514)
.+.+++++++.+++.+.+.|...+...|...+++.++.++++| +...++.+.+.++|.++||++++.+.+.. |||..
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~ 175 (393)
T PRK15011 97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVM 175 (393)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHH
Confidence 8888999999887666555544556788888889998876655 34557888999999999999999999887 99999
Q ss_pred HHhhHHHHHHHHHH-hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccc
Q 010239 217 YGASTPLAVIMGMG-MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 295 (514)
Q Consensus 217 f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (514)
|++.++.+++..+. .+++||.++.. + +. .. +.+.
T Consensus 176 f~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~-------------------------~~-----------~~~~--- 210 (393)
T PRK15011 176 YLSAAVAFIVCGVMVWLFLPSMRKEL---P---LA-------------------------TG-----------TLEA--- 210 (393)
T ss_pred HHHHHHHHHHHHHHHHhhcCccCCCC---c---cc-------------------------cc-----------cccc---
Confidence 99998887775444 44577764300 0 00 00 0000
Q ss_pred hhHHHhhhc-hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 296 SLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
. .+++ ............. .....+..+.|.+++ +.+. +..+.+.......+..+++.++.|+++||++|
T Consensus 211 -~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~~~-~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~ 281 (393)
T PRK15011 211 -P---RRNRRDTLLLFVICTLMW----GTNSLYIINMPLFIINELHL-PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGK 281 (393)
T ss_pred -c---ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 0 0011 1111111111111 122234456776664 4566 66778888777778888999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
|+.+..+.....+....+.. .++.+..+....+.....+... +....+..|..|+ .+++++++.+...++|..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~ 354 (393)
T PRK15011 282 RFLMRVAAVAGVCFYAGMLM-----AHSPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWI 354 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHH
Confidence 98777665544443332211 1223332222222222222211 2223566888885 599999999999999999
Q ss_pred HHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 454 LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++|.+.|.+.+..||+..+.+.+++.+++.+..+.
T Consensus 355 ~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 355 IAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988888877777776666554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-30 Score=244.47 Aligned_cols=359 Identities=14% Similarity=0.066 Sum_probs=265.7
Q ss_pred HHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHH
Q 010239 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL----ILAALLY 134 (514)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~ 134 (514)
+.++.+....+...|.+|.+.++ +|+|..++|++.+++.+...++++++|+++||+||++.. ..+..+.
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44555556667888999999988 999999999999999999999999999999999985433 3332222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
.+ ..+..+++++.+++.|+++|.+.+...|...++..++ +++|++.++....+.++|.+++|++++.+.+.. |||
T Consensus 84 ~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~ 158 (382)
T TIGR00902 84 AA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQ 158 (382)
T ss_pred HH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-Chh
Confidence 22 2445678999999999999999988899998888765 477899999999999999999999999999987 999
Q ss_pred HHHHhhHHHHHHHHHHhhcccCch-hHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGMGMWWLPASP-RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
..|++.++..++..+ .+.++|++ +. + + + + +++.++
T Consensus 159 ~~f~~~~~~~~~~~~-~~~~~~~~~~~----~---~-~-----~------------------------------~~~~~~ 194 (382)
T TIGR00902 159 NILAILTAGLAFMLI-GFLIKPTIPPK----D---A-I-----P------------------------------EDESQG 194 (382)
T ss_pred HHHHHHHHHHHHHHH-HHHcCCCCCCC----c---c-c-----c------------------------------cccccc
Confidence 999887655333333 23333332 10 0 0 0 0 000111
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR 373 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 373 (514)
..+.++++|++.++...+...+.... ......+.|.++++.|. +....+.......++.+++.++.+++.||++.
T Consensus 195 ~~~~~~~l~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~ 269 (382)
T TIGR00902 195 DSAFIALLKNPMNLRFLAAVCLIQGA----HAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSA 269 (382)
T ss_pred chhHHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH
Confidence 22456777877666555444333322 33455577777788888 88889999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHH-HHHHHH
Q 010239 374 RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL-VNFGAN 452 (514)
Q Consensus 374 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~ 452 (514)
|+.+..+.++..+...++.. .++.+..+....+.+..++... +....++.+. |++.++++.++.+. ...+|.
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~ 342 (382)
T TIGR00902 270 RDLLLISAIACVGRWAIIGA-----IEAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI 342 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH
Confidence 99999988888888776653 2344544444445554444444 3445778887 88899999999875 467899
Q ss_pred HHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 453 ALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 453 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
.+++.+.|.+.|+.|+ ..|+..+++.+++.++.
T Consensus 343 ~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 343 AIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999986 57777787777665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=244.55 Aligned_cols=337 Identities=15% Similarity=0.116 Sum_probs=243.3
Q ss_pred ccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 010239 66 YDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP 145 (514)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 145 (514)
+......|.+|.+.++ +|.|+.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++.+++
T Consensus 22 ~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T PRK11652 22 MAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH 94 (394)
T ss_pred HHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 4555667888999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHH
Q 010239 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225 (514)
Q Consensus 146 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 225 (514)
+++.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+.. +||+.|++.++..+
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~ 173 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGA 173 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHH
Confidence 99999999999999999888888899999999999999999999999999999999999998876 99999999888776
Q ss_pred HHH-HHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhc
Q 010239 226 IMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 304 (514)
Q Consensus 226 ~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (514)
+.. +..++.||+++.. + + +++.+..+++.++++
T Consensus 174 ~~~~~~~~~~~~~~~~~---~---------~----------------------------------~~~~~~~~~~~~~~~ 207 (394)
T PRK11652 174 GVTFSMARWMPETRPAD---A---------R----------------------------------RTRVLASYRTLLSNR 207 (394)
T ss_pred HHHHHHHHhCCccCccc---c---------c----------------------------------hhHHHHHHHHHHcCh
Confidence 643 3444567754310 0 0 000112344556665
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHH
Q 010239 305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSG 383 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 383 (514)
..+...+....... +...+..+.+.++++ .+. +....++......++.+++.++.+++.||.+++... ....
T Consensus 208 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~ 280 (394)
T PRK11652 208 RFNCYLLMLIGTLA----GIAVFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVIC 280 (394)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhChHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 55443332222211 122333444555555 566 777788888888888889999999999998833222 2222
Q ss_pred HHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 384 IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
..++.+.+...........+.......+...+.+. ..|....+..|..| +.++++.++.+....+|+.+++.+.+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 281 CLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22222222111111112233333333333333333 34555577788887 67899999999999999999999888776
Q ss_pred Hh
Q 010239 464 DL 465 (514)
Q Consensus 464 ~~ 465 (514)
+.
T Consensus 359 ~~ 360 (394)
T PRK11652 359 QT 360 (394)
T ss_pred CC
Confidence 54
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=240.30 Aligned_cols=333 Identities=18% Similarity=0.136 Sum_probs=243.6
Q ss_pred cccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 010239 67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146 (514)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 146 (514)
.....++.+|.+.++ +|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus 15 ~~~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~ 86 (355)
T TIGR00896 15 ALTSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG 86 (355)
T ss_pred ccccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence 345678999999999 99999999999999999999999999999999999999999999998888887 7889
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc-chhHHHHhhHHHHH
Q 010239 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAV 225 (514)
Q Consensus 147 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~ 225 (514)
++.+++.|++.|++.+...+....++.|+++ ++|++++++.+.+.++|..+++.+++.+.+... +||+.|.+.+++.+
T Consensus 87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999988888889999996 689999999999999999999999998876542 49999987776544
Q ss_pred HHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhch
Q 010239 226 IMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKC 305 (514)
Q Consensus 226 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (514)
+... .++|+.++. + ++ +++..+...++.+|++.
T Consensus 166 ~~~~--~~~~~~~~~----~--~~---------------------------------------~~~~~~~~~~~~~~~~~ 198 (355)
T TIGR00896 166 LALL--AWIPQVRRR----V--AA---------------------------------------NQTTTRLTPVRIWRSPL 198 (355)
T ss_pred HHHH--HHhhhhccc----c--CC---------------------------------------CCCCCCCCCchhhcCHh
Confidence 4322 233433210 0 00 00001112345566655
Q ss_pred hhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC-CchhhhhhHHHH
Q 010239 306 LKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG-RRPLLLGGVSGI 384 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~r~~~~~~~~~~ 384 (514)
.+...+...+. ...+.....|.|.++++.+. +..+.+...+...++.++++++.|++.||++ ||+.+..+..+.
T Consensus 199 ~~~~~~~~~~~----~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~ 273 (355)
T TIGR00896 199 AWQVTVFFGLQ----SGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ 273 (355)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence 44433322222 22233456678888888877 7888999999999999999999999999995 566666666666
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeec-cccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 385 VISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMIS-EVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
+++.+.+... .. ..... ...+++.+. ....+...+... +..+++.++...++.+...+++..++|.+.|.+.
T Consensus 274 ~~~~~~~~~~----~~-~~~~~-~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 274 LVGLCGLLFA----PM-HGLWA-WALVLGLGQ-GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHHHHHHHHh----hh-hHHHH-HHHHHHHhh-hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544321 11 12111 222333222 222334334444 3444577899999999999999999999999999
Q ss_pred HhhC
Q 010239 464 DLLG 467 (514)
Q Consensus 464 ~~~g 467 (514)
|+.|
T Consensus 347 ~~~g 350 (355)
T TIGR00896 347 DISG 350 (355)
T ss_pred HHhc
Confidence 9887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=240.58 Aligned_cols=341 Identities=16% Similarity=0.133 Sum_probs=233.6
Q ss_pred HHhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 010239 61 GLLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139 (514)
Q Consensus 61 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 139 (514)
.+....+.....+..|. ++++ +|+|+.+.+++.+++.+++.+++++.|+++||+|||++++++.++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 33444455667888885 8787 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc---------
Q 010239 140 VTALAP-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--------- 209 (514)
Q Consensus 140 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------- 209 (514)
++++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 99999999999999966 4566788999999999999999999988888888887777665541
Q ss_pred ccchhHHH-HhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhh
Q 010239 210 VAGWRYMY-GASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELS 287 (514)
Q Consensus 210 ~~~wr~~f-~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
..+||+.| ++.+++..+. .+...+.+|+|+...+ + ++ . +..+.. ..
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~--~-----~~~~~~--~~----------- 209 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPA-----T-------GK--L-----SFKGAR--WS----------- 209 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCccccc-----c-------hh--c-----cccccc--cc-----------
Confidence 22899999 4445554443 3334445665531000 0 00 0 000000 00
Q ss_pred hccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010239 288 YVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVL 366 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 366 (514)
..++.....++.++++..+...+...+... .......+.|.++++ .+. +..+++.......+..++++++.|+
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~ 283 (366)
T TIGR00886 210 -VGTGALGDQLKVFRDRHTWILALLYSVTFG----SFLGVSSIFAMFFKDQFGL-SKVTAGAYASLGGLLGSLARPLGGA 283 (366)
T ss_pred -ccchhHHHHHHHHhccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHhhccch
Confidence 000001134456666654444333322222 223455666777655 466 7788888888899999999999999
Q ss_pred HHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCC-cchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHH
Q 010239 367 VVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDD-VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 445 (514)
Q Consensus 367 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 445 (514)
+.||+++|+.+..+......+..++.... ..+ +.+.......+...+.+... +..+....+..| +++|+++|+.+
T Consensus 284 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~ 359 (366)
T TIGR00886 284 ISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSPLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVG 359 (366)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHH
Confidence 99999998887776666555555443321 111 22222233333333333333 345577888888 68999999999
Q ss_pred HHHHHH
Q 010239 446 LVNFGA 451 (514)
Q Consensus 446 ~~~~~g 451 (514)
..+++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 887765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=241.11 Aligned_cols=360 Identities=11% Similarity=0.074 Sum_probs=246.8
Q ss_pred ccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010239 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR-RRELILAALLYLVGALVTALAPDFIIM 150 (514)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (514)
.+..+.+.++ +|++..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+
T Consensus 23 ~~l~~~l~~~-------~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 23 VTLGSYMSKT-------LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5556666666 89999999999999999999999999999999965 788899999998999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHh--------hcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHH
Q 010239 151 VVGRFVFGIGIGLAMHAAPMYIA--------ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222 (514)
Q Consensus 151 ~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~ 222 (514)
++.|++.|++.+...+...++.. |......|.+.+| .+|.++++.+++.+.... .|+ +|++.++
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~ 167 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNI-QLYITAG 167 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhH-HHHHHHH
Confidence 99999999988777776665542 2222234455554 468888888888773322 455 4556666
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhh
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 302 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
..++..+..+++||+|+.. + +++ ... ++..+.+.++++|
T Consensus 168 ~~~~~~~~~~~~~e~~~~~---~-~~~---------------------------~~~----------~~~~~~~~~~~~k 206 (418)
T TIGR00889 168 SSALLGVFALTLPDIPVAK---S-TAK---------------------------MSI----------KVMLGLDAFILFK 206 (418)
T ss_pred HHHHHHHHHhcCCCCCCCc---c-ccc---------------------------cCH----------HHHhhhhHHHHhc
Confidence 6666555556778765300 0 000 000 0001112345667
Q ss_pred hchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCch
Q 010239 303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFS-------AASDATRVSILLGLFKLIMTGLAVLVVERLGRRP 375 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 375 (514)
++.++...+..++..... .....+.+.+.++.+.. .....+...+...+..+++.++.+++.||+|+|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~ 282 (418)
T TIGR00889 207 NKRMAIFFFFSMLLGAPL----QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK 282 (418)
T ss_pred CCCeeeHHHHHHHHHhHH----HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 776555444433332211 12334556666666641 1255688889999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhccCCc--chHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHH-HHHHHHH
Q 010239 376 LLLGGVSGIVISLFLLGSYYLFLDDV--PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV-LVNFGAN 452 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~ 452 (514)
++..+.++..++..++... .... .+..+...++.+.+.. ...+....++.|.+|++.|+++.|+.+ ....+|.
T Consensus 283 ~l~~~~~~~~v~~~l~~~~---~~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~ 358 (418)
T TIGR00889 283 VMLLSLVAWALRFGFFAYG---DPEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS 358 (418)
T ss_pred HHHHHHHHHHHHHHHHHHc---CcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence 9999888887776555431 0111 1222222333333332 233444577899999999999999997 5678999
Q ss_pred HHHHHhchHhHHhh------CcchhhHHHHHHHHHHHHHhCCCCCCCCC
Q 010239 453 ALVTFAFSPLKDLL------GAGILFYAFGVIAVLSLAFIFXXXXXXXX 495 (514)
Q Consensus 453 ~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (514)
+++|.+.|.+.|+. ||+..|.+.+++.+++.++.+++.+++++
T Consensus 359 ~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 359 LLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999984 47778888888877777777776766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=236.47 Aligned_cols=356 Identities=17% Similarity=0.117 Sum_probs=252.3
Q ss_pred HhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR----RELILAALLYLVG 137 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~~~ 137 (514)
+.+....+...|.+|.+.+| +|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~ 84 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A 84 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence 33344557778888888888 899999999999999999999999999999999984 3333332222 2
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHH
Q 010239 138 ALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMY 217 (514)
Q Consensus 138 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 217 (514)
...+..+++++.+++.|++.|++.+...+...+++.++ +++|+++++......++|..+||++++++.++. +||..|
T Consensus 85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f 161 (382)
T PRK11128 85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAIL 161 (382)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHH
Confidence 23344468899999999999999998999888888877 356889999999999999999999999999987 999999
Q ss_pred HhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchh
Q 010239 218 GASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSL 297 (514)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (514)
++.++..++..+..++.||.++. + +.+ +..++...++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~------------------------------~~~~~~~~~~ 198 (382)
T PRK11128 162 WILTAGVASMLLGQLLRPTIMPQ----G---------ESR------------------------------QQESAGWPAW 198 (382)
T ss_pred HHHHHHHHHHHHHHHccCCCCCc----c---------ccc------------------------------cccccccchH
Confidence 98876555444444444443210 0 000 0000112356
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhh
Q 010239 298 REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLL 377 (514)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 377 (514)
++++|++.++...+..++.... ......+.|.+.++.|. +..+.+.......++.++..++.+++.||+++|+.+
T Consensus 199 ~~i~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l 273 (382)
T PRK11128 199 KALLKEPTVWRFLLCVSLLQGS----HAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL 273 (382)
T ss_pred HHHHcChhHHHHHHHHHHHHHH----hHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 7788887766655444433322 12334455667677887 777888888888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHH-HHHHHHHHH
Q 010239 378 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVT 456 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~ 456 (514)
..+..+.+++.+++.. .++.+..+...++.+...... .+....+..+. +++++++..++.+.. ..+|..++|
T Consensus 274 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~ 346 (382)
T PRK11128 274 LLSAICGVVRWGLMGS-----TTALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT 346 (382)
T ss_pred HHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776655442 234444444444444444333 33444666666 456678888888744 566778999
Q ss_pred HhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 457 FAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 457 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
.+.|.+.|..|+ ..++..+++.+++.++
T Consensus 347 ~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 347 VLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999886 4666666666555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=235.27 Aligned_cols=370 Identities=18% Similarity=0.117 Sum_probs=259.5
Q ss_pred HHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhH-HHHHHHH
Q 010239 59 LGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRR-ELILAAL 132 (514)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~ 132 (514)
.-++..++..+.....+|...++ .|+|.+++|++..+... .+..+++|+++||+ |||| .++++.+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence 34567777888888889998888 79999999999777776 69999999999999 8875 7888888
Q ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 133 LYLVGALVTALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 133 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
+.+++..+.++. ++++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+.
T Consensus 77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 888888887776 45788888888889999999999999999999999999999999999999999999999998885
Q ss_pred ccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhc
Q 010239 210 VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 289 (514)
Q Consensus 210 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
..+||..|++.+++.++..+..+++||+++.. + + .++ .
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~---~------~~~--------------------~---------- 194 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---R---P------PRS--------------------L---------- 194 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---c---c------cch--------------------h----------
Confidence 34999999999888777655555667654310 0 0 000 0
Q ss_pred cccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q 010239 290 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLG-LFKLIMTGLAVLVV 368 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 368 (514)
.++...+++++++++.++...+...+....... ......+++.++.|. +..+.++.....+ ++.+++.++.+++.
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~-~~~~~g~~~~~~~~~~~i~g~~~~g~l~ 270 (402)
T PRK11902 195 GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGF-SAGEVGIVNKTLGLAATIVGALAGGTLM 270 (402)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000122456677887766655544333322211 112233445556777 7777887775544 56889999999999
Q ss_pred hHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHH---HHHHhhcccccccceeeccccchhhhhhHHHHHH
Q 010239 369 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLL---YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 445 (514)
Q Consensus 369 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 445 (514)
||+++|+.+..+..+..+..+.+...... .++.+.......+ ..+.......+....++.+.+|.+.+ ++.+
T Consensus 271 ~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 345 (402)
T PRK11902 271 VRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLS 345 (402)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHH
Confidence 99999988776666555544333221111 1223333322221 22222222334445677777775544 5555
Q ss_pred HHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 446 LVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 446 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
....++..+++.+.|.+.|..||...|.+.+.+++++.++.+.
T Consensus 346 ~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 346 ALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 5566777767778999999999998899888888777666543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=249.70 Aligned_cols=405 Identities=17% Similarity=0.118 Sum_probs=283.3
Q ss_pred hhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 63 LYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA 142 (514)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 142 (514)
.++... .++...+.++++ |+.+..+++|+.++....+.+..++.+.+.||||.|.+.+.|.++..+|.++.+
T Consensus 58 ~~g~~~-~~Gv~~~~~~~~-------f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lss 129 (509)
T KOG2504|consen 58 TDGLIN-SFGLLFEELMDY-------FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSS 129 (509)
T ss_pred hhcchh-eehhhHHHHHHH-------hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 344433 335677888887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH-HHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhH
Q 010239 143 LAPDFIIMVVGR-FVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST 221 (514)
Q Consensus 143 ~~~~~~~l~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 221 (514)
+++++|++++.. ++.|+|.|+.+.....++..+|+ |+|+.+.|+..++.++|.++-|++...+.+.. |||+.+++.+
T Consensus 130 F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~ 207 (509)
T KOG2504|consen 130 FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFG 207 (509)
T ss_pred HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHH
Confidence 999999998887 88999999999999999998886 77999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHhhcccC-chhHHHHhhccccCCccccHHHHHHHHHHHhC-CCCCCCC--chhHHHHHHhhhhcc-ccccch
Q 010239 222 PLAVIMGMGMWWLPA-SPRWLLLCAMKRKGDMQDLRESAISCLCRLRG-QSIGDSA--PTEVDEILTELSYVG-EDKEVS 296 (514)
Q Consensus 222 ~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 296 (514)
.+.+-..+....+++ .++....+.++.+. .....+......++... .+..... ..+........+..+ ...+..
T Consensus 208 ~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (509)
T KOG2504|consen 208 GISLNVLVAGALLRPLSPPKKPNEEKDLRN-SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAF 286 (509)
T ss_pred HHHHHHHHHHHHcCCCCcCCCchhhhhhcc-ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhh
Confidence 988765555544332 22210000000000 00000000000000000 0000000 001111111111111 011111
Q ss_pred h----HHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 297 L----REVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 297 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
. .++++++.+.... +.......++.....++|.+.++.++ +..++..+.+..++..++++++.|++.|+..
T Consensus 287 ~~~~d~~ll~~~~fl~~~----~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 287 LSMLDLSLLKDPKFLLLA----LSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred hhhhhHHHHcCchHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 1 4667775444333 33333444556777888999898888 8899999999999999999999999999988
Q ss_pred Cch--hhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHH
Q 010239 373 RRP--LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFG 450 (514)
Q Consensus 373 ~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 450 (514)
.++ +..++.+..+++.+.+.. ...+..+....++.+.....+.......+.|+.+.+.-..+.|+...+..+
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi 435 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI 435 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence 443 444444555554433332 223333333344444444444455556889999999999999999999999
Q ss_pred HHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCCC
Q 010239 451 ANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 451 g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+..+||.+.|.+.|..| |...|+..+.+.+++..+.++.
T Consensus 436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence 99999999999999988 8888998888888877665543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=242.39 Aligned_cols=351 Identities=15% Similarity=0.080 Sum_probs=226.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---hhh-----hHHHHHHHHHHHhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAP-----DFIIMVVGRFVFGIG 160 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 160 (514)
+|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++ .+...++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999999999999999999999999887666655443221 111 111122333444443
Q ss_pred hhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhccc-Cchh
Q 010239 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLP-ASPR 239 (514)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~~~ 239 (514)
.....+....+..+ . .+++++.++......++|..++|++++.+.+. +|++.|++.++++++..+..++++ |+++
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 33333333333332 2 24567888999999999999999999998763 899999998888877655555543 3322
Q ss_pred HHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHH
Q 010239 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQ 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (514)
....++ ++ + +++.+.+....++.+|++..+...+........
T Consensus 197 ~~~~~~-----------~~--------------------------~-~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~ 238 (420)
T PRK09528 197 TAKVAN-----------AL--------------------------G-ANASAVSLKDALALLKLPKFWFLVLYVIGVACF 238 (420)
T ss_pred hhhhcc-----------ch--------------------------h-cccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence 000000 00 0 000011112344566666555443322222211
Q ss_pred HhhChhHHHHhHHHHHH----HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhh
Q 010239 320 QITGQPSVLYYAASILQ----SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYY 395 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 395 (514)
. .....+.|.++. +.+. +....+.......+...++.++.|++.||+++|+.+..+..+..+...++++
T Consensus 239 ~----~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~-- 311 (420)
T PRK09528 239 Y----DVFDQQFPNFFASFFATPEQ-GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF-- 311 (420)
T ss_pred H----HHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh--
Confidence 1 122222333332 2233 4456788888888999999999999999999999988887777776666543
Q ss_pred hccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHH-HHHHHHHHHHHHHHhchHhHHhhCcchhhHH
Q 010239 396 LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV-AVLVNFGANALVTFAFSPLKDLLGAGILFYA 474 (514)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 474 (514)
.++.+..+....+.+..... ..+....++.|.+|++.+++..+. .++...+|.++++.+.|.+.|..||+..|..
T Consensus 312 ---~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 312 ---ATGPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred ---cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 23344333333333322222 223334677888899999888766 5777889999999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 010239 475 FGVIAVLSLAFIFXXXXX 492 (514)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (514)
.+++.++..++.+...++
T Consensus 388 ~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 388 LGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888877766665544443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-28 Score=232.11 Aligned_cols=394 Identities=14% Similarity=0.142 Sum_probs=248.0
Q ss_pred chhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010239 46 SVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR 125 (514)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 125 (514)
..++.+..+...++......+.....+..++.+..| +| +.....|+.+.+.++.++..++.|+++|.||||.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~ 109 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY 109 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH
Confidence 334444443444444444444555556677888887 77 4577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhh
Q 010239 126 ELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205 (514)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 205 (514)
+++.+.++..+|+++++.++|...++.+..+.|+|.|.... ....++|..|.|.|+...++......+...+++.++..
T Consensus 110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 99999999999999999999999999999999999886664 46669999999999888887776666666678888877
Q ss_pred hcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHH------------------h
Q 010239 206 LVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRL------------------R 267 (514)
Q Consensus 206 l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 267 (514)
+..+. +|||.|++.++...+.++..+++..+|++-..++++ ..+. +..+.++.+ .
T Consensus 189 ~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~-----~s~~-~~l~~lD~IG~~L~~~Gl~LfLlgl~wg 261 (599)
T PF06609_consen 189 FAAHS-GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRK-----LSKR-EQLKELDWIGIFLFIAGLALFLLGLSWG 261 (599)
T ss_pred hccCC-CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhcccc-----CcHH-HHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 76655 999999999888777444333322223321111100 0011 111111111 1
Q ss_pred CC-CCCCCCchhHHHHHHh---------hhhc-cccccchhHHHhhhch-hhHHHHHHHHHHHHHhhChhHHHHhHHHHH
Q 010239 268 GQ-SIGDSAPTEVDEILTE---------LSYV-GEDKEVSLREVFHGKC-LKALIIGAGLVLFQQITGQPSVLYYAASIL 335 (514)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
+. ..++.+...+...... .+.. ..+++.-..+++++++ +...++..++..+. .+....+|.....
T Consensus 262 G~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~---~~s~~~l~p~~~~ 338 (599)
T PF06609_consen 262 GYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMN---FFSVNILWPQQVV 338 (599)
T ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 11 2234444333222211 1111 1122233456777632 22222222222222 1222334444333
Q ss_pred HHcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHhHhCC-chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHH
Q 010239 336 QSAGFSAA---SDATRVSILLGLFKLIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLL 411 (514)
Q Consensus 336 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (514)
.-++. +. ...++......++..++.++.+.+..+++| |+.++++..++.+++.+++.. ..++....+...++
T Consensus 339 ~vf~~-d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~~~n~~~~i~~~~l 414 (599)
T PF06609_consen 339 NVFGS-DPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---RPDNKNAAIAFLVL 414 (599)
T ss_pred hhccC-CCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---cCCCcchHHHHHHH
Confidence 33333 22 356788888899999999999999999887 455556666666555555432 12222222333333
Q ss_pred HHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 412 YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
.+.+.+....+. ...++-..|++..|++.|+..+++.+|+.++..++..+.
T Consensus 415 ~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 415 AGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333 466777889999999999999999999999998886553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=217.77 Aligned_cols=366 Identities=19% Similarity=0.197 Sum_probs=282.0
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
..+....++.|+......+.+|++++- |+++..+.+++...++.|+.+.+++.|++.+|+|+|+.+++|+.++
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~ 88 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLY 88 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHH
Confidence 444455677888888899999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---hhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc--
Q 010239 135 LVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-- 209 (514)
Q Consensus 135 ~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-- 209 (514)
++++.+.. ...++..++++-++.|.|.+...+.++.++....++++-.+.+++.+..+++|.+++|++++.+..+
T Consensus 89 avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~ 168 (422)
T COG0738 89 AVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168 (422)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 99999984 5678999999999999999999999999999999998889999999999999999999999988762
Q ss_pred ----------------ccchhHHHHhhHHHHHHHHHHhhc--ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCC
Q 010239 210 ----------------VAGWRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSI 271 (514)
Q Consensus 210 ----------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (514)
...||++|...+...+++.+.... .|+.+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~------------------------------ 218 (422)
T COG0738 169 ALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA------------------------------ 218 (422)
T ss_pred hhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc------------------------------
Confidence 225888888888887776555554 34432200
Q ss_pred CCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHH
Q 010239 272 GDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVS 350 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 350 (514)
++..+.+.....++++++..+...+..+++..... ....|.+.++.+ .+. +..++....
T Consensus 219 ---------------~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~g~-~~~~aa~~~ 278 (422)
T COG0738 219 ---------------PSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELLGL-NEQQAAYYL 278 (422)
T ss_pred ---------------ccccccccchHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 00011111256788899888887777777766654 455667777777 555 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeecc
Q 010239 351 ILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE 430 (514)
Q Consensus 351 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (514)
+..+++.++|++++.++..|+...+.+....++..+.++...+. +....+....+.+.+.+. ..|..++...+
T Consensus 279 s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l~~ig~F~si-mfPTIfslal~ 351 (422)
T COG0738 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------GGVVALYALFLIGLFNSI-MFPTIFSLALK 351 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHhHH-HHHHHHHHHHh
Confidence 99999999999999999999999888877665555444444331 223334444444444444 45777788888
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 431 VFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 431 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
..| ++.. ..|........|+++.|++.|++.|..|....+.....+|.+..+..
T Consensus 352 ~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~ 405 (422)
T COG0738 352 NLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFF 405 (422)
T ss_pred ccC-cccc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 888 4333 33344444668899999999999999998777775666665555333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=205.30 Aligned_cols=372 Identities=22% Similarity=0.186 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010239 51 ILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILA 130 (514)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 130 (514)
++.+..+.+..+...-..+..+|.++.+.+| +|+|.+..|+++++..+...+.+++..++..|+|.++.+..+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~ 83 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLA 83 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHH
Confidence 3333444455566666688899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc
Q 010239 131 ALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 210 (514)
+++..+|.++-... +.+.++.+-.+.|.|.+......+.++.+.|| |+-+..+++|....++|..+++.+...+.++.
T Consensus 84 Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 84 LLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 99999999999887 88889999999999999999999999999998 55799999999999999999999999999877
Q ss_pred cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhcc
Q 010239 211 AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVG 290 (514)
Q Consensus 211 ~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (514)
.+||....+.+.++++..+.++.-...++ . ...
T Consensus 162 ~gW~~aL~~WAl~allAl~~WlPq~~r~~-~----------------------------------------------~~~ 194 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWLPQALREQ-A----------------------------------------------ASI 194 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhccccc-c----------------------------------------------ccc
Confidence 68999999999999887776654221110 0 002
Q ss_pred ccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 291 EDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
+.+..+...++|++.-|.+.+.+.+ +...++....|+|.++.+.|. +..++|.+.+...+..++.++....+.+|
T Consensus 195 ~~~~~~~~~vw~~~~aW~vtLfmGl----qS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R 269 (395)
T COG2807 195 ATKLVSVRKVWRSPLAWQVTLFMGL----QSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARR 269 (395)
T ss_pred ccccccccccccCchhHHHHHHHHh----hHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334457777766665544444 444466788899999999999 99999999999999999999999999997
Q ss_pred hC-CchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeecc-ccchhhhhhHHHHHHHHH
Q 010239 371 LG-RRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISE-VFPLRLRGRGLSVAVLVN 448 (514)
Q Consensus 371 ~g-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~ 448 (514)
.. +|+.......++.++.+.+.+ .+.+..+.+ ..+++.+.+..+ |.....+.. .-.++..+.-.|+.+.++
T Consensus 270 ~~n~r~~~~~~~~~~l~G~~G~~~---~P~~~~~lw---~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 270 SKNQRPLVVLALLLMLVGLVGLLL---APGQLPILW---ALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred hcccchHHHHHHHHHHHHHHHHHH---hhhhHHHHH---HHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 65 455555555566655555432 122333333 233333333333 333334433 344577888899999999
Q ss_pred HHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCCCC
Q 010239 449 FGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 449 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
++-..+||.++|.+.|..| |...+..++.+.++..+..+...
T Consensus 343 YllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG 385 (395)
T ss_pred HHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999987 66666666666666655555433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=230.32 Aligned_cols=364 Identities=15% Similarity=0.078 Sum_probs=243.9
Q ss_pred hcccccccccccccc-cCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 64 YGYDIGSTSCATISI-ESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA 142 (514)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 142 (514)
.........|.+|.. .++ +|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 86 (396)
T TIGR00882 14 YFFIMSAYFPFFPIWLHDV-------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF 86 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333444555666654 344 799999999999999999999999999999999999999887776665444321
Q ss_pred ---hh-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 143 ---LA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 143 ---~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+. +.+..+++.|++.|++.+...+....+..|.. ++++..++......++|..++|++++.+.+. +||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--~~~ 162 (396)
T TIGR00882 87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI--DPQ 162 (396)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--Cch
Confidence 11 22345677788999998888888888877754 3345677888888899999999999988653 899
Q ss_pred HHHHhhHHHHHHHHHHhhc-ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
++|++.+++.++..+..+. .||+|+.. + ..+ ..+ .+.++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~~~----~~~------------------~~~~~~~ 204 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLMFAKPKAPSSA---T-------------VAN----ALG------------------ANASAFS 204 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhh---h-------------hhc----ccc------------------cccCCCC
Confidence 9999998888876554444 34433200 0 000 000 0001111
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc----CCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA----GFSAASDATRVSILLGLFKLIMTGLAVLVVE 369 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 369 (514)
..+.++++|++.++...+....... .+.....+.+.++++. +. +....+.......+...++.+..+++.|
T Consensus 205 ~~~~~~~l~~~~~~~~~l~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~-~~~~~g~~~~~~~i~~~~~~~~~g~l~~ 279 (396)
T TIGR00882 205 LKLALELFRQRKFWMFVLYVVGVAC----VYDVFDQQFANFFTSFFATPQQ-GTRVFGYVTTMGELLNALIMFCAPLIIN 279 (396)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345677777765544332222111 1222333445554443 22 3456788888888899999999999999
Q ss_pred HhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHH-HHHHH
Q 010239 370 RLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV-AVLVN 448 (514)
Q Consensus 370 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~ 448 (514)
|+++|+.+.++..+.++...+... .++.+..+....+.+.+... .......+..+..|++.++++.+. .+...
T Consensus 280 r~g~~~~l~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~ 353 (396)
T TIGR00882 280 RIGAKNALLIAGTIMSVRIIGSSF-----ATTALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAK 353 (396)
T ss_pred HhccchhHHHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHH
Confidence 999999988887777776655432 23344333333333322221 112223456677787888887766 57789
Q ss_pred HHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhC
Q 010239 449 FGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 449 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
.+|+.+++.+.|.+.|..|+...|.+.+++.++..++..
T Consensus 354 ~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 354 QLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877766543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=224.31 Aligned_cols=347 Identities=14% Similarity=0.119 Sum_probs=252.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.+-+.+++|++.+.+.+...+.+++.|.+.||+|+|..+++|++++...+++.++..++++++++|.+||+|.+...++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCc-chhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhcc
Q 010239 169 PMYIAETAPTPM-RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMK 247 (514)
Q Consensus 169 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 247 (514)
.++++|.+|+++ |++++|+...+.++|..+||++||.+.+.. |.+.+|++.++++++...+.+++-|..+.
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------- 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTEM------- 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCcccc-------
Confidence 999999998765 799999999999999999999999999988 99999999999999977766665433210
Q ss_pred ccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHH
Q 010239 248 RKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSV 327 (514)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (514)
+....++..+++++++++......... .++.. .....
T Consensus 253 ---------------------------------------~~~~~~~~~~~~~Ll~dP~I~~~agai---~~~n~-~lafL 289 (464)
T KOG3764|consen 253 ---------------------------------------DPDSTEQGTPMWSLLMDPYILLIAGAI---TFSNS-SLAFL 289 (464)
T ss_pred ---------------------------------------CccccccCccHHHHHhCchHhhhhcch---hhccc-hHHHh
Confidence 000223345677888877544322221 11111 11111
Q ss_pred HHhHHH-HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 328 LYYAAS-ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
--..+. +.++.. .+..+.|..+....+...++..+.|.+.||+++.+.+.....+..++..+...-+.......|...
T Consensus 290 ePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~ 368 (464)
T KOG3764|consen 290 EPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPN 368 (464)
T ss_pred CcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhh
Confidence 122233 334444 255588999999999999999999999999995444333222222222222111110011122223
Q ss_pred HHHHHHHHHhhcccccccceeeccccchh---hhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
....+.++.......|.. .+..|....+ ..|..+++......+|.++||.+.|.+.+..|+.|...+.++..++..
T Consensus 369 ~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 369 FGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 333333344444444444 3444443334 678999999999999999999999999999999998888888877766
Q ss_pred HHhCC
Q 010239 484 AFIFX 488 (514)
Q Consensus 484 ~~~~~ 488 (514)
-++.+
T Consensus 448 pvl~l 452 (464)
T KOG3764|consen 448 PVLLL 452 (464)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=260.76 Aligned_cols=342 Identities=13% Similarity=0.008 Sum_probs=238.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHH
Q 010239 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELIL---AALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPM 170 (514)
Q Consensus 94 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 170 (514)
...++..+++.+++.++++++|+++||||||+++.. ..++..+..+.+...++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457889999999999999999999999999997533 33333333334444589999999999999999999999999
Q ss_pred HHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccC
Q 010239 171 YIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKG 250 (514)
Q Consensus 171 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 250 (514)
++.+++++++|++++++.+++.++|.++||++++++.... +|++.|++.++..++..++.+++|++++.. ++ .+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 206 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNAA--PD--LKI 206 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CC--Cee
Confidence 9999999999999999999999999999999999999887 999999555555555555666676654200 00 000
Q ss_pred CccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHh
Q 010239 251 DMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYY 330 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (514)
+ ... ..+....++.+.+++.++...+...+..+.. ..+..+
T Consensus 207 ~-------------------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 247 (1140)
T PRK06814 207 D-------------------------RNI----------IRSTITLLKYAKADKRIWLAILGISWFWLVG----AVVLSQ 247 (1140)
T ss_pred c-------------------------cch----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 0 000 0001123555666666655554444433322 244456
Q ss_pred HHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhh--------------
Q 010239 331 AASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYY-------------- 395 (514)
Q Consensus 331 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-------------- 395 (514)
.|.++++ .+. +....+++.+...++.+++.++.|++.|+..+++.+..+.++.+++.+.+.+..
T Consensus 248 ~p~~~~~~~g~-~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 248 LPLLAKETLGG-DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred hHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 7777665 466 788899999999999999999999999888777766555555544444333210
Q ss_pred -hccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-hCcchhhH
Q 010239 396 -LFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGILFY 473 (514)
Q Consensus 396 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~ 473 (514)
.....+.+...+..++++.+.+. ..+...+++++..|++.+|+++|+.++...++..+++.+.|.+.+. .++...++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~ 405 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL 405 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 00013334444434444433333 3334568899999999999999999999999999999999998753 34444444
Q ss_pred HHHHHHHH
Q 010239 474 AFGVIAVL 481 (514)
Q Consensus 474 ~~~~~~~~ 481 (514)
+.+.+.++
T Consensus 406 ~~~~~~~~ 413 (1140)
T PRK06814 406 FIALANLI 413 (1140)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=226.34 Aligned_cols=377 Identities=21% Similarity=0.205 Sum_probs=272.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010239 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 123 (514)
+...+..|..-.+..++..+...... .+..+ ..-|+..++++..+..+...+.++++|.++||++|
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~-------wlv~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr 74 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALA-------WLVTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDR 74 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455556665555555554444333 33323 45688999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHH
Q 010239 124 RRELILAALLYLVGALVTALA-----PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 198 (514)
||+++.+-++.++..+..++. .+.+.+++.-++.|++.+...|+-.+++.|..|+++...+.++.+...++..++
T Consensus 75 rrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i 154 (524)
T PF05977_consen 75 RRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII 154 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence 999999988877666555442 467899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchh
Q 010239 199 GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTE 278 (514)
Q Consensus 199 g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (514)
||.++|.+.... |-.+.|++.++..++.+......+..++. ++ . ..+
T Consensus 155 GPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~----~----~~e--------------------- 201 (524)
T PF05977_consen 155 GPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPPP---SS----L----PRE--------------------- 201 (524)
T ss_pred cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccccccc---cc----c----chh---------------------
Confidence 999999998877 88899998887766654444444322110 00 0 000
Q ss_pred HHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHH
Q 010239 279 VDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFK 357 (514)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 357 (514)
. -.++-+..++-+.+++..+..++...+..+. ...+...+|.+.++ .+. +....|++.+..+++.
T Consensus 202 --~-------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~-~a~~yGll~a~~gvGa 267 (524)
T PF05977_consen 202 --R-------FFSALREGLRYVRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGG-GASGYGLLLAAFGVGA 267 (524)
T ss_pred --h-------hhhhHHHHHHHHhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCC-cHHHHHHHHHHHHHHH
Confidence 0 0001112233344444444333322222221 11233456776654 555 7888999999999999
Q ss_pred HHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhh
Q 010239 358 LIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR 437 (514)
Q Consensus 358 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (514)
++|.++.+++.+|+++++++..+.++.+++.+.+++ ..+.+.....+++.+.+... ......+..++..|++.|
T Consensus 268 i~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-----~~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~ 341 (524)
T PF05977_consen 268 ILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-----SPSFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVR 341 (524)
T ss_pred HHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHH
Confidence 999999999999999999888888887777776654 23445444444444444433 333445788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhC
Q 010239 438 GRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 438 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
|+++++..+....+..+|..+.|.+.+..|....+.+.+++.+++.++.+
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777766655555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=229.21 Aligned_cols=394 Identities=12% Similarity=0.074 Sum_probs=240.7
Q ss_pred ccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhhhhHHH-HH
Q 010239 74 ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFII-MV 151 (514)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 151 (514)
....+.++ +|++..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++++... ++
T Consensus 37 l~~yl~~~-------lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~ 109 (489)
T PRK10207 37 LAVFFVKQ-------LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIF 109 (489)
T ss_pred HHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 34455566 89999999999999999999999999999999 99999999999999999999999876544 55
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhcCCCC--cchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHH
Q 010239 152 VGRFVFGIGIGLAMHAAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM 229 (514)
Q Consensus 152 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 229 (514)
++|+++|+|.|...+...+++.|.+|++ +|+++++++..+.++|..+||.+++++.++. |||+.|++.++..++..+
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999877 4578999999999999999999999999988 999999996554333333
Q ss_pred HhhcccCchhHHHHhhccccCCccccHHHHHH------HHHHHhCCCCCCCCchhHHHHH----Hh---hhhccccccch
Q 010239 230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAIS------CLCRLRGQSIGDSAPTEVDEIL----TE---LSYVGEDKEVS 296 (514)
Q Consensus 230 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~ 296 (514)
...+.++..+....++++++.|..+...-... ........ .+ .....-.. .. ...+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~i~~~~f~~~~~~~---- 260 (489)
T PRK10207 189 VYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHN--VE--VANLVLIVLSIVVTIIFFREAFKL---- 260 (489)
T ss_pred HHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhh--hh--HHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 33333322110000000000011000000000 00000000 00 00000000 00 0000110
Q ss_pred hHHHhhhchhhHHHHH--HHHHHHHHhhChhHHHHhHHHHHHH-cCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 297 LREVFHGKCLKALIIG--AGLVLFQQITGQPSVLYYAASILQS-AGFS---AASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 297 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
.+.+|++.+....+. ..+.+.. +.......+.+.++ .... -......+.....+..++..++.+++.||
T Consensus 261 -~~~~r~r~~~~~~l~~~~~~f~~~----~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r 335 (489)
T PRK10207 261 -DKTGRNKMFVAFVLMLEAVVFYIL----YAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH 335 (489)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHH----HHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 134444433322211 1112221 12222333334332 2210 01134455555667777888889999999
Q ss_pred hCCchh-------hhhhHHHHHHHHHHHHH---hhhcc-CCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhh
Q 010239 371 LGRRPL-------LLGGVSGIVISLFLLGS---YYLFL-DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGR 439 (514)
Q Consensus 371 ~g~r~~-------~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 439 (514)
+++|+. +.+++++.+++++.+.. ..... ...+.+.++...++.+.......|....++.+..|++.++.
T Consensus 336 l~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~ 415 (489)
T PRK10207 336 LGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGF 415 (489)
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHH
Confidence 998863 66677777766654421 11111 12222333333444444445556676788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchHhHH----------hhCcchhhHHHHHHHHHHHHHhCC
Q 010239 440 GLSVAVLVNFGANALVTFAFSPLKD----------LLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 440 ~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
++|+.+...++|+.++..+...... ...+.+.|...++.+++..++.+.
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877754421 112345666666666655555544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=255.39 Aligned_cols=341 Identities=18% Similarity=0.089 Sum_probs=235.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA---LAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 445679999999999999999999999999999999999877666655444 45789999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc--------ccchhHHHHhhHHHHH-HHHHHhhcccCchh
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL--------VAGWRYMYGASTPLAV-IMGMGMWWLPASPR 239 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~~wr~~f~~~~~~~~-~~~~~~~~~~e~~~ 239 (514)
.+++.|++|+++|++++++...+..+|.++|+++++++.+. ..+|++.+.+..+... +.++..+.+||.++
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999999999999999999999998875 3245555544444333 33444555777654
Q ss_pred HHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHH
Q 010239 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQ 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (514)
....+. + + + .... .......++.+++++..+..++...+..+.
T Consensus 205 ~~~~~~-----~---~-~-----------------~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1146)
T PRK08633 205 AAPEVF-----D---K-K-----------------KYLF-----------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFI 247 (1146)
T ss_pred CCcccc-----c---c-c-----------------cccc-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 210000 0 0 0 0000 000112344566666555444433333332
Q ss_pred HhhChhHHHHhHHHHH-HHcCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 320 QITGQPSVLYYAASIL-QSAGFSAAS-DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
. .....+.|.++ +..+. +.. ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 248 ~----~~~~~~~~~~~~~~~g~-s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (1146)
T PRK08633 248 S----QLAQANFPAYAKEVLGL-DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--- 319 (1146)
T ss_pred H----HHHHHhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---
Confidence 2 23344555555 44666 666 88999999999999999999999999999888877777776666655432
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCc--chhhHHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGA--GILFYAF 475 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~ 475 (514)
.+.+..++..++++.+.+.. .+...+++.+..|++.||+++|+.+++..++.++++.+.+.+.. .++ ...+++.
T Consensus 320 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~ 395 (1146)
T PRK08633 320 --PSLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLI 395 (1146)
T ss_pred --hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHH
Confidence 23333333333343333333 33445788899999999999999999999998888776655543 433 3344444
Q ss_pred HHHHHH
Q 010239 476 GVIAVL 481 (514)
Q Consensus 476 ~~~~~~ 481 (514)
+.+.++
T Consensus 396 ~~~~~~ 401 (1146)
T PRK08633 396 ALVTLI 401 (1146)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=216.46 Aligned_cols=362 Identities=17% Similarity=0.143 Sum_probs=240.8
Q ss_pred ccccccccccccCCCCCCCccccCCchh-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 010239 68 IGSTSCATISIESPTLSGISWYDLSSVE-IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD 146 (514)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 146 (514)
+...+.+.|.+.+| +|+|..+ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.+++++
T Consensus 42 R~n~s~a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 42 RPGESFITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred hchHHHHHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788889888 9999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHh---hHHH
Q 010239 147 FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGA---STPL 223 (514)
Q Consensus 147 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~---~~~~ 223 (514)
+..+.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++++ ... |||+-+.+ ....
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~-gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTL-GWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CchhHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999994 445 89876543 3333
Q ss_pred HHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhh
Q 010239 224 AVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG 303 (514)
Q Consensus 224 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (514)
..+..++.+++|..++.+.-++.+...+ +.+ .+.......+ ........+......-..-...+++..++
T Consensus 192 ~~~a~~~a~~LP~~~~sl~f~~~~~~~~-----~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~n 261 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLFFNRLEDVRG-----ALP----CELDQMVPGP-GGKLEDYLGTCRDSFLVRMLSELVTIYRN 261 (511)
T ss_pred HHHHHHHHHhCCCCchhhhhcccccccc-----ccc----cccccCCCCC-ccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence 4445666777886655443322110000 000 0000000000 00000000000000000001122223333
Q ss_pred chhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhh--H
Q 010239 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGG--V 381 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~--~ 381 (514)
+.++-..+.+....++++.+..|...+.++..-....--|..-.+..+.+.+..+..|++-.+..+---+.++ .
T Consensus 262 ----~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s 337 (511)
T TIGR00806 262 ----PQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS 337 (511)
T ss_pred ----cchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 3344445555666666777777877776665431222456667777777888888888885544332222222 2
Q ss_pred HHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhc
Q 010239 382 SGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF 459 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 459 (514)
++.+..++++. ..++.|...+..+++...+.+... +...-++.....+.-|..+|+.+++..+-..+-..+.
T Consensus 338 ~~~~gll~~m~-----~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 338 AIQAGLVFWMS-----QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHHHHHhhhhh-----cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 22222222222 256788888888888888877654 4345556666667779999998887766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=221.75 Aligned_cols=327 Identities=13% Similarity=0.044 Sum_probs=227.4
Q ss_pred ccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHH-HHHHHHHHHHHHHHH
Q 010239 68 IGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-----GRRRE-LILAALLYLVGALVT 141 (514)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~ 141 (514)
....++.+|.+.+| +|+|.+++|++... .+...+ .+++|+++||+ ||||. ++.+.++.++.....
T Consensus 4 ~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 4 LGLVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred chhHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44567778888888 89999999999755 555555 99999999998 89886 567788888887777
Q ss_pred Hhh---hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccc------
Q 010239 142 ALA---PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG------ 212 (514)
Q Consensus 142 ~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~------ 212 (514)
++. .+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+.. +
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~ 153 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLI 153 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Confidence 777 466777888888899999999999999999999999999999999999999999999999888776 6
Q ss_pred --hhHHHHhhHHHHHHHHHHhhc-ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhc
Q 010239 213 --WRYMYGASTPLAVIMGMGMWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 289 (514)
Q Consensus 213 --wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
||..|++.++..++..+..++ .||+++. ++ + . + +.
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~-----~---~-~-----------------------~~------- 191 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQED---AS-----V---P-K-----------------------PL------- 191 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cc-----c---c-h-----------------------hH-------
Confidence 999999999887775555443 4553220 00 0 0 0 00
Q ss_pred cccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q 010239 290 GEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLG-LFKLIMTGLAVLVV 368 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 368 (514)
.++.+..++++++++..+............ ...+.....+.|.++++.|+ +..+.+......+ +..+++.++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 192 TQAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 000112345566665422332222222222 22233455667777777777 7777777776655 67889999999999
Q ss_pred hHhCCchhhhhhHHHHHHHHHHHHHhhhccC------CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHH
Q 010239 369 ERLGRRPLLLGGVSGIVISLFLLGSYYLFLD------DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 442 (514)
Q Consensus 369 d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 442 (514)
||+|+|+.+..+.++.++...++........ +..+......++...+.. ...+...++..|.+|+++||+.+|
T Consensus 270 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 348 (356)
T TIGR00901 270 QPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMA 348 (356)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHH
Confidence 9999999888877777666554433211100 122323323322233333 334555689999999999999999
Q ss_pred HHHHHHH
Q 010239 443 VAVLVNF 449 (514)
Q Consensus 443 ~~~~~~~ 449 (514)
+.++..+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=215.77 Aligned_cols=373 Identities=16% Similarity=0.013 Sum_probs=252.0
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHH--HHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLI--TSGSLYGALIGSILA-FNIADILGRRRELILAA 131 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~~~~~~ 131 (514)
..+...++..|...+...|.+|...+| .|.|.+++|++ .+.+.+...+.++++ ++..||+||||..++.+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 445566788899999999999999999 89999999997 467788888888888 44799999999876665
Q ss_pred HHH-HHHHHHHH---hhhh-HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 132 LLY-LVGALVTA---LAPD-FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 132 ~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
.+. ++.....+ ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++|+...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l 156 (390)
T TIGR02718 77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL 156 (390)
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222222 1222 334455556677788888889999999999988889999999999999999999999898
Q ss_pred cccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhh
Q 010239 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 286 (514)
Q Consensus 207 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
.+.. +||..|++.+++.++..+..++++|+++. ++ + +
T Consensus 157 ~~~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~---~-----~------------------------------- 193 (390)
T TIGR02718 157 FGKF-GQRPAFLLVACVPLASLVCVLWLKDRAVA---SP---E-----A------------------------------- 193 (390)
T ss_pred HHHh-CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cc---c-----c-------------------------------
Confidence 8887 99999999998887755555555443210 00 0 0
Q ss_pred hhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHH-HHHHHHHHHH
Q 010239 287 SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGL-FKLIMTGLAV 365 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 365 (514)
++++..+.++.+|++..+......++..... .....+.+.++++.|+ +.++.+.......+ ..+++.++.|
T Consensus 194 ---~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g 265 (390)
T TIGR02718 194 ---PLARRASLFRFFRRPLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGA 265 (390)
T ss_pred ---chhhHHHHHHHHcCcCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 0001123556777776555444333333222 2333455667778888 78888888777764 6667889999
Q ss_pred HHHhHhCCchhhhhhHHHHHHHHHHHHHhhh-ccCCcchHHHHHHHHHHHHhhcccccccceeeccccch-hhhhhHHHH
Q 010239 366 LVVERLGRRPLLLGGVSGIVISLFLLGSYYL-FLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL-RLRGRGLSV 443 (514)
Q Consensus 366 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~ 443 (514)
++.||+++|+.+..+..+.++.......... ..............+.....+... +.......+..++ +.+++.+++
T Consensus 266 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~ 344 (390)
T TIGR02718 266 WLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTA 344 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHH
Confidence 9999999999888766655333222211110 001111111111111111122222 2333444455554 789999999
Q ss_pred HHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 444 AVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 444 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
.+...++|..++|.+.|.+.|..|+...|...+++.+++.++.
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888888777777765543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=205.86 Aligned_cols=356 Identities=19% Similarity=0.161 Sum_probs=225.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHH
Q 010239 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP 169 (514)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 169 (514)
+.+....|.+.|.|.++..+.++.+|.++||+|||++++++++..++..++.+.+.|+..+++.|++.|+..| ...+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999777777999999998 777889
Q ss_pred HHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc-cchhHHHHhhHHH----HHH-HHHHhhcccCchhHHHH
Q 010239 170 MYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPL----AVI-MGMGMWWLPASPRWLLL 243 (514)
Q Consensus 170 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~----~~~-~~~~~~~~~e~~~~~~~ 243 (514)
++++|.+++|+|+++++.+...+++|.++||.+|+++.+.. ..=+++|.....+ ... .....+++||+-+..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r-- 220 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR-- 220 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch--
Confidence 99999999999999999999999999999999999998711 1223333332222 222 344556789884321
Q ss_pred hhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHH---HHHHHHHH
Q 010239 244 CAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIG---AGLVLFQQ 320 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 320 (514)
+++ ++....+++.+...... +.+........|++.....+.. +.+..+..
T Consensus 221 -k~~---~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly 273 (451)
T KOG2615|consen 221 -KRN---DEHSTLQEAADDRLALL-----------------------KFARIFKVAALRNPPLLDFISVLRIFGLHYFLY 273 (451)
T ss_pred -hhc---ccccchhhhhhhhhhhc-----------------------chhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 111 11111111111000000 0000000111222211111111 11111111
Q ss_pred hhChhHHHHhHHHH-HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC--CchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 321 ITGQPSVLYYAASI-LQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG--RRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
...+....++.+.+ -+..++ ++.+.|.+....++.+.+......+..+|.+ .+-.+..+..++.-..+++..
T Consensus 274 ~~l~s~~~~t~~~l~~~rfg~-ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~---- 348 (451)
T KOG2615|consen 274 LELFSGLENTVLFLTHGRFGY-SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL---- 348 (451)
T ss_pred HHHHHHHHhhHHHhhcCccCC-ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc----
Confidence 11112222333332 145677 7888899888888888888877777777766 444444444444444444332
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh-CcchhhHHHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFG 476 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~ 476 (514)
...+........+......... +-...++....|++.||+++|+....+.++.++||.+.|.+..+. +-+..+...+
T Consensus 349 -~~~~~~l~~~s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~ 426 (451)
T KOG2615|consen 349 -ARTPVVLYLGSTLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWG 426 (451)
T ss_pred -cccchhhhHHHHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehH
Confidence 2233333333333333333333 344578889999999999999999999999999999998887643 2233344334
Q ss_pred HHHHHH
Q 010239 477 VIAVLS 482 (514)
Q Consensus 477 ~~~~~~ 482 (514)
.+.++.
T Consensus 427 ~L~~~~ 432 (451)
T KOG2615|consen 427 ALLLIP 432 (451)
T ss_pred HHHHHH
Confidence 444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=234.89 Aligned_cols=378 Identities=14% Similarity=0.169 Sum_probs=261.9
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
+...+..+......+..+..++.++++ |+++..+.|++.+.+.++++++.++.|++.||+|||+.+.++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~ 108 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIM 108 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHH
Confidence 333445566666778889999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh---------------------------------------------------hHHHHHHHHHHHhhhhhh
Q 010239 135 LVGALVTALAP---------------------------------------------------DFIIMVVGRFVFGIGIGL 163 (514)
Q Consensus 135 ~~~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~ 163 (514)
+++++++++.+ .+..++++|+++|+|.+.
T Consensus 109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~ 188 (633)
T TIGR00805 109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP 188 (633)
T ss_pred HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence 99999998764 256788999999999999
Q ss_pred hhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc---------------------cchhHHHHhhHH
Q 010239 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------------------AGWRYMYGASTP 222 (514)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------------~~wr~~f~~~~~ 222 (514)
..+...+++.|++|+++|+++++++..+..+|..+|+++++++.+.+ +.||..|++.++
T Consensus 189 ~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~ 268 (633)
T TIGR00805 189 IFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGG 268 (633)
T ss_pred chhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987532 137888999888
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhh
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 302 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
+.++..+.++++|++.+....+. +.+..++ +..+ .... ...... ....++....++++++
T Consensus 269 l~~l~~v~l~~~p~~lp~~~~~~---------~~~~~~~--~~~~-~~~~-~~~~~~-------~~~~~~~~~~~~~Ll~ 328 (633)
T TIGR00805 269 VALLTSIPFFFFPKALPKEGKRV---------NVDVHET--EKLE-KSED-KSRKKN-------SDITKDFPKIIKRLLC 328 (633)
T ss_pred HHHHHHHHHHhCccccCCccccc---------chhhhhh--hccc-cccc-ccchhh-------hhhHHHHHHHHHHHHc
Confidence 88886666666776432100000 0000000 0000 0000 000000 0000111234667788
Q ss_pred hchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHH-HHHHHHHHHHHHHhHhCC--chhhh
Q 010239 303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLGR--RPLLL 378 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--r~~~~ 378 (514)
++.++...+...+... .+..+..|.|.++++ .+. +..+++++.....+ +.+++.+++|+++||++. |+.+.
T Consensus 329 n~~f~~~~l~~~~~~~----~~~~~~~~lP~yl~~~~g~-s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~ 403 (633)
T TIGR00805 329 NPIYMLVILAQVIDSL----AFNGYITFLPKYLENQYGI-SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAY 403 (633)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHH
Confidence 8766555444433333 344667788888875 566 88888888877666 568999999999999984 46666
Q ss_pred hhHHHHHHHHHHHHHhhhc-----------------------c----------C--------------------------
Q 010239 379 GGVSGIVISLFLLGSYYLF-----------------------L----------D-------------------------- 399 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~-----------------------~----------~-------------------------- 399 (514)
.+.++..++.++....+.. . .
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~ 483 (633)
T TIGR00805 404 FAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSV 483 (633)
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCcc
Confidence 6665555554432210000 0 0
Q ss_pred ---C---------------------------cc-h-HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHH
Q 010239 400 ---D---------------------------VP-A-VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV 447 (514)
Q Consensus 400 ---~---------------------------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 447 (514)
. .. . ..++..++..........|.. ..+...+|+++|+-+.|+...+
T Consensus 484 ~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~ 562 (633)
T TIGR00805 484 GTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLC 562 (633)
T ss_pred CCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHH
Confidence 0 00 1 111222222233333344554 6778889999999999999988
Q ss_pred -HHHHHHHHHHhchHhHHh
Q 010239 448 -NFGANALVTFAFSPLKDL 465 (514)
Q Consensus 448 -~~~g~~~~~~~~g~l~~~ 465 (514)
+-+|.+-+|.++|.+.|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 556778899999999985
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=216.08 Aligned_cols=390 Identities=13% Similarity=0.061 Sum_probs=244.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+|++..+.|++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 68999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCc---chhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHh
Q 010239 168 APMYIAETAPTPM---RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLC 244 (514)
Q Consensus 168 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 244 (514)
..++++|++|+++ |++++++++.+.++|.++||++++++.+.. +||+.|++.++..++..+..++.++..+ +.
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~---~~ 198 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR---DI 198 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc---cC
Confidence 9999999998764 888999999999999999999999999877 8999999988665554444333332111 00
Q ss_pred hccccCCccccHHHHHHH----------HHH-HhCCCCCCCCchhHHHH-----HHhhhhccccccchhHHHhhhchhhH
Q 010239 245 AMKRKGDMQDLRESAISC----------LCR-LRGQSIGDSAPTEVDEI-----LTELSYVGEDKEVSLREVFHGKCLKA 308 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (514)
+.+++...+++.+..... ... ....+. .. ....... .........+++.. +..+++. ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 273 (475)
T TIGR00924 199 GSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV-VI-ANILLMTVTLAVIIFFFRLAFKPRLD--AVARNKM-YA 273 (475)
T ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-HH-HHHHHHHHHHHHHHHHHHHHHhccCC--HHHHhHH-HH
Confidence 000000000000000000 000 000000 00 0000000 00000000000000 1111111 11
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC-----chhh--
Q 010239 309 LIIGAGLVLFQQITGQPSVLYYAASILQS-AGFS---AASDATRVSILLGLFKLIMTGLAVLVVERLGR-----RPLL-- 377 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----r~~~-- 377 (514)
.+...+.....+..+.......+.+.++ .+.. .....+.+.+...+..++..++..++..|.+| +...
T Consensus 274 -~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 274 -YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 1111222222222222333333444333 2210 11236778888888888887776655444444 2333
Q ss_pred hhhHHHHHHHHHHHHHhhhcc----CCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHH
Q 010239 378 LGGVSGIVISLFLLGSYYLFL----DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANA 453 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 453 (514)
.+++++.++++..+++..... ..+.++.+. ..++.+.......|...++..+..|++.||+.+|+......+|..
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~-~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~ 431 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL-IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL 431 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH-HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766655321110 123343344 444444555555678889999999999999999999999999999
Q ss_pred HHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 454 LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 454 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+++.+.....+..++...|...++++++..++.++.
T Consensus 432 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 432 LGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999888877776677777777777666666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=221.72 Aligned_cols=329 Identities=15% Similarity=0.092 Sum_probs=228.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhh-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (514)
+|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++...++ +..+++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 6774 4677888888888888877654 46677888889
Q ss_pred hhhhhhhhhHHHHHHhhcC-CCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc------cccchhHHHHhhHHHHHHHHHH
Q 010239 158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------LVAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~~wr~~f~~~~~~~~~~~~~ 230 (514)
+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.. ...+||+.+++.++++++..+.
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9998888888888889987 46889999999999888988877766555542 1238999999999888775444
Q ss_pred -hhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 231 -MWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 231 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
.++.+|+++.. + . . +.++.+....++++++++.++..
T Consensus 190 ~~~~~~e~~~~~---~----~---------------------~--------------~~~~~~~~~~~~~l~~~~~~~~~ 227 (437)
T TIGR00792 190 CFFGTKERYSEI---P----K---------------------N--------------IEKKLSLKQIFKALFKNDQLLIL 227 (437)
T ss_pred HHcCCEecCCCC---C----c---------------------c--------------cccCCCHHHHHHHHhCCHHHHHH
Confidence 44566653200 0 0 0 00000112235566677665554
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
.+...+..... .....+.+++.+.... +....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+
T Consensus 228 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 228 CLAYLFYNLAF----NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL 302 (437)
T ss_pred HHHHHHHHHHH----HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44333333222 2222333444433222 445666777778899999999999999999999999888777776665
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
.+.+. .++.+.......+.+.+.+ ...+..+++.+|..+ ++.+|.++|+.++...++..+++.+.|.+
T Consensus 303 ~~~~~----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 303 IFFFA----GSNLPLILVLIILAGFGQN-FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHc----chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54331 1222333333333322222 223455567777654 46689999999999999999999999999
Q ss_pred HHhhCcc
Q 010239 463 KDLLGAG 469 (514)
Q Consensus 463 ~~~~g~~ 469 (514)
.+..|+.
T Consensus 378 l~~~G~~ 384 (437)
T TIGR00792 378 LGIIGYV 384 (437)
T ss_pred HHHcCCC
Confidence 9988764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=207.90 Aligned_cols=401 Identities=12% Similarity=0.066 Sum_probs=247.0
Q ss_pred ccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh------h
Q 010239 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA------P 145 (514)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~ 145 (514)
+...+.++++ +|+|..+++++.++. ....+++++.|+++||+|||++++++.+++.+++++++++ +
T Consensus 47 sv~s~~L~~~-------lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~ 118 (591)
T PTZ00207 47 NLISGAMQAR-------YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEG 118 (591)
T ss_pred HHHHHHHHHH-------hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 3455677777 999999999998874 4556788899999999999999999999999999999997 6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHH
Q 010239 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225 (514)
Q Consensus 146 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 225 (514)
+++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.. . +|+..|++.+++.+
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~-~~~~~fl~l~vl~~ 195 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D-NTSAYFFFLMSFAL 195 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHH
Confidence 89999999999999999999999999999997 789999999999999999764444444333 2 78998988888887
Q ss_pred HHHHHhh-cc--cCchhHHHHhhccccCCcc------c----------cH---------------------------HHH
Q 010239 226 IMGMGMW-WL--PASPRWLLLCAMKRKGDMQ------D----------LR---------------------------ESA 259 (514)
Q Consensus 226 ~~~~~~~-~~--~e~~~~~~~~~~~~~~~~~------~----------~~---------------------------~~~ 259 (514)
+..++.+ ++ |+.+++..++++.++.+.. . +. ...
T Consensus 196 vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~ 275 (591)
T PTZ00207 196 VVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNF 275 (591)
T ss_pred HHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 7544443 33 3333332111100000000 0 00 000
Q ss_pred HH---H--H--H-----------HHhCCCCCCCCchhH----H---HHHHhhh-------h-ccccccchhHHHhhhchh
Q 010239 260 IS---C--L--C-----------RLRGQSIGDSAPTEV----D---EILTELS-------Y-VGEDKEVSLREVFHGKCL 306 (514)
Q Consensus 260 ~~---~--~--~-----------~~~~~~~~~~~~~~~----~---~~~~~~~-------~-~~~~~~~~~~~~~~~~~~ 306 (514)
.. . + - .....+..++.+.+. + +...+.. + ...+...++++.+++..+
T Consensus 276 ~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~ 355 (591)
T PTZ00207 276 KVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARL 355 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhH
Confidence 00 0 0 0 000000000000000 0 0000000 0 001111256666666666
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc-CCCCCch-hHHHHHHHHHHHHHHHHHHHHHHhHhCCch--------h
Q 010239 307 KALIIGAGLVLFQQITGQPSVLYYAASILQSA-GFSAASD-ATRVSILLGLFKLIMTGLAVLVVERLGRRP--------L 376 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~--------~ 376 (514)
|.+++..++.... -......+.++.+.. |.....+ ...+.++.++.+.+|++..|.+.....+|+ .
T Consensus 356 Wll~~~~~cg~g~----gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~ 431 (591)
T PTZ00207 356 WCLLWSIFCCVGA----HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITI 431 (591)
T ss_pred HHHHHHHHHhhCc----hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhH
Confidence 6665544444333 234445667777777 5412221 223788899999999999998873332222 2
Q ss_pred hhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHH-
Q 010239 377 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALV- 455 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~- 455 (514)
.+....++.++.+++.+. .+.....+..++.+.+++..+ ++....+.|+|. ++-|+-+-+.....-+|+.+.
T Consensus 432 ~l~~~~~~~~~~lll~~~-----~p~~~L~~~~~lvg~~~G~~~-~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n 504 (591)
T PTZ00207 432 ALFIPSVCIITMLTLFLT-----LPKAALPLPYFIAAFANGFMA-ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLN 504 (591)
T ss_pred HHHHHHHHHHHHHHHHHH-----CCccHhHHHHHHHHHHhhHhH-HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHH
Confidence 222222233333333321 111233334444444444443 455578999999 888888888777777777776
Q ss_pred HHhchHhHHhh----------C---cchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 456 TFAFSPLKDLL----------G---AGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 456 ~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
..++|.++|+. | ++.+|++++++++++.+....+..+++
T Consensus 505 ~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 505 RLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 66788888753 2 455889999999888887665554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=209.22 Aligned_cols=389 Identities=14% Similarity=0.105 Sum_probs=224.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+.++|+++|++.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 89999999999988887777777899999999 5999999999999999999998874 567778899999999999999
Q ss_pred HHHHHHhhcCCCCc--chhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc----ccCchhH
Q 010239 167 AAPMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW----LPASPRW 240 (514)
Q Consensus 167 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~----~~e~~~~ 240 (514)
...+++.|++|+++ |..++++++.+.++|..+||.+++++.+.. |||+.|++.++..++..+..++ ++|.++
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~- 209 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQRWVKQYGS- 209 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhHHHhccCCC-
Confidence 99999999998654 456889999999999999999999999887 9999999987655553333222 222110
Q ss_pred HHHhhccccCCccccHHHHHHH-----HHHHhCCCCCCCCchhHHH---HHHhhhhccccccchhHHHhhhchhhHHHHH
Q 010239 241 LLLCAMKRKGDMQDLRESAISC-----LCRLRGQSIGDSAPTEVDE---ILTELSYVGEDKEVSLREVFHGKCLKALIIG 312 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (514)
+...++.|..+........ .......+. +....... ........... ....+..+++......
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-- 280 (500)
T PRK09584 210 ---KPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ--EIARMALGVVALGIVVIFGKEA--FAMKGAARRKMIVAFI-- 280 (500)
T ss_pred ---CCCccccchhhHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHH--
Confidence 0000001111100000000 000000000 00000000 00000000000 0000111111111111
Q ss_pred HHHHHHHHhhChhHHHHhHHHHHHH-cC--C-CCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc----hhhhhhHHHH
Q 010239 313 AGLVLFQQITGQPSVLYYAASILQS-AG--F-SAASDATRVSILLGLFKLIMTGLAVLVVERLGRR----PLLLGGVSGI 384 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r----~~~~~~~~~~ 384 (514)
.++.....+..+.....+...+..+ .. . .-....+.+.+...+..++..++.+++-+|.++| +.+.+++++.
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~ 360 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHH
Confidence 1111111111111111121111111 11 0 0122366677777777777777776665665544 5677778888
Q ss_pred HHHHHHHHHhhhccC---CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchH
Q 010239 385 VISLFLLGSYYLFLD---DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 461 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 461 (514)
+++++.+........ ..+....+...++.+.......|....++.+..|++.||+++|+......+|..++..+.+.
T Consensus 361 ~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~ 440 (500)
T PRK09584 361 SGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL 440 (500)
T ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777655322111 01122344444455555566678888899999999999999998877766666666655542
Q ss_pred hH----------HhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 462 LK----------DLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 462 l~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
.. ...++...|...++++++..++.+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 441 MAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred hccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1113556777777666554444443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=191.40 Aligned_cols=367 Identities=17% Similarity=0.151 Sum_probs=256.7
Q ss_pred cccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHhhh
Q 010239 67 DIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-RRRELILAALLYLVGALVTALAP 145 (514)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~ 145 (514)
..+...|.++..-++ .|.|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........+
T Consensus 17 ~~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~ 89 (400)
T PF03825_consen 17 AYGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS 89 (400)
T ss_pred HHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666 7999999999999999999999999999999986 57888888888888777778888
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHh-hhhhcccc--cchhHHHHhhHH
Q 010239 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGI-GSLLVDLV--AGWRYMYGASTP 222 (514)
Q Consensus 146 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~--~~wr~~f~~~~~ 222 (514)
+++.+++..++..+......|...++..+... +++.-.|-.....++|.+++... +..+.... .+..+.+++.+.
T Consensus 90 ~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 167 (400)
T PF03825_consen 90 SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAI 167 (400)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 99999998888898888899999999888875 34555666666777777777543 22222221 133456667776
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhh
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 302 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
.+++.....+.+|+.|+....++ ..++....+..+++|
T Consensus 168 ~~~ll~~~~l~lp~~~~~~~~~~------------------------------------------~~~~~~~~~~~~llk 205 (400)
T PF03825_consen 168 LSLLLAGFALFLPKTPPKRSAKE------------------------------------------SVKKLLGLDALKLLK 205 (400)
T ss_pred HHHHHHHHHHhCCCCccccccCC------------------------------------------CcccccchHHHHHhc
Confidence 66666666666787763000000 001111223456788
Q ss_pred hchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHH
Q 010239 303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 382 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 382 (514)
+|.....++..++.... ......|.+.++++.|..+....+...++..+.+++.-...+++.+|+|.|+++.++.+
T Consensus 206 ~~~~~~Fll~~~l~~~~----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~ 281 (400)
T PF03825_consen 206 NPRFLVFLLAAFLIGIS----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV 281 (400)
T ss_pred CccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 87665554444433332 33556677888888883266677888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcchHHHHHHH----HHHHHhhcccccccceeeccccchhhhhhHHHHHHHH-HHHHHHHHHH
Q 010239 383 GIVISLFLLGSYYLFLDDVPAVAVVALL----LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTF 457 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~ 457 (514)
..++=..+++.. .++.+....... +.+..++... .....++.+..|++.|+++.++.+.. ..+|..+|..
T Consensus 282 ~~~vR~~l~a~~----~~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 282 AYAVRWLLYAYF----SDPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred HHHHHHHHHHHh----cCCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 988888777642 223333222222 2344444433 34447899999999999999999886 6789999999
Q ss_pred hchHhHHhhCcch------hhHHHHHHHHHHHHHhCCCCCCC
Q 010239 458 AFSPLKDLLGAGI------LFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 458 ~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
+.|++.|+.|.+. .+.+.+++.++..++.+++.|++
T Consensus 357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999988554 34445555555555555544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=189.66 Aligned_cols=371 Identities=16% Similarity=0.114 Sum_probs=238.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHH-HHHHHHHHHHHHhhhhHH---------------
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRELILA-ALLYLVGALVTALAPDFI--------------- 148 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~--------------- 148 (514)
+|++..+.+++..+..+...+.+++.|.++| |+||||.++++ .....++.++.++++++.
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 7999999999999999999999999999999 59999988874 666667777777776643
Q ss_pred --HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcc--hhHHhHHHHHHHHHHHHHHHhhhhhc--ccc------------
Q 010239 149 --IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMR--GQLISLKEFFIVLGMVGGYGIGSLLV--DLV------------ 210 (514)
Q Consensus 149 --~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~--~~~------------ 210 (514)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++..- +..
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 233333445568888888999999999998865 57999999999999999999998751 110
Q ss_pred cchhHHHHhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhc
Q 010239 211 AGWRYMYGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYV 289 (514)
Q Consensus 211 ~~wr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (514)
.+.|+.|++.+++.++. .+..+..+|.|.... + + ...++ .+ + . +
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~-----~--~~~~~-------~~--~-~----------------~ 238 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPLIGS--D-----D--FINSE-------AA--P-P----------------S 238 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--c-----c--chhhh-------cc--c-c----------------c
Confidence 15789999988887774 444555788653100 0 0 00000 00 0 0 0
Q ss_pred cccccchhHHHhhhc-hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH--cCCCCCc-----h----hHHHHHHHHHHH
Q 010239 290 GEDKEVSLREVFHGK-CLKALIIGAGLVLFQQITGQPSVLYYAASILQS--AGFSAAS-----D----ATRVSILLGLFK 357 (514)
Q Consensus 290 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~----~~~~~~~~~~~~ 357 (514)
+.+....++++++.- ...+.+.-.++..++.+.++..+.+|.+.+..+ ++..+.. + ..+......+..
T Consensus 239 ~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~ 318 (477)
T TIGR01301 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVL 318 (477)
T ss_pred ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 000111233333321 112222222233333333334445555555442 2221111 1 224445556666
Q ss_pred HHHHHHHHHHHhHhCC-chhhhhhHHHHHHHHHHHHHhhhccCC-------------c---chHHHHHHHHHHHHhhccc
Q 010239 358 LIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDD-------------V---PAVAVVALLLYVGCYQLSF 420 (514)
Q Consensus 358 ~~~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~ 420 (514)
.+.+++..++.+|+|+ |+....+.++.++++....+.-....+ + .+..+..+.+++... ...
T Consensus 319 ~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~-A~~ 397 (477)
T TIGR01301 319 GITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL-AIT 397 (477)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH-HHH
Confidence 6777788889999985 677688877777777766533211000 0 133333444444333 334
Q ss_pred ccccceeeccccch--hhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC--cchhhHHHHHHHHHHHHHhCCCCCCCCC
Q 010239 421 GPIGWLMISEVFPL--RLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSLAFIFXXXXXXXX 495 (514)
Q Consensus 421 ~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (514)
..++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++.++.++..|+.+.
T Consensus 398 ~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 398 YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 56778999999884 456999999999999999999998898777666 3446677777788888888877777653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-24 Score=178.10 Aligned_cols=395 Identities=15% Similarity=0.135 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHH
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRREL 127 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~ 127 (514)
++..+++..++..|-..+.....+....+...| .+++.++..++.++|.....+-+.++|++.|| +|.|..-
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt 113 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD-------SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT 113 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcc-------cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH
Confidence 445556667777777777777777788888888 89999999999999999999999999999996 7888766
Q ss_pred HHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhh
Q 010239 128 ILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS 204 (514)
Q Consensus 128 ~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 204 (514)
++-+.+..+|.++.+. .+.+|.+.++||+.|+|.-...++-+.+..-||..|+.+.++|+..+..-+|..+-..+.+
T Consensus 114 ii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~ 193 (459)
T KOG4686|consen 114 IILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMP 193 (459)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecH
Confidence 6666666777776654 6889999999999999999899999999999999999999999999999999988888877
Q ss_pred hhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 010239 205 LLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT 284 (514)
Q Consensus 205 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
++.+.. +--.+=.-...+++...+-......+-.-....+ -.++.+++.+.+-++..
T Consensus 194 ~ly~~~-~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg--------~~D~rAerilh~e~g~~-------------- 250 (459)
T KOG4686|consen 194 FLYDTM-GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG--------LSDDRAERILHLEEGFL-------------- 250 (459)
T ss_pred HHHHHH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHhhhcCcc--------------
Confidence 776643 1000000000000000000000000000000000 00111222221111111
Q ss_pred hhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHH
Q 010239 285 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGL 363 (514)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
.+.++..-..-++ +.+|.+.+...+++...+ -+....|.++ +++|+ ++..++.+.+.......+.+++
T Consensus 251 -----Ge~pkLtdv~~f~-ppfw~~~iicv~yyva~f----PFi~lg~~fF~~rfGl-S~~~a~~i~s~vy~Isav~spv 319 (459)
T KOG4686|consen 251 -----GEEPKLTDVNTFY-PPFWVLVIICVLYYVAWF----PFITLGPMFFQKRFGL-SAVSAGNILSTVYGISAVLSPV 319 (459)
T ss_pred -----cCCcccccccccC-ccHHHHHHHHHHHHHHHH----HHhhhhHHHHHHhhCC-Chhhccchhhhhhhhhhhhhhh
Confidence 1111111111122 233433333333333221 2233445444 55777 8888999999999999999999
Q ss_pred HHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHH
Q 010239 364 AVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 443 (514)
Q Consensus 364 ~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 443 (514)
.|.++||+|++-..+.+..+..+..-.+..+ +.+.....+.+.+..+.+.. ...|..++.++|.+..|++.|.
T Consensus 320 fg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F------t~lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 320 FGAISDKYGFNLWWVASACILTLLGHSGLFF------TFLSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred HHHhHhhhcceehhHHHHHHHHHHHhhhHHh------hhccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHH
Confidence 9999999999877766554444333322221 22223333333443333322 2345677889999999999999
Q ss_pred HHHHHHHHHHHHHHhchHhHHhhC-cch---hhHHHHHHHHHHHHHhCCCCC
Q 010239 444 AVLVNFGANALVTFAFSPLKDLLG-AGI---LFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 444 ~~~~~~~g~~~~~~~~g~l~~~~g-~~~---~~~~~~~~~~~~~~~~~~~~~ 491 (514)
++.+.++|-.+.|.+.|.+.|..| +.+ .|+..+.+.+.+..+.+..-+
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 999999999999999999999876 332 345555566666666555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=199.29 Aligned_cols=378 Identities=12% Similarity=-0.041 Sum_probs=244.5
Q ss_pred HHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHH
Q 010239 57 PALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAA 131 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~ 131 (514)
....++..|..........+.+.++ +|++.++++...+...+...+-.+ +|+++||++ ||+.++++.
T Consensus 31 ~~~~y~~qGl~~l~~~~~~~~l~~~-------lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 31 GLQVLFVKGIAGLMRLPLSPMLTDD-------LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred HHHHHHHhhHHHHhhhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 3344566677644444556666666 899999999999999999999666 999999998 777778877
Q ss_pred HHHH-HHHHHHHhhhhHHHHH-HHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHH---hHHHHHHHHHHHHHHHhhhhh
Q 010239 132 LLYL-VGALVTALAPDFIIMV-VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLI---SLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 132 ~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l 206 (514)
++.+ +.....+..++..... +.+++.+++.+...++..++..|..+ +++.... ++......+|.++++.+++.+
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l 181 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL 181 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence 7763 4433344445544444 48899999999999999999999998 5554433 333344558999999999999
Q ss_pred cccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhh
Q 010239 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTEL 286 (514)
Q Consensus 207 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (514)
.+.. +||..|++.+++.++..+..++++|++.... +...+ +.... ..... ...
T Consensus 182 ~~~~-~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~------~~~~~-~~~~~----------------~~~~~---~~~ 234 (468)
T TIGR00788 182 LDKT-LTRILFLITAALLLLQLFVSNLSKERRAFVR------PRIGT-YLEMN----------------MALLT---LGV 234 (468)
T ss_pred HHhc-CcchHHHHHHHHHHHHHHHHHhccccccccc------ccccc-cchhh----------------hhhhh---hhH
Confidence 9887 9999999998888877666667787531000 00000 00000 00000 000
Q ss_pred hhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010239 287 SYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVL 366 (514)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 366 (514)
....++...+.++.++++..+..++..++.+. ...+. ....+. ...+..|+ ++...|......+++.+++..+.++
T Consensus 235 ~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~~-~~~~f~-~~~~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~~ 310 (468)
T TIGR00788 235 LANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPGA-SGSVFC-ATTQCLPG-GPSFSGMSKVVGNLGSLCGVGGYDR 310 (468)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCCC-CceeEE-EEcccCCC-CcchhhhHHHHHHHHHHHHHHHHHH
Confidence 00000111223344555544443332222111 11111 111111 11235677 8899999999999999999999999
Q ss_pred HHhHhCCchhhhhhHHHHHHHHHHHHHhh--hc--c-CCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHH
Q 010239 367 VVERLGRRPLLLGGVSGIVISLFLLGSYY--LF--L-DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGL 441 (514)
Q Consensus 367 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 441 (514)
+.+|++.|+++.++.++.+++........ +. . ....+.......+...+.+..+.+. ..++.+..|++.+|+.+
T Consensus 311 ~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~ 389 (468)
T TIGR00788 311 FLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVF 389 (468)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHH
Confidence 99999999999888887777664432110 00 0 0112222333334444444555555 48899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchHhHHhhC-----cchhhHHH
Q 010239 442 SVAVLVNFGANALVTFAFSPLKDLLG-----AGILFYAF 475 (514)
Q Consensus 442 g~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~ 475 (514)
++.+++.++|..+++.+.|.+.+..| ++..+...
T Consensus 390 al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 390 ALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 99999999999999999999999888 55444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=178.65 Aligned_cols=402 Identities=15% Similarity=0.106 Sum_probs=276.5
Q ss_pred ccchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010239 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 123 (514)
.+-.+++|++++..++-.+.+++.-..+++.......- ++ +....-|+.-+|++.+....+++-|+.||+|-
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-------Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL 108 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-------YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL 108 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-------hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch
Confidence 34566778888888888887777766666655555444 77 77888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh------hHH--HHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHH
Q 010239 124 RRELILAALLYLVGALVTALAP------DFI--IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195 (514)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 195 (514)
|..++++..+.++|..+-..+. .++ ....+..+.+.++-........+..-||+++||..+..+-.++..+|
T Consensus 109 R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 109 RTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence 9999999999999999877753 345 77789999999988888887888999999999999999999999999
Q ss_pred HHHHHHhhhhhcccc-----cchhH--HHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHh
Q 010239 196 MVGGYGIGSLLVDLV-----AGWRY--MYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLR 267 (514)
Q Consensus 196 ~~~g~~~~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (514)
.++|.++...+..+. ..|-. .|+...+++.+.++ ..+..++.|+.-.... ..
T Consensus 189 vavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s-----------~~--------- 248 (480)
T KOG2563|consen 189 VAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS-----------QA--------- 248 (480)
T ss_pred HHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh-----------Hh---------
Confidence 999999999887632 14544 35544444444322 2233344333100000 00
Q ss_pred CCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhH
Q 010239 268 GQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDAT 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (514)
.....+-..+.++.++++.+....++....... ++.....+...+...|+ +...+|
T Consensus 249 -------------------~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~----F~~l~~~l~~~l~~sgY-~~~~aG 304 (480)
T KOG2563|consen 249 -------------------ALQDASFPKSIKSCFKNRQFIILAICYGIGLGL----FNSLSTLLNLALCPSGY-EGVFAG 304 (480)
T ss_pred -------------------hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHH----HHHHHHHhhhccccccC-Cccccc
Confidence 000112344677788887766555544444332 22333333323344555 557899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhCCch-hhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccce
Q 010239 348 RVSILLGLFKLIMTGLAVLVVERLGRRP-LLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWL 426 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (514)
.......+++++++++.|.+.||.+.-+ .+++......++.+.+.. ... .....+.+.......+.+..+..|+..-
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~-~t~-~~~~~viv~~t~~~~g~~~~~~~Pig~E 382 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLT-CTL-FLGDSVIVFTTCGLLGFFGTGYLPIGFE 382 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhc-cCCceEehhhhHHHHHHhhcCCCCccee
Confidence 9999999999999999999999998744 344433333333222211 111 1222223333444556666677788888
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC----cchhhHHHHHHHHHHHHHhCCCCCCCCCCchh
Q 010239 427 MISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG----AGILFYAFGVIAVLSLAFIFXXXXXXXXSFQR 499 (514)
Q Consensus 427 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (514)
+..|..-|..-++..|+.+..+++-+.+-.++.+...+..+ +...-+.....++++..+..+++++.++++.+
T Consensus 383 lgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 383 LGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred eeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 88998777888999999999999999999999999988777 44445555666666666666656554444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=195.65 Aligned_cols=335 Identities=16% Similarity=0.068 Sum_probs=213.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHh----hhhh-hHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGR-RRELILAALLYLVGALVTALAP------DFIIMVVGRFVF 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~ 157 (514)
+|+++..+|.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++.+++...+ .+..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6698 5666778888787766664433 134566666777
Q ss_pred hhhhhhhhhHHHHHHhhcC-CCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc------cccchhHHHHhhHHHHHHHHH-
Q 010239 158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD------LVAGWRYMYGASTPLAVIMGM- 229 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~~wr~~f~~~~~~~~~~~~- 229 (514)
+++.....+.-.+++.|.. ++++|.+..++-..+.++|..+.+.+...+.+ ...+|+....+.+++.++..+
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999998 58899999988777777776665555443321 112577777777777666433
Q ss_pred HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 230 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
..+..+|.++....+. .++++.+.+..++.+++++.++..
T Consensus 197 ~~~~~~e~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~n~~~~~l 236 (473)
T PRK10429 197 TLRNVHEVYSSDNQVS----------------------------------------AEGSHLTLKDIVALIYKNDQLSCL 236 (473)
T ss_pred HHcCceecCCcccccc----------------------------------------ccccCCCHHHHHHHHhcCHHHHHH
Confidence 3333566432000000 000011112233445566554444
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
+....+... .......+.+++.+.... +....+.+.....+..+++.++.+++.||+|+|+.+..+..+..++.+
T Consensus 237 l~~~~~~~~----~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~ 311 (473)
T PRK10429 237 LGMALAYNI----ASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG 311 (473)
T ss_pred HHHHHHHHH----HHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 333322222 122333344444444433 444556666677788899999999999999999998877776555554
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
.+...........+..++...+.+.+.+. ..+..+++.+|..+ .+..|..+|...+...++..+++.+.|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 312 VLLLMGLAAPHNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322111223333333333333333332 33455577788755 34456689999999999999999999999
Q ss_pred HHhhCcc
Q 010239 463 KDLLGAG 469 (514)
Q Consensus 463 ~~~~g~~ 469 (514)
.+..||.
T Consensus 391 l~~~Gy~ 397 (473)
T PRK10429 391 LGLIGYV 397 (473)
T ss_pred HHHcCCC
Confidence 9887763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=178.88 Aligned_cols=364 Identities=13% Similarity=0.057 Sum_probs=210.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+|++..+.+.+.+.+.....++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 799999999999999999999999999999999 999999999999999988776543 223344455555566777778
Q ss_pred HHHHHHhhcCCCC--cchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHh
Q 010239 167 AAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLC 244 (514)
Q Consensus 167 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 244 (514)
...++++|.+|++ +|..++++...+.++|..++|.+.+++.+.. |||+.|.+.++..++..+..++..+... ...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~l~--~~~ 196 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRHFT--HTR 196 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhhhc--cCC
Confidence 7889999999875 6999999999999999999999999998877 9999999876644443333322211100 000
Q ss_pred hccccCCccccHHHHHH------HHH----HHhCCCCCCCCchhHHHH--HHh---hhhccccccchhHHHhhhch--hh
Q 010239 245 AMKRKGDMQDLRESAIS------CLC----RLRGQSIGDSAPTEVDEI--LTE---LSYVGEDKEVSLREVFHGKC--LK 307 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~--~~ 307 (514)
+.+++.. +++ +.... ... ........+......--. ... .-.....+ .+..+ |++. ..
T Consensus 197 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e--r~r~~~~~ 271 (493)
T PRK15462 197 GVNKKVL-RAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQ--RKELGLIV 271 (493)
T ss_pred CCCCCCc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHH--HhhHHHHH
Confidence 0000000 000 00000 000 000000000000000000 000 00000000 00000 1110 00
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHH--cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC--ch-----hhh
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQS--AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR--RP-----LLL 378 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--r~-----~~~ 378 (514)
.+.+...+++....-....+..|.....+. .|+ ...+.+..++..+..++.+++.+++-.|..+ |. =..
T Consensus 272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~--~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa 349 (493)
T PRK15462 272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGY--TVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA 349 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcce--eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 111111111111111111222222111111 122 2346778888888888888888888777633 21 155
Q ss_pred hhHHHHHHHHHHHHHhhhccC---CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHH-HHHHHH
Q 010239 379 GGVSGIVISLFLLGSYYLFLD---DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN-FGANAL 454 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~ 454 (514)
+++++++++++.+.+...... ..+..+++...++......+..|+..+.++++.|++.+|..+|+..... .++..+
T Consensus 350 ~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 350 LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776654322211 1233445555556667777888999999999999999999999986633 455555
Q ss_pred HHHhchHh
Q 010239 455 VTFAFSPL 462 (514)
Q Consensus 455 ~~~~~g~l 462 (514)
+..+.+..
T Consensus 430 ~g~~~~~~ 437 (493)
T PRK15462 430 AGVIADQT 437 (493)
T ss_pred HHHHHHHh
Confidence 55554433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=188.03 Aligned_cols=327 Identities=15% Similarity=0.027 Sum_probs=213.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhh-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (514)
+|++..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..++..++....++ +..+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 7874 5566777777777766555443 45666667777
Q ss_pred hhhhhhhhhHHHHHHhhcC-CCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc------ccchhHHHHhhHHHHHHHHHH
Q 010239 158 GIGIGLAMHAAPMYIAETA-PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------VAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~~wr~~f~~~~~~~~~~~~~ 230 (514)
+.+.......-.++.+|+. ++++|++..++...+..+|..+++.+...+... ..+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777889999998 557899888888888888877777655443321 127888888888887765443
Q ss_pred hh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 231 MW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 231 ~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
.+ ..+|.++. + + .++.+...+.+.+++++.++..
T Consensus 200 ~~~~~~e~~~~----~---~--------------------------------------~~~~~~~~~~~~~~~n~~~~~l 234 (444)
T PRK09669 200 CFFMTKERYTP----E---V--------------------------------------DNSSSVWKDLKLLLGNSQWRIM 234 (444)
T ss_pred HhCCeEEecCC----C---C--------------------------------------cCCCCHHHHHHHHhCCchHHHH
Confidence 33 34443210 0 0 0011122346667788776665
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
.+...+...... ......+++.+.... .....+.......+..+++.++.+++.||+|+|+.+..+..+..++.+
T Consensus 235 ~~~~~~~~~~~~----~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 235 FIFNVVLLTAVV----TRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHH----HHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 544333322221 111222233222222 333444555566677888899999999999999988877665554333
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
.+.. ...++.+..++...+.+.+. ....+..+++++|..+ .+..|..+|+.++...+|..+++.+.|.+
T Consensus 310 ~~~~---~~~~~~~~~~~~~~i~g~~~-~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 310 LIFF---IPPSNVWLIFALNILFNFIQ-NLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHH---hCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 11233333333333333333 3344666788888775 33456778999999999999999999999
Q ss_pred HHhhCcc
Q 010239 463 KDLLGAG 469 (514)
Q Consensus 463 ~~~~g~~ 469 (514)
.+..|+.
T Consensus 386 l~~~Gy~ 392 (444)
T PRK09669 386 LAWVDYV 392 (444)
T ss_pred HHHcCCC
Confidence 9988874
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=181.04 Aligned_cols=354 Identities=16% Similarity=0.137 Sum_probs=228.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHHH-HHHhh----hhH-HHHHHHHHHHhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA--LLYLVGAL-VTALA----PDF-IIMVVGRFVFGIG 160 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~--~~~~~~~~-~~~~~----~~~-~~l~~~r~l~G~~ 160 (514)
.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+ ++...+.+ ...+. .|+ ...+++-+..|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999666544332 22222222 22222 232 2334444455666
Q ss_pred hhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcc-cCchh
Q 010239 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPR 239 (514)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~ 239 (514)
.....|+.-+++.++. ++.+.-.|-.-...++|.+++..++|.+.+. +-+..||+....+++..++.++. |+.++
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 6666777777766664 3446667778888999999999999999874 56788888777666654444443 33322
Q ss_pred HHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHH
Q 010239 240 WLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQ 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (514)
.....+ .+ . .++++.+.++..+++|++++|...+........
T Consensus 194 ~~~~~~----~~-------------------------~---------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~ 235 (412)
T PF01306_consen 194 QAEVAD----AL-------------------------G---------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI 235 (412)
T ss_dssp SS-SST----TS-------------------------S---------S------HHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred hhhhhc----cc-------------------------c---------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 100000 00 0 000111122345677777777655443332222
Q ss_pred HhhChhHHHHhHHHHHHHcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhh
Q 010239 320 QITGQPSVLYYAASILQSAGFS---AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYL 396 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+..+....+.++....-. +....|.+.+...+.+++.-.+.+++.+|+|.|+.++++..++.+-....++
T Consensus 236 ----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~--- 308 (412)
T PF01306_consen 236 ----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF--- 308 (412)
T ss_dssp ----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred ----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh---
Confidence 223333344444433220 3356888899999999999999999999999999999999999888887765
Q ss_pred ccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHH-HHHHHHHHHHHHHhchHhHHhhCcchhhHHH
Q 010239 397 FLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA-VLVNFGANALVTFAFSPLKDLLGAGILFYAF 475 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 475 (514)
.++++.....-.+-+.-+.....+. .-|+.+.+|++..++...+. +...+++.++.+.+.|.++|+.|++.+|+++
T Consensus 309 --~~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylim 385 (412)
T PF01306_consen 309 --ATNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIM 385 (412)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHH
Confidence 3455555555555554444444333 47899999999999999886 4668999999999999999999999899998
Q ss_pred HHHHHHHHHHhCCCCCCCC
Q 010239 476 GVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~ 494 (514)
+.+.++..++..+..++.+
T Consensus 386 g~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHheeeecCCC
Confidence 8887777766665554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-20 Score=168.92 Aligned_cols=278 Identities=15% Similarity=0.087 Sum_probs=191.9
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc-----------
Q 010239 142 ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV----------- 210 (514)
Q Consensus 142 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------- 210 (514)
+...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+..+++|..++|.+++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999999877321
Q ss_pred ----cchhHHHHhhHHHHHHHHHHhhc--ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 010239 211 ----AGWRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILT 284 (514)
Q Consensus 211 ----~~wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
.+|+++|++.+.+.++..+.+.+ +||.++. + ++ +
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~----~-----------~~----------------------~--- 124 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA----D-----------VA----------------------R--- 124 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc----c-----------cc----------------------c---
Confidence 27999999777776654444444 3443110 0 00 0
Q ss_pred hhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHc---CCCCCchhHHHHHHHHHHHHHHH
Q 010239 285 ELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA---GFSAASDATRVSILLGLFKLIMT 361 (514)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
. ..++....++.++++..+.. .+..++..+.......|.+.|+.+. +. +..+++...+....+.++|+
T Consensus 125 ~----~~~~~~~~~~~~~~~~~~l~----~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~-s~~~a~~~~s~~~~~~~iGr 195 (310)
T TIGR01272 125 V----SSGDTTQKTSAFQFTHLVLG----ALGIFVYVGAEVSAGSFLVNFLSDPHALGL-PEDQAAHFTAYTWGGAMVGR 195 (310)
T ss_pred c----ccccccchhhHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 0 00000011223443333322 2333333333446667888888653 56 78889999999999999999
Q ss_pred HHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHH
Q 010239 362 GLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGL 441 (514)
Q Consensus 362 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 441 (514)
++.+++.||+++|+.+..+..+..++.+++.. .+. ........+.+.+.+ ...|...+...+..|+ ..+++.
T Consensus 196 ~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~~-~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~-~~~~as 267 (310)
T TIGR01272 196 FIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----THG-YVAMWFVLALGLFNS-IMFPTIFSLALNALGR-HTSQGS 267 (310)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cCC-HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh-hhhhhH
Confidence 99999999999999887777666665543322 112 222233333333333 3446666777787874 466777
Q ss_pred HHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHH
Q 010239 442 SVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 477 (514)
Q Consensus 442 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 477 (514)
++. ....+|+++.|.+.|.+.|..|.+..+++...
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 775 56789999999999999999998877764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-19 Score=168.90 Aligned_cols=353 Identities=16% Similarity=0.121 Sum_probs=240.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhhhhhHHH
Q 010239 93 SVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL-AALLYLVGALVTALA--PDFIIMVVGRFVFGIGIGLAMHAAP 169 (514)
Q Consensus 93 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~ 169 (514)
.+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+++..+. .+++...+.-++.-++.+......+
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999987665544 555555566666663 3455555666666778888899999
Q ss_pred HHHhhcCCCCcc--------------------------hhHHhHHHHHHHHHHHHHHHhhhhhcccc-------cchhHH
Q 010239 170 MYIAETAPTPMR--------------------------GQLISLKEFFIVLGMVGGYGIGSLLVDLV-------AGWRYM 216 (514)
Q Consensus 170 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------~~wr~~ 216 (514)
+++.|..+++++ ++..+.-.+...+|.++.-.+.-.+.... .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 89999988888899888877766654322 135888
Q ss_pred HHhhHHHHHHH-HHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccc
Q 010239 217 YGASTPLAVIM-GMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEV 295 (514)
Q Consensus 217 f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (514)
+.+.++.-++. ....+++||.|+.. + .+. ........ -++-..
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~---~--~~~----~~~~~~~g---------------------------~~~l~~ 272 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPR---P--LPS----GSSYLRFG---------------------------FKRLWR 272 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC---C--CCc----chhHHHHH---------------------------HHHHHH
Confidence 88888887664 44555677775410 0 000 00000000 000111
Q ss_pred hhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc
Q 010239 296 SLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 374 (514)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 374 (514)
.++++.|.+.... +.+.++...-+.+.+......+.. +.++ +..+...+.....+.+++|+++.+++.||+|.|
T Consensus 273 t~k~~~~~~~~~~----fLia~~l~~dg~~ti~~~~~i~a~~~lg~-s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 273 TFKEIRKLRQLFL----FLIAYFLYSDGVNTIISFAGIYATEVLGM-STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2233333333223 333333333445555555555554 6777 888899999999999999999999999999998
Q ss_pred --hhhhhhHHHHHHHHHHHHHh---hhc-cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHH
Q 010239 375 --PLLLGGVSGIVISLFLLGSY---YLF-LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVN 448 (514)
Q Consensus 375 --~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 448 (514)
+++..+.+...+..+. +++ ... ...+.+...+ ..++.+.+..+..+..-++.+|+.|+++.+..+|+....+
T Consensus 348 ~~~~l~~~l~~~~~i~~~-g~~G~~~~~~g~~~~~~f~~-~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 348 TKRTLLISLILWIIIPLY-GLFGFWPSFFGLKSPWEFWV-LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHhhhcccCcccHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 6666655544222221 111 000 1233444333 3344455555566777799999999999999999999999
Q ss_pred HHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCC
Q 010239 449 FGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 449 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 488 (514)
...+.+||.++|.+.+..| .+..+....++.+++.++.+.
T Consensus 426 k~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987 777888888888888777754
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=181.94 Aligned_cols=329 Identities=18% Similarity=0.198 Sum_probs=240.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHH-HHHHHHHHHHHHHHHHhh-h-------hHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD----ILGRRRE-LILAALLYLVGALVTALA-P-------DFIIMVVGRF 155 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~ 155 (514)
+|+++..+|++..+..+..++..|+.|.++| |+||||. +++|....+++.+++... + ....+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 8997655 556888888888877766 4 2334577777
Q ss_pred HHhhhhhhhhhHHHHHHhhcCC-CCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc------chhHHHHhhHHHHHHHH
Q 010239 156 VFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA------GWRYMYGASTPLAVIMG 228 (514)
Q Consensus 156 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~------~wr~~f~~~~~~~~~~~ 228 (514)
+..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+.+..+ +|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7799999999999999999997 5789999999999999998777777776664322 69999999988888754
Q ss_pred HHh-hcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhh
Q 010239 229 MGM-WWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK 307 (514)
Q Consensus 229 ~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (514)
+.. +..+|.++.. +.+.++.+-+..++++++++.++
T Consensus 192 ~i~~~~~ke~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 192 LITFFFVKERSVEV-------------------------------------------TEQEKKISLRDSLRSLFRNRPFR 228 (428)
T ss_pred hhhhheeeeccccc-------------------------------------------cccccccccccchhhhcccchHH
Confidence 444 4466621100 00001223344577788887766
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 387 (514)
.......+...... ......+++.+..-. +....+.......+..+++.++.++++||+|+|+.+..+..+.+++
T Consensus 229 ~l~~~~~~~~~~~~----~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 229 ILLLAFFLQWLAFA----LMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred HHHHHHHHHHhhhh----hhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 66555544444332 333344455444333 3356777788889999999999999999999999999999888888
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccch-------hhhhhHHHHHHHHHHHHHHHHHHhch
Q 010239 388 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL-------RLRGRGLSVAVLVNFGANALVTFAFS 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~~~~~~~g 460 (514)
.+++.+.. .++.+..++...+.+.+.+ ......+++.+|..+. +..|..+|+.++...++..+++.+.+
T Consensus 304 ~~~~~~~~---~~~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 304 FLLLFFLG---PGSPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHHHH---hhhHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 77765531 1344444444444444444 3446667888888763 44689999999999999999999999
Q ss_pred HhHHhhCcc
Q 010239 461 PLKDLLGAG 469 (514)
Q Consensus 461 ~l~~~~g~~ 469 (514)
.+.+..|+.
T Consensus 380 ~~l~~~Gy~ 388 (428)
T PF13347_consen 380 LLLALVGYD 388 (428)
T ss_pred HHHHHhCcC
Confidence 998887755
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=177.35 Aligned_cols=326 Identities=13% Similarity=0.047 Sum_probs=198.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHH-HHHHHHHHHHHHHHH-h----hh--hHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL----GRRREL-ILAALLYLVGALVTA-L----AP--DFIIMVVGRFV 156 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--~~~~l~~~r~l 156 (514)
+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++.. . .+ ....+++..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 799999999999999999999999999999996 777654 555555554444432 1 11 22334555677
Q ss_pred HhhhhhhhhhHHHHHHhhcCCC-CcchhHHhHHHHH-----HHHHHHHHHHhhhhhcccc-cchhHHHHhhHHHHHHHH-
Q 010239 157 FGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFF-----IVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMG- 228 (514)
Q Consensus 157 ~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~- 228 (514)
.+++.+...+...++..+...+ ++|.+..++-..+ ..++..++|.++....... .+|.....+.++++++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777644 6788876665543 3345556666655432111 012212222233333322
Q ss_pred HHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhH
Q 010239 229 MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA 308 (514)
Q Consensus 229 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (514)
+.....||+++. + .++...+..++.+++++.+..
T Consensus 199 ~~~~~~~e~~~~----~------------------------------------------~~~~~~~~~~~~l~~n~~f~~ 232 (448)
T PRK09848 199 ICFKSTRENVVR----I------------------------------------------VAQPSLKISLQTLKRNRPLFM 232 (448)
T ss_pred HHHcCcEeccCC----C------------------------------------------ccCCCHHHHHHHHhCCchHHH
Confidence 222234554210 0 000111224566788877665
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHH
Q 010239 309 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 388 (514)
..+...+..... .....+.++++++....+....++......++.+++.++.+++.||+++|+.+..+..+..++.
T Consensus 233 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 233 LCIGALCVLIST----FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHH----HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 554444433322 2333445555554333244444444444466778899999999999999999998888777776
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchh-------hhhhHHHHHHHHHHHHHHHHHHhchH
Q 010239 389 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR-------LRGRGLSVAVLVNFGANALVTFAFSP 461 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~ 461 (514)
+++.. ....+.+.......+.+.+.+. ..+...+...|..|.+ ..|..+|+.++...+|..+++.+.|.
T Consensus 309 ~~~~~---~~~~~~~~~~~~~~l~g~G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 309 LLFFW---VSVWSLPVALVALAIASIGQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHH---cCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65542 1122333333333333333333 3345557777777643 45999999999999999999999999
Q ss_pred hHHhhCc
Q 010239 462 LKDLLGA 468 (514)
Q Consensus 462 l~~~~g~ 468 (514)
+.+..||
T Consensus 385 ~l~~~G~ 391 (448)
T PRK09848 385 ILGLSGY 391 (448)
T ss_pred HHHHcCC
Confidence 9887776
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-19 Score=170.91 Aligned_cols=326 Identities=13% Similarity=0.054 Sum_probs=206.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhH-HHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRR-ELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (514)
+|+++..+|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++.+++-..++ +..+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 79999999999999999999999999999996 78865 455677777777776654442 34566666777
Q ss_pred hhhhhhhhhHHHHHHhhcCC-CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc------cchhHHHHhhHHHHHHHHHH
Q 010239 158 GIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~wr~~f~~~~~~~~~~~~~ 230 (514)
.++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.+.. .+|+....+.+++.++...+
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999986 788999999999999999888877765544322 26788777777776664433
Q ss_pred hh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 231 MW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 231 ~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
.+ ..+|.++. + .++...+...+..++++.++..
T Consensus 200 ~~~~~kE~~~~----~------------------------------------------~~~~~~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 200 CFFTTKERVEA----P------------------------------------------PTTTSMREDLRDIWQNDQWRIV 233 (460)
T ss_pred HHhcceeccCC----C------------------------------------------ccCCCHHHHHHHHhCChHHHHH
Confidence 33 34443210 0 0000112245566677665544
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
.....+.............+|..++ .. +....+.+.....+..+++.++++++.||+++|+....+..+..+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~~~y~----~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 234 GLLTIFNILAVCVRGGAMMYYVTWI----LG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh----cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4333232222211111222232222 22 233445566777888899999999999999999887654443333222
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
++.+ .+....+......++.+ .......+..+++..|..+ .+..|..++.......+|..+++.+.|.+
T Consensus 309 ~~~~---~~~~~~~~~~~~~~l~g-~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 309 AMFF---VPMQASITMFVFIFVIG-VLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHH---hchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11222222222222222 2223333444566666655 33345556777788999999999999999
Q ss_pred HHhhCcc
Q 010239 463 KDLLGAG 469 (514)
Q Consensus 463 ~~~~g~~ 469 (514)
.+..|+.
T Consensus 385 L~~~Gy~ 391 (460)
T PRK11462 385 LAYGGYD 391 (460)
T ss_pred HHHcCCC
Confidence 8877763
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=158.39 Aligned_cols=400 Identities=17% Similarity=0.096 Sum_probs=257.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAM 165 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 165 (514)
+|+++++..-+.+.|..-.-+..+++|+++||+ |+|+.++.|.+++.+|.++.+.++ +...++++.++.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 569999999999999999999999999999995 999999999999999999999984 78899999999999999999
Q ss_pred hHHHHHHhhcCCCC--cchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHH
Q 010239 166 HAAPMYIAETAPTP--MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLL 243 (514)
Q Consensus 166 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~ 243 (514)
+....++.|.+|++ +|...++++.++.++|.+++|++.+++.++. +|...|.+.++-..+.++..+..+..-.....
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 99999999999754 4778899999999999999999999999998 99999999888877765555544321110000
Q ss_pred hhccccCCccccHHHHHHH----HHHH--hCCCCCCCCchhHHH--HHHhh---hhccccccchhHHHhhhchhhHHHHH
Q 010239 244 CAMKRKGDMQDLRESAISC----LCRL--RGQSIGDSAPTEVDE--ILTEL---SYVGEDKEVSLREVFHGKCLKALIIG 312 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (514)
++.+............... .... ...+.+ ........ ..... ...-..++.. .+.-|....-++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~ 292 (498)
T COG3104 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQN-TFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLF 292 (498)
T ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHH
Confidence 0000000000000000000 0000 000000 00000000 00000 0000001100 111111122234444
Q ss_pred HHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc--h-----hhhhhHHHHH
Q 010239 313 AGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR--P-----LLLGGVSGIV 385 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~-----~~~~~~~~~~ 385 (514)
..+++...--..+.+..|.....++..+.-.....+..+...+.-++.+++..++..|.+++ . -.-+++.+++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g 372 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAG 372 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHH
Confidence 44444444444455555655544332111234577888888888889998888888885443 1 2334555666
Q ss_pred HHHHHHHHhhhc----cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchH
Q 010239 386 ISLFLLGSYYLF----LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSP 461 (514)
Q Consensus 386 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 461 (514)
.+++++...... ....+..+.+...++......+..|+..+++....|+...+..++........+..++..+.+.
T Consensus 373 ~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 373 LGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 666655543111 1224555666666777777888889999999999999999999999999988888888877773
Q ss_pred ------hHHhhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 462 ------LKDLLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 462 ------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
..+.......|..++.+.++.....+...|
T Consensus 453 ~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 453 TAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 344455666788877777766666554433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=154.23 Aligned_cols=331 Identities=20% Similarity=0.127 Sum_probs=230.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhh-HHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRR-RELILAALLYLVGALVTALAPD------FIIMVVGRFVF 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 157 (514)
+|+++..+|.+..+.-+--++.-|+.|.+.|| +||+ +.++.+.+..++.+.++-.+++ ..-.++...+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 79999999999999999999999999999995 7874 5667788999999998888774 45566777888
Q ss_pred hhhhhhhhhHHHHHHhhcCC-CCcchhHHhHHHHHHHHHHHHHHHhhhhhcc----c--ccchhHHHHhhHHHHHHHHHH
Q 010239 158 GIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD----L--VAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~--~~~wr~~f~~~~~~~~~~~~~ 230 (514)
+++.......-.++..|+.+ ++||.+..++-+.+.++|.++...+...+.. . ..||+..-.+.++++.+..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999984 6889999999999999997777666655543 1 237888888888887775444
Q ss_pred hhc-ccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 231 MWW-LPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 231 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
.++ .+|.+..- +. . ....+.+.+..+..+++|+.+...
T Consensus 203 ~~~~v~ER~~~~--~~--------------------------~-------------~~~~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 203 CFFNVKERVVET--QP--------------------------T-------------KTGVKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHhhcccCcc--cc--------------------------C-------------cccccccHHHHHHHHHccchHHHH
Confidence 443 56653200 00 0 000011122234456777765554
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 388 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 388 (514)
.+...+.+. +.+.......++.+. .+. +.............+.+++.++..++.+|+|+|++...+.++..++.
T Consensus 242 l~~~l~~~~----~~~i~~s~~~yy~~y~lg~-~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 242 LLMNLLLFI----AFNIRGSIMVYYVTYVLGD-PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHH----HHHHHhhhhheeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 443322222 222333333333332 233 45566677777777778889999999999999999999988888877
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHhchH
Q 010239 389 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFP-------LRLRGRGLSVAVLVNFGANALVTFAFSP 461 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 461 (514)
+++.+. +.++.+..++..++. +.......++.+++++|... .+..|...|...++.-+|.+++..+.|+
T Consensus 317 ~~~~f~---~~~~~~l~~~~~~i~-~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 317 LLLYFT---PAGSVVLIVVALIIA-GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHhh---cCcchHHHHHHHHHH-HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 766442 223333333333333 33334445788888888754 3456889999999999999999999999
Q ss_pred hHHhhCcc
Q 010239 462 LKDLLGAG 469 (514)
Q Consensus 462 l~~~~g~~ 469 (514)
+.+..||.
T Consensus 393 ~L~~~Gyv 400 (467)
T COG2211 393 ILGAIGYV 400 (467)
T ss_pred HHHHcCCC
Confidence 99887754
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=161.75 Aligned_cols=393 Identities=15% Similarity=0.164 Sum_probs=230.8
Q ss_pred CccchhHHHHHHHHHHHHHHhhcccccccccc-cccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010239 43 ENYSVSAAILPFLFPALGGLLYGYDIGSTSCA-TISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL 121 (514)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~ 121 (514)
++.+|+..++..+. .++.+...+++.+. -|.+++-| .+.+.+..|++.++..++.+++++..|+++.|.
T Consensus 29 ~~t~wrsi~l~~~~----sfl~~v~~sI~~~s~wpYl~~lD------~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~ 98 (488)
T KOG2325|consen 29 RKTNWRSIYLALLN----SFLVAVQFSIYLTSMWPYLQKLD------PTATATFFGLVIAASSLGHAIFSLIFGIWSNKT 98 (488)
T ss_pred cCCchHhHHHHHHH----HHHHhhhheEEEeecchhhhhcC------CCCCcchhhHHHHHHHHHHHhcchhhccccccc
Confidence 34455555555433 34455555554443 34444311 477888999999999999999999999999999
Q ss_pred hh-hHHHHHHHHHHHHHHHHH-Hhh---h-hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHH
Q 010239 122 GR-RRELILAALLYLVGALVT-ALA---P-DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195 (514)
Q Consensus 122 Gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 195 (514)
+. |+.++.|.++..+|+++. ++. + ..+.++++|++.|+|.| ......+++++....++|.++++....+..+|
T Consensus 99 ~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 99 GSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 97 889999999999999998 442 3 57899999999999988 67778999999988899999999999999999
Q ss_pred HHHHHHhhhhhcccc------------cchhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHH
Q 010239 196 MVGGYGIGSLLVDLV------------AGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISC 262 (514)
Q Consensus 196 ~~~g~~~~~~l~~~~------------~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
.++||.++..+.... .-+..+-|+.+++.++..+ +.++++|.++.-.+++.++
T Consensus 178 ~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~-------------- 243 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRS-------------- 243 (488)
T ss_pred HHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccccccc--------------
Confidence 999998887765310 1234556777777777444 4445777654111100000
Q ss_pred HHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCC
Q 010239 263 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+ ++.+.+ .++.+.. +..+...+.+....+...+.....-..+.+.....++...
T Consensus 244 -------------~---~~~~~~-~~~~~~~---------~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~ 297 (488)
T KOG2325|consen 244 -------------V---EEEKSD-IEKVKKP---------KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTG 297 (488)
T ss_pred -------------c---hhhccc-hhhhccC---------ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhcccc
Confidence 0 000000 0000001 1111122222222222222222223333344445555534
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH-HHHhH---hCCchhhhhhHHHHHHHHHHHHHhhhccC----------------Cc-
Q 010239 343 ASDATRVSILLGLFKLIMTGLAV-LVVER---LGRRPLLLGGVSGIVISLFLLGSYYLFLD----------------DV- 401 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~g-~l~d~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~- 401 (514)
...+........+.+++...+.. ...-| +.+|..+..+++....+..+....+.... ..
T Consensus 298 ~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~ 377 (488)
T KOG2325|consen 298 SEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS 377 (488)
T ss_pred chHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence 44444444444444444433322 22223 34455555554444444333221111100 00
Q ss_pred --------chH-HHHHHH-HHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchh
Q 010239 402 --------PAV-AVVALL-LYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 471 (514)
Q Consensus 402 --------~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 471 (514)
++. .+.... +++..+-. ......+.-+|...++.++++.++.......+..++|.+...+....|+++.
T Consensus 378 wc~~~~~v~~~~~l~~~i~~~g~~~P~-~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v 456 (488)
T KOG2325|consen 378 WCDTTTAVPLILYLISFIVVFGIAFPF-ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPV 456 (488)
T ss_pred hhccCcccChhhheeehhheecccccc-ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHH
Confidence 001 111111 11111111 1122236668888889999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHhC
Q 010239 472 FYAFGVIAVLSLAFIF 487 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (514)
+.+.++..++...+..
T Consensus 457 ~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 457 WIILLCLLLVVAALWI 472 (488)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766655555444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=144.72 Aligned_cols=348 Identities=15% Similarity=0.131 Sum_probs=235.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHhhhhhhhhhH
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRR-ELILAALLYLVGALVTALAPD---FIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+.+..|...++..+..++-+|+.|.++|+.|+|| .+-+...+..+..++..++++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4567788999999999999999999999999665 455555566666666666654 556667778889999999999
Q ss_pred HHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhh--hcc---------------cccchhHHHHhhHHHHHHHHH-
Q 010239 168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL--LVD---------------LVAGWRYMYGASTPLAVIMGM- 229 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~--l~~---------------~~~~wr~~f~~~~~~~~~~~~- 229 (514)
-.+++.+..++++-++..++-.....+|..+.-++... ... ....=|..+.+.++..++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888777766666666555444311 111 112567788888877777544
Q ss_pred HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 230 GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 230 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
.++..++.++-. + .+.. .....-++-..+++++.+.+.....
T Consensus 216 m~~~v~~~~~~~---------~-------------------------~~~~----~l~~g~k~L~~t~k~i~~~~~i~~F 257 (438)
T COG2270 216 MILNVHDAEKIS---------S-------------------------PPPT----ALRNGFKELKSTFKEIRGRKNLVLF 257 (438)
T ss_pred HHhccccccccc---------c-------------------------cchH----HHHHHHHHHHHHHHHHhcccchHHH
Confidence 344455443200 0 0000 0000011112234445444443333
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 388 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 388 (514)
++ ..+...-+.+........+-. ++|. +..+.........+..++|+++.|++.||+|.|+++..+.++..+.+
T Consensus 258 Li----A~~~~~DGv~til~~~~~fg~~~~gl-s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 258 LI----ARFFYIDGVNTILAMGGVFGAADLGL-SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HH----HHHHHHhhHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 33 333333445566666666655 7788 88899999999999999999999999999999999888877776665
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-
Q 010239 389 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG- 467 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g- 467 (514)
+..... ... ..+....++.+.+..+.....-++..+.+|+++.++.+|+++..+...+.++|++.+.+.+..|
T Consensus 333 ~~~~~~-----~~~-~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 333 LYLIFL-----EGE-LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHHc-----ccc-HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 544321 122 2222332333334444455667899999999999999999999999999999999999999877
Q ss_pred cchhhHHHHHHHHHHHHHhCC
Q 010239 468 AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~ 488 (514)
.+..+....++..++.++.+.
T Consensus 407 ~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 407 SRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred hhhHHHHHHHHHHhhHhhEEe
Confidence 444555666666666655544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-20 Score=178.37 Aligned_cols=383 Identities=18% Similarity=0.204 Sum_probs=3.0
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010239 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 135 (514)
++++..+......+.....+..+++. |++++++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~ 79 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMG 79 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHH
Confidence 33444455566777778889999999 99999999999999999999999999999999888899999999999
Q ss_pred HHHHHHHhhh--------------------------------------------------hHHHHHHHHHHHhhhhhhhh
Q 010239 136 VGALVTALAP--------------------------------------------------DFIIMVVGRFVFGIGIGLAM 165 (514)
Q Consensus 136 ~~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~ 165 (514)
+|++++++=+ -+..+++++++.|+|....+
T Consensus 80 ~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~ 159 (539)
T PF03137_consen 80 LGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLY 159 (539)
T ss_dssp ------------------------------------------------------------------------SSS-----
T ss_pred HHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCc
Confidence 9999987610 03678899999999999999
Q ss_pred hHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc---------------------ccchhHHHHhhHHHH
Q 010239 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------------------VAGWRYMYGASTPLA 224 (514)
Q Consensus 166 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------------~~~wr~~f~~~~~~~ 224 (514)
+.+.+|+-|..++++-+..+|+..+...+|.++|.++++.+... .+.|..-|++.+++.
T Consensus 160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987741 124777888888888
Q ss_pred HHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhc
Q 010239 225 VIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 304 (514)
Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (514)
++..+.++++|+.-+...+.. ++.+ .. +.+..+.. .......+..+......++-....+++++|+
T Consensus 240 ~l~aipl~~FPk~lp~~~~~~--~~~~------~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np 305 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGTSERQ--EEKE------SS-----ERKEEDSD-KDSFKDPKSKKSFGKSIKDFPKALKRLLTNP 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCccccc--chhh------hh-----hcchhhhh-hhcccccccccchhhhhhhHHHHHHHHhcCh
Confidence 887777777776533110000 0000 00 00000000 0000000000000111222334566677776
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHH-HHHHHHHHHHHHHhHhC--Cchhhhhh
Q 010239 305 CLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLG--RRPLLLGG 380 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~r~~~~~~ 380 (514)
.+.... +...........+..+.|.|++. ++. ++..+.++.....+ +..+|.+++|++.+|++ .|..+...
T Consensus 306 ~f~~~~----la~~~~~~~~~G~~tF~pKylE~QF~~-sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~ 380 (539)
T PF03137_consen 306 VFMCLI----LAGVFESFIVSGFATFLPKYLESQFGL-SASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC 380 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence 544433 33333344455677788888875 555 66677766655444 66788999999999875 34444444
Q ss_pred HHHHHHHHHHHHHhhhc------------cC------------------------------------Ccc-hHHHHHHHH
Q 010239 381 VSGIVISLFLLGSYYLF------------LD------------------------------------DVP-AVAVVALLL 411 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~------------~~------------------------------------~~~-~~~~~~~~~ 411 (514)
.+...++.+++...+.. .. ... ...++..++
T Consensus 381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~ 460 (539)
T PF03137_consen 381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI 460 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence 44444433331111000 00 001 112222222
Q ss_pred HHHHhhcccccccceeeccccchhhhhhHHHHHHHH-HHHHHHHHHHhchHhHHh
Q 010239 412 YVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDL 465 (514)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~ 465 (514)
..........|.. ...-..+|+++|+.|.|+...+ +-+|.+-+|.++|.+.|.
T Consensus 461 ~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 461 LSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 2333333344444 5667889999999999999987 566778899999999985
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=154.74 Aligned_cols=377 Identities=17% Similarity=0.207 Sum_probs=260.1
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 132 (514)
.+.++++..+..++..+.+...+..+++. |+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~ 170 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLV 170 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechh
Confidence 33556677788888888888999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh--------------------h--------------------------------hHHHHHHHHHHHhhh
Q 010239 133 LYLVGALVTALA--------------------P--------------------------------DFIIMVVGRFVFGIG 160 (514)
Q Consensus 133 ~~~~~~~~~~~~--------------------~--------------------------------~~~~l~~~r~l~G~~ 160 (514)
+++++++++++- + -+..++++.++.|+|
T Consensus 171 ~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG 250 (735)
T KOG3626|consen 171 LMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG 250 (735)
T ss_pred HHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence 999999999871 0 023678899999999
Q ss_pred hhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc------------------ccchhHHHHhhHH
Q 010239 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL------------------VAGWRYMYGASTP 222 (514)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------------~~~wr~~f~~~~~ 222 (514)
....++.+.+|+-|...+++-...+|+..+...+|.++|.++|+++... .+.|+.-|++.+.
T Consensus 251 ~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~ 330 (735)
T KOG3626|consen 251 ATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA 330 (735)
T ss_pred CCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998741 1248888889999
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCC---CCchhHHHHHHhhhhccccccchhHH
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGD---SAPTEVDEILTELSYVGEDKEVSLRE 299 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (514)
+.++..+.++++|...+.-.++ ...++.+..+.++ +......+ .-++-....++
T Consensus 331 ~~~~~a~p~f~fPk~lp~~~~~----------------~~~~~~~~~k~~~~~~~~~~~~~~-------~ikdfp~s~~~ 387 (735)
T KOG3626|consen 331 LLLFSAVPLFFFPKELPKSQKR----------------KRARDLHVLKTESGGAKSDKTFGK-------KIKDFPKSIKR 387 (735)
T ss_pred HHHHHHHHHHhCcccCcccccc----------------chhhhhcccccccccccCCcchhh-------hHHHHHHHHHH
Confidence 9888888888888654311000 0000000000000 00000000 01112334566
Q ss_pred HhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHH-HHHHHHHHHHHHHhHhCC--ch
Q 010239 300 VFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGL-FKLIMTGLAVLVVERLGR--RP 375 (514)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--r~ 375 (514)
+++|+.+... .+...+....+..+..|+|.|++. ++. ++..+..+.....+ +..+|.+++|++.+|+.. |.
T Consensus 388 ll~N~if~~~----~l~~~~~~~~~~G~~tFlPKyLE~Qfg~-sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~ 462 (735)
T KOG3626|consen 388 LLSNPIFMLV----VLASVIESLAITGYITFLPKYLETQFGI-SASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARG 462 (735)
T ss_pred HhcCchHHHH----HHHHHHHHHHHhhHHHhhHHHHHHHcCC-CHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHH
Confidence 6666654433 344444444556777889999875 555 77777777755444 455788899999998764 44
Q ss_pred hhhhhHHHHHHHHHHHHHhhhc----------------------------------------------------------
Q 010239 376 LLLGGVSGIVISLFLLGSYYLF---------------------------------------------------------- 397 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 397 (514)
.....+++..++.+.....+..
T Consensus 463 ~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChA 542 (735)
T KOG3626|consen 463 AAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHA 542 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhh
Confidence 4444444444433332111111
Q ss_pred -------c-------------C-----C-------------cchHHHHHHHHH-HHHhhcccccccceeeccccchhhhh
Q 010239 398 -------L-------------D-----D-------------VPAVAVVALLLY-VGCYQLSFGPIGWLMISEVFPLRLRG 438 (514)
Q Consensus 398 -------~-------------~-----~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 438 (514)
. . + .....+++..++ .+....+..|. +.++...+|+++|.
T Consensus 543 GC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~-~~i~LR~V~~e~ks 621 (735)
T KOG3626|consen 543 GCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPG-MLIVLRCVPPEEKS 621 (735)
T ss_pred CCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcc-eEEEEEccCchhch
Confidence 0 0 0 001122222222 23333333344 47888899999999
Q ss_pred hHHHHHHHH-HHHHHHHHHHhchHhHHh
Q 010239 439 RGLSVAVLV-NFGANALVTFAFSPLKDL 465 (514)
Q Consensus 439 ~~~g~~~~~-~~~g~~~~~~~~g~l~~~ 465 (514)
-++|+..+. +-+|.+-+|.++|+++|.
T Consensus 622 ~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 622 FALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 999999987 667777899999999985
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=131.27 Aligned_cols=328 Identities=15% Similarity=0.077 Sum_probs=222.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHH-HHHHHHHHHHHHHHhh-----h--------h-H-
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELI-LAALLYLVGALVTALA-----P--------D-F- 147 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~~-----~--------~-~- 147 (514)
++++....+.+.+...+... ..+.+|+.||+.+ ||..++ .|.++...+..+..++ . . .
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 78999999999988887755 6899999999999 875554 4666666666555552 2 1 1
Q ss_pred -HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHH--H
Q 010239 148 -IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL--A 224 (514)
Q Consensus 148 -~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~--~ 224 (514)
....+.-.+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+..-|..-.+.... .
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 2344555788999999999999999999999999999999999999999999999999988663444433333332 2
Q ss_pred HHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhc
Q 010239 225 VIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGK 304 (514)
Q Consensus 225 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (514)
++..++..+-.|.+..... +..++++..-...++++..++
T Consensus 169 ~~l~~ia~wg~E~r~~~~~----------------------------------------~~~~~~~~~f~~a~~~~~~~~ 208 (403)
T PF03209_consen 169 LLLNLIALWGQEPRRSRRA----------------------------------------AAAERPRPPFREAWRQVWASP 208 (403)
T ss_pred HHHHHHHHHhcccCCcccc----------------------------------------cCCCCCCccHHHHHHHHHhCC
Confidence 2233333333333210000 000001222234566667777
Q ss_pred hhhHHHHHHHHHHHHHhhChhHHHHhH-HHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh-HhCCchhhhhhHH
Q 010239 305 CLKALIIGAGLVLFQQITGQPSVLYYA-ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE-RLGRRPLLLGGVS 382 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~~~~~~~ 382 (514)
..+++.+..++.....+ .-...+ |+=-+-+|. +..+...+......+.++|-.+.|++.. |.++++....++.
T Consensus 209 ~a~~f~~fl~l~t~a~~----~QD~iLEPygg~Vfgm-sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~ 283 (403)
T PF03209_consen 209 QARRFFVFLFLGTLAFF----MQDVILEPYGGEVFGM-SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL 283 (403)
T ss_pred ChhHHHHHHHHHHHHHH----hhHHHcCCchhHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 66666554444333211 111111 222344566 8889999999999999999999998776 6777788878888
Q ss_pred HHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 383 GIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
..++++.++..... ..+.+......++++.+.+...... .+...+..+++..|..+|.......+...++..+.|.+
T Consensus 284 ~~~~~f~lii~a~~--~~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 284 LGALAFALIILAGP--LGSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHHHHHHHHh--cccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777654322 3345555555555554444433323 36677888889999999999999999999999999988
Q ss_pred HHh
Q 010239 463 KDL 465 (514)
Q Consensus 463 ~~~ 465 (514)
.|.
T Consensus 361 ~D~ 363 (403)
T PF03209_consen 361 RDL 363 (403)
T ss_pred HHH
Confidence 874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=153.39 Aligned_cols=176 Identities=16% Similarity=0.026 Sum_probs=137.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAPDFIIMVVGRFVFGIGIGLAM 165 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~ 165 (514)
+|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...+++++++.|++.+...
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 360 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT 360 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888899999999999999999999999988887654443332 2234567788889999999888777
Q ss_pred hHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhh
Q 010239 166 HAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCA 245 (514)
Q Consensus 166 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 245 (514)
.....++.|.+|++.|++++++......++..++|.+.+++.+...+|+.++++..+++++..+..+++||+|+++.++.
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 78888899999999999999975555556667888888888775546888887777777776667777899998765432
Q ss_pred ccccCCccccHHHHHHHHHHHhC
Q 010239 246 MKRKGDMQDLRESAISCLCRLRG 268 (514)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (514)
. +.+++.+|+++.+++++.
T Consensus 441 ~----~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 T----PAASDIQEAKEILVEHYD 459 (490)
T ss_pred c----ccccchhhHHHHhhcccc
Confidence 1 223578889999988873
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=124.08 Aligned_cols=137 Identities=27% Similarity=0.458 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCC
Q 010239 99 ITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT 178 (514)
Q Consensus 99 ~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 178 (514)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccC
Q 010239 179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA 236 (514)
Q Consensus 179 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 236 (514)
++|++.+++.+....+|..+++.+.+.+.+.. +|++.|++.+++.++..+..++ .||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999998876 8999999988887775544443 444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=131.34 Aligned_cols=315 Identities=17% Similarity=0.187 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh--hhhhhhHHHHHHhhcCCCC
Q 010239 102 GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIG--IGLAMHAAPMYIAETAPTP 179 (514)
Q Consensus 102 ~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 179 (514)
...+...+.++..|.++||+|||..+.+.++...+..+...+.. +|.++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44678889999999999999999999999999888888777766 44333 44332 2346778888999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHH
Q 010239 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRES 258 (514)
Q Consensus 180 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 258 (514)
+|....++.......+..++|.+++.+.... +.-.+|.+..+..++..+ ...++||+.+.-.+ .+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~------~~------- 210 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQEKER------SD------- 210 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCcccc------cc-------
Confidence 9999999999999999999999999999887 889999999988888544 45568887431000 00
Q ss_pred HHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhh---chhhHHHHHHHHHHHHHhhChhHHHHhHHHHH
Q 010239 259 AISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHG---KCLKALIIGAGLVLFQQITGQPSVLYYAASIL 335 (514)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
...+..........+ ....++...+. +....+.....+.......+..- ..++++
T Consensus 211 -----~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~---~~~~yl 268 (463)
T KOG2816|consen 211 -----ATLRELTPGSLDSSH--------------VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASD---VLLLYL 268 (463)
T ss_pred -----ccccccCCCcccchh--------------hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCcee---EEEEEE
Confidence 000000000000000 00011111111 11111111111111111111110 011122
Q ss_pred -HHcCCCCCchhHHHHHHHHHHHHHHHHHHH-HHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHH
Q 010239 336 -QSAGFSAASDATRVSILLGLFKLIMTGLAV-LVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYV 413 (514)
Q Consensus 336 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (514)
...++ +..+.+.+.+.......++.++.. .+...++.|+....+...-.+....+++. ...|.......+..
T Consensus 269 ~~~f~w-~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v~~~ 342 (463)
T KOG2816|consen 269 KAKFGW-NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGVVVA 342 (463)
T ss_pred eeecCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHHHHH
Confidence 23455 777888888888888888887777 67778898888888888888888877753 34444333333222
Q ss_pred HHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh
Q 010239 414 GCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 465 (514)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 465 (514)
+.....|...+..+...+++.+|++.++...+..+.+.++|.+.+.+...
T Consensus 343 --~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 343 --LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred --hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 22233456667888889999999999999999999999999999988654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=137.88 Aligned_cols=354 Identities=19% Similarity=0.119 Sum_probs=213.3
Q ss_pred ccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHhh----
Q 010239 74 ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG-----RRRELILAALLYLVGALVTALA---- 144 (514)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~---- 144 (514)
..+.+.++ +|+++++...+.+...+...+ .++.|.++|-+- ||+-++++.++..++.+..+..
T Consensus 12 ~~~~l~~~-------l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~ 83 (433)
T PF03092_consen 12 IYPFLKDD-------LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE 83 (433)
T ss_pred HHHHHHHH-------cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 34556666 999999999999888888765 566889999762 5555666777776666655553
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCC--CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHH
Q 010239 145 PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAP--TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222 (514)
Q Consensus 145 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~ 222 (514)
.+.....+.-++..+|......++.+++.|... ++.||...+.......+|.+++..++|.+.+.. ++|..|.+.++
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~ 162 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAA 162 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHH
Confidence 346777777788999999999999999999983 334788888889999999999999999999987 89999999888
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhh
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 302 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
+.++..+..+++.|..+. ++.+ +.. .. . .++...... ..++.....++.++
T Consensus 163 ~~~l~~~~~~~~~~e~~~-------~~~~------~~~-------~~--~---~~~~~~~~~----~~~~~~~~l~~~~~ 213 (433)
T PF03092_consen 163 LPLLMLIVALFLLEERKV-------RPAD------EVF-------SF--G---KEEVPCLFG----SFREQLSELWRALQ 213 (433)
T ss_pred HHHHHHHHHHHhhhhccc-------cccc------hhh-------cc--c---ccccchhhH----HHHHHHHHHHHHHh
Confidence 877765555444332110 0000 000 00 0 000000000 00111223444555
Q ss_pred hchhhHHHH-HHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhH
Q 010239 303 GKCLKALII-GAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV 381 (514)
Q Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 381 (514)
.+..+...+ ..++.............++........++ ++...+.+..+..++.++|..+......+..-|+++....
T Consensus 214 ~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~f-s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~ 292 (433)
T PF03092_consen 214 QRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHF-SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTT 292 (433)
T ss_pred hhHHHHHHHHHHHHHHhccCCCCccEEEEEecccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 544443333 11111111111000011111111111124 5556666666777777777777766666666666666555
Q ss_pred HHHHHHHHHHHHhhhcc-----CCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q 010239 382 SGIVISLFLLGSYYLFL-----DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 456 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 456 (514)
++..+..+.-.+..... -...+..+.-..+........+.|.. ..++|+.|+...|+.+++...+.++|..++.
T Consensus 293 ~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~ 371 (433)
T PF03092_consen 293 LVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSS 371 (433)
T ss_pred HHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 44443333211110000 01112222233333344444444554 6789999999999999999999999999999
Q ss_pred HhchHhHHhhC
Q 010239 457 FAFSPLKDLLG 467 (514)
Q Consensus 457 ~~~g~l~~~~g 467 (514)
.+...+.+..+
T Consensus 372 ~lg~~l~~~~~ 382 (433)
T PF03092_consen 372 TLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHcC
Confidence 99988887766
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=141.18 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=130.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHH
Q 010239 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP 169 (514)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 169 (514)
+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHhhcCCCCcchhHHhH-HHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhh-cccCchh
Q 010239 170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPR 239 (514)
Q Consensus 170 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~ 239 (514)
.++.|.+|++.|+...+. ++....+|.++++++.+++.+.. ||+..|.+.+++.++..++.+ .++++++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 999999999998887665 67788899999999999999987 899999998888776544443 4454443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-14 Score=142.01 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 010239 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET 175 (514)
Q Consensus 96 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 175 (514)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+...+...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777899999999999999999999999999999999999999999888888999999998888999999999999
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCch
Q 010239 176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238 (514)
Q Consensus 176 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 238 (514)
+|.++|++++|+..+...+|.+++|++++.+.+. +...+|++.+++.++.+++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999988764 467788888888777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.09 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=126.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888888888999999999999999998888777666665555667788888899999999888887888
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccC
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 236 (514)
..+..|.+|+ +|++++++++....+|..+++.+++.+.+.. +|+..|++.+++.++..+..++.||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888999985 5899999999999999999999999999987 9999999988888887777666664
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=138.12 Aligned_cols=146 Identities=13% Similarity=0.226 Sum_probs=125.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhhhhH
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+....+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999998877776632 3467788999999999988899
Q ss_pred HHHHHhhcCCCCcchhHHhHHH-HHHHHHHHHHHHhhhhhcccc-----cchhHHHHhhHHHHHHHHHH-hhcccCc
Q 010239 168 APMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGMG-MWWLPAS 237 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 237 (514)
...++.|++|+++|++++++.+ ...++|.++||++++.+.+.. .||+..|.+.+++.++..+. .++++|+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999997 678999999999999998863 26999999988887775444 4456765
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=131.60 Aligned_cols=165 Identities=15% Similarity=0.072 Sum_probs=126.1
Q ss_pred HHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHh
Q 010239 315 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSY 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 394 (514)
+.++..+.....+..+.|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+++..+.++.+++.+++...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 33333333333556778888899988 88899999999999999999999999999999999999988888887766542
Q ss_pred hhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHH
Q 010239 395 YLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYA 474 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 474 (514)
++.+.......+.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|++
T Consensus 109 -----~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 -----SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred -----hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 23333333333333333333 345557889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHh
Q 010239 475 FGVIAVLSLAFI 486 (514)
Q Consensus 475 ~~~~~~~~~~~~ 486 (514)
.+++.++..++.
T Consensus 183 ~~i~~~~~~~~~ 194 (434)
T PRK11663 183 AGIIAIVVGLFL 194 (434)
T ss_pred HHHHHHHHHHHH
Confidence 777665544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-14 Score=133.61 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=122.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~ 166 (514)
++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++..+..++.++..+.++. ..+++..++.|++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 68888899999999999999999999999999999999999999999988888776643 3355667888888888888
Q ss_pred HHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH
Q 010239 167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM 227 (514)
Q Consensus 167 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 227 (514)
....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||++.|++.+++.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTS 374 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999887 9999999988777664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=131.00 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 010239 95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174 (514)
Q Consensus 95 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 174 (514)
..++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44667788889999999999999999999999999999999998888888898888999999999999888888888899
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCc
Q 010239 175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237 (514)
Q Consensus 175 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 237 (514)
.+|+++|+++.++++....+|..+++++.+.+.+.. ||++.|++.+++.++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998887 89999999888888766655555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=132.07 Aligned_cols=148 Identities=24% Similarity=0.232 Sum_probs=127.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+..
T Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (406)
T PRK11551 250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL 329 (406)
T ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 68899999999999999999999999999999999999988877777777777777888888888889999888888999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccC
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 236 (514)
.+++.|.+|+++|++.+++.+....+|..++|.+++.+.+...+|...+++.....++..+..+++.+
T Consensus 330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887646777777776666665555554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=128.88 Aligned_cols=163 Identities=29% Similarity=0.386 Sum_probs=144.7
Q ss_pred cccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHh
Q 010239 65 GYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRR-ELILAALLYLVGALVTAL 143 (514)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~ 143 (514)
...........|.+.++. +|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEV------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HhHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555541 4889999999999999999999999999999999999 999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHH
Q 010239 144 APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL 223 (514)
Q Consensus 144 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~ 223 (514)
.++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|++.|++.+++
T Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~ 340 (352)
T cd06174 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAAL 340 (352)
T ss_pred hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 999999999999
Q ss_pred HHHHHHHhhcc
Q 010239 224 AVIMGMGMWWL 234 (514)
Q Consensus 224 ~~~~~~~~~~~ 234 (514)
.++..+..+++
T Consensus 341 ~~i~~i~~~~~ 351 (352)
T cd06174 341 ALLAALLLLLL 351 (352)
T ss_pred HHHHHHHheec
Confidence 88866655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=127.64 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHH
Q 010239 307 KALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 386 (514)
+...+..++.+...........+..|.+.++.+. +..+.++..+...++..++.+..|++.||+|||+++..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3444444555555555555666677877788888 888999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH--
Q 010239 387 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-- 464 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-- 464 (514)
+.++.+. .++.+..++.-++.+ .......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+
T Consensus 86 ~~~~~~~-----~~~~~~l~~~r~l~G-~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 86 ASTATMF-----ATGPESLYLLRILVG-IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7777654 233344444333333 33333445555778999999999999999999999999999999998874
Q ss_pred ----hhCcchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 465 ----LLGAGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 465 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
..||++.|++.++..++..++.+++.+|++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 358999999988777766666655566654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=125.74 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=126.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888888888899999999999999999988887777766666677888888899999999999888888
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccC
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 236 (514)
..++.|..|+ ++++++++++....+|..++|.+++.+.+.. +|+..|++.+++.++..+...+++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 8999999875 5679999999999999999999999999887 8999999999888876666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=112.37 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=220.6
Q ss_pred ccCCchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
.|++..++. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..++-|++.+ ...+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence 477777765 56667777888899999999999999999999999999999999999999999999999999988 5788
Q ss_pred HHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhc
Q 010239 168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL-VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAM 246 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 246 (514)
-.+++-...++++-.++.+...++.-+|..++.++|..+... ..+.+..+++......+..+..+++|..++...-++.
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 889999999999999999999999999999999999988762 2267777777776666677777778876553322221
Q ss_pred cccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHH---hhhchhhHHHHHHHHHHHHHhhC
Q 010239 247 KRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV---FHGKCLKALIIGAGLVLFQQITG 323 (514)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 323 (514)
...... .++...++.++..+.. .+..++.+.........++.+ ++.-...+.++.+.+.+....++
T Consensus 194 ~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg 262 (412)
T PF01770_consen 194 PPAEQD----------ANESESDKMNESPESS-SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG 262 (412)
T ss_pred Cccccc----------cccccccccccccccc-cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence 100000 0000000000000000 000000000000011111111 11122233445555666666667
Q ss_pred hhHHHHhHHHHHHHc---CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhH--HHHHHHHHHHHHhhhcc
Q 010239 324 QPSVLYYAASILQSA---GFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV--SGIVISLFLLGSYYLFL 398 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~ 398 (514)
+..+..|...+.++. .. ...-.|.+-....+.+.++.+..|++..++.+..-+..+. ++.+.+++++..
T Consensus 263 y~qv~nYvQ~LW~~v~~~~~-~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~----- 336 (412)
T PF01770_consen 263 YYQVINYVQSLWDTVPPSDN-ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF----- 336 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCC-CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 777777877777766 22 3445677777778888888888888855555533333322 223333333332
Q ss_pred CCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q 010239 399 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 456 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 456 (514)
.++.|......+++...+..... +...-++.....+.-|..+|+..++..+-..+-.
T Consensus 337 t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 337 TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 45677777777777777766553 3334455555557778888887776555444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=125.61 Aligned_cols=140 Identities=13% Similarity=0.063 Sum_probs=127.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|.+..++|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|++.+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHH-HHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHh
Q 010239 169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM 231 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 231 (514)
..++.+. |+++|++..++++ ...++|..+++.++|.+.+.. ++ ..|++.++++++..++.
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence 9999998 9899999999986 578899999999999999987 76 66777777776654443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=110.04 Aligned_cols=234 Identities=14% Similarity=0.168 Sum_probs=152.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|++..+++.+....+....+..++.|.++||+|||+.-++-.++.+++++. -..++++.++++|++.|++.+....+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999864 456899999999999999999999888
Q ss_pred HHH-HhhcC----CCCcchhHHhHHH-HHHHHHHHHHHHhhhhhccccc-chhHHHHhhHHHHHHHHHHhh-cccCchhH
Q 010239 169 PMY-IAETA----PTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVA-GWRYMYGASTPLAVIMGMGMW-WLPASPRW 240 (514)
Q Consensus 169 ~~~-i~~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~ 240 (514)
-++ +.|.- |++..+..++... ...++-.+++.+++.++.+..+ |-..+|....++.++..++.. .-+|....
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 876 44442 2222333333333 2233444555556666655441 347788888877777554443 34554220
Q ss_pred HHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHH
Q 010239 241 LLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQ 320 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (514)
- .+.. +. .+.-+..++.+.++++ ++..........
T Consensus 223 ~-----------~~~~---------------------~~----------~~~~~~a~~~i~~d~r---il~LG~~qslFE 257 (354)
T PF05631_consen 223 T-----------SSSS---------------------SL----------SGSFREAWRAILSDPR---ILLLGLIQSLFE 257 (354)
T ss_pred c-----------cccc---------------------ch----------HHHHHHHHHHHHcCch---hHHHHHHHHHHH
Confidence 0 0000 00 0001112333444433 333333344444
Q ss_pred hhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010239 321 ITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL 371 (514)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 371 (514)
...+.....|.|.+- +.......|+++..+.+..++|+.+..++..+-
T Consensus 258 ~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 258 GSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444445566777764 211345689999999999999999887665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-13 Score=127.09 Aligned_cols=136 Identities=19% Similarity=0.194 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 010239 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET 175 (514)
Q Consensus 96 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 175 (514)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999988888888888888999999999998888888899999
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhh
Q 010239 176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW 232 (514)
Q Consensus 176 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 232 (514)
+|+++|++++++++....+|..++|++.+.+.+.. ||++.|.+.+++.++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 999999999888777555444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-13 Score=127.30 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=125.4
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
......+.|.+.++.+. +..+.++......++.+++.++.|+++||+|||+.+..+..+..++.+++.. .++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 106 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL-----ATNVT 106 (398)
T ss_pred HHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----ccchH
Confidence 34566677888888888 7888999999999999999999999999999999999888877777666553 23333
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
..++...+. +.......+...+++.|.+|++.|++++++.+....+|..+++.+.+.+.+..||+..+++.+++.++..
T Consensus 107 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 107 QLLILRFLA-GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred HHHHHHHHH-hcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 333333333 3333334456668899999999999999999999999999999999999999999988888765555555
Q ss_pred HHhCCCCCCC
Q 010239 484 AFIFXXXXXX 493 (514)
Q Consensus 484 ~~~~~~~~~~ 493 (514)
++.+...++.
T Consensus 186 ~~~~~~~~~~ 195 (398)
T TIGR00895 186 LLLMRFLPES 195 (398)
T ss_pred HHHHHhCCCC
Confidence 5444444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=126.03 Aligned_cols=163 Identities=19% Similarity=0.074 Sum_probs=126.3
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 325 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
.......|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+++... ++.+.
T Consensus 22 ~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 95 (385)
T TIGR00710 22 DMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NNIET 95 (385)
T ss_pred HHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHH
Confidence 3444556778888888 88899999999999999999999999999999999999888887777766542 33333
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 484 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 484 (514)
.....++.+ .......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|+..+++.+++.++..+
T Consensus 96 ~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 96 LLVLRFVQA-FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHH-cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 333333333 3323333455678899999999999999999999999999999999999989999988888877777666
Q ss_pred HhCCCCCCCC
Q 010239 485 FIFXXXXXXX 494 (514)
Q Consensus 485 ~~~~~~~~~~ 494 (514)
..+...+|++
T Consensus 175 ~~~~~~~~~~ 184 (385)
T TIGR00710 175 LIFFILPETL 184 (385)
T ss_pred HHHHhCCCCC
Confidence 6555455543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=125.09 Aligned_cols=160 Identities=8% Similarity=0.069 Sum_probs=118.8
Q ss_pred hhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcc
Q 010239 324 QPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 402 (514)
Q Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
......+.+.++ ++.|. +..+.++..+...+..+++.++.|+++||+|||+++..+..+..++.+++.+. ++.
T Consensus 23 ~~~~~~~l~~~l~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~ 96 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSL-SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNV 96 (395)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHH
Confidence 344455555555 55787 88899999999999999999999999999999999988887777776655432 233
Q ss_pred hHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHH
Q 010239 403 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 482 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 482 (514)
+..+....+.+.... ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+++.++.
T Consensus 97 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 97 TLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 333333333332222 3345556788899999999999999999999999999999998875 78998998887777766
Q ss_pred HHHhCCCCC
Q 010239 483 LAFIFXXXX 491 (514)
Q Consensus 483 ~~~~~~~~~ 491 (514)
.++..+..+
T Consensus 175 ~i~~~~~~~ 183 (395)
T PRK10054 175 LVFIQIWVQ 183 (395)
T ss_pred HHHHHHHHh
Confidence 554443333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=119.28 Aligned_cols=171 Identities=24% Similarity=0.202 Sum_probs=142.7
Q ss_pred HHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHH
Q 010239 314 GLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 393 (514)
.+..+.....-....-.+|.+.++.+. +...+|...+.+.++..++.++...+.||+.||++++....+..++.++.++
T Consensus 19 a~~~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al 97 (394)
T COG2814 19 ALAAFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97 (394)
T ss_pred HHHHHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344666788999999999 9999999999999999999999999999999999999999999999988776
Q ss_pred hhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhH
Q 010239 394 YYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFY 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 473 (514)
..+.+..++.-.+.+...+. +.++..+...+++|+++|++++++.+....+...+|.++..++-|.+||+..|+
T Consensus 98 -----Ap~f~~Ll~aR~~~g~a~G~-f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 98 -----APSFAVLLLARALAGLAHGV-FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred -----hccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 34555555554444444433 345667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 010239 474 AFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~ 491 (514)
..+++.++..+..+...|
T Consensus 172 ~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 172 AIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999888887777
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-13 Score=129.32 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=120.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELI--LAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 164 (514)
+|.+..+.+++.+...++..+++++.|+++||. ++|+... .+.++.+++.+++.+.++++.+++.+++.|++.+..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 788999999999999999999999999999973 3443333 344445555666777889999999999999999999
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHH
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGM 229 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 229 (514)
.+...+++.|.+|++++++.+++++....+|..+||.+++.+.+..++|++.|++.+++.++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765699999998887766444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=123.79 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=124.6
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
.....|.+.++.+. +..+.++..+...++..++.+..|++.||+|||+++..+..+..++.+.... .++.+..+
T Consensus 28 ~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ 101 (390)
T PRK03545 28 PVGLLSDIAQSFHM-QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-----AWNFTVLL 101 (390)
T ss_pred HHcchHHHHhHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-----hccHHHHH
Confidence 33456888888888 8889999999999999999999999999999999999998888888776654 23444444
Q ss_pred HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
+...+.+.+. ....+...+++.|.+|+++|++++|+......+|..++|.+.+.+.+..||++.|++.++++++..+..
T Consensus 102 ~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 102 ISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 4433333222 333455557889999999999999999999999999999999999999999999999888777665554
Q ss_pred CCCCCC
Q 010239 487 FXXXXX 492 (514)
Q Consensus 487 ~~~~~~ 492 (514)
+...|+
T Consensus 181 ~~~~~~ 186 (390)
T PRK03545 181 IKLLPL 186 (390)
T ss_pred HHhCCC
Confidence 443443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=122.85 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=123.8
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHH
Q 010239 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 408 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
...|.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.++... .++.+..++.
T Consensus 41 ~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 114 (394)
T PRK10213 41 SLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-----ANSFSLLLIG 114 (394)
T ss_pred hhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-----HChHHHHHHH
Confidence 356777788888 8888999999999999999999999999999999999999988887766553 2344444444
Q ss_pred HHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 409 LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
..+.+.+.+. ..+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..||++.|++.+++.++..+....
T Consensus 115 r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~ 193 (394)
T PRK10213 115 RACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIK 193 (394)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333 345666788999999999999999999999999999999999999999999998887766665544433
Q ss_pred CCCC
Q 010239 489 XXXX 492 (514)
Q Consensus 489 ~~~~ 492 (514)
..|+
T Consensus 194 ~~p~ 197 (394)
T PRK10213 194 SLPS 197 (394)
T ss_pred HCCC
Confidence 3444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=125.75 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=127.8
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
.+....|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..+++.. .+.+..
T Consensus 12 ~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 85 (399)
T TIGR00893 12 NLSFAAPMLQEDLGL-SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----GAYVSL 85 (399)
T ss_pred hhhHhHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----cCHHHH
Confidence 455666777788888 88899999999999999999999999999999999998888877777766542 234444
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
++...+.+.+. ....+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|++.|++.+++.++..++
T Consensus 86 ~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 86 YILRVLLGAAE-APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHH-HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 44444444333 33445666889999999999999999999999999999999999999999999999888777776666
Q ss_pred hCCCCCCC
Q 010239 486 IFXXXXXX 493 (514)
Q Consensus 486 ~~~~~~~~ 493 (514)
.++..+++
T Consensus 165 ~~~~~~~~ 172 (399)
T TIGR00893 165 WLKFIPDP 172 (399)
T ss_pred hhheecCC
Confidence 55544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=128.41 Aligned_cols=138 Identities=18% Similarity=0.272 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 010239 95 EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAE 174 (514)
Q Consensus 95 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 174 (514)
..+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35667777888889999999999999999999999999888888888888888999999999999999999999999999
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc
Q 010239 175 TAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (514)
Q Consensus 175 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (514)
..|+++||+.+++......+|..+||.+++.+.+.. +|++.|++.+++.++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887 8999999999888876555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=128.74 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=130.6
Q ss_pred HHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 318 FQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
+.............|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++.+.
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---- 86 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV---- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC----
Confidence 33333344666778888899988 7888999999999999999999999999999999999998888887776653
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 477 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 477 (514)
.++.+..+... ++.+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.+|++.|++.+.
T Consensus 87 -~~~~~~l~~~~-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 87 -APNLELMIIFR-VIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred -cCCHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 23333333333 3333333344456668899999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHhCCCCCC
Q 010239 478 IAVLSLAFIFXXXXX 492 (514)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (514)
+.++..++.++..++
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 165 IGIIVVVVAFFILPR 179 (485)
T ss_pred HHHHHHHHHHHHcCC
Confidence 766665555444444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-12 Score=125.65 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHH
Q 010239 309 LIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISL 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 388 (514)
.+....+..+...........-.|.+.++.+. +..+.++..+.+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444444444444455667778999899887 77889999999999999999999999999999999999999888888
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccc-cchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC
Q 010239 389 FLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV-FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 467 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 467 (514)
++.+. .++.+..++.-.+.+.+.+. ..+.....+.+. .|+++|++++|+......+|..++|.+.|.+.++.|
T Consensus 86 ~~~~~-----a~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 86 LAAAF-----SPTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHH-----cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 77664 24444444444444433332 334433445454 477899999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 468 AGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
|++.|++...++++..++.++..|+.
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988777777666655555543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=122.84 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=120.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.|.+..+.|++.+.+.++..+++++.|++.||+|+|+++..+..+..++.+... + ...+....++.|++.....|..
T Consensus 230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA 306 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence 588888999999999999999999999999999999999988888877765543 2 2344557788888877888999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcc
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 234 (514)
.+.+.|..|+++++...+.+....++|..+||.+++++.++. +|++.|.+.+.+.++..+..++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888888888888899999999999999999987 89999999888887665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=125.16 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=124.9
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 325 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
..+....|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++... ++.+.
T Consensus 12 ~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 85 (379)
T TIGR00881 12 KNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----TSLWV 85 (379)
T ss_pred HhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----hhHHH
Confidence 3555667888888888 88899999999999999999999999999999999999988888887776542 23444
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHH-HhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT-FAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
.++...+. +.......+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|+..|++.+++.++..
T Consensus 86 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 86 MAALWALN-GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHH-HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 44433333 3333344566668899999999999999999999999999999 466666677889988888887776665
Q ss_pred HHhCCCCCCC
Q 010239 484 AFIFXXXXXX 493 (514)
Q Consensus 484 ~~~~~~~~~~ 493 (514)
++.+...++.
T Consensus 165 ~~~~~~~~~~ 174 (379)
T TIGR00881 165 LICFLLLRDS 174 (379)
T ss_pred HHHheeeCCC
Confidence 5555545443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=123.74 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=121.4
Q ss_pred HHHHhHH-HHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 326 SVLYYAA-SILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
......| .+.++.+. +..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++..+ . ++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~--~---~~~~~ 87 (352)
T PF07690_consen 14 IISPALPLYLAEELGL-SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF--A---SNFWL 87 (352)
T ss_dssp HHHHHHH-HHHCCSTT-TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--H---CCHHH
T ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh--h---hhHHH
Confidence 4445556 56677777 8889999999999999999999999999999999999998888888444432 1 34443
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 484 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 484 (514)
.++..+ +.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.+++.++..+
T Consensus 88 ~~~~~~-l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 88 LLIARF-LLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred Hhhhcc-ccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 333333 3334434445666789999999999999999999999999999999999999888999999999988888876
Q ss_pred H
Q 010239 485 F 485 (514)
Q Consensus 485 ~ 485 (514)
+
T Consensus 167 l 167 (352)
T PF07690_consen 167 L 167 (352)
T ss_dssp H
T ss_pred h
Confidence 5
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-12 Score=122.32 Aligned_cols=186 Identities=11% Similarity=-0.052 Sum_probs=130.7
Q ss_pred hHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchh
Q 010239 297 LREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPL 376 (514)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 376 (514)
++.+.+++.++..++...+..+ +........|.+.++.+. +..+.++......++.+++.++.|+++||++||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIF----GLGLLGVAVPVQIQMMTG-STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 3444456666655554333333 233556677888888877 78899999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q 010239 377 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVT 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 456 (514)
+..+..+.+++...+........++.+......++.+.+.+. ..+.....+.|.+|+++++++.++.+....+|..++|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSL-GVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 988877776666554322111122233333333333322222 2344457888999999999999999999999999999
Q ss_pred HhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 457 FAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 457 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
.+.+.+.+..+|++.+++.++..++..++.+.
T Consensus 164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 164 ALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999889988888777666665554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=126.48 Aligned_cols=144 Identities=20% Similarity=0.107 Sum_probs=112.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV--TALAPDFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+|++..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.|++......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 7999999999999999999999999999999999998776655444443322 22345666777888888865443444
Q ss_pred HHHHHHhhcCCCCcchhHHhHHHHHHHH-HHHHHHHhhhhhcc------------cccchhHHHHhhHHHHHHHHHHhhc
Q 010239 167 AAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVD------------LVAGWRYMYGASTPLAVIMGMGMWW 233 (514)
Q Consensus 167 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (514)
.......|.+|+++||.+.|+.+....+ |..++|.+.|.+.+ .. +|+..|++.++..++..+..++
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 4446777999999999999999988886 77999999999998 44 7999999887777765554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=122.70 Aligned_cols=170 Identities=13% Similarity=0.082 Sum_probs=127.3
Q ss_pred HHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 318 FQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.....+........|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..++..
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~---- 87 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL---- 87 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH----
Confidence 33333444555678888888888 7788999999999999999999999999999999999888887777766543
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 477 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 477 (514)
.++.+..+....+.+.+ .....+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+++.++
T Consensus 88 -~~~~~~~~~~~~l~g~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 88 -AETSSLFLAGRFLQGIG-AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred -hCcHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 22333333333333322 2223345567889999999999999999999999999999999888888899988888887
Q ss_pred HHHHHHHHhCCCCCCCC
Q 010239 478 IAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 478 ~~~~~~~~~~~~~~~~~ 494 (514)
+.++..++.+...+|++
T Consensus 166 ~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 166 MGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77766665544455543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-12 Score=124.60 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=127.1
Q ss_pred HHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 318 FQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
+........+..+.|.+.++.|. +..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++...
T Consensus 20 ~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---- 94 (471)
T PRK10504 20 FMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---- 94 (471)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----
Confidence 33333444666788999999988 7888888888889999999999999999999999998887777766655443
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGV 477 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 477 (514)
.++.+..+....+.+.+ .....+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||++.|.+...
T Consensus 95 -~~~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 95 -SGTLNELLLARVLQGVG-GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred -hCCHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 23333333333333333 3333455667889999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHhCCCCCC
Q 010239 478 IAVLSLAFIFXXXXX 492 (514)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (514)
+..+..+......++
T Consensus 173 ~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 173 VGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhCCC
Confidence 666666555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=119.14 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=119.5
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
........|.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+++.. .++.+
T Consensus 23 ~~~~g~~~~~i~~~~~~-s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~-----~~~~~ 96 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNL-PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF-----SHSLA 96 (394)
T ss_pred HHHHhhhhHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----cchHH
Confidence 34566667888888888 8889999999999999999999999999999999998888877777776654 23344
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH-hhCcchhhHHHHHHHHHH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAFGVIAVLS 482 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~ 482 (514)
..++...+.+.+.+.. .+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..+|++.|.+.+++.++.
T Consensus 97 ~~~~~~~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~ 175 (394)
T PRK03699 97 LFSIAMFVLGVVSGIT-MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAI 175 (394)
T ss_pred HHHHHHHHHHHhhHhh-ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4444434444333333 34445778899998899999999988888999999999888765 468999998877776665
Q ss_pred HHHhC
Q 010239 483 LAFIF 487 (514)
Q Consensus 483 ~~~~~ 487 (514)
.++.+
T Consensus 176 ~~~~~ 180 (394)
T PRK03699 176 FILTL 180 (394)
T ss_pred HHHHH
Confidence 54433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=119.43 Aligned_cols=161 Identities=14% Similarity=-0.010 Sum_probs=122.5
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
......|.+..+.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..++.........+.+..
T Consensus 17 ~~~~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
T TIGR00900 17 ITQVALPLYVLAGTG-SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQV 95 (365)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 445556777777777 7889999999999999999999999999999999999888877776666554322111233444
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
++...+.+ .......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.++..+++.++
T Consensus 96 ~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 96 YVLAGILA-IAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44433333 33333445666889999999999999999999999999999999999999999998888877666655544
Q ss_pred hCC
Q 010239 486 IFX 488 (514)
Q Consensus 486 ~~~ 488 (514)
.+.
T Consensus 175 ~~~ 177 (365)
T TIGR00900 175 IVS 177 (365)
T ss_pred HHh
Confidence 433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.5e-12 Score=121.43 Aligned_cols=178 Identities=13% Similarity=0.034 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 387 (514)
+......+..+.............|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL-TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444444444444455666677888888888 8889999999999999999999999999999999999888887777
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC
Q 010239 388 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 467 (514)
.++... .++.+..+...++.+.+.+ ...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+
T Consensus 91 ~~~~~~-----~~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 91 TLACGF-----APGYITMFIARLVIGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHH-----hccHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 766553 2333443433333333333 3345556788999999999999999999999999999999999888776
Q ss_pred --cchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 468 --AGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 468 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
|+..|.+.++..++..+. ....||.
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~-~~~~~~~ 191 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWL-RKNIPEA 191 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 887777655544444333 2334443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=117.64 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 387 (514)
..++...+.+...+..-..+..-.|.+.++.++ +..+.+.+.+...+..-++.++.|.++||.+.|..+..++++++++
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l-sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL-SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 344444444444333344566667888888887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhc--hHhHHh
Q 010239 388 LFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAF--SPLKDL 465 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~~ 465 (514)
.+++++. ++.+ .+.++..+.+.+...-.|.....+..-+|+++||+..++.|+..++|+.+.|.+. +.+.++
T Consensus 108 nil~Gfs-----~s~~-~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 108 NILFGFS-----PSLF-LFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHhhh-----hHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 9999862 3333 3334444444444433455557889999999999999999999999999999999 899988
Q ss_pred hCcchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 466 LGAGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 466 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
.+|+..|++-++++++..++.++..+++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999988888777776655543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-12 Score=120.23 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=116.6
Q ss_pred ChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh-CCchhhhhhHHHHHHHHHHHHHhhhccCC
Q 010239 323 GQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFLDD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.++.+..++|.++.+ .|. +..+++...........++.+++|+++||+ |||+.+..+.++..++.+++... ..
T Consensus 24 s~Yg~~~~L~~yL~~~lgl-s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~ 98 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKY-DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI 98 (493)
T ss_pred HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc
Confidence 344566677777654 577 888899999999999999999999999999 99999999988888877655421 11
Q ss_pred cchHHHHHHHHHHHHhhcccccccceeeccccchh--hhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHH
Q 010239 401 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 478 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 478 (514)
..........+...+.+ ...+...+++.|.+|++ .|.++.++.+...++|+.++|.+.|.+.+..||+..|.+.++.
T Consensus 99 ~~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred chhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11222222222222222 23344457889999875 6999999999999999999999999999999999999887665
Q ss_pred HHHHHHHhC
Q 010239 479 AVLSLAFIF 487 (514)
Q Consensus 479 ~~~~~~~~~ 487 (514)
.+++.+..+
T Consensus 178 m~l~li~~~ 186 (493)
T PRK15462 178 MIAGLVIFL 186 (493)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=121.52 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=120.4
Q ss_pred hChhHHHHhHHHHHHH---cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 322 TGQPSVLYYAASILQS---AGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.+++....++|.++++ .|. +..+++.......++..++.+++|+++|| +|||+++..+..+.+++.++++.
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~-s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~---- 98 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGF-SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM---- 98 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 3445566677777765 577 88899999999999999999999999999 89999999999988888877664
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhh---hhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL---RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYA 474 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 474 (514)
.++.+.......+. +.......+...+++.+.+|++. |+++.++.+...++|..++|.+.+.+.++.||+..|.+
T Consensus 99 -~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 99 -SIYPDLIFYGLGTI-AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred -cccHhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 22233333333333 33333344555678888888653 88899999999999999999999999998999999988
Q ss_pred HHHHHHHHHHHh
Q 010239 475 FGVIAVLSLAFI 486 (514)
Q Consensus 475 ~~~~~~~~~~~~ 486 (514)
.++..+++.+..
T Consensus 177 ~~~~~~~~~l~~ 188 (475)
T TIGR00924 177 AAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHH
Confidence 776555554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=119.56 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=121.7
Q ss_pred HhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHH
Q 010239 329 YYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVA 408 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
.-.|.+.++.+. +....+...+...++..++.++.|+++||+|||+++..+..+..++.++... .++.+..++.
T Consensus 37 p~l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~ 110 (413)
T PRK15403 37 PGIINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TTSMTQFLIA 110 (413)
T ss_pred cCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHH
Confidence 334556677787 7888899999999999999999999999999999999888877777766553 2344444444
Q ss_pred HHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 409 LLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
-++.+.+.. ...+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++..+..++
T Consensus 111 r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 111 RFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344333322 2234445678899999999999999999999999999999999998889999999988877777665544
Q ss_pred CCCCCC
Q 010239 489 XXXXXX 494 (514)
Q Consensus 489 ~~~~~~ 494 (514)
..||++
T Consensus 190 ~lp~~~ 195 (413)
T PRK15403 190 AMPETV 195 (413)
T ss_pred hCCCCc
Confidence 456543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-12 Score=122.83 Aligned_cols=137 Identities=23% Similarity=0.162 Sum_probs=112.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHHHh--hhhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA--LVTAL--APDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~ 164 (514)
++.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999998776555444333 22222 246777788889999999999
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHH-HHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHH
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 225 (514)
.+...+++.|.+|+++|++++++. +.+..+|..++|.+++.+.+..++|++.++..++..+
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999999999999999999999984 5667789999999999999987349888777666554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=121.90 Aligned_cols=179 Identities=12% Similarity=0.034 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
+....+...........+....|.+. +.|. +..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~ 106 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGF-SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVML 106 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhHHHH-HcCC-CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHH
Confidence 33333333333333333445566655 4577 888999999999999999999999999999999998888777777766
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH-hhCc
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD-LLGA 468 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~ 468 (514)
++...... ..+.+.......+.+.+.+.. .+.....+.|.+|+++|++++++.+....+++.+++.+.+...+ ..+|
T Consensus 107 ~~~~~~~~-~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 107 LMGFVPWA-TSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHhccccc-cchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 55432100 111222222222333333322 33444677899999999999999999999999999988876554 4689
Q ss_pred chhhHHHHHHHHHHHHHhCCCCCC
Q 010239 469 GILFYAFGVIAVLSLAFIFXXXXX 492 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (514)
+..|++.++++++..++.+++.+|
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999998888777765555444554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=118.31 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=122.4
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
...+....|.+.++.+. +..+.+...+...++..++.++.|+++||+|||+.+..+.....++..+.... ++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~ 102 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNA-GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----QSIE 102 (406)
T ss_pred hhhHhcchHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----ccHH
Confidence 33444455667788888 78888999999999999999999999999999999998887777776665431 2333
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
..+....+.+.+. ....+.....+.|.+|++.++++.++......++..++|.+.+.+.+..+|++.+++.+++.++..
T Consensus 103 ~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 103 QFTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 3333333333222 222345557788999999999999999888888999999999999998899999988888777766
Q ss_pred HHhCCCCCCCC
Q 010239 484 AFIFXXXXXXX 494 (514)
Q Consensus 484 ~~~~~~~~~~~ 494 (514)
+..+...|+++
T Consensus 182 ~~~~~~~~~~~ 192 (406)
T PRK15402 182 FGLWRAMPETA 192 (406)
T ss_pred HHHHHhCCCCC
Confidence 65544455543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=119.74 Aligned_cols=161 Identities=15% Similarity=0.060 Sum_probs=124.8
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
......|.+.++.|. +..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.++.+. .++.+..
T Consensus 21 ~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----~~~~~~l 94 (382)
T PRK10091 21 GIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----SSSYLML 94 (382)
T ss_pred HHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----hCcHHHH
Confidence 455567888888888 7888999999999999999999999999999999999998888888776654 2344444
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
++...+.+.+.+. ..+.....+.|.+|+++|+.++++......++..+++.+.+.+.+..||++.|.+.+.+.++..+.
T Consensus 95 ~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 95 AIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4444433333332 233444677889998899999999999999999999999999999899999999888776666555
Q ss_pred hCCCCCCC
Q 010239 486 IFXXXXXX 493 (514)
Q Consensus 486 ~~~~~~~~ 493 (514)
.+...|+.
T Consensus 174 ~~~~lp~~ 181 (382)
T PRK10091 174 IYFWVPDI 181 (382)
T ss_pred HHHhCCCC
Confidence 44445543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=119.65 Aligned_cols=158 Identities=10% Similarity=0.005 Sum_probs=113.9
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 325 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
.....+.|.+.++.+. +..+.+...+...++..++.++.|+++||+|||+++..+.++.+++.++.+.. .+.+.
T Consensus 53 ~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~ 126 (476)
T PLN00028 53 FAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATG 126 (476)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHH
Confidence 3455566788888998 78888888888999999999999999999999999988887777776655542 23333
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH---------hhCcchhhHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD---------LLGAGILFYAF 475 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~ 475 (514)
.++..++.+.+. ....+. ..++.|.+|++.|+.++|+.+...++|+.+++.+.+.+.. ..||++.|++.
T Consensus 127 l~~~r~l~G~~~-~~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 127 FIAVRFFIGFSL-ATFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHH-HhhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 333333333222 223232 3567899999999999999998888888888777665532 14799999988
Q ss_pred HHHHHHHHHHhCCCC
Q 010239 476 GVIAVLSLAFIFXXX 490 (514)
Q Consensus 476 ~~~~~~~~~~~~~~~ 490 (514)
+++.++..++.+++.
T Consensus 205 g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 205 GLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHc
Confidence 887776665554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=120.34 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=111.8
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
+....|++.++ +. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+++.+.... ..+.+..+
T Consensus 48 ~~~~~p~l~~~-g~-s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 124 (452)
T PRK11273 48 FALAMPYLVEQ-GF-SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMF 124 (452)
T ss_pred HHHhhHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc-cccHHHHH
Confidence 44566776665 77 88899999999999999999999999999999999999888888777766542110 11222333
Q ss_pred HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHH-HHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL-VTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
+...+.+.+.+. ..+.....+.|.+|+++|++++|+.+....+|+.+ ++.+...+....||+..|++.+++.++..++
T Consensus 125 ~~~~l~gi~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 125 VLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHhc-cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333333333333 33433456788899999999999999988888654 4443333333458888888887776665555
Q ss_pred hCCCCCC
Q 010239 486 IFXXXXX 492 (514)
Q Consensus 486 ~~~~~~~ 492 (514)
.+++.++
T Consensus 204 ~~~~~~~ 210 (452)
T PRK11273 204 AFAMMRD 210 (452)
T ss_pred HHHHccC
Confidence 4444444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=117.97 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=119.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+.
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~ 312 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL 312 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence 688999999999999999999999999999999999999998888877766554333 22222 234668888888887
Q ss_pred HHHHHhhcCC-CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHH-hhcccCchh
Q 010239 168 APMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG-MWWLPASPR 239 (514)
Q Consensus 168 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~ 239 (514)
......+..+ +++|++..++.+....++..++|.+.+++.+..++|...|++.++.+++..+. ..+.||++.
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7777777775 57899999999999999999999999999998756899999888887775444 445677643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=120.23 Aligned_cols=149 Identities=17% Similarity=0.032 Sum_probs=113.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL---A-PDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~~~~ 164 (514)
+|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6777776666666667777888999999999999999998887766555443322 1 23445556667778888888
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHH-HHHHHHHHHHHhhhhhcccc-cchhHHHHhhHHHHHHHHHHhhcccCc
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPAS 237 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~ 237 (514)
.+...+++.|.+|.+.|+.+.++... +..+|..++|.+.+++.+.. ++|+..+...++..++..+..+.++|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88889999999999999988888544 45589999999999998743 358998888888877766666666664
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=119.02 Aligned_cols=150 Identities=12% Similarity=0.084 Sum_probs=116.8
Q ss_pred hChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCc
Q 010239 322 TGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 401 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (514)
.......+..|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+++..+....+++.++.+.. ++
T Consensus 32 ~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~ 105 (426)
T PRK12307 32 FDFMLIFYIMYLIKADLGL-TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----SG 105 (426)
T ss_pred hHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----hH
Confidence 3344555666777788888 78889999999999999999999999999999999999998888887766542 33
Q ss_pred chHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHH
Q 010239 402 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 478 (514)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 478 (514)
.+..++...+.+.+.+ ...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.|++....
T Consensus 106 ~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 106 VIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 4444444433333333 334455578899999999999999999999999999999999888888999888775433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-12 Score=123.55 Aligned_cols=161 Identities=14% Similarity=0.018 Sum_probs=123.9
Q ss_pred ccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-----
Q 010239 70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----- 144 (514)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----- 144 (514)
......|.+.++ +|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++.
T Consensus 302 ~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
T TIGR00879 302 AIMYYSPTIFEN-------AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV 374 (481)
T ss_pred ehHHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 334445666555 78888888999999999999999999999999999999999988888887776621
Q ss_pred h------hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHH
Q 010239 145 P------DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYG 218 (514)
Q Consensus 145 ~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 218 (514)
+ +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+.. +|++.|+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~ 453 (481)
T TIGR00879 375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFI 453 (481)
T ss_pred CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccceeh
Confidence 1 22233333333333222344666778899999999999999999999999999999999998876 8999999
Q ss_pred hhHHHHHHHHHHhh-cccCch
Q 010239 219 ASTPLAVIMGMGMW-WLPASP 238 (514)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~e~~ 238 (514)
+.++++++..++.+ +.||++
T Consensus 454 ~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 454 FFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hHHHHHHHHHHHHheecccCC
Confidence 99888887655554 456643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=117.36 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=118.8
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
......|.+.++.+. +..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.++... .++.+..
T Consensus 26 ~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l 99 (394)
T PRK11652 26 IYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF-----AHSLTVL 99 (394)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----HccHHHH
Confidence 333456777888888 8889999999999999999999999999999999998888777777665543 2233333
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
++...+.+.+.+ ...+....+..|.++++.++.+.++.+....++..++|.+.+.+.+..||+..|++.+++.++..++
T Consensus 100 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 100 IAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 333333332222 2233444567788888899999999999999999999999999999889999988877766555444
Q ss_pred hCCCCCCC
Q 010239 486 IFXXXXXX 493 (514)
Q Consensus 486 ~~~~~~~~ 493 (514)
.....+|+
T Consensus 179 ~~~~~~~~ 186 (394)
T PRK11652 179 MARWMPET 186 (394)
T ss_pred HHHhCCcc
Confidence 43334543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=115.72 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=119.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+..
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 314 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHH-HHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHH
Q 010239 169 PMYIAETAPTPMRGQLISLKE-FFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG 228 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 228 (514)
..++.+. +++++++..++.. ...++|..+||.++|.+.+.. ++ ..|+..+++.++.+
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHH
Confidence 9998887 5566788888886 556788899999999999987 76 46666666655433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=116.95 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=118.8
Q ss_pred HHhHH-HHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 328 LYYAA-SILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 328 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
..+.+ ++.++.+. +..+.++......+...+..++.|+++||+|||+++..+..+..++.+.+.. .++.+...
T Consensus 30 ~~~~~~~~~~~~g~-s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~-----~~~~~~l~ 103 (400)
T PRK11646 30 FPLISIRFVDQLGW-AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI-----AHEPWLLW 103 (400)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----hccHHHHH
Confidence 33444 44566787 8889999999999999999999999999999999999998888888777654 23344444
Q ss_pred HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
+...+.+. ......|...+++.|.+|+++|++++|+.+....+|..++|.+.+.+. ..||++.|++.+.+.++..++.
T Consensus 104 ~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~ 181 (400)
T PRK11646 104 LSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN 181 (400)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333 333334555678899999999999999999999999999999999998 6799988888777766655444
Q ss_pred CCCCCC
Q 010239 487 FXXXXX 492 (514)
Q Consensus 487 ~~~~~~ 492 (514)
....++
T Consensus 182 ~~~~~~ 187 (400)
T PRK11646 182 AWLLPA 187 (400)
T ss_pred HHhCCc
Confidence 333443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=116.05 Aligned_cols=155 Identities=9% Similarity=-0.041 Sum_probs=107.3
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
....+.+.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++.+++... .....+.+..
T Consensus 31 ~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l 108 (402)
T TIGR00897 31 LEQGWLSPFLKALGL-SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GLGHANYPLI 108 (402)
T ss_pred hHHHhHHHHHHHhCC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hccCccHHHH
Confidence 344466677788888 88899999999999999999999999999999999999888887776543221 1111223333
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHH-HHHHHhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGAN-ALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
+....+.+.+.. ...+.....+.+.+|+++|++++|+.+....+|. .++|.+.+.+.+..|+...++....+.++..
T Consensus 109 ~~~~~i~G~g~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 186 (402)
T TIGR00897 109 LLFYGIRGLGYP-LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGG 186 (402)
T ss_pred HHHHHHHHcchH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 333333222222 2223334567788899999999999999998886 5788888888888886555444433333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=118.13 Aligned_cols=160 Identities=17% Similarity=0.121 Sum_probs=124.1
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
.....|.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+..+..++..++... ++.+...
T Consensus 10 ~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~ 83 (377)
T PRK11102 10 YLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQLI 83 (377)
T ss_pred HhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHH
Confidence 33456777788888 88899999999999999999999999999999999999888888877776542 2333333
Q ss_pred HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHh
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 486 (514)
....+.+.+ .....+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.+.+.++..++.
T Consensus 84 ~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 333333333 3333345557889999999999999999999999999999999999998999999888887777766555
Q ss_pred CCCCCCC
Q 010239 487 FXXXXXX 493 (514)
Q Consensus 487 ~~~~~~~ 493 (514)
....+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 4444543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=116.00 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=118.6
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
.+....|.+.++.+. +..+.++..+...++..++.+..|+++||+|||+++.........+..... ...+.+..
T Consensus 9 ~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-----~~~~~~~l 82 (368)
T TIGR00903 9 TFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL-----DPFNYEWL 82 (368)
T ss_pred HHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-----HhccHHHH
Confidence 455677888889998 888999999999999999999999999999998876554443333322111 11233344
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
+..-++.+.+.. .. +.......|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|++.+++.++..++
T Consensus 83 ~~~R~l~G~g~~-~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 83 LACQLLAALGQP-FL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHhHhH-HH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 444444333332 22 2333556899999999999999999999999999999999999999999999988887777666
Q ss_pred hCCCCCCCC
Q 010239 486 IFXXXXXXX 494 (514)
Q Consensus 486 ~~~~~~~~~ 494 (514)
.++..||..
T Consensus 161 ~~~~lp~~p 169 (368)
T TIGR00903 161 VLAALPALP 169 (368)
T ss_pred HHHHcCCCC
Confidence 666666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=120.01 Aligned_cols=157 Identities=13% Similarity=0.014 Sum_probs=119.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHh
Q 010239 315 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSY 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 394 (514)
+..+.............|.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.+++...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 105 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQGEFGL-TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344556667888888888 78889999999999999999999999999999999998888888777766542
Q ss_pred hhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHH
Q 010239 395 YLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYA 474 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 474 (514)
.+.+..++...+. +....+..+....++.|.+|+++|+.++++.+....+|..+++.+.+.+.+..+|++.|++
T Consensus 106 -----~~~~~l~~~~~l~-G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 -----PGYWTLFIARLVI-GMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred -----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 2333333333333 3333333445557889999999999999999999999999999999999998999988876
Q ss_pred HHHH
Q 010239 475 FGVI 478 (514)
Q Consensus 475 ~~~~ 478 (514)
.+..
T Consensus 180 ~~~~ 183 (496)
T PRK03893 180 GILP 183 (496)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=117.38 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=112.5
Q ss_pred hhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhccCCc
Q 010239 324 QPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDDV 401 (514)
Q Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (514)
++....+++.++ ++.|. +..++............+..+++|+++|| +|||+++..+.++..++.+++++. ...
T Consensus 30 ~y~~~~~l~~yl~~~lg~-~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~----~~~ 104 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGF-SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS----LLK 104 (489)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh----ccc
Confidence 344444555554 55777 77778888888887888888899999999 999999999999998888776642 111
Q ss_pred chHHHHHHHHHHHHhhcccccccceeeccccchh--hhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHH
Q 010239 402 PAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIA 479 (514)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 479 (514)
.....+...+ .+.......|...+++.|.+|++ +|+.++++.....++|..++|.+.|.+.++.||++.|++.++..
T Consensus 105 ~~ll~~~~~l-~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 105 PDLIFIALGT-IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred hhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 2222222333 33333344456668899999876 45789999999999999999999999999999999998865544
Q ss_pred HHHH
Q 010239 480 VLSL 483 (514)
Q Consensus 480 ~~~~ 483 (514)
+++.
T Consensus 184 ~~~~ 187 (489)
T PRK10207 184 IIAL 187 (489)
T ss_pred HHHH
Confidence 4433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=120.05 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=137.2
Q ss_pred ccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010239 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151 (514)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (514)
...+|.+.++. +|.++...|++.+++.+|..+|+++.+++.+|+++++++..+.++++++.+..+++++.+..+
T Consensus 238 ~aLlPl~a~~~------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~ 311 (524)
T PF05977_consen 238 WALLPLFARDV------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLAL 311 (524)
T ss_pred HHhhhHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHH
Confidence 44567666542 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHH
Q 010239 152 VGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 152 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 230 (514)
+..++.|++.........+.+.+..|++.|||.++++.+....+..+|..+.|.+.+.. |-+..+.+.++..++..++
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 8999988877765554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-11 Score=113.33 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=112.3
Q ss_pred hhHHHHhHHH-HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcc
Q 010239 324 QPSVLYYAAS-ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVP 402 (514)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
......+.|. +.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++... ..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~----~~~~ 91 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGL-STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA----VQSY 91 (366)
T ss_pred HHHhHHhhhHHHHHHhCC-CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----hhhH
Confidence 3456667775 6677888 88899999999999999999999999999999999999988888887776542 1033
Q ss_pred hHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh----------hCcchhh
Q 010239 403 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL----------LGAGILF 472 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~ 472 (514)
+..++..++.+ ...... +....++.|.+|+++|+++.++......+|..+++.+.+.+... .+|++.+
T Consensus 92 ~~~~~~~~~~g-~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 92 SVLLLLRLFIG-IAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHH-Hhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 33333333333 223333 33457889999999999999999988888888888887776653 3788887
Q ss_pred -HHHHHHHHHHHHH
Q 010239 473 -YAFGVIAVLSLAF 485 (514)
Q Consensus 473 -~~~~~~~~~~~~~ 485 (514)
+..+++..+..++
T Consensus 170 ~~~~~~~~~~~~~~ 183 (366)
T TIGR00886 170 VIVPAGILLLPALL 183 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 4334444433333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-12 Score=115.89 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
.+...+....+..--+.+....+..-+.++. +....|++.....+..++.+++.|++.||+.|++++.+|..+-.++.+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni-~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~ 113 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNI-SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVF 113 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCC-CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHH
Confidence 3333344444444444444445555455666 788899999999999999999999999999999999999998888888
Q ss_pred HHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-c
Q 010239 390 LLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-A 468 (514)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~ 468 (514)
.-++. ...|... +.=.+.+..-..+.|+..++++|.+|.++|++++++.++....|..+|-.+.+.+.+..+ |
T Consensus 114 ~~~fs-----~~Fwq~~-l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 114 ASGFS-----NHFWQVL-LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHH-----HHHHHHH-HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 76652 2334333 333444555566778888999999999999999999999999999988888888877777 9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 010239 469 GILFYAFGVIAVLSLAFIFXXXXXXXXS 496 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (514)
++.|...+++.++..++.+++.+|.+++
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 9999999999999988888888776654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-11 Score=118.09 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=118.1
Q ss_pred ccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh--hH--
Q 010239 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DF-- 147 (514)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-- 147 (514)
....|.+.++ +|.+....++......++..++.++.|+++||+|||++++.+..+.+++.++.+... +.
T Consensus 291 ~~~~p~i~~~-------~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~ 363 (479)
T PRK10077 291 LYYAPEIFKT-------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG 363 (479)
T ss_pred HHHHHHHHHH-------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCccc
Confidence 3345666666 788777777777788889999999999999999999999999999998887776432 11
Q ss_pred HHHHHHHHHHhhhhhh-hhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc------ccccchhHHHHhh
Q 010239 148 IIMVVGRFVFGIGIGL-AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV------DLVAGWRYMYGAS 220 (514)
Q Consensus 148 ~~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~------~~~~~wr~~f~~~ 220 (514)
.....+.++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.+.+. +.. +|++.|++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~ 442 (479)
T PRK10077 364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIY 442 (479)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHH
Confidence 1223334444444443 33677899999999999999999999999999988866655443 455 899999998
Q ss_pred HHHHHHHHHHhh-cccCch
Q 010239 221 TPLAVIMGMGMW-WLPASP 238 (514)
Q Consensus 221 ~~~~~~~~~~~~-~~~e~~ 238 (514)
++++++..++.+ +.||++
T Consensus 443 ~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 443 GCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHHhccccCC
Confidence 887777555444 466654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=117.28 Aligned_cols=140 Identities=13% Similarity=0.159 Sum_probs=122.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHH
Q 010239 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP 169 (514)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 169 (514)
+.+....|++.++..+...++.++.|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888878889999999999999999887777777
Q ss_pred HHHhhcCCCCcchhHHhH-HHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHH
Q 010239 170 MYIAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 170 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 230 (514)
.++.+..+++.++...+. .+....+|..+++.+++++.+.. ||+..|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Confidence 788888888888777666 67889999999999999999987 9999999998888775443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=111.36 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=110.5
Q ss_pred hHHHHhHHHHHH-HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 325 PSVLYYAASILQ-SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 325 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.......+.+.+ +.++ +..+.+++.++..++..+.++..|++.||+|.|+++.++..+..+..+.+++......++.+
T Consensus 51 ~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~ 129 (462)
T PRK15034 51 MLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFG 129 (462)
T ss_pred HHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHH
Confidence 344444555544 6788 88899999999999999999999999999999999999888888777766542111113334
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH-----HhhC-----------
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK-----DLLG----------- 467 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~g----------- 467 (514)
..++..++.+. .+..+ +.....+++.+|+++||+++|+....+++|..+++.+.+.+. +..|
T Consensus 130 ~lli~r~l~Gi-gg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~ 207 (462)
T PRK15034 130 IFIVIALLCGF-AGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV 207 (462)
T ss_pred HHHHHHHHHHH-HHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence 44443333333 23333 445578899999999999999998777777776666655433 3232
Q ss_pred --cchhhHHHHHHHHHHHHHhCCCCCC
Q 010239 468 --AGILFYAFGVIAVLSLAFIFXXXXX 492 (514)
Q Consensus 468 --~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (514)
++.+.++...+.++..++.+++.++
T Consensus 208 ~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 208 MSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455556555555555554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=114.69 Aligned_cols=154 Identities=16% Similarity=0.068 Sum_probs=115.7
Q ss_pred hHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHH
Q 010239 330 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVAL 409 (514)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (514)
..|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++... .++.+..++..
T Consensus 28 ~~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 101 (401)
T PRK11043 28 AFKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW-----VESAAQLLVLR 101 (401)
T ss_pred hHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHH
Confidence 33555677888 8889999999999999999999999999999999999888777776665543 22333333333
Q ss_pred HHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 410 LLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
.+.+.+... ..+....++.|.+|++.++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..+..+..
T Consensus 102 ~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 102 FVQAVGVCS-AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHhhhHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 333222222 2233346778999988899999999988899999999999999999999998888877777665555443
Q ss_pred C
Q 010239 490 X 490 (514)
Q Consensus 490 ~ 490 (514)
.
T Consensus 181 ~ 181 (401)
T PRK11043 181 K 181 (401)
T ss_pred C
Confidence 3
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-10 Score=109.84 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=119.6
Q ss_pred ccCCchhhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHHHHhhhhhh
Q 010239 89 YDLSSVEIGLITS-GSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVT---ALA-PDFIIMVVGRFVFGIGIGL 163 (514)
Q Consensus 89 ~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~~~ 163 (514)
+|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+.+.-++..++.|.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7999999999874 6678999999999999999999998877766655544332 232 4555556667776766676
Q ss_pred hhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCc
Q 010239 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237 (514)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 237 (514)
..+...++..+..+++.+++..++.++...+|..+++++.|.+.+.. ||+..|.+.++++++..+...+++++
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777889999999999999999999999999999999999999987 99999999998888876666555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.8e-11 Score=115.97 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=107.2
Q ss_pred ChhHHHHhHHHHH-HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhccCC
Q 010239 323 GQPSVLYYAASIL-QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+++....+.+.++ ++.|. +..+++..............+++|+++|| +|||+.+..+..+..++..++.+. .+
T Consensus 36 ~~y~~~~~l~~yl~~~lg~-s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----~~ 110 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGM-SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----GH 110 (500)
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----cc
Confidence 3445556666665 56777 66677776666655555556789999999 599999999988888876665531 12
Q ss_pred cchHHHHHHHHHHHHhhcccccccceeeccccchh--hhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHH
Q 010239 401 VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVI 478 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 478 (514)
..+.......+.+. ......+...++..|.+|++ .+..++++.+...++|..++|.+.|.+.+..||++.|.+.++.
T Consensus 111 ~~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 111 DAGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred cHHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 22222222233332 23333455557889998754 3456888889999999999999999999999999999887755
Q ss_pred HHHHH
Q 010239 479 AVLSL 483 (514)
Q Consensus 479 ~~~~~ 483 (514)
.+++.
T Consensus 190 ~~i~~ 194 (500)
T PRK09584 190 MLITV 194 (500)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-11 Score=109.85 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=121.7
Q ss_pred HHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHH
Q 010239 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAV 406 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
+..++-.++++.+. .+.--|........+.++.-++.+++.+|+|+-+++..++.+..+-++.+..+ .++|..+
T Consensus 390 v~tFLfWHled~~~-~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~vL 463 (618)
T KOG3762|consen 390 VFTFLFWHLEDLGG-IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMVL 463 (618)
T ss_pred HHHHHHHHHhhcCC-cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchhee
Confidence 33444456788876 66677788888889999999999999999999999999988888877776653 4566655
Q ss_pred HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHH-HHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHH
Q 010239 407 VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 485 (514)
..=.+-+......+..+ .+|+....|++.++++.++.... ..+|-.+|++++|.+.+.+|-+..|.++++.+++.+++
T Consensus 464 Pieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 464 PIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred eHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 55555555555555444 48999999999999999999887 57888899999999999999888998888877776655
Q ss_pred hCC
Q 010239 486 IFX 488 (514)
Q Consensus 486 ~~~ 488 (514)
...
T Consensus 543 ~~~ 545 (618)
T KOG3762|consen 543 FIS 545 (618)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=119.19 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=115.1
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHh
Q 010239 337 SAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 416 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
+.+. +..+.+.+.+...++..++.++.|++.||+|+|+.+..+.++..++.++..... ....+..+ ..-++.+..
T Consensus 70 ~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~-~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKW-SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GGGIALVV-FCRVIQGLA 144 (465)
T ss_pred CCCC-CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---HcCchHHH-HHHHHHHHh
Confidence 3455 677889999999999999999999999999999999988877777666543221 11223333 333333444
Q ss_pred hcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-hCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 417 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 417 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.....+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. .||+..|++.+++.++..++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 4445566678999999999999999999999999999999999999988 49999999988877766655554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=111.22 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=104.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhhhhhHHHH
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMVVGRFVFGIGIGLAMHAAPM 170 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 170 (514)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++..++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999888888777665 46677788889999999999999999
Q ss_pred HHhhcCC-------CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccch
Q 010239 171 YIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGW 213 (514)
Q Consensus 171 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 213 (514)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+.. ||
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~-G~ 383 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII-GY 383 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9998865 456799999999999999999999999988654 44
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=110.04 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=109.0
Q ss_pred HHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHH
Q 010239 328 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
....+.+.++.+. +....++......+...+..++.|+++||+|||+++..+..+.+++.+++... .+ . +.
T Consensus 23 ~~~~~~~~~~~~~-s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~~-~--~~ 93 (393)
T PRK11195 23 LFAAIALLKELHY-PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----IH-P--LL 93 (393)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----HH-H--HH
Confidence 3344455677777 77788999999999999999999999999999999999988877766654331 11 1 22
Q ss_pred HHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHH
Q 010239 408 ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLA 484 (514)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 484 (514)
.. ++.+.......|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+.. +...+.+.+.+.+++.+
T Consensus 94 ~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 94 AY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL 168 (393)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 22 23344444556777789999999999999999999999999999999999998854 55555555444444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-09 Score=101.15 Aligned_cols=314 Identities=16% Similarity=0.124 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCC
Q 010239 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP 179 (514)
Q Consensus 100 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 179 (514)
.++-+..+.+++++.+.+.|+.|.|..++++...+....+..-+ +|-+-++.+-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888889999999999999999999999999999988887755 55677888999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhhhhhcccc-------cch-hHHH----------HhhHHH---HHHHHHHhhcccCch
Q 010239 180 MRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-------AGW-RYMY----------GASTPL---AVIMGMGMWWLPASP 238 (514)
Q Consensus 180 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------~~w-r~~f----------~~~~~~---~~~~~~~~~~~~e~~ 238 (514)
++.+..++..+....+.++|..+-..+.... .+- |+.+ .+.+++ ..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 9999999999988888888876655443211 011 1111 111111 111111122222211
Q ss_pred hHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHH---HhhhchhhHHHHHHHH
Q 010239 239 RWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLRE---VFHGKCLKALIIGAGL 315 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 315 (514)
. ...++ . .+.......+. ++++++...+......
T Consensus 215 ~-~~~~~-----------------------------------~-------~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 215 V-VNCKS-----------------------------------S-------SETSFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred h-hhhhh-----------------------------------h-------ccccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 0 00000 0 00011112222 3333322222222211
Q ss_pred HHHHHhhChhHHHHhHHHHH--HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH---hCCchhhhhhHHHHHHHHHH
Q 010239 316 VLFQQITGQPSVLYYAASIL--QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER---LGRRPLLLGGVSGIVISLFL 390 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~r~~~~~~~~~~~~~~~~ 390 (514)
..+... .....|...+. ...+..+..-.++.....+++.+++....+.+.+| +|+++.+.++..+..+.+++
T Consensus 252 tG~~~S---f~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 252 TGLETS---FWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHH---HHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 111111 11222222221 12333344556667777788888888888888766 57788888777777666665
Q ss_pred HHHhhhccCC------------cchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 391 LGSYYLFLDD------------VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 458 (514)
Q Consensus 391 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 458 (514)
.-+......+ ..........+..+..-.++....+.++...+| +.|.++.++.-+-..+++.+.-..
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhh
Confidence 5432211010 112233333444555555666666788888886 779999999888887777665555
Q ss_pred chH
Q 010239 459 FSP 461 (514)
Q Consensus 459 ~g~ 461 (514)
.+.
T Consensus 408 ~~~ 410 (461)
T KOG3098|consen 408 SPY 410 (461)
T ss_pred hhh
Confidence 443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=110.39 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=135.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRR--RELILAALLYLVGALVTAL--------APDFIIMVVGRFVFG 158 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G 158 (514)
+|++..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 9999999888776666665 677888999999999
Q ss_pred hhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCc
Q 010239 159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237 (514)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 237 (514)
+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..++-|+.+....++.++.+++.++++.+
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999999999999999999999999999999999999999987679999998888888877777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=115.46 Aligned_cols=136 Identities=21% Similarity=0.139 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhhhhhHHHHHHhhcCC
Q 010239 100 TSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDF--IIMVVGRFVFGIGIGLAMHAAPMYIAETAP 177 (514)
Q Consensus 100 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 177 (514)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556777889999999999999999999999999998888776654 555566677778888888899999999999
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCch
Q 010239 178 TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238 (514)
Q Consensus 178 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 238 (514)
++.|+.++|+.+....+|.+++|.+.+ +.+ . ++..++++.++..++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988 433 3 678888888888888777777888864
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=115.72 Aligned_cols=139 Identities=13% Similarity=-0.002 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHhhhhhhhhhHHHHHHhhcC
Q 010239 101 SGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETA 176 (514)
Q Consensus 101 s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 176 (514)
.+..++..++.+++++++||+|||++++++..+.+++.++.++..+ ...+...-+...++.....+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566778899999999999999999988888777766654321 111111111112222223456667789999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc---------cchhHHHHhhHHHHHHHHHHhhcccCchh
Q 010239 177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV---------AGWRYMYGASTPLAVIMGMGMWWLPASPR 239 (514)
Q Consensus 177 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 239 (514)
|.+.|+++.++.+....+|.++++.+.+.+.+.. .++...|++.++++++..+..+++||+..
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 9999999999999999999999999999887732 14567788888877776556667898743
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=109.44 Aligned_cols=141 Identities=19% Similarity=0.044 Sum_probs=111.8
Q ss_pred ccCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHhhhh
Q 010239 89 YDLSSVEIGLITSGSL-YGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------APDFIIMVVGRFVFGIGI 161 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~ 161 (514)
.|.++.++|++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 7999999999988876 466778999999999999999998877766443333221 123344455566677778
Q ss_pred hhhhhHHHHHHhhcCCC-CcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHH
Q 010239 162 GLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 162 ~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 230 (514)
+...+...+.+.+..++ +++++.+++.++..++|..+||.+++.+.+.. ||+..|++.+++.++..+.
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHH
Confidence 88888888888788776 78999999999999999999999999999987 8999999888777665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-10 Score=102.78 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=109.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|+++.+.++..+.+..+..+|.+..+++.||+|+|+++.++..+..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988888888776666554433 345568899999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHH
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAV 225 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 225 (514)
.+...+..|++ .+.+.++. ....+|..+.|++.|.+.+.. |.+..|++..+..+
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPCYL 305 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 99999988754 46677775 566789999999999999987 88888875554433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-10 Score=107.93 Aligned_cols=158 Identities=15% Similarity=0.012 Sum_probs=117.8
Q ss_pred hHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 325 PSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
.......|.+.++.+. +..+.++..+...++..++++..|++.||+|||+.+..+..+.+++.+++.... ..++.+.
T Consensus 20 ~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--~~~~~~~ 96 (410)
T TIGR00885 20 DITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--EIMNYTL 96 (410)
T ss_pred HhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--hhccHHH
Confidence 3445667888888888 888999999999999999999999999999999999999999888877653221 1123333
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-------------------
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL------------------- 465 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------- 465 (514)
.+...++.+.+.+... +....++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 97 ~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (410)
T TIGR00885 97 FLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS 175 (410)
T ss_pred HHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence 3444444443333333 34446778888999999999999999999999999998877422
Q ss_pred -------hCcchhhHHHHHHHHHHHHHh
Q 010239 466 -------LGAGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 466 -------~g~~~~~~~~~~~~~~~~~~~ 486 (514)
.+|+.+|++.+++.++..++.
T Consensus 176 ~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 176 AIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888777666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=112.11 Aligned_cols=174 Identities=19% Similarity=0.195 Sum_probs=153.8
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILG--RRRELILAAL 132 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~ 132 (514)
++.+++..+......+....+|...++ .+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..++++
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~~-------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll 373 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAKS-------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL 373 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH
Confidence 444455555555556666677877777 8999999999999999999999999999999988 5677888899
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccc
Q 010239 133 LYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAG 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 212 (514)
+.+++.+.++++++++.++..-.+.|++.|........++.|..+.++-..+.|+.....+++.++||++++.+.+...+
T Consensus 374 ~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~ 453 (509)
T KOG2504|consen 374 IAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN 453 (509)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999998867
Q ss_pred hhHHHHhhHHHHHHHHHHhhccc
Q 010239 213 WRYMYGASTPLAVIMGMGMWWLP 235 (514)
Q Consensus 213 wr~~f~~~~~~~~~~~~~~~~~~ 235 (514)
|...|+..++..++....++..+
T Consensus 454 Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 454 YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999988777777665
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=102.45 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=125.0
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
...+....+.+-++.++ ++.+.+++..+..+.+.+.++..|.+.||+|.|++...+.++..+-++.+++... ..+.+
T Consensus 30 W~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~--~~~~~ 106 (417)
T COG2223 30 WTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT--YPSTW 106 (417)
T ss_pred HHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc--CCchH
Confidence 33555555666688888 9999999999999999999999999999999999999999888888777765422 22223
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC---cchhhHHHHHHHH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG---AGILFYAFGVIAV 480 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~ 480 (514)
..+ .+.++.+..+..+ .+....+++.+|++++|.++|+.. .+++|..+...+.+.+....| |+....+.....+
T Consensus 107 ~ll-~~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~ 183 (417)
T COG2223 107 QLL-VIGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA 183 (417)
T ss_pred HHH-HHHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333 3333333444344 355588999999999999999999 999999999999999999888 7877777777777
Q ss_pred HHHHHhCCCCC
Q 010239 481 LSLAFIFXXXX 491 (514)
Q Consensus 481 ~~~~~~~~~~~ 491 (514)
+..+..++..+
T Consensus 184 v~~v~~~~~~~ 194 (417)
T COG2223 184 IAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHhC
Confidence 76666655544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-11 Score=95.68 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccc
Q 010239 352 LLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEV 431 (514)
Q Consensus 352 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
...++.+++.++.+++.||++||+.+..+.....++.+.+.. ..+.+.......+.+.+.+ ...+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----SSNITVLIIARFLQGFGAA-FALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 456778889999999999999999998887777776665543 1333433333333333333 3345556788999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCC
Q 010239 432 FPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXX 492 (514)
Q Consensus 432 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (514)
+|+++|+++.++.+....++..+++.+.+.+.+..+|+..+++.+.+.+++.+..+...+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999998888888888887777777666655543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.3e-08 Score=90.59 Aligned_cols=339 Identities=12% Similarity=-0.022 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh--------h----hHHHH---HHHHHHHhhhh
Q 010239 97 GLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--------P----DFIIM---VVGRFVFGIGI 161 (514)
Q Consensus 97 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~----~~~~l---~~~r~l~G~~~ 161 (514)
+...-.-.+...+.++..|.+.||..|.+++..+++..-++..+++.. + +-+.. ++.-.+.|.-.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 333344455677888899999999999998877766554443333221 1 11112 22112222111
Q ss_pred hh-hhhHHHHHHhhcC------CCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHh-hc
Q 010239 162 GL-AMHAAPMYIAETA------PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WW 233 (514)
Q Consensus 162 ~~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~ 233 (514)
-. ......++=.||. +++.+.+..+...-.--+..+++|++.|.+.... +.+....+.++..++..+.= ++
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222223443 2445566677777777788999999999998876 88888777777776643322 22
Q ss_pred c----cCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHH
Q 010239 234 L----PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKAL 309 (514)
Q Consensus 234 ~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (514)
+ ...|. +..++++++.+.....+ ..+ .........+.....-......|+.-++.+.+...
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas 264 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEE----------SSS----ESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS 264 (432)
T ss_pred HHHHHHhChH-hcCCCCCcccccccccc----------ccc----cccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH
Confidence 1 12221 22111111111100000 000 00000000001011111123445555665554443
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLF 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 389 (514)
+....+++. ..+ +......|+...|+ +....+..-....+.++.+.++..++.+|+|..+.-..+.....++..
T Consensus 265 ~alalLY~T-VLs----f~~lmt~yl~~~G~-s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 265 FALALLYFT-VLS----FGGLMTAYLKSQGY-SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHH-Hhc----CcHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 333333322 222 23344455667788 888999999999999999999999999999988877777665555554
Q ss_pred HHHHhhhccCCc-chHHH---HHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 390 LLGSYYLFLDDV-PAVAV---VALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 457 (514)
Q Consensus 390 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 457 (514)
+....++....+ ..... +......=.+--++-....-+.+|.+|+++||+..|+-+...++...+--.
T Consensus 339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 443333333322 11111 111111111111222233467899999999999999999998888665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=103.75 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=136.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
+|++..+..++.-...+..++|++++|+|.||+|.|+++.+++++..+.++...+...-..+.+.-.+.|...|..+..+
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S 362 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS 362 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999988887777777778889999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCc
Q 010239 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPAS 237 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 237 (514)
.++..+..|+++-++.+|+++...-.+..+||.+.+.+.+..++-|..+....++.++..+..+++|++
T Consensus 363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999999999877788988888877777777777777764
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-10 Score=108.38 Aligned_cols=125 Identities=22% Similarity=0.157 Sum_probs=94.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-H---HhhhhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV-T---ALAPDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~r~l~G~~~~~~ 164 (514)
+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+.... . ...+++..+.+..++.|++.+..
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (434)
T PRK15075 269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY 348 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 6888888999999999999999999999999999999988765544332211 1 11234444555566677777777
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHH-HHHHHHHHHHHhhhhhcccccchh
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
.+....++.|.+|+++|+.++++... +..++..++|.+.+++.+.. +++
T Consensus 349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~~ 398 (434)
T PRK15075 349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GDK 398 (434)
T ss_pred HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CCc
Confidence 77777889999999999999999654 44445778999999998876 653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-09 Score=92.18 Aligned_cols=159 Identities=20% Similarity=0.168 Sum_probs=126.9
Q ss_pred ccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-----
Q 010239 70 STSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA----- 144 (514)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----- 144 (514)
.++..-|.+++. +|+|.++...+.+.-.+|..+| ++.|.+.|++|++.++.+|.+...+|..+...+
T Consensus 20 ~Fs~yS~~Lk~~-------l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 20 TFSAYSPQLKSR-------LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred chhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 445556777777 9999999999999999999874 889999999999999999999999999887763
Q ss_pred --hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHH
Q 010239 145 --PDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222 (514)
Q Consensus 145 --~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~ 222 (514)
.++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...+++..+-..+...+.+.. .-+..+.+...
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~ 169 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVL 169 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHH
Confidence 467899999999999988777887777788998 57999999999999999888777776666543 45555555555
Q ss_pred HHHHHHHHhhcccCch
Q 010239 223 LAVIMGMGMWWLPASP 238 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~ 238 (514)
+.++.++..++++..|
T Consensus 170 ~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 170 PAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHHhhheeccC
Confidence 5555555555555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-10 Score=113.70 Aligned_cols=178 Identities=13% Similarity=0.026 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHH
Q 010239 311 IGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFL 390 (514)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 390 (514)
+...+..+...........-.+.+-++++. +..+.|++.+...++.+++.++.+++.||.+||+.+.++.++.+++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 333333443333334555566777778888 7888999999999999999999999999999999999999999999888
Q ss_pred HHHhhhccC---------------------------------------------CcchHHHHHHHHHHHHhhcccccccc
Q 010239 391 LGSYYLFLD---------------------------------------------DVPAVAVVALLLYVGCYQLSFGPIGW 425 (514)
Q Consensus 391 ~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (514)
+++...... ...+..+++.-++.+.......++..
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 765321100 00122333333444444445556777
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh----------------------CcchhhHHHHHHHHHHH
Q 010239 426 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL----------------------GAGILFYAFGVIAVLSL 483 (514)
Q Consensus 426 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~ 483 (514)
+++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.. +|+..|++.+++.++..
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643 14445777776666655
Q ss_pred HHhCCC
Q 010239 484 AFIFXX 489 (514)
Q Consensus 484 ~~~~~~ 489 (514)
+..+++
T Consensus 275 v~l~~~ 280 (633)
T TIGR00805 275 IPFFFF 280 (633)
T ss_pred HHHHhC
Confidence 544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=107.09 Aligned_cols=147 Identities=13% Similarity=-0.005 Sum_probs=97.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA--L--APDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~~~~ 164 (514)
+|.+..+.++..++..++..+++++.|+++||+|||+++.++.++.++..+... . .++....+..-.+.+++.+..
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY 353 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 688888999999998888899999999999999999988776665443332221 1 123332222223333344444
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHHHHHH-HHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccC
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 236 (514)
.+....++.|++|++.|+.++|+.+....+ .....|.+.+.+ +..+.|...++..++..++..+..+++++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 556678899999999999999998866554 334477777755 43324666666666666665555555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=103.58 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=127.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHH
Q 010239 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAP 169 (514)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 169 (514)
+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.+++++=.+++++++|.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcchhHHhHH-HHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccCc
Q 010239 170 MYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPAS 237 (514)
Q Consensus 170 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~ 237 (514)
.++++.+|++..++...+. +.+.++|..+.+.++|.+.|+. |.+..|++.+.+.++..++..+ ++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999988777777774 7889999999999999999998 9999999999887775555444 5443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=102.87 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=125.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccc
Q 010239 342 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
+..+.|+++....+..++.+++.|.+.||+|+|..+++|+..+..+.+++++ .++.+..+++-.+-+.+.....
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-----g~sy~~l~vAR~LQgvgsA~~~- 177 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-----GNSYPMLFVARSLQGVGSAFAD- 177 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-----cchhHHHHHHHHHhhhhHHHHH-
Confidence 5678999999999999999999999999999999999999999999999886 3455555555555444444443
Q ss_pred cccceeeccccchhh-hhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCc
Q 010239 422 PIGWLMISEVFPLRL-RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSF 497 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (514)
....+++++.+|.+. |++++|+.-.+..+|-.++|.++|.+++..|+..+|+++++++++-..+.++..+.++.+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 455688999999765 6999999999999999999999999999999999999999999998888777666554433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=104.55 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=100.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 566655555555555677888999999999999999999999999888888777653 677777888899999999999
Q ss_pred HHHHHHhhcCCCC-------cchhHHhHHHHHHHHHHHHHHHhhhhhccc
Q 010239 167 AAPMYIAETAPTP-------MRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209 (514)
Q Consensus 167 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 209 (514)
...++.+|..+.+ ++|...++.+....+|..+|+.+.+.+.+.
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 359999999999999999999998887653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=105.82 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=108.6
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhcc-CCcc
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFL-DDVP 402 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 402 (514)
.+.+..+.+.+.+++|. +..+.+........ .....++.|++.||+|+|+++.++.++..++.+++++..... ..+.
T Consensus 43 ~y~fsv~s~~L~~~lgl-s~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 43 MYAFNLISGAMQARYNL-TQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 34566778888888888 77777777665333 334566789999999999999999999999888777531110 1233
Q ss_pred hHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHH
Q 010239 403 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLS 482 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 482 (514)
+...+...+.+.+.+. ..+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++.
T Consensus 121 ~~l~l~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 121 VRLSVYNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 3333333333333222 22333356678888 679999999999999999876666655554 35666777777776666
Q ss_pred HHHhCCCCC
Q 010239 483 LAFIFXXXX 491 (514)
Q Consensus 483 ~~~~~~~~~ 491 (514)
.++.+.+.+
T Consensus 198 ~ll~~~~vr 206 (591)
T PTZ00207 198 GILAIVFMR 206 (591)
T ss_pred HHHHHhhee
Confidence 555554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-10 Score=107.89 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=109.7
Q ss_pred HHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHH
Q 010239 328 LYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVV 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
..-++++..+.|. ..+..++.+...+...++.++.|+++|.+|||+.++.+.++..++.++.+. .++....+.
T Consensus 64 a~~l~~I~~diG~--~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-----A~~~~~~ia 136 (599)
T PF06609_consen 64 ASILPYINADIGG--SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT-----AQNMNTFIA 136 (599)
T ss_pred HHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc-----CCcHHHHHH
Confidence 3445667778875 456777888889999999999999999999999999999999998887763 233334444
Q ss_pred HHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhC
Q 010239 408 ALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
...+.+.+.+. ..+....++|..|.+.|..+.++.....-....+++.+...+..+.+|++.|++..+...++++..+
T Consensus 137 g~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 137 GMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 44444433322 2233456899999999988877766555444456666666666667899999988877766665544
Q ss_pred CCC
Q 010239 488 XXX 490 (514)
Q Consensus 488 ~~~ 490 (514)
+++
T Consensus 215 ~fY 217 (599)
T PF06609_consen 215 FFY 217 (599)
T ss_pred HHh
Confidence 433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=103.33 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=111.3
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh-----CCchhh-hhhHHHHHHHHHHHHHhhhccC
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-----GRRPLL-LGGVSGIVISLFLLGSYYLFLD 399 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
....-.|.+.++.|. +..+.+..... .+...+ .++.|+++||+ ||||.+ ..+.++.+++...+++ ....
T Consensus 6 ~~~~~~~~~~~~~g~-s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~~~ 80 (356)
T TIGR00901 6 LVGNTLPYWLRSKNV-SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LVPS 80 (356)
T ss_pred hHHhHHHHHHHHcCC-CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CCcc
Confidence 445567888899988 77788877644 344443 88999999998 788864 4555555555444432 1111
Q ss_pred CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC--------cchh
Q 010239 400 DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG--------AGIL 471 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~~ 471 (514)
...+... ...+..+.......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |+..
T Consensus 81 ~~l~~l~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 81 TDLPLLA-GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 2222222 222222333333345556889999999999999999999999999999999999988888 9989
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 010239 472 FYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
|++.+++.++..+..++..+|.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 9888887777665555444553
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=102.69 Aligned_cols=170 Identities=17% Similarity=0.033 Sum_probs=120.6
Q ss_pred HHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh-----CCch-hhhhhHHHHHHHHHH
Q 010239 317 LFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERL-----GRRP-LLLGGVSGIVISLFL 390 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~-~~~~~~~~~~~~~~~ 390 (514)
++.+...+.....-+|.++++.|. +.++.+++...... .+..++.|+++||+ |||| .+..+..+.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~-~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGL-DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 334444556677788999999999 88888888666654 68899999999999 7765 676767777666665
Q ss_pred HHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-hCcc
Q 010239 391 LGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAG 469 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~ 469 (514)
+.+. ....+.+......++ .+.+.....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. .||+
T Consensus 85 l~~~--~~~~~~~~l~~~~~~-~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 85 MAFC--PPHAALWPLAGLAVL-VAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHhc--CccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 5432 111222323222223 33444445566678899999999999999999999999999999999988885 4899
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 470 ILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
..|++.+++.++..+... ..+|+
T Consensus 162 ~~f~i~a~~~l~~~l~~~-~~~e~ 184 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTL-WAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCC
Confidence 999988877766554433 34443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-09 Score=101.25 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh----HhCCchhhhhh-HHHH
Q 010239 310 IIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVE----RLGRRPLLLGG-VSGI 384 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~~~ 384 (514)
+.........+++ +.....+.+.++++.|. +....+.......+..++..++.|+++| |+|||+.++.. ....
T Consensus 7 i~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 7 LRVASVAAGVQFG-WALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 3333334444443 34556677778889998 8899999999999999999999999999 59999988764 4555
Q ss_pred HHHHHHHHHhhhcc--------CCc-c---hHHHHHHHHHHHHhhcccccccceeeccccchhhh--hhHHHHHHHHHHH
Q 010239 385 VISLFLLGSYYLFL--------DDV-P---AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR--GRGLSVAVLVNFG 450 (514)
Q Consensus 385 ~~~~~~~~~~~~~~--------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~ 450 (514)
.+++++++..-... ... . +..+..+.+..........|. .+++.|.+|+++| +.+.++.+....+
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 55555544311000 000 1 111222222233333333344 5899999998755 6799999999999
Q ss_pred HHHHHHHhchHh--HHhh-------------CcchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 451 ANALVTFAFSPL--KDLL-------------GAGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 451 g~~~~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
|+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999999887764 2222 4556788888888888888877777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=95.52 Aligned_cols=144 Identities=16% Similarity=0.237 Sum_probs=120.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPD--------FIIMVVGRFVFGI 159 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~ 159 (514)
+|.+.+....+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 68888888889999999999999999999996 79999999999999999988877421 2346678888999
Q ss_pred hhhhhhhHHHHHHhhcCCCC---cchhHHhHHHHHHHHHHHHHHHhhhhhcccc------cchhHHHHhhHHHHHHHHHH
Q 010239 160 GIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFIVLGMVGGYGIGSLLVDLV------AGWRYMYGASTPLAVIMGMG 230 (514)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~wr~~f~~~~~~~~~~~~~ 230 (514)
|.|+.-+...+...|.++++ +|...+.++..+.++|.++++++..++.+.. .+|...|.+.++..++..++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 3677899999999999999999988886321 26999999999888876555
Q ss_pred hh
Q 010239 231 MW 232 (514)
Q Consensus 231 ~~ 232 (514)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 44
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=116.88 Aligned_cols=186 Identities=15% Similarity=0.001 Sum_probs=116.5
Q ss_pred HHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhh
Q 010239 299 EVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLL 377 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 377 (514)
.+++++.++++++..++..+........+..+..+.+.. .+.......++..+...+..++..+++|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 466777777766665555444322222222232222222 1111223467777788888999999999999999999976
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 010239 378 LGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTF 457 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 457 (514)
.....+..+...+....+. ..+.+..++.. ++.+.....+.|...+++.+.+|++.++.++|+.++...+|.++||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~--~~s~~~l~~~~-~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~ 162 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFH--LNSVPLLFAAL-FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI 162 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhHHHHHHHH-HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH
Confidence 4422222221111111111 13344444443 34444444556777899999999999999999999999999999999
Q ss_pred hchHhHHhhCcchhhHHHHHHHHHHHHHhC
Q 010239 458 AFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487 (514)
Q Consensus 458 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 487 (514)
+.|.+.+..+|...|...+++.+++.++.+
T Consensus 163 l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1140)
T PRK06814 163 IGGLATISGNFVILVALLMGIAVLGWLASL 192 (1140)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHh
Confidence 999999988988777444444444444333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=104.05 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=107.0
Q ss_pred ccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010239 74 ATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPDFIIMVV 152 (514)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (514)
.+|.+.++ .|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++.....
T Consensus 219 ~lp~~~~~-------~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (355)
T TIGR00896 219 WLPAILIS-------HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA- 290 (355)
T ss_pred HHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence 34555555 688999999999999999999999999999999 567777788888888877777665433322
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhcCC-CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhH
Q 010239 153 GRFVFGIGIGLAMHAAPMYIAETAP-TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (514)
Q Consensus 153 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 215 (514)
.-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.++|.+
T Consensus 291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4567899999998888777766554 46678999999988999999999999999987655653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-09 Score=98.00 Aligned_cols=137 Identities=13% Similarity=0.011 Sum_probs=110.8
Q ss_pred HHHHhHHHHHHHcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 326 SVLYYAASILQSAGFSAASD-ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
...+-.|++.++.|+ +..+ .+.+...+..+..+..+..|+++||+|.|+++..+.+...+..+++++. .+.+.
T Consensus 44 n~s~a~p~L~~elgl-T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~Sl~~ 117 (511)
T TIGR00806 44 GESFITPYLLTVLNF-TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----TSVWH 117 (511)
T ss_pred hHHHHHHHHHHHcCC-CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 556667888888998 7777 9999999999999999999999999999999999998888888887752 23344
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchh
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGIL 471 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 471 (514)
..+.-++++.+-+..+ ....++...+|+++|+++.|+.+....+|.++++.+.+. ....||+..
T Consensus 118 L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 4444444444444433 556889999999999999999999999999999999999 556787653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-09 Score=101.35 Aligned_cols=136 Identities=10% Similarity=-0.054 Sum_probs=101.9
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
......+.|.+.++.+. +..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+++.... ..++.+
T Consensus 42 ~~~~~~~~p~i~~~~~~-s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~--~a~~~~ 118 (438)
T PRK10133 42 NNLNDILLPQFQQAFTL-TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--EIMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH--hcCCHH
Confidence 34566778888888888 889999999999999999999999999999999999999999888887653211 123344
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
..++..++.+.+.+... +....++.|..|++.+...+++.+....+|..+++.+.+.+.
T Consensus 119 ~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 119 LFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 344466778777676666899999999999999998876544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=118.01 Aligned_cols=138 Identities=21% Similarity=0.247 Sum_probs=120.9
Q ss_pred ccCCch-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSV-EIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+|.+.. +.|++.+...++..++++++|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.+...+.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 788888 9999999999999999999999999999999999999999988888888889999999999999999999999
Q ss_pred HHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHH
Q 010239 168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI 226 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 226 (514)
..+++.+.+|+++||+++++.+....+|.++++.+++.+.....++...|++.+.+.++
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888877654322566667666655444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-10 Score=98.82 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=95.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccc
Q 010239 342 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
+..-+|++.+.+.+...+.++..|.++||+|||.++.++.+..++...+.+. ..+...++..=+.++.+..-.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl- 138 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNL- 138 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCch-
Confidence 4457889999999999999999999999999999999999998887777664 233333333234444554444
Q ss_pred cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
.+..++++|.+++++|+.+++.++....+|.++||.++|++..
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4556999999999999999999999999999999999999987
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-08 Score=98.86 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=96.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhhhhh
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL-----APDFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655432 34567777888899999999999
Q ss_pred HHHHHHhhcCC-------CCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 167 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
...++++|..+ +++.|..++......-+|..+++.+.+++.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 3334668999999999999999999988875
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=97.28 Aligned_cols=149 Identities=21% Similarity=0.272 Sum_probs=120.0
Q ss_pred cc-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-hhHHHHH----HHHHHHhhhhh
Q 010239 89 YD-LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALA-PDFIIMV----VGRFVFGIGIG 162 (514)
Q Consensus 89 ~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~l~G~~~~ 162 (514)
.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...+.|+..+
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence 45 677788888888888999999999999999999999999999999998888887 5544433 34567999999
Q ss_pred hhhhHHHHHHhhcCCCCcchhHHhHHHH-HHHHHHHHHHHhhhhhccccc-----chhHHHHhhHHHHHHHHHHhh-ccc
Q 010239 163 LAMHAAPMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVA-----GWRYMYGASTPLAVIMGMGMW-WLP 235 (514)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~~-~~~ 235 (514)
....+...++.+..|++.|+++.+++.+ ..++|..+|..++|++.+..+ .|...+.+.+++.++..+++. +++
T Consensus 317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999876 478999999999999998651 345556666666555443333 344
Q ss_pred Cc
Q 010239 236 AS 237 (514)
Q Consensus 236 e~ 237 (514)
|+
T Consensus 397 ~~ 398 (400)
T PF03825_consen 397 PK 398 (400)
T ss_pred CC
Confidence 43
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=96.68 Aligned_cols=147 Identities=19% Similarity=0.150 Sum_probs=115.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHH--H
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP---DFI------IMVVGRFV--F 157 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l--~ 157 (514)
-|++..+..+......+...+..+++..+.||+|||+.++.+..+..+..+++.... +.. ..+++.++ .
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~ 379 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999988888776642 111 12233333 3
Q ss_pred hhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHH-HHhhcccC
Q 010239 158 GIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMG-MGMWWLPA 236 (514)
Q Consensus 158 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e 236 (514)
.++.| .-|...-+.+|.+|++.|..++++.....-+...+-......+.+.. |= +.|++..+++++.. ..+..+||
T Consensus 380 ~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 380 SFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-GP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 33333 45777889999999999999999999988888888777777776665 33 77888888887754 45556999
Q ss_pred ch
Q 010239 237 SP 238 (514)
Q Consensus 237 ~~ 238 (514)
+.
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 85
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=97.88 Aligned_cols=118 Identities=22% Similarity=0.334 Sum_probs=93.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHH-HHHHHHHHHHHHHHHhhhhH----------------
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI----LGRRREL-ILAALLYLVGALVTALAPDF---------------- 147 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~~---------------- 147 (514)
+|++....+.+--..-+...+.+++.|..+|| |||||.+ ..+.+..+++.++.+++.++
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 68888888888888888888999999999995 8987655 45667777888888887654
Q ss_pred -HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchh-HHhHHHHHHHHHHHHHHHhhhhh
Q 010239 148 -IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ-LISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 148 -~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
..++++--+.=++.-.....+.+++.|...++++.+ +++.+....++|..+|..++++.
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 344445555556666778889999999997766666 99999999999999999988855
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-06 Score=81.22 Aligned_cols=116 Identities=5% Similarity=-0.055 Sum_probs=92.0
Q ss_pred CchhhHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh----h---------------------
Q 010239 92 SSVEIGLITSGSLYGALIG-SILAFNIADILGRRRELILAALLYLVGALVTALA----P--------------------- 145 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--------------------- 145 (514)
+...+.++.+...+...+. .++.+++++|++|++++-+....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467889999888877777 8999999999999999888777777766666654 1
Q ss_pred ------hHHHHHHHHHHHhhhhhhhhh-HHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 146 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
+.|...+..+...+-...... .-..+.+|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444555555565555555 77889999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=95.35 Aligned_cols=154 Identities=33% Similarity=0.491 Sum_probs=125.6
Q ss_pred ccccccccccccccCCCCCCCccccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 66 YDIGSTSCATISIESPTLSGISWYDLSS--VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143 (514)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 143 (514)
.+.....+..+.+..+ ++.+. ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 16 LDLGLLSPALPLLLST-------LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HhcchHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666655 45454 47899999999999999999999999999999988888776777777777
Q ss_pred hhh--HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCC-CcchhHHhHHHH-HHHHHHHHHHHhhhhhccc-ccchhHHHH
Q 010239 144 APD--FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEF-FIVLGMVGGYGIGSLLVDL-VAGWRYMYG 218 (514)
Q Consensus 144 ~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~-~~~wr~~f~ 218 (514)
..+ .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 776 99999999999999999999999999999997 678999999888 5888899998887776653 227999776
Q ss_pred hhHHHHHH
Q 010239 219 ASTPLAVI 226 (514)
Q Consensus 219 ~~~~~~~~ 226 (514)
+.......
T Consensus 169 ~~~~~~~~ 176 (338)
T COG0477 169 LAALLGLL 176 (338)
T ss_pred HHHHHHHH
Confidence 66665544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=96.06 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchh
Q 010239 104 LYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQ 183 (514)
Q Consensus 104 ~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 183 (514)
.+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-..+.+.-|..-++.++.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 44566788999999999999999999999999999988877654444444444444455566777889999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcccCch
Q 010239 184 LISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASP 238 (514)
Q Consensus 184 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 238 (514)
..|.-....-+|.++.|+++ ...+ . +-..+..+.+.++++..++..++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e-~-s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAE-L-STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhc-c-ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999 3323 2 455666777778888778888877443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-08 Score=94.22 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 010239 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL--APDFIIMVVGRFVFGIGIGLAMHAAPMY 171 (514)
Q Consensus 94 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 171 (514)
...+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999999888766654443322 3577778888899999999999999999
Q ss_pred HhhcCCC-------CcchhHHhHHHHHHHHHHHHHHHhhhhhcccc
Q 010239 172 IAETAPT-------PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210 (514)
Q Consensus 172 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 210 (514)
++|..+. ++.|...+.......+|..+|+.+++.+.+..
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998852 23466788899999999999999999887643
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=86.33 Aligned_cols=133 Identities=18% Similarity=0.075 Sum_probs=105.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY-LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
||+|+...+-+.+....-.++.+++.|.++||+|++...+.+..+. .++.....+ +++.=..+..+.|+..+.....
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence 8999999999999999999999999999999999997776655444 344444333 3344456777889988877777
Q ss_pred HHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc--chhHHHHhhHHH
Q 010239 168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA--GWRYMYGASTPL 223 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--~wr~~f~~~~~~ 223 (514)
....++...|+++.|.+.|..++..++|..+.|++++.+.+..+ .|--.|.+....
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 78888999999999999999999999999999999999998653 244455444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=98.05 Aligned_cols=146 Identities=11% Similarity=0.010 Sum_probs=121.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccc
Q 010239 342 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
+..+.+++.+....+.+++.+.+|++.||+|-|+++..+.++.+++.++..+... ...+..+++-++.+.+.+.. .
T Consensus 71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~---~~~~~~~~~R~lqGl~~g~~-~ 146 (466)
T KOG2532|consen 71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS---IGFYLLLVLRFLQGLGQGVL-F 146 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---hcchhhHHHHHHhHHHHhHH-H
Confidence 6778899999999999999999999999999999999999999998888876532 22233344444444444444 4
Q ss_pred cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-hCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-LGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
|....+...-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+++..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 66678999999999999999999999999999999999999998 99999999999998887777655554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=85.31 Aligned_cols=148 Identities=18% Similarity=0.097 Sum_probs=105.7
Q ss_pred HHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHh
Q 010239 315 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSY 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 394 (514)
.......+..+.+..|.|.+-++.++ +..+...+.....++..+ .++.|.+.|++|.+.++.++.+...++..++...
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445567888999999999999 888888888888888876 4888999999999999999999998888877654
Q ss_pred hhccCCcchHHHHHHHHHHHHhhccc-ccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh
Q 010239 395 YLFLDDVPAVAVVALLLYVGCYQLSF-GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL 465 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 465 (514)
....-.....+..++..+.++.+.++ .........+.+| ++||++.|+.-....+++.+...+...+.+.
T Consensus 87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 43322212222333333333333222 2232244567888 6799999999999999999988888777664
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=97.80 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhHHHHH
Q 010239 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY 171 (514)
Q Consensus 94 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 171 (514)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999998886 99999999999999999999999999
Q ss_pred HhhcCCC-------CcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 172 IAETAPT-------PMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 172 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
++|..+. ++.|..+++......+|..+++.+.+.+.+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999873 345889999999999999999999888765
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-07 Score=84.61 Aligned_cols=136 Identities=15% Similarity=0.075 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 010239 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET 175 (514)
Q Consensus 96 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 175 (514)
.+.+.-+-.+...+..+.+.++.+|+..+.=+....+++.++.++.+++++.+.=+++-++.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 344555555666677777888899988665566777788889999999999999999999999999999888888754 5
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccC
Q 010239 176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA 236 (514)
Q Consensus 176 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 236 (514)
+++ ..++-+.++.+.+.++|+..-..+.....+-|..+.+...+.++..+..++ +|+
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 553 457888888888888888776666652124577888877777665555444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=85.14 Aligned_cols=178 Identities=24% Similarity=0.172 Sum_probs=140.5
Q ss_pred ccchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-h
Q 010239 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-G 122 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G 122 (514)
-|+.+..|.+.+...+-++.++...++ +|.+..| -|+|..+.|++.+...+.....++....+.+|. .
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n 272 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYIVIGW----LPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN 272 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHHHHHH----HHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666677666666665655555544 6777777 799999999999999999999999999999975 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCC-CcchhHHhHHHHHHHHHHHHHHH
Q 010239 123 RRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT-PMRGQLISLKEFFIVLGMVGGYG 201 (514)
Q Consensus 123 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~ 201 (514)
+|+..+...+++.+|.+.+.+.+....+.- -++.|+|.|..++.+..++.+..+. ++-++..++.+....+=..+||.
T Consensus 273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 778888888888888888888765433333 4899999999999999999988864 44466677777777777889999
Q ss_pred hhhhhcccccchhHHHHhhHHHHHHHHHHhhc
Q 010239 202 IGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (514)
Q Consensus 202 ~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (514)
+.|++-|..++|+...+..+...+++.+.-+.
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999998889999998888877776554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=93.27 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=111.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh-CCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhc
Q 010239 340 FSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQL 418 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (514)
+ +..++.-....+....=+..+++||++||+ |+|+.++.+.+++.++-++++... ........+.+.+.. ....
T Consensus 58 ~-~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~-iG~G 132 (498)
T COG3104 58 F-DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALII-VGTG 132 (498)
T ss_pred c-ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHH-hccc
Confidence 6 666777777777777777889999999995 999999999999999999887520 012233333333333 3333
Q ss_pred ccccccceeeccccchh--hhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCC
Q 010239 419 SFGPIGWLMISEVFPLR--LRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXX 494 (514)
Q Consensus 419 ~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (514)
.+=+....++.|++|++ +|-.++++..+..++|+.++|.+.+++.+..||...|...++-..++.+..+...+..+
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~ 210 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK 210 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhc
Confidence 44455568889998863 36778888888899999999999999999999999999988888888777666544333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-08 Score=95.25 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=109.0
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL----------APDFIIMVVGRFVFG 158 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G 158 (514)
+|.++.+.|++.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 7999999999999999999999999999999999999999999999998866432 134445566678899
Q ss_pred hhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc
Q 010239 159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV 210 (514)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 210 (514)
++.+........++.+..|+++++...++..+..++|..+++.+++.+.+..
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=80.74 Aligned_cols=315 Identities=17% Similarity=0.186 Sum_probs=164.4
Q ss_pred ccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010239 72 SCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMV 151 (514)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (514)
+|..-.+-+. ++....++|.+.-..+-...+...+.|-+.||-|||+.-+.-.+.+.+.++ .-.+++|-.++
T Consensus 57 gPYvYyLYst-------YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLm 128 (454)
T KOG4332|consen 57 GPYVYYLYST-------YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLM 128 (454)
T ss_pred Cceeeeeehh-------cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEe
Confidence 4445555555 788899999998888888899999999999999999965544444443332 33478899999
Q ss_pred HHHHHHhhhhhhhhhHHHHH-HhhcCCCCcchhHHhHHH--------HHHHHHHHHHHHhhhhhcccc-cchhHHHHhhH
Q 010239 152 VGRFVFGIGIGLAMHAAPMY-IAETAPTPMRGQLISLKE--------FFIVLGMVGGYGIGSLLVDLV-AGWRYMYGAST 221 (514)
Q Consensus 152 ~~r~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~ 221 (514)
++|++-|+..+..+.+.-++ +.|... +|+.---+.. .+..+-.+++.+.+..+.+.. .|--.+|-..+
T Consensus 129 VGR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa 206 (454)
T KOG4332|consen 129 VGRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA 206 (454)
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 99999999999988887775 556542 3333222221 122233334444444444422 13445555444
Q ss_pred HHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHH
Q 010239 222 PLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREV 300 (514)
Q Consensus 222 ~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (514)
.+..+...+.+ -.-|. ..++.+.++.... -+...+.+
T Consensus 207 cfLaigmAvil~~W~EN-----------------------------------ygdps~~kdlltq-------f~gaa~ai 244 (454)
T KOG4332|consen 207 CFLAIGMAVILSSWSEN-----------------------------------YGDPSENKDLLTQ-------FKGAARAI 244 (454)
T ss_pred HHHHHHHHHHHhhhhhc-----------------------------------cCChhhhHHHHHH-------hhHhHHHH
Confidence 44333211111 11111 0000000000000 00111112
Q ss_pred hhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc--hhhh
Q 010239 301 FHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR--PLLL 378 (514)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~ 378 (514)
..+. ++.+.-.+........+.....|.|.+-.+. ...--|.++..+.+..++|+-+..++..|-..| ..+.
T Consensus 245 aSD~---ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymq 318 (454)
T KOG4332|consen 245 ASDE---KIALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQ 318 (454)
T ss_pred hcch---HHHHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHH
Confidence 2221 1111112222222222223334555432111 123457778888888888888877776654433 4455
Q ss_pred hhHHHHHHHHHHHHHhhhccC--CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHH
Q 010239 379 GGVSGIVISLFLLGSYYLFLD--DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV 445 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 445 (514)
+.+....+.+.+..+.....+ .++...+..++++-.+.+..+ |...-+-.+..|.+.|++.+-...
T Consensus 319 ivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw-PSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 319 IVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW-PSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc-hHHHHHHHhhCCHHHHhhhhhhee
Confidence 555555554444333322211 233344555555555555544 555567788889888886554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-08 Score=98.54 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=112.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccc
Q 010239 342 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
+.....+..++..++.++|+++.|.++||+|||+++..+.++..++.+..++ ..+.+...+.-++.+ .+..+..
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~-----a~~~~~~~~~Rfl~G-~~~~~~~ 189 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF-----APNYWMFLIFRFLSG-FFGSGPL 189 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHH-hhccchh
Confidence 5667888899999999999999999999999999999999999988876665 344454454444444 4444444
Q ss_pred cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
.+.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|++.+++.....++..++ +++.+|.
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 5667899999999999999999 88888888999999888887 8888888887777766655 3334444
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=78.30 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=90.1
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHH-
Q 010239 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD-----ILGRRRELIL- 129 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~~- 129 (514)
.+.+-+...|...+... .+|.+.+. =|+|.++.+...-++ .. ..--++|.++.| |+||||..++
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 33455678888888887 88888875 477877776433222 12 233578889999 9999987554
Q ss_pred HHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHH
Q 010239 130 AALLYLVGALVTAL-----------APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 130 ~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 198 (514)
+..+.+....+.+. .++...+...-++.-+.++....+.-.+.-.+..+++.|-+......+...|.++
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL 184 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL 184 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence 33333433333333 1233334445566667777777888888888888888887777666666666666
Q ss_pred HHHhhhhh
Q 010239 199 GYGIGSLL 206 (514)
Q Consensus 199 g~~~~~~l 206 (514)
+..+.-.+
T Consensus 185 ~~~ifLaL 192 (510)
T KOG3574|consen 185 GNVVFLAL 192 (510)
T ss_pred hcceeeEe
Confidence 65443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-07 Score=82.65 Aligned_cols=159 Identities=14% Similarity=0.017 Sum_probs=117.9
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
......|.+.+..+. +..+++++......+..+.++..+++.+|+|+|+-++.+..++++++.++.-.. ........
T Consensus 31 l~diLip~l~~~f~l-s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--~~~~y~~F 107 (422)
T COG0738 31 LNDILIPHLKEVFDL-TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--SSKSYGFF 107 (422)
T ss_pred cchhhHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHH
Confidence 445566777777777 889999999999999999999999999999999999999999999988874221 11222223
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh-------------------h
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL-------------------L 466 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~ 466 (514)
++.+++...+.+. .......++..+.|++..+.-+.+.+.++.+|++++|.+.+.+..+ .
T Consensus 108 L~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 108 LVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 3333333333332 2344457888899988888999999999999999999999998872 1
Q ss_pred CcchhhHHHHHHHHHHHHHhCC
Q 010239 467 GAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 467 g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
.++.++...+...++..+....
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh
Confidence 2556777777666665555443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=83.11 Aligned_cols=367 Identities=19% Similarity=0.171 Sum_probs=223.7
Q ss_pred ccCCchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIG-LITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
-|++..++. -+.-...-.+.+.-++.=.+.|-.-.|++++.-.+.......+.-+.++.+.+-+.-++.|...+ ...+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence 355555443 23344455666777777789999999999988887778888888889999999999999999877 6778
Q ss_pred HHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc-cchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhc
Q 010239 168 APMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAM 246 (514)
Q Consensus 168 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 246 (514)
-++++-+..+++++.++.+...++.-.|...|..++..++... .++...-.+......+.....+++|..+|.+.-+..
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 8899999999999999999999999999999999998887642 145555556655555666677778776654332221
Q ss_pred cccCCccccHHHHHHHHHHHhCCCCCCCCc-hhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChh
Q 010239 247 KRKGDMQDLRESAISCLCRLRGQSIGDSAP-TEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQP 325 (514)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (514)
+++.. ..+.++..+ .+..+... .....+.+-+++....+.++.+.+.+....++++
T Consensus 195 ~~~~~----------------v~~~e~~~~~~~~~~~l~-------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~ 251 (433)
T KOG3810|consen 195 EDKIS----------------VGDLEEMNPQASYMSYLR-------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYY 251 (433)
T ss_pred cccce----------------eccchhcCccchhhHHHH-------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhH
Confidence 11000 000000000 00000000 0011111112222223344555566666667777
Q ss_pred HHHHhHHHHHHHcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCc-hhh-hhhHHHHHHHHHHHHHhhhccCCcc
Q 010239 326 SVLYYAASILQSAGF-SAASDATRVSILLGLFKLIMTGLAVLVVERLGRR-PLL-LGGVSGIVISLFLLGSYYLFLDDVP 402 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
....|...+-++..- ....--|..=.+..+.+.++.+..|.+.-.+.|. ..+ .++....+...+.+. ..++.
T Consensus 252 QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----~t~~I 326 (433)
T KOG3810|consen 252 QVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----QTQHI 326 (433)
T ss_pred HHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----cccce
Confidence 777787776666531 1122234455566677778888888876555554 222 233333333222222 35667
Q ss_pred hHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-----------cchh
Q 010239 403 AVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-----------AGIL 471 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~~ 471 (514)
|+..+...++...+........ ..+++....+.-|..+|+..++.-+-..+-..+ ..|..| |..-
T Consensus 327 w~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Y 402 (433)
T KOG3810|consen 327 WVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSY 402 (433)
T ss_pred ehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeeh
Confidence 8778888888777776654333 445555566888888998887765554444433 333222 3345
Q ss_pred hHHHHHHHHHHHHHhCC
Q 010239 472 FYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (514)
|.+.+++.+++..+.+.
T Consensus 403 f~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 403 FIVLGVIFLIGFGIEYL 419 (433)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777665444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=92.03 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=112.7
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHH
Q 010239 336 QSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGC 415 (514)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (514)
++.+. ...+.+...+.+.++.+++.+.++.+.||++-.+.+....++..+..++-.. .++.+..++.- ++.+.
T Consensus 74 edl~~-~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-----~~s~~~~ialr-~llGl 146 (495)
T KOG2533|consen 74 EDLKL-VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-----VHSFPGLIALR-FLLGL 146 (495)
T ss_pred cccch-hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHH-HHHHH
Confidence 33444 5678899999999999999999999999999555554433333322222111 12344444444 44455
Q ss_pred hhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH------HhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 416 YQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK------DLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 416 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
+..+..|....++...+.+++|+.-+|+.+....+|+++|+.+...+. ...||++.|++-++++++..++++++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 555555666689999999999999999999999999999999988864 34689999999999999998888887
Q ss_pred CCCCCC
Q 010239 490 XXXXXX 495 (514)
Q Consensus 490 ~~~~~~ 495 (514)
.|+...
T Consensus 227 lp~~P~ 232 (495)
T KOG2533|consen 227 LPDNPS 232 (495)
T ss_pred ecCChh
Confidence 775433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-08 Score=68.54 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=74.7
Q ss_pred hcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 64 YGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL 143 (514)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 143 (514)
.|..+..+.|.+|.+++| .++|.++.|++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++
T Consensus 4 mGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999 8999999999999999999999999999999988999999999999999999999
Q ss_pred hhhHHHHH
Q 010239 144 APDFIIMV 151 (514)
Q Consensus 144 ~~~~~~l~ 151 (514)
.++.+.+.
T Consensus 77 ~~~~~~w~ 84 (85)
T PF06779_consen 77 THSFWLWS 84 (85)
T ss_pred HhchHHHh
Confidence 99877653
|
Note that many members are hypothetical proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=81.70 Aligned_cols=120 Identities=25% Similarity=0.328 Sum_probs=102.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~ 166 (514)
+|.++....+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455666777788888888888899999999999999999999999999999988876 788999999999999999999
Q ss_pred HHHHHHhhcCC-------CCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 167 AAPMYIAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 167 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
...++++|..+ .+.-|...+......=+|..++..+.++.+.
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988774 2333777888888888888888888777764
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-07 Score=90.47 Aligned_cols=140 Identities=19% Similarity=0.076 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccc
Q 010239 346 ATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGW 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (514)
.+++.+...++..++.++.|+++|++|||+.+.++.+...++.++.+.. .+.+..++.-++.+.+.+.... +..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~~-~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGASV-LAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhhh-cch
Confidence 4899999999999999999999999999999999999999999888763 3555555555555555554443 445
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh--CcchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 426 LMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL--GAGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 426 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
.+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||+
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 899999999999999999999888776666 6666666554 7887777766666666555 4445544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-08 Score=93.02 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=131.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
++-.+...|........|-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|+.+...+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 57777888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHHHH-HHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc
Q 010239 169 PMYIAETAPTPMRGQLISLKEF-FIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (514)
.++++...||+-|..+-++.+. ..++|-.+|.++||.+.+.+ +=|..|.+.++.+++.+++...
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865 47889999999999999998 8899999999988886555544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=78.18 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=123.2
Q ss_pred cccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhhhH--
Q 010239 71 TSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPDF-- 147 (514)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~-- 147 (514)
..+.+..+..+ ++.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..+|.++..++...
T Consensus 57 ~~nlv~ylt~~-------~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~ 129 (571)
T KOG1237|consen 57 VSNLVTYLTLE-------LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPA 129 (571)
T ss_pred hhHHHHHHHHH-------hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566667766 788888888888888888899999999999975 89999999999998886665553221
Q ss_pred -----------------------HHHHHHHHHHhhhhhhhhhHHHHHHhhcCC---CC---cchhHHhHHHHHHHHHHHH
Q 010239 148 -----------------------IIMVVGRFVFGIGIGLAMHAAPMYIAETAP---TP---MRGQLISLKEFFIVLGMVG 198 (514)
Q Consensus 148 -----------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~ 198 (514)
..++.+.-+..+|.|+.-+...++-+|-++ ++ .+...+.++....++|..+
T Consensus 130 l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~ 209 (571)
T KOG1237|consen 130 LLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALL 209 (571)
T ss_pred cCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHH
Confidence 356677778888999999999999999998 32 2236788999999999999
Q ss_pred HHHhhhhhcccccchhHHHHhhHHHHHHHHHHhh
Q 010239 199 GYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMW 232 (514)
Q Consensus 199 g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 232 (514)
+..+-.+.-++. +|.+.|.+..+..++..++++
T Consensus 210 a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 210 AQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHH
Confidence 998888887776 999999999888777555544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-06 Score=78.37 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=121.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIAD-ILGRRRELILAALLYLVGALVTAL---APDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~ 164 (514)
||++..+..-+......|..++....|++.. |.++|+.-.+|+....++..+..+ ..+.+.+..+-++.|++.|..
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence 8999999999999999999999999999988 677888888888887777666544 457889999999999999999
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccc---------ccchhHHHHhhHHHHHHHHHHh
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL---------VAGWRYMYGASTPLAVIMGMGM 231 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~~wr~~f~~~~~~~~~~~~~~ 231 (514)
.....+...+...+++.|..+|.+.....++..++..+++.+.|. ..+|-.+|.+.++..++.+.+.
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988762 1246667777776666644443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-06 Score=82.03 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeecccc
Q 010239 353 LGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVF 432 (514)
Q Consensus 353 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (514)
.++..++.++..|.++||+|||..+........+..+.+.+. . |+.+. ..-..+++.. ......+++++..
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~------~-~~~~~-~~~l~g~~~~-~~s~~~a~vadis 141 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ------G-YWFFL-LLGLSGGFSA-IFSVGFAYVADIS 141 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH------H-HHHhh-hcccccchhh-hhhhhhhheeecc
Confidence 377888999999999999999999988887777776666542 1 33333 2222223322 3345568999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCchh
Q 010239 433 PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQR 499 (514)
Q Consensus 433 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (514)
..+.|....|+.+.....+..++|.+.+.+....|+...+.+..+..++..+......||+..++++
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999998888888887655444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.1e-06 Score=73.75 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=103.2
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHH
Q 010239 334 ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYV 413 (514)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (514)
+++++|+ +..+.+.++....+..++...+.|.++||+|||+.-+...++..++++..- .++.+..+..-++.+
T Consensus 60 LY~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~------~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 60 LYESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH------SSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh------ccccHHHHHHHHHHH
Confidence 4467888 888999999999999999999999999999999999888888888887543 233333333333333
Q ss_pred HHhhcccccccceeecc----ccchhhhhhHHHHHHHH-HHHHHHHHHHhchHhHHhhCc--chhhHHHHHHHHHHHHHh
Q 010239 414 GCYQLSFGPIGWLMISE----VFPLRLRGRGLSVAVLV-NFGANALVTFAFSPLKDLLGA--GILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 414 ~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~ 486 (514)
......+...-.=++.| -+|++..+...+...+. +.+.+++...+...+.+..+. ..+|.....+.+++.+++
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 33332221111012233 35666666666666533 444455555555666666654 678888888888888877
Q ss_pred CCCCCCCCCC
Q 010239 487 FXXXXXXXXS 496 (514)
Q Consensus 487 ~~~~~~~~~~ 496 (514)
....+|..+.
T Consensus 213 ~~~W~ENyg~ 222 (354)
T PF05631_consen 213 LKTWPENYGD 222 (354)
T ss_pred HhcccccCCC
Confidence 7767776554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-06 Score=81.32 Aligned_cols=115 Identities=22% Similarity=0.194 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhhhhhHHHHH
Q 010239 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP--DFIIMVVGRFVFGIGIGLAMHAAPMY 171 (514)
Q Consensus 94 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~ 171 (514)
...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999988766555544444433332 23344555577788887777777778
Q ss_pred HhhcCC-------CCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 172 IAETAP-------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 172 i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
++|..+ +++.|..++.......+|..+++.+++.+++
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 3333555677778888899999888887765
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-06 Score=66.29 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHH
Q 010239 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPM 170 (514)
Q Consensus 91 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 170 (514)
+++..--.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 343343445666777788888889999999999999999999998665554 5678889999999999999999999999
Q ss_pred HHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 171 YIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 171 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
++.+..++++|++..+++......+.++|.++...+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887766654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.3e-07 Score=83.98 Aligned_cols=156 Identities=12% Similarity=-0.009 Sum_probs=109.2
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCC-chhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHh
Q 010239 338 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGR-RPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCY 416 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
.+. +.+..|+..+...++..++.++.|+...|.+. |+.++.+.+++.++.++....-..+.+..++.++.-++.+.+.
T Consensus 66 ~~A-~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 66 PTA-TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCC-CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 454 67789999999999999999999999999886 8888889999999988874443333334444444444333332
Q ss_pred hcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh------------h-CcchhhHHHHHHHHHHH
Q 010239 417 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL------------L-GAGILFYAFGVIAVLSL 483 (514)
Q Consensus 417 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------~-g~~~~~~~~~~~~~~~~ 483 (514)
+.....-.|+++..-.++|.++++..+....+|.++||.+...+... + -|..+-++.+++.++..
T Consensus 145 --~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 145 --GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred --ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 22334457888877778888999988887778877777665443321 0 14456777788888888
Q ss_pred HHhCCCCCCCCCC
Q 010239 484 AFIFXXXXXXXXS 496 (514)
Q Consensus 484 ~~~~~~~~~~~~~ 496 (514)
++..+..+|..+.
T Consensus 223 v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 223 VIILFFFKEVYRG 235 (488)
T ss_pred HHHHhheeecccC
Confidence 7777777665443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-07 Score=87.06 Aligned_cols=176 Identities=14% Similarity=0.045 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHH--------HHHH-HHHHHHHHHHHHHHHHhhhhh
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGL--------ITSG-SLYGALIGSILAFNIADILGR 123 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--------~~s~-~~~~~~i~~~~~g~l~dr~Gr 123 (514)
.++..+...|+.-......+..+..+.+. +++.+..... ...+ ...++..|-.+...+.|+.||
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~-------ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR 377 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSA-------IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR 377 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHh-------hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh
Confidence 33445555666555555555555555554 4443332222 1111 122333366677788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHH
Q 010239 124 RRELILAALLYLVGALVTALAPDF--------IIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195 (514)
Q Consensus 124 r~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 195 (514)
|++.+.|.+++++..+..+...|. ..+.+..++.-+|-+ .....+-+|.+|.+-|+..-|+..+..-+|
T Consensus 378 k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~G 454 (538)
T KOG0252|consen 378 KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAG 454 (538)
T ss_pred HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccch
Confidence 999999999999999999988761 223333344444433 334456789999999999999999999999
Q ss_pred HHHHHHhhhhhcc-----cccchhHHHHhhHHHHHHHHHHhhcccCchh
Q 010239 196 MVGGYGIGSLLVD-----LVAGWRYMYGASTPLAVIMGMGMWWLPASPR 239 (514)
Q Consensus 196 ~~~g~~~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~ 239 (514)
.++|...-.++.+ .. +-|+.|++.+.++++..+..+++||+..
T Consensus 455 Aivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 455 AIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence 9999999999888 55 8999999999999998888889998854
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-05 Score=73.28 Aligned_cols=112 Identities=13% Similarity=-0.026 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhCCc-hhhhhhHHHHHHHHHHHHHhhhcc-------CCcchHHHHHHHHHHHHh
Q 010239 345 DATRVSILLGLFKLIMTGLAVLVVERLGRR-PLLLGGVSGIVISLFLLGSYYLFL-------DDVPAVAVVALLLYVGCY 416 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 416 (514)
..-.......++..+|+.+..+. .+-++| +.+.+..++=.+...++.+....+ -.+.+..++...+++..-
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 44567777888888988866443 111222 122222222222222222211110 123333444433333332
Q ss_pred hcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 417 QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 458 (514)
Q Consensus 417 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 458 (514)
+. .....+.+..+..++++|-.+..+....-.+|-.+|+.+
T Consensus 387 Gy-~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 387 GY-LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred hH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234445677888888888888777777777776666644
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-05 Score=73.04 Aligned_cols=108 Identities=14% Similarity=0.239 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCC---cchhHHhHHHHHH
Q 010239 125 RELILAALLYLVGALVTALAP---D------FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTP---MRGQLISLKEFFI 192 (514)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 192 (514)
|++++|.+++.+|.++..++. + .+.++++.++.++|.|+.-|...++++|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999999855542 2 367899999999999999999999999999765 4677888999999
Q ss_pred HHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc
Q 010239 193 VLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (514)
Q Consensus 193 ~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 233 (514)
++|..++..+.+++-++. +|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999998887 9999999999888876665554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.003 Score=61.49 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=84.4
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh--h-----------------------
Q 010239 92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA--P----------------------- 145 (514)
Q Consensus 92 s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~----------------------- 145 (514)
++..+..+-....+ ...+...+..++++|++|.+++-+.+..+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55566666665555 445667889999999999998887776666666666552 0
Q ss_pred ------hHHHHHHHHHHHhhhhhhhhh-HHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 146 ------DFIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 146 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
+.|.+.+..++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344444444444444333 457788999999999999999999999999999988888876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-08 Score=98.08 Aligned_cols=145 Identities=15% Similarity=0.043 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhccccccc
Q 010239 345 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIG 424 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (514)
..+...+...++.++|+++.|+++||+|||+.+..+..+..++.++.+.... ..+.+...+.-++.+.+.+ +..+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~R~~~G~~~g-~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS--YNNFWMLLIGRFLIGFGIG-GAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc-cccccc
Confidence 4578889999999999999999999999999999999888888877664210 0134444444444444333 334566
Q ss_pred ceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh---hCcchhhHHHHHHHHHHHHHhCCCCCCC
Q 010239 425 WLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL---LGAGILFYAFGVIAVLSLAFIFXXXXXX 493 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
..++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+...++..++..+.. .+.||.
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES 194 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 68999999999999999999988877777666554333222 337766666665555444333 334543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.005 Score=58.40 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=88.4
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh---------------hh---------
Q 010239 92 SSVEIGLITSGSLY-GALIGSILAFNIADILGRRRELILAALLYLVGALVTALA---------------PD--------- 146 (514)
Q Consensus 92 s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------------~~--------- 146 (514)
++..+.++-+..-+ +..+..++.++++++..|.+++-+-+..+....+++++. .+
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56677888888888 778899999999999999999988877777777777762 10
Q ss_pred --------HHHHHHHHHHHhhhhhhhhh-HHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc
Q 010239 147 --------FIIMVVGRFVFGIGIGLAMH-AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD 208 (514)
Q Consensus 147 --------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 208 (514)
.|...+...+.=+-...... .-.....|.+..+|-.|..++++.+.+++..++..+..++.+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13333444443333333333 455677899998999999999999999999999999888876
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.1e-06 Score=57.60 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=54.4
Q ss_pred HhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
++.....+...|.++...++ .|+|+.++|.+.++..+...++++++|.++||+++++.++....+.
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 33334455667777777777 8999999999999999999999999999999999988877765543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=73.54 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhccCC-c--chHHHH
Q 010239 332 ASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLDD-V--PAVAVV 407 (514)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 407 (514)
.++....+. +...+..+........-+..+++|+++|+ +|+++.+..+.++..++..++.+....... . ....++
T Consensus 12 lYl~~~lg~-~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~ 90 (654)
T TIGR00926 12 LYFLNFLGF-SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLL 90 (654)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHH
Confidence 333445666 66666677777777777788889999996 699999998888888888776642111000 0 112223
Q ss_pred HHHHHHHHhhcccccccceeeccccchh---hhhhHHHHHHHHHHHHHHHHHHhchHhHHhh-------CcchhhHHHHH
Q 010239 408 ALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLVNFGANALVTFAFSPLKDLL-------GAGILFYAFGV 477 (514)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~ 477 (514)
.+.+..++. .+.-|...+...|.++++ .+-+.+.+.....++|+.+++.+.+.+.+.. +|...|.+.++
T Consensus 91 gLaLia~G~-GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i 169 (654)
T TIGR00926 91 GLALIALGT-GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI 169 (654)
T ss_pred HHHHHHhhc-cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence 333333333 333455557777777643 4677888888889999999999999887543 47777887777
Q ss_pred HHHHHHHHhCC
Q 010239 478 IAVLSLAFIFX 488 (514)
Q Consensus 478 ~~~~~~~~~~~ 488 (514)
+.+++.++...
T Consensus 170 ~m~ia~lvf~~ 180 (654)
T TIGR00926 170 LMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHH
Confidence 77776666543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-05 Score=52.41 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHH
Q 010239 317 LFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVS 382 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 382 (514)
++..++....+.-|.+.++++.|. +..+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 333444555677788889999999 99999999999999999999999999999999887765443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=62.78 Aligned_cols=145 Identities=14% Similarity=0.031 Sum_probs=77.7
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHH
Q 010239 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIAD-----ILGRRRELILA 130 (514)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~~~ 130 (514)
++.+-+++.|...+.....+|.+.++.. -++|.++.|... .....+. .-++|.++.| |+||||..++=
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhcccc-----CCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhH
Confidence 4456678888888876566777766511 156666666422 1111211 2456666666 89999876553
Q ss_pred H-HHHHHHHHHHHhhh----------------------h--HHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHH
Q 010239 131 A-LLYLVGALVTALAP----------------------D--FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLI 185 (514)
Q Consensus 131 ~-~~~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 185 (514)
. .+.++..+..+..- + ...+...-++.=+-++....+.-.+.-...++++++.+.
T Consensus 77 ~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~AS 156 (544)
T PF13000_consen 77 IQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYAS 156 (544)
T ss_pred HHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHH
Confidence 2 22222222222111 0 112222222333333444555556666667778888777
Q ss_pred hHHHHHHHHHHHHHHHhhhhhc
Q 010239 186 SLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 186 ~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
.-...+.+.|..++..+.-.+-
T Consensus 157 TcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 157 TCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHhHhhhhHHHHHHHHHhhC
Confidence 7767677777666665544443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=53.61 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCc
Q 010239 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPM 180 (514)
Q Consensus 146 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 180 (514)
.+...++.-.+.+++.|..........++. |++.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y 149 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY 149 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence 456677777888888887777777666554 5443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00052 Score=64.05 Aligned_cols=124 Identities=15% Similarity=0.024 Sum_probs=83.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhcc-CCcch--HHHHHHHHHHHHhhc
Q 010239 342 AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFL-DDVPA--VAVVALLLYVGCYQL 418 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 418 (514)
+...+-+...++.+..++..+.+-|+.||+|-|....++..+..++..+=.+..... ++..+ .....-.+.. ....
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa-~Aq~ 155 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA-AAQP 155 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH-Hhhh
Confidence 566778888999999999999999999999999999999888888877654322211 12222 1111111111 1111
Q ss_pred ccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh
Q 010239 419 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL 466 (514)
Q Consensus 419 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 466 (514)
.+..+..-...-.+|+++|+++..+..+.+.+|.+++..+-..+..+.
T Consensus 156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111122233445689999999999999999999999888777776543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=57.07 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=37.3
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHhhhhhcc----cccchhHHHHhhHHHHHHHHHHhhcc
Q 010239 179 PMRGQLISLKEFFIVLGMVGGYGIGSLLVD----LVAGWRYMYGASTPLAVIMGMGMWWL 234 (514)
Q Consensus 179 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~~~wr~~f~~~~~~~~~~~~~~~~~ 234 (514)
|+|+....+...+.++|.++....--.-.+ ...+|++.+.+.+++.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777788888888776554322211 11279999999998887755555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=61.35 Aligned_cols=112 Identities=20% Similarity=0.103 Sum_probs=82.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAA-----LLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 166 (514)
..++..+....|.+|..++.--...+ |+ |++.+.+. ++..+...+.-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35677777888887776664332211 33 33333322 22223333444568899999999999999999999
Q ss_pred HHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 167 AAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 167 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
.....+.|-.++++|-.+++....+-++|..++.+++-.+-
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887763
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0047 Score=59.85 Aligned_cols=120 Identities=8% Similarity=-0.034 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCc---------------------
Q 010239 344 SDATRVSILLGLFKLIM-TGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDV--------------------- 401 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 401 (514)
+...++.+...+...+. .++.+++++|++|+++...........+++++.......+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 44555555554444444 78889999999999988776666666666665543322111
Q ss_pred -----chHHHHHHHHHHHHhhccccc-ccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 402 -----PAVAVVALLLYVGCYQLSFGP-IGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 402 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
.|... .+.+..-.++....+ +.|.+++|.+..++..+-+++.....++|..+++.+...+.+
T Consensus 123 i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 222222222222223 668899999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0031 Score=50.95 Aligned_cols=111 Identities=13% Similarity=-0.082 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhccccccc
Q 010239 345 DATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIG 424 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (514)
....-..+......+..++.+.+.+++|.|+.++++.++..+-..... ..+.+..+....+.+.+.+..+. ..
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~------~~~~~~l~~~s~l~G~~~a~lW~-aq 110 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF------YPNSYTLYPASALLGFGAALLWT-AQ 110 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHhhhhHHhhH-hh
Confidence 344556666777788888899999999999999998887776554432 12345555555555555555554 33
Q ss_pred ceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHh
Q 010239 425 WLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPL 462 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 462 (514)
..++.+...++.+++-.++...+.+.+.++|..+.-.+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888889999999999999888877777655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0069 Score=60.08 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=83.6
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--HH-HHHHHH----HhhhhH-HHHHHHHHHHhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL--YL-VGALVT----ALAPDF-IIMVVGRFVFGIG 160 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~ 160 (514)
+|.+....+.+.+++.+|.++|+.+.+++.++.-++.. .+-+.+ .+ +...+. ++...+ ..++..-++.|+.
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999988744333322 111111 11 111111 111111 2233444667888
Q ss_pred hhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc-cccchhHHHHhhHHHHHH
Q 010239 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-LVAGWRYMYGASTPLAVI 226 (514)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~~wr~~f~~~~~~~~~ 226 (514)
.|+..|....+..+... ++-++..|-......+|.++|.++.+++.- .. |-....++.+.+.++
T Consensus 124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l-G~~~t~~~~a~l~~~ 188 (521)
T PRK03612 124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRL-GLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 88888887777765432 234677888889999999999999887664 44 443333344444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0045 Score=60.23 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=113.6
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHhh
Q 010239 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL----------APDFIIMVVGRFVFGI 159 (514)
Q Consensus 90 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 159 (514)
|.++...|.+..+..++..++..+.....-+..-|+++..+.++..+..+.... .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 489999999999999999999999998888888899998888877776664322 1222333344466777
Q ss_pred hhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhccccc-------chhHHHHhhHHHHHHHHHHhh
Q 010239 160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVA-------GWRYMYGASTPLAVIMGMGMW 232 (514)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-------~wr~~f~~~~~~~~~~~~~~~ 232 (514)
.....+.....+++|..|+..-|...++..+..++|..++..++..+.+..+ +-.+..++..+..++.+.+..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 7777888888899999999999999999999999999999999999876431 234455555666655555555
Q ss_pred cccCchh
Q 010239 233 WLPASPR 239 (514)
Q Consensus 233 ~~~e~~~ 239 (514)
++|++.+
T Consensus 411 lLp~~~~ 417 (433)
T PF03092_consen 411 LLPPQKR 417 (433)
T ss_pred HcCCCch
Confidence 6777544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.32 E-value=4.2e-05 Score=75.80 Aligned_cols=174 Identities=14% Similarity=0.040 Sum_probs=1.4
Q ss_pred HHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhh
Q 010239 317 LFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYL 396 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
.+.+..........++.+-+++++ +..+.|++.+..-++.++..++..++.+|..|-+.+-.+.++++++.+++++-..
T Consensus 12 ~~~q~~~~g~~~~~lttiErRF~l-~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf 90 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTIERRFGL-SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence 333333334444555666677888 8889999999999999999999999999887778888888888888887764211
Q ss_pred ccC-----------------------------------------Cc---chHHHHHHHHHHHHhhcccccccceeecccc
Q 010239 397 FLD-----------------------------------------DV---PAVAVVALLLYVGCYQLSFGPIGWLMISEVF 432 (514)
Q Consensus 397 ~~~-----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (514)
..+ .. .+..++..-++.+.......++..+|+-|.+
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 100 00 1112222223344444445677789999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh---------------------hC-cchhhHHHHHHHHHHHHHhCCCC
Q 010239 433 PLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL---------------------LG-AGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 433 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
+++..+...|+......+|-++|=.+.+...+. .| |...|++.+.+.++..+-.+.+.
T Consensus 171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 171 SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998888877776666655421 12 44456666666666555555444
Q ss_pred C
Q 010239 491 X 491 (514)
Q Consensus 491 ~ 491 (514)
|
T Consensus 251 k 251 (539)
T PF03137_consen 251 K 251 (539)
T ss_dssp -
T ss_pred c
Confidence 3
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0045 Score=62.31 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHH
Q 010239 308 ALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVIS 387 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 387 (514)
.++....+..+.+......+......+=+.+++ +..+.|++....-++..+...+..+...|..|-+.+-.+.++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i-~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKI-SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 344444555554444444444555555566777 7777999999999999999999999999999989999999999998
Q ss_pred HHHHHHhhhcc----------------C---------------------------C-c--chHHHHHHHHHHHHhhcccc
Q 010239 388 LFLLGSYYLFL----------------D---------------------------D-V--PAVAVVALLLYVGCYQLSFG 421 (514)
Q Consensus 388 ~~~~~~~~~~~----------------~---------------------------~-~--~~~~~~~~~~~~~~~~~~~~ 421 (514)
.+++++--... . . + .|..++..-++.+.+.....
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 88876421110 0 0 1 23333333444555555556
Q ss_pred cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHh------------------hC-cchhhHHHHHHHHHH
Q 010239 422 PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDL------------------LG-AGILFYAFGVIAVLS 482 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------~g-~~~~~~~~~~~~~~~ 482 (514)
++..+|+-|.+.++......|+..++..+|-++|=.+.+.+... .| |...|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 77789999999999999999999988888877777666665432 12 444677777777777
Q ss_pred HHHhCCCCCCCC
Q 010239 483 LAFIFXXXXXXX 494 (514)
Q Consensus 483 ~~~~~~~~~~~~ 494 (514)
.+..+++.++..
T Consensus 336 a~p~f~fPk~lp 347 (735)
T KOG3626|consen 336 AVPLFFFPKELP 347 (735)
T ss_pred HHHHHhCcccCc
Confidence 777666554433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=41.78 Aligned_cols=67 Identities=19% Similarity=0.059 Sum_probs=58.4
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGS 393 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 393 (514)
.+.-.+|.+.++.++ +..+++++.+...++.++|.+...++.++.++++.+..+.+...+....+++
T Consensus 10 ayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 10 AYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445577888888888 9999999999999999999999999999888888888888888888887775
|
Note that many members are hypothetical proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.068 Score=50.55 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=84.6
Q ss_pred HHHHhHHHHHHH-cCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 326 SVLYYAASILQS-AGFSAASDA-TRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 326 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.-.+..|++.+. .++ +..+. .-+.-...=+.++.-+....+.|.++.|++++.+.+...+...++.+ .++.+
T Consensus 22 sEPfl~~yL~~~~kn~-T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~-----~~sv~ 95 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNF-TEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF-----GTSVL 95 (412)
T ss_pred CCccchHHHcCCccCC-CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----HCcHH
Confidence 334455555554 555 44433 34444445556666777788999999999999988887777666544 23333
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 467 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 467 (514)
...+.-++.+... .. -...++++=..+|+++--++.+.......+|..++..++-.+....+
T Consensus 96 ~mq~~q~~yg~~~-a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~ 157 (412)
T PF01770_consen 96 AMQLMQFFYGLAT-AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG 157 (412)
T ss_pred HHHHHHHHHHHHH-HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333222 22 22334666667788888889999999888888888887776666433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.043 Score=50.54 Aligned_cols=148 Identities=20% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHhHHHHHHHcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchH
Q 010239 327 VLYYAASILQSAGFSAA--SDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAV 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
.....+.+..+.+. +. ...+.......+...++.++.|.+.||.|||+.+..+......+.++.... . ....+.
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 96 (338)
T COG0477 21 LSPALPLLLSTLSL-SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--P-NVGLAL 96 (338)
T ss_pred HHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--c-cchHHH
Confidence 33445555555554 33 367888888889999999999999999999977776665433332332221 0 111222
Q ss_pred HHHHHHHHHHHhhcccccccceeeccccch-hhhhhHHHHHHH-HHHHHHHHHHHhchHhHHh--hCcchhhHHHHHHH
Q 010239 405 AVVALLLYVGCYQLSFGPIGWLMISEVFPL-RLRGRGLSVAVL-VNFGANALVTFAFSPLKDL--LGAGILFYAFGVIA 479 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~ 479 (514)
....... .+.......+....+..|..|+ +.++...+.... ...++..+++.+.+.+... .+|+..+.......
T Consensus 97 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 97 LLILRLL-QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2222222 2223323445666888999886 578888888888 5777878888666666654 35555444443333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=56.19 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=92.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh------hh----hHHHHHHHHHHHh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTAL------AP----DFIIMVVGRFVFG 158 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~----~~~~l~~~r~l~G 158 (514)
-|+++..+|..-+...+....+.+...++.+|+|..|.=++++....+...++.. .+ +...++.+-++.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999988877776655444433332 12 3344444545555
Q ss_pred hhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
+|.=....+..-++.|..|+++||...|.-.+..++--++...++-.+.
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5555677888889999999999999999999999988888777766553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=49.99 Aligned_cols=104 Identities=21% Similarity=0.337 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHhhh
Q 010239 102 GSLYGALIGSILAFNIAD---ILGRRRELILAALLYLVGALVTALA------------------PDFIIMVVGRFVFGIG 160 (514)
Q Consensus 102 ~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~ 160 (514)
...+|..++..+.+.+++ |+||++.+.++..+..++.++.-+. +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 333444555566667765 5789999999999998888887663 2456777888999999
Q ss_pred hhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 161 IGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
-+......+.++.+.. +++|..+.++...-..++..++.......
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999 47788888888887777777665554443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0005 Score=63.51 Aligned_cols=109 Identities=13% Similarity=-0.082 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh-CCchhhhhhHHHHHHHHHHHHHhhhcc--------CCcchHHHHHHHHHHHHhhc
Q 010239 348 RVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLFL--------DDVPAVAVVALLLYVGCYQL 418 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 418 (514)
.....+.++..+|+.+.++..-+. .+|++.. ..+.-.+...++......+ -.+.+..++...+++ ...+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g-~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFG-FTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHH-Hccc
Confidence 456678999999999888743221 2343332 2222222222222211110 112233333333333 2232
Q ss_pred ccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHh
Q 010239 419 SFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFA 458 (514)
Q Consensus 419 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 458 (514)
-..+..+.+..+..++++|..+-.+....-.+|-.+|..+
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556778888888888777777766666665555543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0077 Score=53.29 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 010239 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET 175 (514)
Q Consensus 96 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 175 (514)
.|.+.-+-.+...+-.+.+....||+---+=..+..++.+.+.++.+++++.++=+++-.+..++.|.-...-.++-+.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 34444455556666667777788886543334556677888888999999999999999999888887766655544332
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcc-cccchhHHHHhhHHHHHHHHHHhhcccCch
Q 010239 176 APTPMRGQLISLKEFFIVLGMVGGYGIGSLLVD-LVAGWRYMYGASTPLAVIMGMGMWWLPASP 238 (514)
Q Consensus 176 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~ 238 (514)
+ ....+-+..+.+.+.++|..--..+.+ ...+-|...++...+-++.+...+++-++|
T Consensus 144 -~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 -P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred -C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 2 233444455555555555544444444 112567788887777766655555543333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0096 Score=51.66 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=86.4
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHH
Q 010239 334 ILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYV 413 (514)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (514)
+.+.+++ ...+.+.++.......++...+.|-+.||.|||+.-+..++...++++.=- .+.....++.-.+.+
T Consensus 63 LYstYgF-gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKh------SpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 63 LYSTYGF-GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH------SPQYKVLMVGRVLGG 135 (454)
T ss_pred eehhcCc-cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhc------CCceEEEeehhhhhh
Confidence 3466676 667778887777777888888899999999999987666666666555310 111222222222222
Q ss_pred HHhhcccccccceeecccc-----chhhhhhHHHHHH-HHHHHHHHHHHHhchHhHHhhC--cchhhHHHHHHHHHHHHH
Q 010239 414 GCYQLSFGPIGWLMISEVF-----PLRLRGRGLSVAV-LVNFGANALVTFAFSPLKDLLG--AGILFYAFGVIAVLSLAF 485 (514)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~-----p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 485 (514)
......+...-.=++.|.. |.+......+=.. ..+.+-+++.......+.|.++ ...+|-..+.+..++..+
T Consensus 136 iaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAv 215 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAV 215 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 2222222111112344543 3333333333333 2234445555555556666654 556777766666666666
Q ss_pred hCCCCCCCCCCch
Q 010239 486 IFXXXXXXXXSFQ 498 (514)
Q Consensus 486 ~~~~~~~~~~~~~ 498 (514)
.+--+.|..+++.
T Consensus 216 il~~W~ENygdps 228 (454)
T KOG4332|consen 216 ILSSWSENYGDPS 228 (454)
T ss_pred HHhhhhhccCChh
Confidence 6555555555543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.041 Score=52.57 Aligned_cols=116 Identities=10% Similarity=-0.073 Sum_probs=76.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCC----cchHHHHHHHHHHHHhhcccccccceeeccccchh---hhhhHHHHHHHH
Q 010239 375 PLLLGGVSGIVISLFLLGSYYLFLDD----VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR---LRGRGLSVAVLV 447 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 447 (514)
+.+..+.++..++.+++.+....... ......+.+.++. ...++.-|....+..|.++++ .+.+.+......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia-~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIA-VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHH-HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHH-hccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 45667777777777775443322111 1133333344333 333344455567788887754 466777788888
Q ss_pred HHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 448 NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 448 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.++|+.++..+.+++.++.||...|.+.++..+++.+..+.-.+
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999988888887776655433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.4 Score=40.09 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCC--Ccc
Q 010239 104 LYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPT--PMR 181 (514)
Q Consensus 104 ~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r 181 (514)
.+..+..+++.+.+..++|-|.+++++...+...-.. -+-+.+..++-.-.+.|++.+..+..--+++++.-.. +.|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 4455566667779999999999999988877654332 2346788999999999999998887766666655432 222
Q ss_pred -------------hhHHhHHHHHHHHHHHHHHHhhh
Q 010239 182 -------------GQLISLKEFFIVLGMVGGYGIGS 204 (514)
Q Consensus 182 -------------~~~~~~~~~~~~~G~~~g~~~~~ 204 (514)
|....++++..-+|..+..++-.
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~ 182 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT 182 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566555554433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=51.27 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhchHhHH-hhCcchhhHHHHHHHHHHH
Q 010239 437 RGRGLSVAVLVNFGANALVTFAFSPLKD-LLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 437 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~ 483 (514)
.+...|-......+|+++|+.+.+.+.- ..|.....++.+.+.++..
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5677888888899999999999888654 5775555555554444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.25 Score=48.46 Aligned_cols=108 Identities=12% Similarity=-0.000 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccC-----C---------------------cchHHHHHH
Q 010239 356 FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-----D---------------------VPAVAVVAL 409 (514)
Q Consensus 356 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------------------~~~~~~~~~ 409 (514)
+.++...+-.++++++++.++.-+..........++++..+... + ..|... ..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s-lf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFS-LF 149 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH-HH
Confidence 34555667788999999998877666666666666655433211 0 111111 11
Q ss_pred HHHHHHh-hcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 410 LLYVGCY-QLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 410 ~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
.+..-.+ .....-+.|.++.|.++.++..+-+++.....++|.++++.+...+.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112 222222457899999999999999999999999999999988888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.52 Score=45.82 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHH--HHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhhhhhh
Q 010239 97 GLITSGSLYGALIGSILAFNIADILGRR--RELIL--AALLYLVGALVTALA---------PDFIIMVVGRFVFGIGIGL 163 (514)
Q Consensus 97 g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~--~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~ 163 (514)
-+....|.+|-.+|..+..+.. .-++| .+++. .=+++.-..++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556666677777766443321 11222 33222 222333333444322 4557777889999999999
Q ss_pred hhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
....+..+..+..++++|-.+-.+...+..+|..+|..++-.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.8 Score=43.70 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=97.3
Q ss_pred hHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhccC---------
Q 010239 330 YAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFLD--------- 399 (514)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------- 399 (514)
...++....+. +...+.-.............+++++++|- .||.+.+.++.++..++..++.+......
T Consensus 60 lv~ylt~~~~~-~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 60 LVTYLTLELHA-SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 33444455555 33556666666666677778899999996 47888888888777777655543322110
Q ss_pred -C-------cc-hH-HHHHHHHHHHHhhcccccccceeeccccc----hhhh--hhHHHHHHHHHHHHHHHHHHhchHhH
Q 010239 400 -D-------VP-AV-AVVALLLYVGCYQLSFGPIGWLMISEVFP----LRLR--GRGLSVAVLVNFGANALVTFAFSPLK 463 (514)
Q Consensus 400 -~-------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l~ 463 (514)
. .. .. .+............+.-|....+-+|-++ .+.+ ..-+.......++|..+...+..++.
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 01 11111112222333444555567777776 2222 35666777778888888888888888
Q ss_pred HhhCcchhhHHHHHHHHHHHHHhCC
Q 010239 464 DLLGAGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 464 ~~~g~~~~~~~~~~~~~~~~~~~~~ 488 (514)
+..+|...|.+..++.+++.++.+.
T Consensus 219 ~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hcccceeeccHHHHHHHHHHHHHHc
Confidence 8899998888887777776655543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.077 Score=48.60 Aligned_cols=123 Identities=14% Similarity=0.016 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH------hh------hhHHHHHHHHHHHhhhhhhh--hhHH
Q 010239 103 SLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTA------LA------PDFIIMVVGRFVFGIGIGLA--MHAA 168 (514)
Q Consensus 103 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------~~------~~~~~l~~~r~l~G~~~~~~--~~~~ 168 (514)
-.....+..++.|...|+..|+|++...+++.-++.+.++ +. .++..+..+-++.-...+.. ...+
T Consensus 72 esgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A 151 (503)
T KOG2601|consen 72 ESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLA 151 (503)
T ss_pred HHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566777888999999999999887765544433333 22 24444444444332222211 1111
Q ss_pred HH--HHhhcC----CCCcchhH---HhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHH
Q 010239 169 PM--YIAETA----PTPMRGQL---ISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVI 226 (514)
Q Consensus 169 ~~--~i~~~~----~~~~r~~~---~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 226 (514)
.+ +-.||. ..+.+... .+.....-..-..+.|.+.|.+.... +-|..-.+.++-.++
T Consensus 152 ~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 152 GTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV 217 (503)
T ss_pred heEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence 11 123332 22333333 35555566667889999999998876 777755555555544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.1 Score=49.45 Aligned_cols=132 Identities=16% Similarity=-0.031 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 010239 96 IGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAET 175 (514)
Q Consensus 96 ~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 175 (514)
-.|-..++.+...+.+...-++++|+|-|+.+..+...+.++..+.++.++.+....-|-..|+-.+....+....++++
T Consensus 334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y 413 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY 413 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence 34556677788889999999999999988888888887899999999999999999999888866665555545444433
Q ss_pred CC-----------------------CCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHH
Q 010239 176 AP-----------------------TPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIM 227 (514)
Q Consensus 176 ~~-----------------------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 227 (514)
.- ..-+|...|+.++...+.+++..+..|.+.+..++=+.+-++.+++++..
T Consensus 414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~ 488 (498)
T KOG0637|consen 414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLI 488 (498)
T ss_pred HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHH
Confidence 21 12346778888888888888888888888887766677666666666553
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.038 Score=51.13 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHH--HHHHHHHHHHHH----------hhhhHHHHHHHHHHHhhhhhhh
Q 010239 98 LITSGSLYGALIGSILAFNIADI-LGRRRELILA--ALLYLVGALVTA----------LAPDFIIMVVGRFVFGIGIGLA 164 (514)
Q Consensus 98 ~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~--~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 164 (514)
.+...|.++-.+|..+.++.-=+ -.+|++.+.+ =+++.-..++|. +.+|-+..++..++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877653211 1344444331 122222222331 2345577788899999999999
Q ss_pred hhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 165 MHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 165 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
...+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~ 307 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL 307 (309)
T ss_dssp -HHHH-------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888888888888887766543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.60 E-value=5.1 Score=38.85 Aligned_cols=123 Identities=12% Similarity=-0.079 Sum_probs=79.8
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccC-------------------C-
Q 010239 342 AASDATRVSILLGL-FKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLD-------------------D- 400 (514)
Q Consensus 342 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~- 400 (514)
.++...++-...-+ ++++..++-+++.+++.+.++.-.........+++++...+... +
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34444555444444 56677778888888888888887777777777777765544210 0
Q ss_pred -------cchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH
Q 010239 401 -------VPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD 464 (514)
Q Consensus 401 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 464 (514)
+.|.......+.-.......+-+.+..+.|....++..+-+++.+...+++..+++.+..++..
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0122222222222222222223556788999999999999999999999999998888888765
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=5.7 Score=37.68 Aligned_cols=49 Identities=8% Similarity=-0.191 Sum_probs=24.0
Q ss_pred HhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 320 QITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
....++.+..-.+++.+.....+. +-.+.....+.+.+..++...+--+
T Consensus 30 ~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 30 TLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred cccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777666554222 4444444444444444444443333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.96 E-value=6.7 Score=36.79 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=64.0
Q ss_pred HHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHH---HHHHHHHHHHHHHHHHHHHHhHhCCchhhhh-hHHHHHHHHHH
Q 010239 315 LVLFQQITGQPSVLYYAASILQSAGFSAASDATR---VSILLGLFKLIMTGLAVLVVERLGRRPLLLG-GVSGIVISLFL 390 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~-~~~~~~~~~~~ 390 (514)
+.+..+...++... -.|.+++..+. |-.+.+. ..-+..+=-+-+.++-....+|+||||..++ +..+.+..+.+
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~v-Syt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGV-SYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCc-chhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 33444444554444 77888886555 4433333 3333333333333333344449999887655 33344444444
Q ss_pred HHHhhhc----cCCcchHHHHHHHHHHHHhhcccc-cccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhch
Q 010239 391 LGSYYLF----LDDVPAVAVVALLLYVGCYQLSFG-PIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFS 460 (514)
Q Consensus 391 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 460 (514)
++..... ....+........++..-+..+.. ...-.+...+..++..|-+..........|.+++..++=
T Consensus 116 Ls~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 116 LSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 4321110 001111111111111111111111 111234445556677777766666666666666655543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.2 Score=41.41 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=32.6
Q ss_pred HhHHHHHHH--cCCCCCchhH---HHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhH-HHHHHHHHHH
Q 010239 329 YYAASILQS--AGFSAASDAT---RVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGV-SGIVISLFLL 391 (514)
Q Consensus 329 ~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~-~~~~~~~~~~ 391 (514)
--.|.++++ .+. +-.+.+ +..-++.+=-+-+.++-...++|+||||..++-. .++++.++.+
T Consensus 21 gsiPflL~~~~~~~-sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l 88 (544)
T PF13000_consen 21 GSIPFLLQSMAKKV-SYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYL 88 (544)
T ss_pred ccchhhhccccCCC-ChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHH
Confidence 355777766 333 333333 2333444444455555566677899998776543 3333333333
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.9 Score=37.79 Aligned_cols=113 Identities=12% Similarity=-0.023 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 010239 94 VEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYI 172 (514)
Q Consensus 94 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 172 (514)
.|.-|....|.+|..+..--.-..--++ ---.++..-.+++.+...+..+.++++..++.-+.-|+-.|..++...--+
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i 367 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI 367 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 3567888888877654322111111110 011223334556666677778889999999999999998888888888888
Q ss_pred hhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhh
Q 010239 173 AETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLL 206 (514)
Q Consensus 173 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 206 (514)
.+-.++++|-.+|+....+-++|..++..++-.+
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888889999999999999999999888877665
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.10 E-value=15 Score=34.03 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=72.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----HHH-Hh----hhhHHHHHHHHHHHhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA----LVT-AL----APDFIIMVVGRFVFGI 159 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~----~~~-~~----~~~~~~l~~~r~l~G~ 159 (514)
.|-+--+.+.+.+.|.....+|+...-++.|.--.-+.+..-+++..++. ++. .| .++-+.+.++-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 35566788999999999999999999888775433333322222222221 111 22 3466888899999999
Q ss_pred hhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc
Q 010239 160 GIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207 (514)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 207 (514)
-.|...|....++..... +-....+.....-.+|...+.++-.++.
T Consensus 118 LVG~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~ll 163 (508)
T COG4262 118 LVGAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFLL 163 (508)
T ss_pred HHhcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHHH
Confidence 999999999998877321 1111222222235566666655554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=85.77 E-value=13 Score=32.86 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH----HHHHHHHHHHHHHHh-h----hhHHHHHHHHHHHhhhhhhhhh
Q 010239 97 GLITSGSLYGALIGSILAFNIADI-LGRRRELI----LAALLYLVGALVTAL-A----PDFIIMVVGRFVFGIGIGLAMH 166 (514)
Q Consensus 97 g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~ 166 (514)
....-++..|..+|....|++... +-||+.+. .+.++..+..+.... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445566677777888888888774 45555444 334444444444212 1 1356677788888876655555
Q ss_pred HHHHHHhhcC--CCCcchhHHhHHHHHHHHHHH
Q 010239 167 AAPMYIAETA--PTPMRGQLISLKEFFIVLGMV 197 (514)
Q Consensus 167 ~~~~~i~~~~--~~~~r~~~~~~~~~~~~~G~~ 197 (514)
+...+=-|.= .|++-|...|+ .+++|.+
T Consensus 224 ViL~lPhEyK~~~pk~ig~~Fg~---iWGfGY~ 253 (267)
T PF07672_consen 224 VILNLPHEYKGYNPKKIGIQFGL---IWGFGYI 253 (267)
T ss_pred HHhcChhhhcCCCcceehhHHHH---HHHHHHH
Confidence 5544433432 33444444444 4444444
|
|
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.16 E-value=17 Score=32.17 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=13.5
Q ss_pred chhHHHHhhHHHHHHHHHHhhcccC
Q 010239 212 GWRYMYGASTPLAVIMGMGMWWLPA 236 (514)
Q Consensus 212 ~wr~~f~~~~~~~~~~~~~~~~~~e 236 (514)
...+.-++..++.++...++.+++.
T Consensus 113 ~~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 113 SSPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred chhHHHHHHHHHHHHHHHheeeecC
Confidence 4455555666666565555555543
|
The region concerned is approximately 280 residues long. |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=2 Score=31.35 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC
Q 010239 434 LRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG 467 (514)
Q Consensus 434 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 467 (514)
++.++.+.++-...-.+++.+.....|++.|++-
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888888999999999999999864
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=82.80 E-value=30 Score=29.76 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=24.3
Q ss_pred hcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHH
Q 010239 174 ETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPL 223 (514)
Q Consensus 174 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~ 223 (514)
|+.-++++.+.-.......-++..+|..+++.+.+.. +. +..++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~-~~-~al~~~~~~ 200 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRL-GF-WALLLPALL 200 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-HHHHHHHHH
Confidence 4333344333444445555566666766777666655 54 333333333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 514 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-23 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 44/283 (15%), Positives = 82/283 (28%), Gaps = 79/283 (27%)
Query: 180 MRGQLISLK-EFFIVL-GMVGGYGIG-SLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-- 234
+R L+ L+ +++ G++G G + + V S + M ++WL
Sbjct: 140 LRQALLELRPAKNVLIDGVLG---SGKTWVALDVC-------LSYKVQCKMDFKIFWLNL 189
Query: 235 --PASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGED 292
SP +L M +Q L + + I EL + +
Sbjct: 190 KNCNSPETVL--EM-----LQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKS 240
Query: 293 KE-----VSLREVFHGKCLKALIIGAGLVL---FQQITGQPSVLYYAASIL--QSAGFSA 342
K + L V + K A + ++L F+Q+T S L S +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 343 ASDATRVSILLGLF-KLIMTGLAVLVVERLGRRPLLLGGVS------------------- 382
+ L K + L E L P L ++
Sbjct: 301 DE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 383 --GIVISLFL-------LGSYY----LFLDDV--PAVAVVALL 410
+I L + +F P +++L+
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLI 395
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 61/475 (12%), Positives = 137/475 (28%), Gaps = 74/475 (15%)
Query: 39 RPSPENYSVSAAILPFLFP-----ALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSS 93
+P+P + AA + + G+ +GY ++ P L S
Sbjct: 5 KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSR 61
Query: 94 VEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPD----FII 149
++G SG + +++D R L +L L P +
Sbjct: 62 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121
Query: 150 MVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDL 209
M V F+ G G+ + RG ++S+ +G + L +
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181
Query: 210 VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQ 269
W A+++ + + + +R++ Q
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAM--------------------MRDTP---------Q 212
Query: 270 SIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKA-LIIGAGLVLFQQITGQPSVL 328
S G E + ++E++ +++F L L+ +
Sbjct: 213 SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV---------F 263
Query: 329 YYAASIL----------QSAGFSAASDATRVSI--LLGLFKLIMTGLAVLVVERLGRRPL 376
Y + F+ + + G+ ++ G V R R
Sbjct: 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323
Query: 377 LLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL 436
+ ++ + I+ + Y++ P V ++ +++ +G + L E+ P +
Sbjct: 324 GVFFMTLVTIATIV---YWMNPAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKA 379
Query: 437 RGRGLSVAVLVNFGANA----LVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
G + A + D G F ++L++ +
Sbjct: 380 AG---TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAP 145
+ L++ + GLI S +G I I A + L + +I LY +GA + A
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115
Query: 146 DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205
++ + +VG F+ G+G AA ++ P ++L + F G + G
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175
Query: 206 LV 207
L+
Sbjct: 176 LI 177
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 117 IADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETA 176
I+D +GRR +++ ++++ LV +++ + G+G G+ A +
Sbjct: 58 ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY 117
Query: 177 PTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234
SL I++ + IG LL + WR Y L + M
Sbjct: 118 ERTQLRHANSLLNMGILVSPLLAPLIGGLLD-TMWNWRACYLFLLVLCAGVTFSMARW 174
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 47/406 (11%), Positives = 114/406 (28%), Gaps = 57/406 (14%)
Query: 91 LSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIM 150
+S + G+I + +L+ L ++D LG R+ L+ LV + ++
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 151 VVGRFVFGIGIGL---AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV 207
V I G+ A E + + + G V G+ +G+ +V
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV-GWALGASIV 158
Query: 208 DLVAGW--RYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCR 265
++ ++++ + A+I+ + +++ A + L R
Sbjct: 159 GIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFR 218
Query: 266 LRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQP 325
K + G+ + Q
Sbjct: 219 QP------------------------------------KLWFLSLYVIGVSCTYDVFDQQ 242
Query: 326 SVLYYAASILQSAGFSAASDATRVSILLGL---FKLIMTGLAVLVVERLGRRPLLLGGVS 382
++ S + + + + A L++ R+G + LL +
Sbjct: 243 FANFF-TSFFATGEQGTRV----FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297
Query: 383 GIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLS 442
+ + + V+ L++ + I+ F +R
Sbjct: 298 IMSVRIIGSS-----FATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYL 351
Query: 443 VAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
V A ++ + + +G + G++A+
Sbjct: 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.45 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.43 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.42 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.26 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=374.16 Aligned_cols=448 Identities=30% Similarity=0.543 Sum_probs=349.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCc-cccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010239 44 NYSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGIS-WYDLSSVEIGLITSGSLYGALIGSILAFNIADILG 122 (514)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 122 (514)
+++.+..+.+.++.+++.+++|||.++++..+|.+.++...+++ ..+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777778899999999999999999988766221110 01345667899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhH
Q 010239 123 RRRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQL 184 (514)
Q Consensus 123 rr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 184 (514)
||++++++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhccc-------ccchhHHHHhhHHHHHHHHHHhhcccCchhHHHHhhccccCCccccHH
Q 010239 185 ISLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRE 257 (514)
Q Consensus 185 ~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 257 (514)
.++.+.+..+|.++++.++..+... ...||+.+.+..++.++..+..+++||+|+|+..++ +.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chh
Confidence 9999999999999999988776542 126999999999999998888999999999999887 666
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH
Q 010239 258 SAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS 337 (514)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
++++.+++.+..+..++. ..+..... ..+++....... ...++..+......+.++.+.+.+.+|.+.+.+.
T Consensus 235 ~a~~~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQA---VQEIKHSL--DHGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHHH---HHHHHHHH--HhhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 676666665432211100 00000000 000011111111 2234455666666777788888889999999888
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhh
Q 010239 338 AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQ 417 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (514)
.+. +............+..+++.++++++.||+|||+.+..+.....++++.++..... ....+..+....++..++.
T Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 307 LGA-STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred cCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHH
Confidence 887 66677777888899999999999999999999999999888888887776654433 3334445555556666777
Q ss_pred cccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHH------hhCcchhhHHHHHHHHHHHHHhCCCCC
Q 010239 418 LSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKD------LLGAGILFYAFGVIAVLSLAFIFXXXX 491 (514)
Q Consensus 418 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.++.++.+.+.+|.+|++.|++++|+.+..+++++++++.+.+.+.+ ..+....|++++++++++.++.+++.|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 77778888999999999999999999999999999999988876643 345667888999999999998888899
Q ss_pred CCCCCchhhhhcccccCCC
Q 010239 492 XXXXSFQRQRGLRLRRSRP 510 (514)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~ 510 (514)
|||+|..+|.++..+++++
T Consensus 465 ETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETK 483 (491)
T ss_dssp CCTTCCHHHHGGGTC----
T ss_pred CCCCCCHHHHHHHhCCCCc
Confidence 9999999988776655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=329.43 Aligned_cols=399 Identities=14% Similarity=0.060 Sum_probs=301.1
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 010239 48 SAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRREL 127 (514)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 127 (514)
+..+..+....++.+..+++...+.+.+|.+.++ + .+..+.|++.+++.++..++++++|+++||+|||+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 3445556677778888888999999999999998 9 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 010239 128 ILAALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIG 203 (514)
Q Consensus 128 ~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 203 (514)
+++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccc-hhHHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHH
Q 010239 204 SLLVDLVAG-WRYMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDE 281 (514)
Q Consensus 204 ~~l~~~~~~-wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (514)
+.+.+.. + ||+.|++.++++++..+ ..+++||+|+....++ +.+..+..++ +.
T Consensus 176 ~~l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------------~~-- 230 (451)
T 1pw4_A 176 LLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYPD-------------------DY-- 230 (451)
T ss_dssp HHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---CTTTCCC--------------------------
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---hhhhcccccc-------------------cc--
Confidence 9988776 7 99999999988877544 4456788776321110 0000000000 00
Q ss_pred HHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHH
Q 010239 282 ILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIM 360 (514)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
..+.+++...++...++.++++..+...+..++.. ........+.|.++++ .+. +..+.+.......++.+++
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 231 -NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 00000001111111345566555544443333322 2334566788888877 566 7888999999999999999
Q ss_pred HHHHHHHHhHh--CCchhhhhhHHHHH-HHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhh
Q 010239 361 TGLAVLVVERL--GRRPLLLGGVSGIV-ISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLR 437 (514)
Q Consensus 361 ~~~~g~l~d~~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 437 (514)
.++.+++.||+ ++|+.+..+..+.. ++.+++.. ....+.+.......+.+. ......+....+..|.+|++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hcccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhh
Confidence 99999999999 99988877666555 44443321 111233333333333333 3333344556789999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCC
Q 010239 438 GRGLSVAVLVNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXX 489 (514)
Q Consensus 438 ~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 489 (514)
++++|+.+...++ |..++|.+.|.+.+..|+...|++.+++.+++.++.+..
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999989988888887777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=312.77 Aligned_cols=372 Identities=16% Similarity=0.133 Sum_probs=291.1
Q ss_pred HHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010239 53 PFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAAL 132 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 132 (514)
.+.++++..+..+++....++.+|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||++++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 33455566677788888899999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhc-c
Q 010239 133 LYLVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-D 208 (514)
Q Consensus 133 ~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~ 208 (514)
+.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 889999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred cccc------------------------hhHHHHhhHHHHHHHHHHhhc--ccCchhHHHHhhccccCCccccHHHHHHH
Q 010239 209 LVAG------------------------WRYMYGASTPLAVIMGMGMWW--LPASPRWLLLCAMKRKGDMQDLRESAISC 262 (514)
Q Consensus 209 ~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (514)
.... ||+.|++.+++.++..+..++ .||+++.. +.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~------------ 240 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN-------HS------------ 240 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC-------CC------------
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-------cc------------
Confidence 5423 999998888777765444443 45443200 00
Q ss_pred HHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHH-HHHc-CC
Q 010239 263 LCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSA-GF 340 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 340 (514)
++++++.+.+++++++++..+...+...+.... ......+.|.+ +++. |.
T Consensus 241 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 241 ------------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp ------------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCc
Confidence 000112233566777777666655544443332 23555677777 7776 66
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhccc
Q 010239 341 SAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSF 420 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (514)
+..+++.......++.+++.++.+++.||++||+.+..+..+..++.+++.. .+..+ ......+.+.+. ...
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~~~-~~~ 364 (438)
T 3o7q_A 293 -TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-----AGGHV-GLIALTLCSAFM-SIQ 364 (438)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CCHHH-HHHHHHHHHHHH-TTH
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-----cCCcH-HHHHHHHHHHHH-HHH
Confidence 8889999999999999999999999999999999998888877777665543 22222 233333333333 334
Q ss_pred ccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhC-cchhhHHHHHHHHHHHHHhCC
Q 010239 421 GPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLG-AGILFYAFGVIAVLSLAFIFX 488 (514)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 488 (514)
.+..+.+..|.+|++ ++++.++.. ...+++.++|.+.|.+.|..| +...|++.+++.++..++.+.
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 466678888999966 888888877 677999999999999999999 888888776666555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=282.69 Aligned_cols=396 Identities=14% Similarity=0.047 Sum_probs=257.2
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 167 (514)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 79999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCc--chhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcc-cCchhHHHHh
Q 010239 168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLC 244 (514)
Q Consensus 168 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~ 244 (514)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. ++..+ .
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~- 203 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLD---P- 203 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCC---S-
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccccc---c-
Confidence 9999999999988 777888899999999999999999999877 99999999887776654444432 22111 0
Q ss_pred hccccCCccccHHHHHHHHHH---------------HhCCCCCCCCchhHHHHHHh------hhhccccccchhHHHhhh
Q 010239 245 AMKRKGDMQDLRESAISCLCR---------------LRGQSIGDSAPTEVDEILTE------LSYVGEDKEVSLREVFHG 303 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 303 (514)
+.++.+...+.++.++..+. ......+.+........... .....+++.....+..+.
T Consensus 204 -~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 204 -HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp -CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred -cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 00111111122222222221 11111111111000000000 000000000000111111
Q ss_pred chhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhh-----
Q 010239 304 KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLL----- 378 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~----- 378 (514)
.......+...+.+.. +.....+.+.+.++....+....+.......+..+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAI----EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp TTHHHHHHHHHHHHHH----HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 1112222222222222 2233445566665533325467778888889999999999999999999986654
Q ss_pred hhHHHHHHHHHHHHHhhhc---cC-CcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHH
Q 010239 379 GGVSGIVISLFLLGSYYLF---LD-DVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANAL 454 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 454 (514)
.+..+.+++++++...... .. .+.+....... +.+.......+..+.++.|.+|++.|++++|+.+...++|..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA-LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH-HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544432111 01 12333333333 3333333445666789999999999999999999999999999
Q ss_pred HHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 010239 455 VTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXS 496 (514)
Q Consensus 455 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (514)
++.+.+.+.+ .++...|...+++++++.++.++..++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988876 5677788888888877777766655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=282.33 Aligned_cols=357 Identities=13% Similarity=0.077 Sum_probs=271.5
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010239 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (514)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 134 (514)
.++++..+..+++.....+.+|.+.++ +|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 75 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 344566677777888889999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 135 LVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~ 154 (375)
T 2gfp_A 76 MLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877 999
Q ss_pred HHHHhhHHHHHHHHH-HhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
+.|++.+++.++..+ ..+++||+++.. + ++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------~~~~~ 188 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVD---A-------------------------------------------PRTRL 188 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------------------CCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCC---c-------------------------------------------ccccH
Confidence 999999988877655 445577765410 0 00112
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKLIMTGLAVLVVERLG 372 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 372 (514)
+.++++.++++..+...+...+.... ......+.|.++++ .+. +..+.+.......++.+++.++.+++.||.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 263 (375)
T 2gfp_A 189 LTSYKTLFGNSGFNCYLLMLIGGLAG----IAAFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFS 263 (375)
T ss_dssp TTCSTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCSCSSHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455677776655554444333322 23445556666555 566 6778899999999999999999999999988
Q ss_pred CchhhhhhHHH-HHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHH
Q 010239 373 RRPLLLGGVSG-IVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGA 451 (514)
Q Consensus 373 ~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 451 (514)
++ ...+..+ ...+..++..... ...+.+.......+.+.+.+ ...+....+..|..| ++|+++.|+.+...++|
T Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 264 TL--MWQSVICCLLAGLLMWIPDWF-GVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIG 338 (375)
T ss_dssp HH--HHHHHHHHHHTSSSSSHHHHH-HHHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHH
Confidence 72 2222222 2222111111000 01122333333333333333 344666788999998 88999999999999999
Q ss_pred HHHHHHhchHhHHhhCcchhhHHH
Q 010239 452 NALVTFAFSPLKDLLGAGILFYAF 475 (514)
Q Consensus 452 ~~~~~~~~g~l~~~~g~~~~~~~~ 475 (514)
..++|.+.|.+.+..++...+...
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999998877776555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=261.11 Aligned_cols=370 Identities=14% Similarity=0.064 Sum_probs=238.6
Q ss_pred cccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHhhh
Q 010239 70 STSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGA---LVTALAP 145 (514)
Q Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~ 145 (514)
...+.+|. ++++ +|+++.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++. ..+.+++
T Consensus 25 ~~~~~~~~~l~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 25 AYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHTTTHHHHHHTT-------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555 4555 79999999999999999999999999999999999999999888776532 2223333
Q ss_pred hHH-HHHHHHHHHhhhhhhhhhHHHHHHhhcCCC--CcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHH
Q 010239 146 DFI-IMVVGRFVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTP 222 (514)
Q Consensus 146 ~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~ 222 (514)
... .+..++++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+. +||+.|++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~ 175 (417)
T 2cfq_A 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSG 175 (417)
T ss_dssp HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHH
Confidence 221 244566676666665554444444444432 3557777888778889999999999998763 89999998887
Q ss_pred HHHHHHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccccchhHHHhh
Q 010239 223 LAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFH 302 (514)
Q Consensus 223 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (514)
+.++..+..++.+|+++.. . ++.+ + +. +..++....+++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~---~--~~~~---~--------------~~---------------~~~~~~~~~~~~~~~~ 218 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPSS---A--TVAN---A--------------VG---------------ANHSAFSLKLALELFR 218 (417)
T ss_dssp TTTTHHHHSCSSCCCCSCS---S--CSSS---S--------------SS---------------SCCCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcccccc---c--cccc---c--------------cc---------------cccccccHHHHHHHhc
Confidence 7655555555544433200 0 0000 0 00 0000111123455666
Q ss_pred hchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhh
Q 010239 303 GKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFS---AASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLG 379 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 379 (514)
++..+...+....... .+.....+.|.++.+.... +....+.......++.+++.++.++++||++||+++..
T Consensus 219 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 219 QPKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 6655544333222211 1123333455555443210 23345677777788889999999999999999998887
Q ss_pred hHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHH-HHHHHHHHHHHHHh
Q 010239 380 GVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVA-VLVNFGANALVTFA 458 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~ 458 (514)
+..+.+++.+++.. .++.+..+....+...... ...+..+.+..|.+|++.|+++.++. +....+|++++|.+
T Consensus 295 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 295 AGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHHHTT-----CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 77776665544432 2233333332222222222 22233457889999999999999995 78888999999999
Q ss_pred chHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCC
Q 010239 459 FSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXX 495 (514)
Q Consensus 459 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (514)
.|.+.+..|+...|.+.+++++++.++.+...+++++
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999998888888888888888887776665655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=250.34 Aligned_cols=393 Identities=14% Similarity=0.104 Sum_probs=226.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhHH
Q 010239 91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 91 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.+..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhH---HHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcc-cCchhHHHHh
Q 010239 169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL-PASPRWLLLC 244 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~ 244 (514)
.+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+.. +||+.|++.+++.++..+..++. ++.++. +
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~ 206 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIHM---P 206 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCCC---C
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhccccccc---C
Confidence 9999999999999877666 99999999999999999998876 99999999888877655544433 221100 0
Q ss_pred hccccCCccccHHHHHHHHH-HHhCCCCCCCCchhHHHHHH------hh-----------------hhccccccchhHHH
Q 010239 245 AMKRKGDMQDLRESAISCLC-RLRGQSIGDSAPTEVDEILT------EL-----------------SYVGEDKEVSLREV 300 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~-----------------~~~~~~~~~~~~~~ 300 (514)
++++ ...+..+... ..+......+.......... .. ...+++.+.+++++
T Consensus 207 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 207 PEPK------DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred CCCc------cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 0000 0000000000 00000000000000000000 00 00000000011000
Q ss_pred -----------hhh-chhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q 010239 301 -----------FHG-KCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAA-SDATRVSILLGLFKLIMTGLAVLV 367 (514)
Q Consensus 301 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l 367 (514)
.++ +....... ...........+.......+.+..+.+. +. ...+.......++.+++.++.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDMVK-PQWFEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHSCC-CSSSCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred hhhhccccHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhcCC-CeeecHHHHHHHHHHHHHHhHHHHHhh
Confidence 001 11111111 1111111111111111122222233322 11 135555555555555565555554
Q ss_pred H----hHhCC----chhhhhhHHHHHHHHHHHHHhhhc----cCCcchHHHHHHHHHHHHhhcccccccceeeccccchh
Q 010239 368 V----ERLGR----RPLLLGGVSGIVISLFLLGSYYLF----LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLR 435 (514)
Q Consensus 368 ~----d~~g~----r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 435 (514)
. +|.++ ++.+..+..+.+++++++...... ...+.+..+....+.+ .......+..+.+..|..|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 359 LYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT-FGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp ------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH-HHHHHHHHHHTTTHHHHCCTT
T ss_pred hHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHH
Confidence 3 44433 244556666666655544321100 0123333333333333 333334456678899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhchHhHHhh----------Cc-chhhHHHHHHHHHHHHHhCCCCCCCCCC
Q 010239 436 LRGRGLSVAVLVNFGANALVTFAFSPLKDLL----------GA-GILFYAFGVIAVLSLAFIFXXXXXXXXS 496 (514)
Q Consensus 436 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (514)
.||+++|+.++..++|+.++|.+.|.+.+.. +. ...|++.+++++++.++.+++.++.+++
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999887632 21 2236677777777777766666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=134.51 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=129.3
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHhhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--PDFIIMVVGRFVFGIGIGL 163 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 163 (514)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999 99999888887776 666666665 3678888888999999999
Q ss_pred hhhHHHHHHhhcCCCCcchhHHhHHHHHHHH-HHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhcc
Q 010239 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (514)
Q Consensus 164 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 234 (514)
..+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. +|+..|++.+++.++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999987 89999999988888766555544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=130.44 Aligned_cols=159 Identities=11% Similarity=-0.010 Sum_probs=124.0
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
........|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++...... .++.+
T Consensus 42 ~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 118 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTL-TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYT 118 (438)
T ss_dssp HHHHHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred HHhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cccHH
Confidence 34666677888889998 8899999999999999999999999999999999999999998888877632111 33445
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhH-HhhC---------------
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLK-DLLG--------------- 467 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g--------------- 467 (514)
..++..++.+.+.+ ...+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..+
T Consensus 119 ~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (438)
T 3o7q_A 119 LFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQL 197 (438)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchh
Confidence 55544444444443 334555689999999999999999999999999999999999998 5444
Q ss_pred ----------cchhhHHHHHHHHHHHHHh
Q 010239 468 ----------AGILFYAFGVIAVLSLAFI 486 (514)
Q Consensus 468 ----------~~~~~~~~~~~~~~~~~~~ 486 (514)
|++.|++.+++.++..++.
T Consensus 198 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 198 SAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777666655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=128.91 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=130.3
Q ss_pred hhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcch
Q 010239 324 QPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
........|.+.++.+. +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++... ++.+
T Consensus 16 ~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~ 89 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLT 89 (375)
T ss_dssp HHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHH
Confidence 34455566777788888 88899999999999999999999999999999999999988888888776642 2333
Q ss_pred HHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHH
Q 010239 404 VAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSL 483 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 483 (514)
..+....+. +.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.+++.++..
T Consensus 90 ~l~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 90 VLIAASAMQ-GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 333333333 3333334456668899999999999999999999999999999999999998899999988888777776
Q ss_pred HHhCCCCCCCCC
Q 010239 484 AFIFXXXXXXXX 495 (514)
Q Consensus 484 ~~~~~~~~~~~~ 495 (514)
+......||+++
T Consensus 169 ~~~~~~~~~~~~ 180 (375)
T 2gfp_A 169 FSMARWMPETRP 180 (375)
T ss_dssp CCCCCSSCCCST
T ss_pred HHHHHHCcccCC
Confidence 655555665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=129.74 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=125.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHHHHH
Q 010239 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY 171 (514)
Q Consensus 92 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 171 (514)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999999999999999999999999999988888888888888888888888898888777888899
Q ss_pred HhhcCCCCcchhHHhH-HHHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHh-hcccCch
Q 010239 172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGM-WWLPASP 238 (514)
Q Consensus 172 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 238 (514)
+.|.+|++.|+.+.++ ++....+|..++|.+++.+.+.. +++..|.+.++++++..+.. ++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888899999999999998876 89999999888887765543 3456544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=132.35 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=121.2
Q ss_pred HHHHhHHHHHHH------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhH-hCCchhhhhhHHHHHHHHHHHHHhhhcc
Q 010239 326 SVLYYAASILQS------AGFSAASDATRVSILLGLFKLIMTGLAVLVVER-LGRRPLLLGGVSGIVISLFLLGSYYLFL 398 (514)
Q Consensus 326 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
....+.+.++++ .+. +..+.++..+...++..++.++.|+++|| +|||+++..+.++..++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHI-TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 444455555544 677 88899999999999999999999999999 89999999999888888777653
Q ss_pred CCcchHHHHHHHHHHHHhhcccccccceeeccccchhh--hhhHHHHHHHHHHHHHHHHHHhchHhHHhhCcchhhHHHH
Q 010239 399 DDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRL--RGRGLSVAVLVNFGANALVTFAFSPLKDLLGAGILFYAFG 476 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 476 (514)
.++.+..++..++.+.+.+ ...+...+++.|.+|++. |+.++++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 105 ~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344444444444443333 344566689999999888 7788888999999999999999999999999999998887
Q ss_pred HHHHHHHHHhC
Q 010239 477 VIAVLSLAFIF 487 (514)
Q Consensus 477 ~~~~~~~~~~~ 487 (514)
+..+++.++.+
T Consensus 184 ~~~~~~~~~~~ 194 (491)
T 4aps_A 184 IGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666655544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.7e-12 Score=123.63 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=120.0
Q ss_pred HHHHhHHHHH-HHcC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHh-CCchhhhhhHHHHHHHHHHHHHhhhc
Q 010239 326 SVLYYAASIL-QSAG------FSAASDATRVSILLGLFKLIMTGLAVLVVERL-GRRPLLLGGVSGIVISLFLLGSYYLF 397 (514)
Q Consensus 326 ~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
....+.+.++ ++.+ . +..+.++..+...++..++.++.|+++||+ |||+++..+.++..++.+++...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEEL-RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSST-TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhcccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 3444555544 4566 6 888999999999999999999999999999 99999999888888877776542
Q ss_pred cCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHH---HHHHHHHHHHHHHHhchHhHHhhCcchhhHH
Q 010239 398 LDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV---AVLVNFGANALVTFAFSPLKDLLGAGILFYA 474 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 474 (514)
..+.+..++..++.+ .......+...+++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+..||+..|++
T Consensus 106 -~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIA-LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp -SSCHHHHHHHHHHHH-HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred -cccHHHHHHHHHHHH-HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 113444444444443 33334446667899999999999776666 8888999999999999999998999999988
Q ss_pred HHHHHHHHHHHhCC
Q 010239 475 FGVIAVLSLAFIFX 488 (514)
Q Consensus 475 ~~~~~~~~~~~~~~ 488 (514)
.+++.+++.++.+.
T Consensus 184 ~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 184 PGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766655544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=121.37 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=110.9
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh-----hHHHHH-HHHHHHhhhhh
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP-----DFIIMV-VGRFVFGIGIG 162 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r~l~G~~~~ 162 (514)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...+. +.-+..+++.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 566667777777788888999999999999999999999999888888777665432 122222 22222333333
Q ss_pred hhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhhhhcccc-----cchhHHHHhhHHHHHHHHH-HhhcccC
Q 010239 163 LAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGM-GMWWLPA 236 (514)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-----~~wr~~f~~~~~~~~~~~~-~~~~~~e 236 (514)
..+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. .++.+.|++.++++++..+ .++++||
T Consensus 387 -~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 387 -WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp -TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 45677889999999999999999999999999999988876664321 1566778888888887544 4567899
Q ss_pred chh
Q 010239 237 SPR 239 (514)
Q Consensus 237 ~~~ 239 (514)
+..
T Consensus 466 Tkg 468 (491)
T 4gc0_A 466 TKG 468 (491)
T ss_dssp CTT
T ss_pred CCC
Confidence 853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 514 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-17 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 82.8 bits (203), Expect = 1e-17
Identities = 52/414 (12%), Positives = 121/414 (29%), Gaps = 36/414 (8%)
Query: 80 SPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGAL 139
+ + + S ++G SG + +++D R L +L L
Sbjct: 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104
Query: 140 VTALAPD----FIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLG 195
P +M V F+ G G+ + RG ++S+ +G
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164
Query: 196 MVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDL 255
+ L + W A+++ + + +
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ--------------- 209
Query: 256 RESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLK-ALIIGAG 314
S G E + ++E++ +++F L L+
Sbjct: 210 --------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA 255
Query: 315 LVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRR 374
+ + +L ++ + L+ A ++ L + T L + +++ R
Sbjct: 256 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 315
Query: 375 PLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPL 434
GV + + Y++ P V ++ +++ +G + L E+ P
Sbjct: 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPK 374
Query: 435 RLRGRGLSVAVLV-NFGANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIF 487
+ G L G + + D G F ++L++ +
Sbjct: 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 55/426 (12%), Positives = 105/426 (24%), Gaps = 52/426 (12%)
Query: 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFI 148
+S + G+I + +L+ L ++D LG R+ L+ LV +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 149 IMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYG--IGSLL 206
++ V I G+ + A + F M G G +G+ +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157
Query: 207 VDLVAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRL 266
V ++ + + + + A + S L
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL- 216
Query: 267 RGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPS 326
F L L + V
Sbjct: 217 ----------------------------------FRQPKLWFLSLYVIGVSCTYDVFDQQ 242
Query: 327 VLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVI 386
+ S + ++ L IM +++ G+ LLL G V
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV- 301
Query: 387 SLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVL 446
A+ VV L + I+ F +R V
Sbjct: 302 ------RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355
Query: 447 VNFG-ANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQRQRGLRL 505
A ++ + + +G + G++A+ + L L
Sbjct: 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV-------FTLSGPGPLSL 408
Query: 506 RRSRPN 511
R + N
Sbjct: 409 LRRQVN 414
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.49 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-41 Score=324.52 Aligned_cols=404 Identities=14% Similarity=0.073 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010239 49 AAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 128 (514)
.+|.++....++++..+++...++.+.|.+++ +|+|.+++|++.+++.+++.++++++|+++||+|||+++.
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 93 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 35666677778888888888888888888764 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhcCCCCcchhHHhHHHHHHHHHHHHHHHhhh
Q 010239 129 LAALLYLVGALVTALAP----DFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGS 204 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 204 (514)
++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 99999999999998864 67899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhHHHHhhHHHHHHHHHHhh-cccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHH
Q 010239 205 LLVDLVAGWRYMYGASTPLAVIMGMGMW-WLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283 (514)
Q Consensus 205 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+.....+||+.|++.+++.++..+..+ +.+++|+.......+ +. .....++..
T Consensus 174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------~~~~~~~~~ 228 (447)
T d1pw4a_ 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-EY------------------------KNDYPDDYN 228 (447)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-TT------------------------CCC------
T ss_pred hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh-hh------------------------hhhcccchh
Confidence 8877666899999999988887555444 456655421111000 00 000000000
Q ss_pred HhhhhccccccchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHH
Q 010239 284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGL 363 (514)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
+..+.+...++...+..++++..+.......+. .........+.+.++.+....+..+.+.......+..+++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (447)
T d1pw4a_ 229 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 304 (447)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccchhhHHHHHHHcCchHHHHHHHhhhh----hhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhh
Confidence 000111122222344445554443333322222 2223455667777776654448888999999999999999999
Q ss_pred HHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHH
Q 010239 364 AVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSV 443 (514)
Q Consensus 364 ~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 443 (514)
.|++.||++|++..........+..............+.+......++. ++...+..+....+..|.+|++.|+++.|+
T Consensus 305 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 383 (447)
T d1pw4a_ 305 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGF 383 (447)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH-HHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred hhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999998765554444433333333332222233333333333333 333333345556788999999999999999
Q ss_pred HHHHHHHH-HHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCC
Q 010239 444 AVLVNFGA-NALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXX 490 (514)
Q Consensus 444 ~~~~~~~g-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
.+...+++ ..++|.+.|.+.|..|+...+++.+++++++.++.+.+.
T Consensus 384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988875 566899999999999999888888777777766655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-30 Score=249.94 Aligned_cols=380 Identities=14% Similarity=0.045 Sum_probs=251.6
Q ss_pred Hhhccccccccccccc-ccCCCCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010239 62 LLYGYDIGSTSCATIS-IESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV 140 (514)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 140 (514)
+...+..+...|.+|. +.++ +|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~ 89 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3344455556677775 5555 8999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhHHH----HHHHHHHHhhhhhhhhhHHHHHHhhcCCC--CcchhHHhHHHHHHHHHHHHHHHhhhhhcccccchh
Q 010239 141 TALAPDFII----MVVGRFVFGIGIGLAMHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWR 214 (514)
Q Consensus 141 ~~~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 214 (514)
..+..+... .++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 167 (417)
T d1pv7a_ 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQ 167 (417)
T ss_dssp HHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHH
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--ccc
Confidence 888766544 34555566655555555554444444332 3455667788888899999999999998875 566
Q ss_pred HHHHhhHHHHHH-HHHHhhcccCchhHHHHhhccccCCccccHHHHHHHHHHHhCCCCCCCCchhHHHHHHhhhhccccc
Q 010239 215 YMYGASTPLAVI-MGMGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDK 293 (514)
Q Consensus 215 ~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
..+........+ ..+..+..+|+++....++ + +.+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---------------------------~~~~~~~~~ 209 (417)
T d1pv7a_ 168 FVFWLGSGCALILAVLLFFAKTDAPSSATVAN-----------A---------------------------VGANHSAFS 209 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH-----------H---------------------------HHSCCCCCC
T ss_pred ccccchhhHHHHHHHHHHHHhcccccchhhhh-----------h---------------------------hhhhccccc
Confidence 666555555554 4555555666654211100 0 000001111
Q ss_pred cchhHHHhhhchhhHHHHHHHHHHHHHhhChhHHHHhHHHHHHHcCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010239 294 EVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSAGF---SAASDATRVSILLGLFKLIMTGLAVLVVER 370 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 370 (514)
.....+..+.+..+.............. ......+.+...... .+....+.......++..++..+.+++.||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 285 (417)
T d1pv7a_ 210 LKLALELFRQPKLWFLSLYVIGVSCTYD----VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR 285 (417)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHH----hhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcc
Confidence 1222333333333333332222222211 111122222211111 033456677778888899999999999999
Q ss_pred hCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHH-HHHH
Q 010239 371 LGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVAVVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAV-LVNF 449 (514)
Q Consensus 371 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~ 449 (514)
.++|+.+..+..+.+++.+++.. .++.+..+....+.+.+.+. ..+...++..|.+|++.|+++.|+.. ....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (417)
T d1pv7a_ 286 IGGKNALLLAGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHH
T ss_pred cccccchhhhHHHHHHhhhcccc-----ccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHH
Confidence 99999999888888877776653 34444444444444444443 34566688999999999999999865 4577
Q ss_pred HHHHHHHHhchHhHHhhCcchhhHHHHHHHHHHHHHhCCCCCCCCCCch
Q 010239 450 GANALVTFAFSPLKDLLGAGILFYAFGVIAVLSLAFIFXXXXXXXXSFQ 498 (514)
Q Consensus 450 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (514)
+|..++|.+.|.+.|..|++..+++.+++.++..++.++..++++....
T Consensus 360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 9999999999999999999999999888888777776665655544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=7.3e-15 Score=138.85 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=132.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhHH
Q 010239 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (514)
Q Consensus 89 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 168 (514)
.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHhHH-HHHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHHHHHHHHhhc-ccC
Q 010239 169 PMYIAETAPTPMRGQLISLK-EFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPA 236 (514)
Q Consensus 169 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 236 (514)
.+++.|.+|+++|++..++. +....+|..++|.+++++.+.. ||+..|++.+++.++..++..+ +++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999985 5667899999999999999988 9999999999888875554444 443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=8.4e-14 Score=133.20 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=121.4
Q ss_pred HHHHhHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHhCCchhhhhhHHHHHHHHHHHHHhhhccCCcchHH
Q 010239 326 SVLYYAASILQSAGFSAASDATRVSILLGLFKLIMTGLAVLVVERLGRRPLLLGGVSGIVISLFLLGSYYLFLDDVPAVA 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
.+....|.+ ++.|. +..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.+..... ..+.+..
T Consensus 43 ~~~~~~p~~-~~~g~-s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 119 (447)
T d1pw4a_ 43 NFALAMPYL-VEQGF-SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVM 119 (447)
T ss_dssp SHHHHHHHT-TSSTT-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HSSSSHH
T ss_pred HHHHHHHHH-HHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh-hhhHHHH
Confidence 344445644 56787 88999999999999999999999999999999999999998888888776653221 1233333
Q ss_pred HHHHHHHHHHhhcccccccceeeccccchhhhhhHHHHHHHHHHHHHHHHHHhchHhHHhh-CcchhhHHHHHHHHHHHH
Q 010239 406 VVALLLYVGCYQLSFGPIGWLMISEVFPLRLRGRGLSVAVLVNFGANALVTFAFSPLKDLL-GAGILFYAFGVIAVLSLA 484 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~ 484 (514)
++...+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+.. +|++.+++.+.+.++..+
T Consensus 120 ~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 120 FVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh-hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 4443444333333 33555688999999999999999999999999999999988877765 688888887777666655
Q ss_pred HhCCCCC
Q 010239 485 FIFXXXX 491 (514)
Q Consensus 485 ~~~~~~~ 491 (514)
+.+.+.+
T Consensus 199 ~~~~~~~ 205 (447)
T d1pw4a_ 199 FAFAMMR 205 (447)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 5544443
|